BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0625 (PAB0625) DE:TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG
         (118 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75141 transcription repressor smtb homolog PAB0625 - Pyroc...   236  8e-62
pir||A75601 transcription repressor SmtB - Deinococcus radiodura...   104  3e-22
sp|P37374|CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOM...    96  1e-19
sp|Q55940|SMTB_SYNY3 TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG >gi|...    96  1e-19
dbj|BAB07756.1| (AP001520) cadmium-binding protein (cadmium effl...    86  1e-16
sp|Q56405|CADC_LISMO CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi...    86  1e-16
sp|P30340|SMTB_SYNP7 TRANSCRIPTIONAL REPRESSOR SMTB >gi|419637|p...    82  2e-15
sp|P30339|CADC_BACFI CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi...    81  4e-15
pir||C42707 cadmium resistance determinant/cation-binding protei...    81  4e-15
emb|CAB96928.1| (AJ251015) CadC protein [Stenotrophomonas maltop...    79  1e-14
sp|P20047|CADC_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi...    78  2e-14
pir||G69106 transcription regulator - Methanobacterium thermoaut...    78  2e-14
gb|AAB37344.1| (U78967) cadmium resistance regulatory protein [L...    77  7e-14
gi|10956778 CadX [Staphylococcus lugdunensis] >gi|1658281|gb|AAB...    74  5e-13

>pir||D75141 transcription repressor smtb homolog PAB0625 - Pyrococcus abyssi
           (strain Orsay) >gi|5458356|emb|CAB49845.1| (AJ248285)
           TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG [Pyrococcus
           abyssi]
           Length = 118
           
 Score =  236 bits (595), Expect = 8e-62
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD 60
           MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD
Sbjct: 1   MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD 60

Query: 61  LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118
           LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR
Sbjct: 61  LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118


>pir||A75601 transcription repressor SmtB - Deinococcus radiodurans  (strain R1)
           >gi|6460539|gb|AAF12245.1|AE001862_71 (AE001862)
           transcriptional repressor SmtB [Deinococcus radiodurans]
           Length = 125
           
 Score =  104 bits (258), Expect = 3e-22
 Identities = 49/114 (42%), Positives = 77/114 (66%), Gaps = 1/114 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           +VC++   H + + +A++ LP +      + F   LG+PTRL +L AL    ELC CDL+
Sbjct: 13  DVCEINCVHPEAVAQARAALPGEAHTAAATTFLKLLGDPTRLNLLSALSRT-ELCVCDLA 71

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116
           A+  LS SA+SHQLR+L+  ++V +RK+G+ V+YRL DEH+  ++R+AL+H  E
Sbjct: 72  AVVGLSESAVSHQLRLLRTGRLVAFRKEGRVVYYRLADEHVTTLIRSALDHARE 125


>sp|P37374|CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOMOLOG
           >gi|152977|gb|AAA26609.1| (L10909) cadmium resistance
           protein [Staphylococcus aureus]
           Length = 121
           
 Score = 96.0 bits (235), Expect = 1e-19
 Identities = 48/115 (41%), Positives = 72/115 (61%), Gaps = 1/115 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           ++C+V   H DK+  AK  L +    ++V+  F AL + TR+KI + L   GELC CD++
Sbjct: 4   DMCEVTYIHEDKVNRAKKDLAKQNP-MDVAKVFKALSDDTRVKIAYVLSLEGELCVCDVA 62

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
            I + S +  SH LR+LK+  I  YRK+GK V+Y LDDEH+++++  A  H  EV
Sbjct: 63  NIIESSTATASHHLRLLKNLGIAKYRKEGKLVYYSLDDEHVKQLVEKAFLHQREV 117


>sp|Q55940|SMTB_SYNY3 TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG >gi|7443999|pir||S77014
           transcription repressor smtB - Synechocystis sp. (strain
           PCC 6803) >gi|1001825|dbj|BAA10706.1| (D64005)
           transcriptional repressor SmtB [Synechocystis sp.]
           Length = 132
           
 Score = 96.0 bits (235), Expect = 1e-19
 Identities = 43/106 (40%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 11  HLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLSAITKLSVS 70
           HL+++ + +  +   ++  ++++FF AL +P+RL+++ AL    ELC CDL+A  K+S S
Sbjct: 26  HLEQVRQVQPEVMSLDQAQQMAEFFSALADPSRLRLMSALARQ-ELCVCDLAAAMKVSES 84

Query: 71  AISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116
           A+SHQLRIL+ +++V YR+ G+NV+Y L D H+  + R   +HL E
Sbjct: 85  AVSHQLRILRSQRLVKYRRVGRNVYYSLADNHVMNLYREVADHLQE 130


>dbj|BAB07756.1| (AP001520) cadmium-binding protein (cadmium efflux system accessory
           protein) [Bacillus halodurans]
           Length = 122
           
 Score = 86.2 bits (210), Expect = 1e-16
 Identities = 45/115 (39%), Positives = 69/115 (59%), Gaps = 1/115 (0%)

Query: 2   VEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDL 61
           ++ C V+    +K+ +  S   + E   +V+D F AL + TR+KI +AL++  ELC CD+
Sbjct: 4   LDTCDVFLYDKEKV-QLVSEAMKGENFAKVADMFKALADETRVKIAYALLQQEELCVCDV 62

Query: 62  SAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116
           + I   + +  SH LR L++  I   RK+GK VFY LDD+H+R IL  A+ H  E
Sbjct: 63  AHIIGATTATASHHLRHLRNLGIAKRRKEGKLVFYSLDDDHVRTILSMAVVHGKE 117


>sp|Q56405|CADC_LISMO CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|495647|gb|AAA25276.1|
           (L28104) accessory protein [Listeria monocytogenes]
           Length = 119
           
 Score = 85.8 bits (209), Expect = 1e-16
 Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 2   VEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDL 61
           V++C++     +K+   K+ L E  ++  +S  F  L + TR+KI++AL+   ELC CDL
Sbjct: 3   VDICEITCIDEEKVKRVKTGL-ETVEVTTISQIFKILSDETRVKIVYALLTENELCVCDL 61

Query: 62  SAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTAL 111
           + I + +V+A SH LR LK + I  YRKDGK V+Y L +E +R+ ++  L
Sbjct: 62  ANIVEATVAATSHHLRFLKKQGIANYRKDGKLVYYSLANERVRDRIKLIL 111


>sp|P30340|SMTB_SYNP7 TRANSCRIPTIONAL REPRESSOR SMTB >gi|419637|pir||S31197 smtB protein
           - Synechococcus sp. (strain PCC 7942)
           >gi|2781107|pdb|1SMT|B Chain B, Smtb Repressor From
           Synechococcus Pcc7942 >gi|2781106|pdb|1SMT|A Chain A,
           Smtb Repressor From Synechococcus Pcc7942
           >gi|46491|emb|CAA45872.1| (X64585) SmtB [Synechococcus
           PCC7942]
           Length = 122
           
 Score = 82.3 bits (200), Expect = 2e-15
 Identities = 39/88 (44%), Positives = 62/88 (70%), Gaps = 1/88 (1%)

Query: 31  VSDFFDALGNPTRLKILFALMEAGELCTCDLSAITKLSVSAISHQLRILKDRKIVTYRKD 90
           +++FF  L +P RL++L +L+   ELC  DL+    +S SA+SHQLR L++ ++V+YRK 
Sbjct: 36  LAEFFAVLADPNRLRLL-SLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94

Query: 91  GKNVFYRLDDEHIREILRTALNHLSEVR 118
           G++V+Y+L D HI  + + AL+HL E R
Sbjct: 95  GRHVYYQLQDHHIVALYQNALDHLQECR 122


>sp|P30339|CADC_BACFI CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|143752|gb|AAA22857.1|
           (M90750) cadmium-efflux system accessory protein
           [Bacillus firmus]
           Length = 122
           
 Score = 81.1 bits (197), Expect = 4e-15
 Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           + C+++    +K+   +  L   + I+ V+    A+ +  R KI +AL +  E C CD++
Sbjct: 5   DTCEIFCYDEEKVNRIQGDLKTID-IVSVAQMLKAIADENRAKITYALCQDEESCVCDIA 63

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
            I  ++ +  SH LR L  + IV YRK+GK  FY LDDEHIR+I+   L H  EV
Sbjct: 64  NIIGITAANASHHLRTLHKQGIVRYRKEGKLAFYSLDDEHIRQIMMIVLEHKKEV 118


>pir||C42707 cadmium resistance determinant/cation-binding protein CadC -
           Bacillus firmus
           Length = 122
           
 Score = 81.1 bits (197), Expect = 4e-15
 Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           + C+++    +K+   +  L   + I+ V+    A+ +  R KI +AL +  E C CD++
Sbjct: 5   DTCEIFCYDEEKVNRIQGDLKTID-IVSVAQMLKAIADENRAKITYALCQDEESCVCDIA 63

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
            I  ++ +  SH LR L  + IV YRK+GK  FY LDDEHIR+I+   L H  EV
Sbjct: 64  NIIGITAANASHHLRTLHKQGIVRYRKEGKLAFYSLDDEHIRQIMMIVLEHKKEV 118


>emb|CAB96928.1| (AJ251015) CadC protein [Stenotrophomonas maltophilia]
           Length = 122
           
 Score = 79.2 bits (192), Expect = 1e-14
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           + C+++    +K+   +  L +   I  VS    A+ +  R KI +AL +  ELC CD++
Sbjct: 5   DTCEIFCYDEEKVNRIQGDL-QTVDISGVSQMLKAIADENRAKITYALCQDEELCVCDIA 63

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118
            I  ++++  SH LR+L  + +V +RK+GK   Y LDDEHI +I+  AL H  EV+
Sbjct: 64  NILGVTIANASHHLRMLYKQGVVNFRKEGKLALYSLDDEHIGQIMMIALAHKKEVK 119


>sp|P20047|CADC_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|79864|pir||B32561 cadC
           protein - Staphylococcus aureus plasmid pI258
           >gi|986931|gb|AAB59153.1| (J04551) unknown protein
           [Plasmid pI258]
           Length = 122
           
 Score = 78.4 bits (190), Expect = 2e-14
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           + C+++    +K+   +  L +   I  VS    A+ +  R KI +AL +  ELC CD++
Sbjct: 5   DTCEIFCYDEEKVNRIQGDL-QTVDISGVSQILKAIADENRAKITYALCQDEELCVCDIA 63

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118
            I  ++++  SH LR L  + +V +RK+GK   Y L DEHIR+I+  AL H  EV+
Sbjct: 64  NILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKKEVK 119


>pir||G69106 transcription regulator - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622927|gb|AAB86261.1| (AE000934)
           transcriptional regulator [Methanobacterium
           thermoautotrophicum]
           Length = 119
           
 Score = 78.4 bits (190), Expect = 2e-14
 Identities = 36/105 (34%), Positives = 63/105 (59%), Gaps = 1/105 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           ++C++     ++++  ++ +P  + I  + D F  L  PTRLKIL AL     LC C+L+
Sbjct: 4   DICEIEHTDRERVLRVRAEMPSIDDIRGICDIFKILSEPTRLKILMAL-SLDSLCVCELA 62

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREIL 107
           ++  ++ SA+SHQLRIL++  +V Y +DGK   Y L D  + + +
Sbjct: 63  SLLDVTQSAVSHQLRILRNAGMVDYERDGKMARYYLRDNMVVDFI 107


>gb|AAB37344.1| (U78967) cadmium resistance regulatory protein [Lactococcus lactis]
           >gi|9789449|gb|AAF98301.1|AF243383_2 (AF243383) cadmium
           resistance regulator CadC [Lactococcus lactis subsp.
           lactis]
           Length = 119
           
 Score = 76.9 bits (186), Expect = 7e-14
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 3   EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
           E+C++   H DK+  AKS+L   +    VS FF  L +  RLKI+ AL+   ELC CD++
Sbjct: 4   EICEITCIHEDKVNRAKSKLANFDTP-SVSGFFKILSDENRLKIVHALVHEDELCVCDIA 62

Query: 63  AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
            I   SV+  SH L  LK   +V   KDGK V+Y + +  I  ++   +N   EV
Sbjct: 63  NIIDASVATTSHHLNSLKKLGVVDSHKDGKLVYYFIKNIKILNLMELGVNFKEEV 117


>gi|10956778 CadX [Staphylococcus lugdunensis] >gi|1658281|gb|AAB18271.1|
           (U74623) CadX [Staphylococcus lugdunensis]
           Length = 115
           
 Score = 74.1 bits (179), Expect = 5e-13
 Identities = 38/101 (37%), Positives = 62/101 (60%), Gaps = 1/101 (0%)

Query: 5   CKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLSAI 64
           C V   H DK+  A S L ED+K  ++ +  + + +  +LKI+ +L++  ELC CD+S I
Sbjct: 7   CDVICVHEDKVNNALSFL-EDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLI 65

Query: 65  TKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIRE 105
            K+SV++ SH LR+L    ++ + K GK  +Y + D+ IRE
Sbjct: 66  LKMSVASTSHHLRLLYKNDVLDFYKKGKMAYYFIKDDEIRE 106


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.139    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39889569
Number of Sequences: 2977
Number of extensions: 1361384
Number of successful extensions: 4624
Number of sequences better than 1.0e-10: 14
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4607
Number of HSP's gapped (non-prelim): 14
length of query: 118
length of database: 189,106,746
effective HSP length: 54
effective length of query: 64
effective length of database: 156,788,448
effective search space: 10034460672
effective search space used: 10034460672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)