BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB0625 (PAB0625) DE:TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG (118 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||D75141 transcription repressor smtb homolog PAB0625 - Pyroc... 236 8e-62 pir||A75601 transcription repressor SmtB - Deinococcus radiodura... 104 3e-22 sp|P37374|CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOM... 96 1e-19 sp|Q55940|SMTB_SYNY3 TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG >gi|... 96 1e-19 dbj|BAB07756.1| (AP001520) cadmium-binding protein (cadmium effl... 86 1e-16 sp|Q56405|CADC_LISMO CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi... 86 1e-16 sp|P30340|SMTB_SYNP7 TRANSCRIPTIONAL REPRESSOR SMTB >gi|419637|p... 82 2e-15 sp|P30339|CADC_BACFI CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi... 81 4e-15 pir||C42707 cadmium resistance determinant/cation-binding protei... 81 4e-15 emb|CAB96928.1| (AJ251015) CadC protein [Stenotrophomonas maltop... 79 1e-14 sp|P20047|CADC_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi... 78 2e-14 pir||G69106 transcription regulator - Methanobacterium thermoaut... 78 2e-14 gb|AAB37344.1| (U78967) cadmium resistance regulatory protein [L... 77 7e-14 gi|10956778 CadX [Staphylococcus lugdunensis] >gi|1658281|gb|AAB... 74 5e-13 >pir||D75141 transcription repressor smtb homolog PAB0625 - Pyrococcus abyssi (strain Orsay) >gi|5458356|emb|CAB49845.1| (AJ248285) TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG [Pyrococcus abyssi] Length = 118 Score = 236 bits (595), Expect = 8e-62 Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD 60 MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD Sbjct: 1 MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD 60 Query: 61 LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118 LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR Sbjct: 61 LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118 >pir||A75601 transcription repressor SmtB - Deinococcus radiodurans (strain R1) >gi|6460539|gb|AAF12245.1|AE001862_71 (AE001862) transcriptional repressor SmtB [Deinococcus radiodurans] Length = 125 Score = 104 bits (258), Expect = 3e-22 Identities = 49/114 (42%), Positives = 77/114 (66%), Gaps = 1/114 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 +VC++ H + + +A++ LP + + F LG+PTRL +L AL ELC CDL+ Sbjct: 13 DVCEINCVHPEAVAQARAALPGEAHTAAATTFLKLLGDPTRLNLLSALSRT-ELCVCDLA 71 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116 A+ LS SA+SHQLR+L+ ++V +RK+G+ V+YRL DEH+ ++R+AL+H E Sbjct: 72 AVVGLSESAVSHQLRLLRTGRLVAFRKEGRVVYYRLADEHVTTLIRSALDHARE 125 >sp|P37374|CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOMOLOG >gi|152977|gb|AAA26609.1| (L10909) cadmium resistance protein [Staphylococcus aureus] Length = 121 Score = 96.0 bits (235), Expect = 1e-19 Identities = 48/115 (41%), Positives = 72/115 (61%), Gaps = 1/115 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 ++C+V H DK+ AK L + ++V+ F AL + TR+KI + L GELC CD++ Sbjct: 4 DMCEVTYIHEDKVNRAKKDLAKQNP-MDVAKVFKALSDDTRVKIAYVLSLEGELCVCDVA 62 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117 I + S + SH LR+LK+ I YRK+GK V+Y LDDEH+++++ A H EV Sbjct: 63 NIIESSTATASHHLRLLKNLGIAKYRKEGKLVYYSLDDEHVKQLVEKAFLHQREV 117 >sp|Q55940|SMTB_SYNY3 TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG >gi|7443999|pir||S77014 transcription repressor smtB - Synechocystis sp. (strain PCC 6803) >gi|1001825|dbj|BAA10706.1| (D64005) transcriptional repressor SmtB [Synechocystis sp.] Length = 132 Score = 96.0 bits (235), Expect = 1e-19 Identities = 43/106 (40%), Positives = 73/106 (68%), Gaps = 1/106 (0%) Query: 11 HLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLSAITKLSVS 70 HL+++ + + + ++ ++++FF AL +P+RL+++ AL ELC CDL+A K+S S Sbjct: 26 HLEQVRQVQPEVMSLDQAQQMAEFFSALADPSRLRLMSALARQ-ELCVCDLAAAMKVSES 84 Query: 71 AISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116 A+SHQLRIL+ +++V YR+ G+NV+Y L D H+ + R +HL E Sbjct: 85 AVSHQLRILRSQRLVKYRRVGRNVYYSLADNHVMNLYREVADHLQE 130 >dbj|BAB07756.1| (AP001520) cadmium-binding protein (cadmium efflux system accessory protein) [Bacillus halodurans] Length = 122 Score = 86.2 bits (210), Expect = 1e-16 Identities = 45/115 (39%), Positives = 69/115 (59%), Gaps = 1/115 (0%) Query: 2 VEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDL 61 ++ C V+ +K+ + S + E +V+D F AL + TR+KI +AL++ ELC CD+ Sbjct: 4 LDTCDVFLYDKEKV-QLVSEAMKGENFAKVADMFKALADETRVKIAYALLQQEELCVCDV 62 Query: 62 SAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116 + I + + SH LR L++ I RK+GK VFY LDD+H+R IL A+ H E Sbjct: 63 AHIIGATTATASHHLRHLRNLGIAKRRKEGKLVFYSLDDDHVRTILSMAVVHGKE 117 >sp|Q56405|CADC_LISMO CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|495647|gb|AAA25276.1| (L28104) accessory protein [Listeria monocytogenes] Length = 119 Score = 85.8 bits (209), Expect = 1e-16 Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 2 VEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDL 61 V++C++ +K+ K+ L E ++ +S F L + TR+KI++AL+ ELC CDL Sbjct: 3 VDICEITCIDEEKVKRVKTGL-ETVEVTTISQIFKILSDETRVKIVYALLTENELCVCDL 61 Query: 62 SAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTAL 111 + I + +V+A SH LR LK + I YRKDGK V+Y L +E +R+ ++ L Sbjct: 62 ANIVEATVAATSHHLRFLKKQGIANYRKDGKLVYYSLANERVRDRIKLIL 111 >sp|P30340|SMTB_SYNP7 TRANSCRIPTIONAL REPRESSOR SMTB >gi|419637|pir||S31197 smtB protein - Synechococcus sp. (strain PCC 7942) >gi|2781107|pdb|1SMT|B Chain B, Smtb Repressor From Synechococcus Pcc7942 >gi|2781106|pdb|1SMT|A Chain A, Smtb Repressor From Synechococcus Pcc7942 >gi|46491|emb|CAA45872.1| (X64585) SmtB [Synechococcus PCC7942] Length = 122 Score = 82.3 bits (200), Expect = 2e-15 Identities = 39/88 (44%), Positives = 62/88 (70%), Gaps = 1/88 (1%) Query: 31 VSDFFDALGNPTRLKILFALMEAGELCTCDLSAITKLSVSAISHQLRILKDRKIVTYRKD 90 +++FF L +P RL++L +L+ ELC DL+ +S SA+SHQLR L++ ++V+YRK Sbjct: 36 LAEFFAVLADPNRLRLL-SLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 Query: 91 GKNVFYRLDDEHIREILRTALNHLSEVR 118 G++V+Y+L D HI + + AL+HL E R Sbjct: 95 GRHVYYQLQDHHIVALYQNALDHLQECR 122 >sp|P30339|CADC_BACFI CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|143752|gb|AAA22857.1| (M90750) cadmium-efflux system accessory protein [Bacillus firmus] Length = 122 Score = 81.1 bits (197), Expect = 4e-15 Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 + C+++ +K+ + L + I+ V+ A+ + R KI +AL + E C CD++ Sbjct: 5 DTCEIFCYDEEKVNRIQGDLKTID-IVSVAQMLKAIADENRAKITYALCQDEESCVCDIA 63 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117 I ++ + SH LR L + IV YRK+GK FY LDDEHIR+I+ L H EV Sbjct: 64 NIIGITAANASHHLRTLHKQGIVRYRKEGKLAFYSLDDEHIRQIMMIVLEHKKEV 118 >pir||C42707 cadmium resistance determinant/cation-binding protein CadC - Bacillus firmus Length = 122 Score = 81.1 bits (197), Expect = 4e-15 Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 + C+++ +K+ + L + I+ V+ A+ + R KI +AL + E C CD++ Sbjct: 5 DTCEIFCYDEEKVNRIQGDLKTID-IVSVAQMLKAIADENRAKITYALCQDEESCVCDIA 63 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117 I ++ + SH LR L + IV YRK+GK FY LDDEHIR+I+ L H EV Sbjct: 64 NIIGITAANASHHLRTLHKQGIVRYRKEGKLAFYSLDDEHIRQIMMIVLEHKKEV 118 >emb|CAB96928.1| (AJ251015) CadC protein [Stenotrophomonas maltophilia] Length = 122 Score = 79.2 bits (192), Expect = 1e-14 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 + C+++ +K+ + L + I VS A+ + R KI +AL + ELC CD++ Sbjct: 5 DTCEIFCYDEEKVNRIQGDL-QTVDISGVSQMLKAIADENRAKITYALCQDEELCVCDIA 63 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118 I ++++ SH LR+L + +V +RK+GK Y LDDEHI +I+ AL H EV+ Sbjct: 64 NILGVTIANASHHLRMLYKQGVVNFRKEGKLALYSLDDEHIGQIMMIALAHKKEVK 119 >sp|P20047|CADC_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|79864|pir||B32561 cadC protein - Staphylococcus aureus plasmid pI258 >gi|986931|gb|AAB59153.1| (J04551) unknown protein [Plasmid pI258] Length = 122 Score = 78.4 bits (190), Expect = 2e-14 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 + C+++ +K+ + L + I VS A+ + R KI +AL + ELC CD++ Sbjct: 5 DTCEIFCYDEEKVNRIQGDL-QTVDISGVSQILKAIADENRAKITYALCQDEELCVCDIA 63 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118 I ++++ SH LR L + +V +RK+GK Y L DEHIR+I+ AL H EV+ Sbjct: 64 NILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKKEVK 119 >pir||G69106 transcription regulator - Methanobacterium thermoautotrophicum (strain Delta H) >gi|2622927|gb|AAB86261.1| (AE000934) transcriptional regulator [Methanobacterium thermoautotrophicum] Length = 119 Score = 78.4 bits (190), Expect = 2e-14 Identities = 36/105 (34%), Positives = 63/105 (59%), Gaps = 1/105 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 ++C++ ++++ ++ +P + I + D F L PTRLKIL AL LC C+L+ Sbjct: 4 DICEIEHTDRERVLRVRAEMPSIDDIRGICDIFKILSEPTRLKILMAL-SLDSLCVCELA 62 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREIL 107 ++ ++ SA+SHQLRIL++ +V Y +DGK Y L D + + + Sbjct: 63 SLLDVTQSAVSHQLRILRNAGMVDYERDGKMARYYLRDNMVVDFI 107 >gb|AAB37344.1| (U78967) cadmium resistance regulatory protein [Lactococcus lactis] >gi|9789449|gb|AAF98301.1|AF243383_2 (AF243383) cadmium resistance regulator CadC [Lactococcus lactis subsp. lactis] Length = 119 Score = 76.9 bits (186), Expect = 7e-14 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62 E+C++ H DK+ AKS+L + VS FF L + RLKI+ AL+ ELC CD++ Sbjct: 4 EICEITCIHEDKVNRAKSKLANFDTP-SVSGFFKILSDENRLKIVHALVHEDELCVCDIA 62 Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117 I SV+ SH L LK +V KDGK V+Y + + I ++ +N EV Sbjct: 63 NIIDASVATTSHHLNSLKKLGVVDSHKDGKLVYYFIKNIKILNLMELGVNFKEEV 117 >gi|10956778 CadX [Staphylococcus lugdunensis] >gi|1658281|gb|AAB18271.1| (U74623) CadX [Staphylococcus lugdunensis] Length = 115 Score = 74.1 bits (179), Expect = 5e-13 Identities = 38/101 (37%), Positives = 62/101 (60%), Gaps = 1/101 (0%) Query: 5 CKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLSAI 64 C V H DK+ A S L ED+K ++ + + + + +LKI+ +L++ ELC CD+S I Sbjct: 7 CDVICVHEDKVNNALSFL-EDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLI 65 Query: 65 TKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIRE 105 K+SV++ SH LR+L ++ + K GK +Y + D+ IRE Sbjct: 66 LKMSVASTSHHLRLLYKNDVLDFYKKGKMAYYFIKDDEIRE 106 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.322 0.139 0.387 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39889569 Number of Sequences: 2977 Number of extensions: 1361384 Number of successful extensions: 4624 Number of sequences better than 1.0e-10: 14 Number of HSP's better than 0.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 4607 Number of HSP's gapped (non-prelim): 14 length of query: 118 length of database: 189,106,746 effective HSP length: 54 effective length of query: 64 effective length of database: 156,788,448 effective search space: 10034460672 effective search space used: 10034460672 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.9 bits) S2: 160 (66.7 bits)