BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0624 (PAB0624) DE:Hypothetical protein
         (158 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75141 hypothetical protein PAB0624 - Pyrococcus abyssi (st...   316  1e-85
pir||E71099 hypothetical protein PH1057 - Pyrococcus horikoshii ...   272  1e-72
pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (st...    68  7e-11

>pir||B75141 hypothetical protein PAB0624 - Pyrococcus abyssi (strain Orsay)
           >gi|5458354|emb|CAB49843.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 158
           
 Score =  316 bits (800), Expect = 1e-85
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MRVVDALALALEVEKAELKFYLEMAKIAREEKARKMFLFLANEELEHWKIFEEKLIEALL 60
           MRVVDALALALEVEKAELKFYLEMAKIAREEKARKMFLFLANEELEHWKIFEEKLIEALL
Sbjct: 1   MRVVDALALALEVEKAELKFYLEMAKIAREEKARKMFLFLANEELEHWKIFEEKLIEALL 60

Query: 61  RHCEKPNIDEEALEKLTPKMEGEVSEIKAVEVGMMQEKKTWEFYEKLAEEVEDEEVKKTL 120
           RHCEKPNIDEEALEKLTPKMEGEVSEIKAVEVGMMQEKKTWEFYEKLAEEVEDEEVKKTL
Sbjct: 61  RHCEKPNIDEEALEKLTPKMEGEVSEIKAVEVGMMQEKKTWEFYEKLAEEVEDEEVKKTL 120

Query: 121 KELAKVEEGHYELLKAQYDSVAKTGIWMDYQDFSLEVD 158
           KELAKVEEGHYELLKAQYDSVAKTGIWMDYQDFSLEVD
Sbjct: 121 KELAKVEEGHYELLKAQYDSVAKTGIWMDYQDFSLEVD 158


>pir||E71099 hypothetical protein PH1057 - Pyrococcus horikoshii
           >gi|3257472|dbj|BAA30155.1| (AP000004) 161aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 161
           
 Score =  272 bits (689), Expect = 1e-72
 Identities = 131/158 (82%), Positives = 147/158 (92%)

Query: 1   MRVVDALALALEVEKAELKFYLEMAKIAREEKARKMFLFLANEELEHWKIFEEKLIEALL 60
           M+VVDALALALEVEK ELKFYLEMA+IA+EEKARKMFLFLA+EE EHW+IFEEKLI  LL
Sbjct: 4   MKVVDALALALEVEKTELKFYLEMARIAKEEKARKMFLFLASEEAEHWRIFEEKLINELL 63

Query: 61  RHCEKPNIDEEALEKLTPKMEGEVSEIKAVEVGMMQEKKTWEFYEKLAEEVEDEEVKKTL 120
           + CE+P IDEE ++KLTPK+EGE+SEIKAVE+GM QEK TWEFYEKLAEE+ DE+V+KTL
Sbjct: 64  KSCERPRIDEEIVKKLTPKVEGELSEIKAVEIGMEQEKATWEFYEKLAEEIRDEDVRKTL 123

Query: 121 KELAKVEEGHYELLKAQYDSVAKTGIWMDYQDFSLEVD 158
           +ELAKVEE HYELLKAQYDSVAKTGIWMDYQDFSLEVD
Sbjct: 124 RELAKVEESHYELLKAQYDSVAKTGIWMDYQDFSLEVD 161


>pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (strain Orsay)
           >gi|5458343|emb|CAB49832.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 175
           
 Score = 67.5 bits (162), Expect = 7e-11
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 6/139 (4%)

Query: 5   DALALALEVEKAELKFYLEMAKIAREEKARKMFLFLANEELEHWKIFEEKLIEALLRHCE 64
           + L +A++ E    KFY   A+    E  +   L+LA+EE +H K+   KL  ++    E
Sbjct: 23  ELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLASEEEKHEKMLR-KLYSSMFPGKE 81

Query: 65  ----KPNIDEEALEKLTPKMEGEVSEIKAVEVGMMQEKKTWEFYEKLAEEVEDEEVKKTL 120
               K +I  E L+ +  +++G    I  +   M  E+   +FYEKL + VE EE K+ +
Sbjct: 82  VVFPKEHIGPE-LQPVAKELKGSQDVIDLIHWAMKAEEIAAQFYEKLMDIVEGEEKKRLM 140

Query: 121 KELAKVEEGHYELLKAQYD 139
           K L+ +E GHY +L+A+Y+
Sbjct: 141 KSLSDMERGHYYMLRAEYE 159


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.132    0.358 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53098999
Number of Sequences: 2977
Number of extensions: 2065073
Number of successful extensions: 11337
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11329
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 189,106,746
effective HSP length: 59
effective length of query: 99
effective length of database: 153,796,013
effective search space: 15225805287
effective search space used: 15225805287
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 161 (67.1 bits)