BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0623 (PAB0623) DE:Hypothetical protein
(140 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75141 hypothetical protein PAB0623 - Pyrococcus abyssi (st... 277 5e-74
pir||G71099 hypothetical protein PH1059 - Pyrococcus horikoshii ... 218 3e-56
sp|Q57659|Y206_METJA HYPOTHETICAL PROTEIN MJ0206 >gi|2128177|pir... 133 7e-31
gi|11498673 conserved hypothetical protein [Archaeoglobus fulgid... 116 1e-25
gb|AAK42393.1| Conserved hypothetical protein [Sulfolobus solfat... 109 2e-23
pir||H69184 conserved hypothetical protein MTH639 - Methanobacte... 101 4e-21
gb|AAG18951.1| (AE004996) Vng0396c [Halobacterium sp. NRC-1] 89 2e-17
pir||B72699 hypothetical protein APE1009 - Aeropyrum pernix (str... 86 2e-16
>pir||A75141 hypothetical protein PAB0623 - Pyrococcus abyssi (strain Orsay)
>gi|5458353|emb|CAB49842.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 140
Score = 277 bits (700), Expect = 5e-74
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MPREIIRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKG 60
MPREIIRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKG
Sbjct: 1 MPREIIRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKG 60
Query: 61 KRVRILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRI 120
KRVRILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRI
Sbjct: 61 KRVRILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRI 120
Query: 121 VERLKDPNTIATIEIIVDDD 140
VERLKDPNTIATIEIIVDDD
Sbjct: 121 VERLKDPNTIATIEIIVDDD 140
>pir||G71099 hypothetical protein PH1059 - Pyrococcus horikoshii
>gi|3257474|dbj|BAA30157.1| (AP000004) 141aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 141
Score = 218 bits (549), Expect = 3e-56
Identities = 106/140 (75%), Positives = 125/140 (88%)
Query: 1 MPREIIRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKG 60
M +E+IRC+GH NVKATH+ST EITKE++LT RGDCIIC+SADKAL+DLS E+K IR G
Sbjct: 2 MIKEVIRCKGHRNVKATHRSTFEITKEDYLTERGDCIICVSADKALQDLSQEVKRAIRAG 61
Query: 61 KRVRILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRI 120
KR+RILI+VGDLVDEVIA G LSLES TS+VIRKSD+VDGRTLAI+ANK+A+DIDR+I
Sbjct: 62 KRIRILIRVGDLVDEVIAYGDPRLSLESETSMVIRKSDWVDGRTLAIKANKAAKDIDRKI 121
Query: 121 VERLKDPNTIATIEIIVDDD 140
VERL+DPNT A IEIIVDD+
Sbjct: 122 VERLRDPNTTAIIEIIVDDE 141
>sp|Q57659|Y206_METJA HYPOTHETICAL PROTEIN MJ0206 >gi|2128177|pir||G64325 conserved
hypothetical protein MJ0206 - Methanococcus jannaschii
>gi|1498981|gb|AAB98190.1| (U67476) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 135
Score = 133 bits (332), Expect = 7e-31
Identities = 65/122 (53%), Positives = 90/122 (73%)
Query: 5 IIRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKGKRVR 64
II+ +GH+NV ATHK+TLEITKE++LTP G CII I ADK++ D S+E K +R K++
Sbjct: 4 IIKAKGHKNVSATHKTTLEITKEDYLTPTGHCIIGIDADKSMTDFSEEFKEKLRNAKKII 63
Query: 65 ILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRIVERL 124
+ I+V + D +I GH+ L L T +VIRKS+Y+ RTL I ANKSA+DI+R IV++L
Sbjct: 64 VEIEVEGIKDTIIGEGHKDLILNHPTDMVIRKSNYICPRTLMINANKSAKDINREIVKKL 123
Query: 125 KD 126
K+
Sbjct: 124 KE 125
>gi|11498673 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451024|pir||D69383 conserved hypothetical protein
AF1068 - Archaeoglobus fulgidus
>gi|2649520|gb|AAB90172.1| (AE001029) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 145
Score = 116 bits (288), Expect = 1e-25
Identities = 58/126 (46%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 6 IRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKGK--RV 63
I GH+N++ATH++T EITK LTPRGDCII + ADK L D+ + K L++KG V
Sbjct: 4 IFAHGHKNIRATHRTTFEITKSEHLTPRGDCIIGVGADKGLPDIPESFKQLLKKGHFFEV 63
Query: 64 RILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRIVER 123
+L+ L ++V+ G +L+L IV+RKS+Y RTL ++ANK+A D+ R +VE
Sbjct: 64 ELLLPDYGLSEKVVGRGDASLTLSHPEDIVVRKSNYTCPRTLLVKANKAAADLSREMVEY 123
Query: 124 LKDPNT 129
LK+ NT
Sbjct: 124 LKEKNT 129
>gb|AAK42393.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 161
Score = 109 bits (269), Expect = 2e-23
Identities = 52/121 (42%), Positives = 84/121 (68%), Gaps = 1/121 (0%)
Query: 6 IRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKGKR-VR 64
++ +GH NV+A HK+TLEITK+++LT RGDCII I A+K +DLS+++K + R K +
Sbjct: 7 VKIKGHHNVRAFHKTTLEITKDDYLTSRGDCIIGILANKGARDLSEDLKKIARNDKSFIY 66
Query: 65 ILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRIVERL 124
+I+V + +D V G + E+ I+ RKS +++G T+ I ++K+ARDI+R I++ L
Sbjct: 67 GVIRVKEFLDVVHGRGSSKFTFENQNKIIFRKSTFIEGSTVMINSDKAARDINREIIDLL 126
Query: 125 K 125
K
Sbjct: 127 K 127
>pir||H69184 conserved hypothetical protein MTH639 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621720|gb|AAB85144.1| (AE000844) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 161
Score = 101 bits (249), Expect = 4e-21
Identities = 55/137 (40%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Query: 3 REIIRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLI-RKGK 61
R +R RGH NV A H++T E+T + + DCII +S+ ++ L DE+K I R+
Sbjct: 25 RYTLRARGHPNVTAGHRTTFEVTVDPEIGETADCIIGVSSSDSISTLPDEMKRAIARESS 84
Query: 62 RVRILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRIV 121
VR++++ + DE+ GH L+L+ T IV RKSDY+ RTL IRA+K+A D+D +V
Sbjct: 85 LVRVILRTENGYDEIRGYGHPELTLDHPTDIVCRKSDYICSRTLMIRADKAAFDLDENLV 144
Query: 122 ERLKDPNTIATIEIIVD 138
L+ + +EIIV+
Sbjct: 145 RDLRKGREL-KVEIIVE 160
>gb|AAG18951.1| (AE004996) Vng0396c [Halobacterium sp. NRC-1]
Length = 137
Score = 88.9 bits (217), Expect = 2e-17
Identities = 47/122 (38%), Positives = 70/122 (56%), Gaps = 1/122 (0%)
Query: 6 IRCRGHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIR-KGKRVR 64
+ GH+NV A H STLE+T ++FLTP GDCI+ I AD + SD + + +
Sbjct: 5 VSATGHDNVTARHDSTLELTTDDFLTPAGDCILGIDADCSPAAFSDAFVAACQDAAATIT 64
Query: 65 ILIKVGDLVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRIVERL 124
+++ DE+ GH L+ + S+V R S YVD RT+ + A+K+A D+DR +V L
Sbjct: 65 LVLDTPQHRDEITGSGHPDLTFTNDRSMVGRTSTYVDDRTVFVDADKAAADVDRELVAAL 124
Query: 125 KD 126
D
Sbjct: 125 AD 126
>pir||B72699 hypothetical protein APE1009 - Aeropyrum pernix (strain K1)
>gi|5104679|dbj|BAA79994.1| (AP000060) 224aa long
hypothetical protein [Aeropyrum pernix]
Length = 224
Score = 85.8 bits (209), Expect = 2e-16
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 10 GHENVKATHKSTLEITKENFLTPRGDCIICISADKALKDLSDEIKSLIRKGKRVRILIKV 69
GH NV+ATH++T EIT +++LTPRGDCII I + + L KS+ R + +++
Sbjct: 67 GHPNVRATHRTTFEITSDDYLTPRGDCIIGIRSSVTPRSLPQWFKSIARSPDSIIVVVLC 126
Query: 70 GD-LVDEVIACGHETLSLESSTSIVIRKSDYVDGRTLAIRANKSARDIDRRIVERLK 125
+ + D + GH LSL +V R+S +V T+ I ++K+A D+ R ++E L+
Sbjct: 127 SEGVCDTAVGRGHPGLSLGDGRRMVFRRSSFVGPETVMIGSSKAAADLRRDLIEMLR 183
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.138 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45386534
Number of Sequences: 2977
Number of extensions: 1523296
Number of successful extensions: 4641
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4625
Number of HSP's gapped (non-prelim): 10
length of query: 140
length of database: 189,106,746
effective HSP length: 56
effective length of query: 84
effective length of database: 155,591,474
effective search space: 13069683816
effective search space used: 13069683816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)