BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0621 (PAB0621) DE:Hypothetical protein
         (298 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75140 hypothetical protein PAB0621 - Pyrococcus abyssi (st...   603  e-172
pir||E71115 hypothetical protein PH0692 - Pyrococcus horikoshii ...    82  8e-15

>pir||G75140 hypothetical protein PAB0621 - Pyrococcus abyssi (strain Orsay)
           >gi|5458351|emb|CAB49840.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 298
           
 Score =  603 bits (1539), Expect = e-172
 Identities = 298/298 (100%), Positives = 298/298 (100%)

Query: 1   MKGKSLIILLIIGLVILAVTLTRPREATFPSVTITPGPQKINSEEVSSKIKENLEGCFSI 60
           MKGKSLIILLIIGLVILAVTLTRPREATFPSVTITPGPQKINSEEVSSKIKENLEGCFSI
Sbjct: 1   MKGKSLIILLIIGLVILAVTLTRPREATFPSVTITPGPQKINSEEVSSKIKENLEGCFSI 60

Query: 61  TELRENPNFTKAKPVLSLLANNTKVYIFLYPNSTSALEAEKEVRENLGINFRDIINNDTL 120
           TELRENPNFTKAKPVLSLLANNTKVYIFLYPNSTSALEAEKEVRENLGINFRDIINNDTL
Sbjct: 61  TELRENPNFTKAKPVLSLLANNTKVYIFLYPNSTSALEAEKEVRENLGINFRDIINNDTL 120

Query: 121 VFSQYMDYSYALIVAKGPKEDLETLEMCIVKVGPSPGKILYLFTPLGRHFYNPLEGRKTL 180
           VFSQYMDYSYALIVAKGPKEDLETLEMCIVKVGPSPGKILYLFTPLGRHFYNPLEGRKTL
Sbjct: 121 VFSQYMDYSYALIVAKGPKEDLETLEMCIVKVGPSPGKILYLFTPLGRHFYNPLEGRKTL 180

Query: 181 ESRDWLESKGVKISGYLDKLEGSYKGCNFAIFIYKPDYATRVYDELKKAFLSSGWKESRS 240
           ESRDWLESKGVKISGYLDKLEGSYKGCNFAIFIYKPDYATRVYDELKKAFLSSGWKESRS
Sbjct: 181 ESRDWLESKGVKISGYLDKLEGSYKGCNFAIFIYKPDYATRVYDELKKAFLSSGWKESRS 240

Query: 241 FTLPSDFGRNPAGKLIMYSFLTSGDKVVYLELASFPAGHRVSLFYCNATSLDAINELW 298
           FTLPSDFGRNPAGKLIMYSFLTSGDKVVYLELASFPAGHRVSLFYCNATSLDAINELW
Sbjct: 241 FTLPSDFGRNPAGKLIMYSFLTSGDKVVYLELASFPAGHRVSLFYCNATSLDAINELW 298


>pir||E71115 hypothetical protein PH0692 - Pyrococcus horikoshii
           >gi|3257100|dbj|BAA29783.1| (AP000003) 286aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 286
           
 Score = 81.9 bits (199), Expect = 8e-15
 Identities = 77/286 (26%), Positives = 128/286 (43%), Gaps = 27/286 (9%)

Query: 4   KSLIILLIIGLVILAVTLTRPREATFPSVTITPGPQKINSEEVSSKIKENLEGCFSITEL 63
           K +I+LL++ L I              +V+++P     N  E    ++  LEG   + ++
Sbjct: 3   KVIILLLLVILAIFGYAYKLHTSQINLNVSLSPHCNYSNGSEA---LRIFLEGARYLYKV 59

Query: 64  RENP-------NFTKAKPVLSLLANNTKVYIFLYPNSTSALEAEKEVRENLGINFRDIIN 116
            E P       N+ K     S  AN T+  ++ Y +S S  + +  +   L      I  
Sbjct: 60  EEAPLNIVSPHNYLKK---FSGKANETEFGLYTYYSSDSCEKEKNRITNELEQRGFSIYK 116

Query: 117 NDTLVFSQ--------YMDYSYALIVAKGPKEDLETLEMCIVKV--GPSPGKILYLFTPL 166
           N+  V  +        +M  +Y L+VA+G +ED+      +  +  GPSP K+++ +T L
Sbjct: 117 NNIWVKDKKGYYVNCKFMGDAYILVVARGGREDVTNFAEAVTPLYYGPSPEKVIF-YTLL 175

Query: 167 GRHFYNPLEGRKTLESRDWLESKGVKISGYLDKLEGSYK-GCNFAIFIYKPDYATRVYDE 225
            ++    LE    ++  +W    GVKI GY+ KLEGS K   N AI++Y       VY E
Sbjct: 176 EKNISTMLEEDIQVKEENWTAGVGVKIGGYMAKLEGSVKPNLNVAIYVYPKGCGREVYLE 235

Query: 226 LKKAFLSSGWKESRSFTLPSD-FGRNPAGKLIMYSFLTSGDKVVYL 270
           + KA L+  WK+          F ++     + YS +   D+VV L
Sbjct: 236 IIKA-LAKSWKDITPVNATGKMFKKDNTRFYVEYSQVMGFDRVVIL 280


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113655151
Number of Sequences: 2977
Number of extensions: 4857517
Number of successful extensions: 18067
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18064
Number of HSP's gapped (non-prelim): 2
length of query: 298
length of database: 189,106,746
effective HSP length: 55
effective length of query: 243
effective length of database: 156,189,961
effective search space: 37954160523
effective search space used: 37954160523
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)