BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0625 (PAB0625) DE:TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG
(118 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75141 transcription repressor smtb homolog PAB0625 - Pyroc... 236 8e-62
pir||A75601 transcription repressor SmtB - Deinococcus radiodura... 104 3e-22
sp|P37374|CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOM... 96 1e-19
sp|Q55940|SMTB_SYNY3 TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG >gi|... 96 1e-19
dbj|BAB07756.1| (AP001520) cadmium-binding protein (cadmium effl... 86 1e-16
sp|Q56405|CADC_LISMO CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi... 86 1e-16
sp|P30340|SMTB_SYNP7 TRANSCRIPTIONAL REPRESSOR SMTB >gi|419637|p... 82 2e-15
sp|P30339|CADC_BACFI CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi... 81 4e-15
pir||C42707 cadmium resistance determinant/cation-binding protei... 81 4e-15
emb|CAB96928.1| (AJ251015) CadC protein [Stenotrophomonas maltop... 79 1e-14
sp|P20047|CADC_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi... 78 2e-14
pir||G69106 transcription regulator - Methanobacterium thermoaut... 78 2e-14
gb|AAB37344.1| (U78967) cadmium resistance regulatory protein [L... 77 7e-14
gi|10956778 CadX [Staphylococcus lugdunensis] >gi|1658281|gb|AAB... 74 5e-13
>pir||D75141 transcription repressor smtb homolog PAB0625 - Pyrococcus abyssi
(strain Orsay) >gi|5458356|emb|CAB49845.1| (AJ248285)
TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG [Pyrococcus
abyssi]
Length = 118
Score = 236 bits (595), Expect = 8e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD 60
MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD
Sbjct: 1 MVEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCD 60
Query: 61 LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118
LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR
Sbjct: 61 LSAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118
>pir||A75601 transcription repressor SmtB - Deinococcus radiodurans (strain R1)
>gi|6460539|gb|AAF12245.1|AE001862_71 (AE001862)
transcriptional repressor SmtB [Deinococcus radiodurans]
Length = 125
Score = 104 bits (258), Expect = 3e-22
Identities = 49/114 (42%), Positives = 77/114 (66%), Gaps = 1/114 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
+VC++ H + + +A++ LP + + F LG+PTRL +L AL ELC CDL+
Sbjct: 13 DVCEINCVHPEAVAQARAALPGEAHTAAATTFLKLLGDPTRLNLLSALSRT-ELCVCDLA 71
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116
A+ LS SA+SHQLR+L+ ++V +RK+G+ V+YRL DEH+ ++R+AL+H E
Sbjct: 72 AVVGLSESAVSHQLRLLRTGRLVAFRKEGRVVYYRLADEHVTTLIRSALDHARE 125
>sp|P37374|CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOMOLOG
>gi|152977|gb|AAA26609.1| (L10909) cadmium resistance
protein [Staphylococcus aureus]
Length = 121
Score = 96.0 bits (235), Expect = 1e-19
Identities = 48/115 (41%), Positives = 72/115 (61%), Gaps = 1/115 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
++C+V H DK+ AK L + ++V+ F AL + TR+KI + L GELC CD++
Sbjct: 4 DMCEVTYIHEDKVNRAKKDLAKQNP-MDVAKVFKALSDDTRVKIAYVLSLEGELCVCDVA 62
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
I + S + SH LR+LK+ I YRK+GK V+Y LDDEH+++++ A H EV
Sbjct: 63 NIIESSTATASHHLRLLKNLGIAKYRKEGKLVYYSLDDEHVKQLVEKAFLHQREV 117
>sp|Q55940|SMTB_SYNY3 TRANSCRIPTIONAL REPRESSOR SMTB HOMOLOG >gi|7443999|pir||S77014
transcription repressor smtB - Synechocystis sp. (strain
PCC 6803) >gi|1001825|dbj|BAA10706.1| (D64005)
transcriptional repressor SmtB [Synechocystis sp.]
Length = 132
Score = 96.0 bits (235), Expect = 1e-19
Identities = 43/106 (40%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 11 HLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLSAITKLSVS 70
HL+++ + + + ++ ++++FF AL +P+RL+++ AL ELC CDL+A K+S S
Sbjct: 26 HLEQVRQVQPEVMSLDQAQQMAEFFSALADPSRLRLMSALARQ-ELCVCDLAAAMKVSES 84
Query: 71 AISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116
A+SHQLRIL+ +++V YR+ G+NV+Y L D H+ + R +HL E
Sbjct: 85 AVSHQLRILRSQRLVKYRRVGRNVYYSLADNHVMNLYREVADHLQE 130
>dbj|BAB07756.1| (AP001520) cadmium-binding protein (cadmium efflux system accessory
protein) [Bacillus halodurans]
Length = 122
Score = 86.2 bits (210), Expect = 1e-16
Identities = 45/115 (39%), Positives = 69/115 (59%), Gaps = 1/115 (0%)
Query: 2 VEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDL 61
++ C V+ +K+ + S + E +V+D F AL + TR+KI +AL++ ELC CD+
Sbjct: 4 LDTCDVFLYDKEKV-QLVSEAMKGENFAKVADMFKALADETRVKIAYALLQQEELCVCDV 62
Query: 62 SAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSE 116
+ I + + SH LR L++ I RK+GK VFY LDD+H+R IL A+ H E
Sbjct: 63 AHIIGATTATASHHLRHLRNLGIAKRRKEGKLVFYSLDDDHVRTILSMAVVHGKE 117
>sp|Q56405|CADC_LISMO CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|495647|gb|AAA25276.1|
(L28104) accessory protein [Listeria monocytogenes]
Length = 119
Score = 85.8 bits (209), Expect = 1e-16
Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 2 VEVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDL 61
V++C++ +K+ K+ L E ++ +S F L + TR+KI++AL+ ELC CDL
Sbjct: 3 VDICEITCIDEEKVKRVKTGL-ETVEVTTISQIFKILSDETRVKIVYALLTENELCVCDL 61
Query: 62 SAITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTAL 111
+ I + +V+A SH LR LK + I YRKDGK V+Y L +E +R+ ++ L
Sbjct: 62 ANIVEATVAATSHHLRFLKKQGIANYRKDGKLVYYSLANERVRDRIKLIL 111
>sp|P30340|SMTB_SYNP7 TRANSCRIPTIONAL REPRESSOR SMTB >gi|419637|pir||S31197 smtB protein
- Synechococcus sp. (strain PCC 7942)
>gi|2781107|pdb|1SMT|B Chain B, Smtb Repressor From
Synechococcus Pcc7942 >gi|2781106|pdb|1SMT|A Chain A,
Smtb Repressor From Synechococcus Pcc7942
>gi|46491|emb|CAA45872.1| (X64585) SmtB [Synechococcus
PCC7942]
Length = 122
Score = 82.3 bits (200), Expect = 2e-15
Identities = 39/88 (44%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 31 VSDFFDALGNPTRLKILFALMEAGELCTCDLSAITKLSVSAISHQLRILKDRKIVTYRKD 90
+++FF L +P RL++L +L+ ELC DL+ +S SA+SHQLR L++ ++V+YRK
Sbjct: 36 LAEFFAVLADPNRLRLL-SLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94
Query: 91 GKNVFYRLDDEHIREILRTALNHLSEVR 118
G++V+Y+L D HI + + AL+HL E R
Sbjct: 95 GRHVYYQLQDHHIVALYQNALDHLQECR 122
>sp|P30339|CADC_BACFI CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|143752|gb|AAA22857.1|
(M90750) cadmium-efflux system accessory protein
[Bacillus firmus]
Length = 122
Score = 81.1 bits (197), Expect = 4e-15
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
+ C+++ +K+ + L + I+ V+ A+ + R KI +AL + E C CD++
Sbjct: 5 DTCEIFCYDEEKVNRIQGDLKTID-IVSVAQMLKAIADENRAKITYALCQDEESCVCDIA 63
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
I ++ + SH LR L + IV YRK+GK FY LDDEHIR+I+ L H EV
Sbjct: 64 NIIGITAANASHHLRTLHKQGIVRYRKEGKLAFYSLDDEHIRQIMMIVLEHKKEV 118
>pir||C42707 cadmium resistance determinant/cation-binding protein CadC -
Bacillus firmus
Length = 122
Score = 81.1 bits (197), Expect = 4e-15
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
+ C+++ +K+ + L + I+ V+ A+ + R KI +AL + E C CD++
Sbjct: 5 DTCEIFCYDEEKVNRIQGDLKTID-IVSVAQMLKAIADENRAKITYALCQDEESCVCDIA 63
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
I ++ + SH LR L + IV YRK+GK FY LDDEHIR+I+ L H EV
Sbjct: 64 NIIGITAANASHHLRTLHKQGIVRYRKEGKLAFYSLDDEHIRQIMMIVLEHKKEV 118
>emb|CAB96928.1| (AJ251015) CadC protein [Stenotrophomonas maltophilia]
Length = 122
Score = 79.2 bits (192), Expect = 1e-14
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
+ C+++ +K+ + L + I VS A+ + R KI +AL + ELC CD++
Sbjct: 5 DTCEIFCYDEEKVNRIQGDL-QTVDISGVSQMLKAIADENRAKITYALCQDEELCVCDIA 63
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118
I ++++ SH LR+L + +V +RK+GK Y LDDEHI +I+ AL H EV+
Sbjct: 64 NILGVTIANASHHLRMLYKQGVVNFRKEGKLALYSLDDEHIGQIMMIALAHKKEVK 119
>sp|P20047|CADC_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN >gi|79864|pir||B32561 cadC
protein - Staphylococcus aureus plasmid pI258
>gi|986931|gb|AAB59153.1| (J04551) unknown protein
[Plasmid pI258]
Length = 122
Score = 78.4 bits (190), Expect = 2e-14
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
+ C+++ +K+ + L + I VS A+ + R KI +AL + ELC CD++
Sbjct: 5 DTCEIFCYDEEKVNRIQGDL-QTVDISGVSQILKAIADENRAKITYALCQDEELCVCDIA 63
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEVR 118
I ++++ SH LR L + +V +RK+GK Y L DEHIR+I+ AL H EV+
Sbjct: 64 NILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKKEVK 119
>pir||G69106 transcription regulator - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622927|gb|AAB86261.1| (AE000934)
transcriptional regulator [Methanobacterium
thermoautotrophicum]
Length = 119
Score = 78.4 bits (190), Expect = 2e-14
Identities = 36/105 (34%), Positives = 63/105 (59%), Gaps = 1/105 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
++C++ ++++ ++ +P + I + D F L PTRLKIL AL LC C+L+
Sbjct: 4 DICEIEHTDRERVLRVRAEMPSIDDIRGICDIFKILSEPTRLKILMAL-SLDSLCVCELA 62
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREIL 107
++ ++ SA+SHQLRIL++ +V Y +DGK Y L D + + +
Sbjct: 63 SLLDVTQSAVSHQLRILRNAGMVDYERDGKMARYYLRDNMVVDFI 107
>gb|AAB37344.1| (U78967) cadmium resistance regulatory protein [Lactococcus lactis]
>gi|9789449|gb|AAF98301.1|AF243383_2 (AF243383) cadmium
resistance regulator CadC [Lactococcus lactis subsp.
lactis]
Length = 119
Score = 76.9 bits (186), Expect = 7e-14
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 3 EVCKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLS 62
E+C++ H DK+ AKS+L + VS FF L + RLKI+ AL+ ELC CD++
Sbjct: 4 EICEITCIHEDKVNRAKSKLANFDTP-SVSGFFKILSDENRLKIVHALVHEDELCVCDIA 62
Query: 63 AITKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIREILRTALNHLSEV 117
I SV+ SH L LK +V KDGK V+Y + + I ++ +N EV
Sbjct: 63 NIIDASVATTSHHLNSLKKLGVVDSHKDGKLVYYFIKNIKILNLMELGVNFKEEV 117
>gi|10956778 CadX [Staphylococcus lugdunensis] >gi|1658281|gb|AAB18271.1|
(U74623) CadX [Staphylococcus lugdunensis]
Length = 115
Score = 74.1 bits (179), Expect = 5e-13
Identities = 38/101 (37%), Positives = 62/101 (60%), Gaps = 1/101 (0%)
Query: 5 CKVYEEHLDKIIEAKSRLPEDEKILEVSDFFDALGNPTRLKILFALMEAGELCTCDLSAI 64
C V H DK+ A S L ED+K ++ + + + + +LKI+ +L++ ELC CD+S I
Sbjct: 7 CDVICVHEDKVNNALSFL-EDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVCDISLI 65
Query: 65 TKLSVSAISHQLRILKDRKIVTYRKDGKNVFYRLDDEHIRE 105
K+SV++ SH LR+L ++ + K GK +Y + D+ IRE
Sbjct: 66 LKMSVASTSHHLRLLYKNDVLDFYKKGKMAYYFIKDDEIRE 106
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.139 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39889569
Number of Sequences: 2977
Number of extensions: 1361384
Number of successful extensions: 4624
Number of sequences better than 1.0e-10: 14
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4607
Number of HSP's gapped (non-prelim): 14
length of query: 118
length of database: 189,106,746
effective HSP length: 54
effective length of query: 64
effective length of database: 156,788,448
effective search space: 10034460672
effective search space used: 10034460672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)