BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0627 (appA) DE:OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR
(644 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75141 oligopeptide-binding protein appa precursor PAB0627 ... 1375 0.0
pir||E72282 oligopeptide ABC transporter, periplasmic oligopepti... 644 0.0
pir||C72278 hypothetical protein TM1226 - Thermotoga maritima (s... 606 e-172
pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii ... 465 e-130
pir||A75069 dipeptide transport protein precursor (dip eptide-bi... 453 e-126
pir||A72429 oligopeptide ABC transporter, periplasmic oligopepti... 343 3e-93
pir||B71130 probable oligopeptide binding protein APPA - Pyrococ... 211 2e-53
pir||H82301 peptide ABC transporter, periplasmic peptide-binding... 196 5e-49
gb|AAK43144.1| ABC transporter, binding protein [Sulfolobus solf... 178 2e-43
emb|CAC12450.1| (AL445067) dipeptide ABC transport system, perip... 175 1e-42
pir||A72393 hypothetical protein TM0300 - Thermotoga maritima (s... 136 1e-30
pir||G72420 oligopeptide ABC transporter, periplasmic oligopepti... 130 4e-29
sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR... 124 3e-27
gb|AAK43153.1| Maltose ABC transporter, maltose binding protein ... 124 3e-27
pir||C70425 transporter (extracellular solute binding protein fa... 123 4e-27
gb|AAC38214.1| (AF042494) unknown protein [Sulfolobus solfataricus] 119 9e-26
dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-... 117 3e-25
pir||T44635 dipeptide transporter protein dppA [imported] - Baci... 113 5e-24
pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fra... 110 6e-23
pir||A72424 hypothetical protein TM0056 - Thermotoga maritima (s... 104 4e-21
pir||D72391 oligopeptide ABC transporter, periplasmic oligopepti... 101 2e-20
pir||F71951 periplasmic dipeptide transport substrate-binding pr... 101 4e-20
pir||E72451 probable transport system binding protein APE2257 - ... 100 8e-20
dbj|BAB06745.1| (AP001517) oligopeptide ABC transpoter (oligopep... 100 8e-20
gb|AAC46281.1| (AF000365) oligopeptide permease homolog AV [Borr... 99 1e-19
gi|11496929 oligopeptide ABC transporter, periplasmic oligopepti... 99 1e-19
sp|P75797|YLIB_ECOLI PUTATIVE BINDING PROTEIN YLIB PRECURSOR >gi... 98 4e-19
dbj|BAA35525.1| (D90721) Heme-binding protein a precursor (hemin... 98 4e-19
pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-bin... 96 9e-19
dbj|BAA94699.1| (AB026907) dipeptide transporter DppA homolog [O... 92 1e-17
dbj|BAB03750.1| (AP001507) oligopeptide ABC transporter (oligope... 92 2e-17
dbj|BAB04066.1| (AP001508) oligopeptide ABC transporter (oligope... 90 5e-17
dbj|BAB07355.1| (AP001519) oligopeptide ABC transporter (oligope... 90 5e-17
dbj|BAB06473.1| (AP001516) oligopeptide ABC transporter (oligope... 90 5e-17
pir||B71212 hypothetical protein PH1962 - Pyrococcus horikoshii ... 90 9e-17
sp|Q47622|SAPA_ECOLI PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA ... 89 2e-16
dbj|BAA14855.1| (D90767) Peptide transport periplasmic protein S... 89 2e-16
sp|P36634|SAPA_SALTY PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA ... 89 2e-16
pir||F82442 probable peptide ABC transporter, periplasmic peptid... 88 4e-16
sp|P55691|Y4WM_RHISN HYPOTHETICAL PROTEIN Y4WM PRECURSOR >gi|218... 88 4e-16
gb|AAC69837.1| (AF076683) oligopeptide transporter putative subs... 87 8e-16
dbj|BAB04286.1| (AP001509) nickel transport system (nickel-bindi... 86 1e-15
dbj|BAA15142.1| (D90789) Periplasmic dipeptide transport protein... 86 1e-15
sp|P76128|YDDS_ECOLI PUTATIVE BINDING PROTEIN YDDS PRECURSOR >gi... 86 1e-15
pir||B72289 oligopeptide ABC transporter, periplasmic oligopepti... 85 2e-15
gb|AAB34223.1| (S75873) 60 kda antigen [Borrelia coriaceae] 85 2e-15
pir||B75027 hypothetical protein PAB1193 - Pyrococcus abyssi (st... 85 3e-15
pir||G83419 probable binding protein component of ABC transporte... 84 5e-15
sp|P33590|NIKA_ECOLI NICKEL-BINDING PERIPLASMIC PROTEIN PRECURSO... 83 7e-15
gi|10955080 agaA [Agrobacterium tumefaciens] >gi|11277227|pir||T... 83 1e-14
pir||A82356 peptide ABC transporter, periplasmic peptide-binding... 82 2e-14
pir||S77182 oligopeptide transport system permease protein appA ... 82 2e-14
sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRE... 82 2e-14
gb|AAC67217.1| (U78968) surface lipoprotein DppA [Streptococcus ... 82 2e-14
emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii] 81 3e-14
gb|AAK42787.1| ABC transporter, periplasmic component [Sulfolobu... 81 3e-14
pir||T35938 probable substrate binding protein - Streptomyces co... 81 5e-14
gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic bind... 80 1e-13
pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycy... 80 1e-13
pir||A70141 oligopeptide ABC transporter, periplasmic oligopepti... 79 1e-13
emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis] 78 2e-13
pdb|1DPE| Dipeptide-Binding Protein 78 3e-13
gi|10955093 moaA [Agrobacterium tumefaciens] >gi|11277228|pir||T... 78 3e-13
gb|AAG09257.1| (AF176664) EppA precursor [EDTA-degrading bacteri... 78 3e-13
pir||A48650 agrocinopine utilization periplasmic binding protein... 78 4e-13
gi|10954940 Probable accA [Agrobacterium tumefaciens] >gi|649829... 78 4e-13
pir||S16651 dciAE protein - Bacillus subtilis 78 4e-13
dbj|BAA75392.1| (AB013376) AppA [Bacillus halodurans] 77 5e-13
gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Bo... 77 5e-13
pir||G69618 dipeptide ABC transporter (dipeptide-binding protein... 75 2e-12
sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR 75 2e-12
emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii] 75 2e-12
dbj|BAB13784.1| (AB038238) NikA [Vibrio parahaemolyticus] 75 2e-12
pir||F81253 probable peptide ABC-transport system periplasmic pe... 75 3e-12
pir||H83083 probable binding protein component of ABC transporte... 74 5e-12
gi|10954707 hypothetical ABC-transporter gene~similar to PH0807 ... 73 8e-12
gb|AAG20588.1| (AE005129) dipeptide ABC transporter ATP-binding;... 73 1e-11
dbj|BAB05793.1| (AP001514) oligopeptide ABC transporter (oligope... 72 2e-11
pir||G83388 probable binding protein component of ABC transporte... 71 3e-11
sp|P06109|XP55_STRLI XP55 PROTEIN PRECURSOR >gi|80816|pir||S0738... 71 5e-11
gi|11499356 dipeptide ABC transporter, dipeptide-binding protein... 70 7e-11
>pir||H75141 oligopeptide-binding protein appa precursor PAB0627 - Pyrococcus
abyssi (strain Orsay) >gi|5458360|emb|CAB49849.1|
(AJ248285) OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR
[Pyrococcus abyssi]
Length = 644
Score = 1375 bits (3519), Expect = 0.0
Identities = 644/644 (100%), Positives = 644/644 (100%)
Query: 1 MHTLEVQRMKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPT 60
MHTLEVQRMKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPT
Sbjct: 1 MHTLEVQRMKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPT 60
Query: 61 VSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLT 120
VSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLT
Sbjct: 61 VSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLT 120
Query: 121 AEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIP 180
AEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIP
Sbjct: 121 AEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIP 180
Query: 181 EHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYV 240
EHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYV
Sbjct: 181 EHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYV 240
Query: 241 IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQK 300
IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQK
Sbjct: 241 IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQK 300
Query: 301 PPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFT 360
PPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFT
Sbjct: 301 PPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFT 360
Query: 361 YDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVG 420
YDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVG
Sbjct: 361 YDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVG 420
Query: 421 IRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGN 480
IRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGN
Sbjct: 421 IRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGN 480
Query: 481 WGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWT 540
WGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWT
Sbjct: 481 WGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWT 540
Query: 541 NWPTEHNPYALPITWQNYWQMGGLKVLLNIKPAKATTTSSPTTTPTKTTSSPTSTPTPTQ 600
NWPTEHNPYALPITWQNYWQMGGLKVLLNIKPAKATTTSSPTTTPTKTTSSPTSTPTPTQ
Sbjct: 541 NWPTEHNPYALPITWQNYWQMGGLKVLLNIKPAKATTTSSPTTTPTKTTSSPTSTPTPTQ 600
Query: 601 TPSTSSPTATSTSPTETTTKGGICGPALLVGIAVVPILLRKRRK 644
TPSTSSPTATSTSPTETTTKGGICGPALLVGIAVVPILLRKRRK
Sbjct: 601 TPSTSSPTATSTSPTETTTKGGICGPALLVGIAVVPILLRKRRK 644
>pir||E72282 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981776|gb|AAD36298.1|AE001778_19 (AE001778)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 557
Score = 644 bits (1643), Expect = 0.0
Identities = 303/565 (53%), Positives = 392/565 (68%), Gaps = 12/565 (2%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTG 68
MK+ + +V+ L ++S+ Q + RN+TLY GG LWS P+N+NP W AV G
Sbjct: 1 MKRFLVVLVLVLALVSVFGQTF--------ERNKTLYWGGALWSPPSNWNPFTPWNAVAG 52
Query: 69 TIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTF 128
TIGL+YE LF+YDPL DK EPWLAE G+W+S+N Y + L++GL WQDG PLTA+DV FTF
Sbjct: 53 TIGLVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLRWQDGVPLTADDVVFTF 112
Query: 129 DYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNID 188
+ AK++ G+SYSP+W WL ++ VD RT+ F+FS+P Y+EWK L N I+P+HIW+N
Sbjct: 113 EIAKKYTGISYSPVWNWLGRIERVDERTLKFVFSDPRYQEWKQMLINTPIVPKHIWENKT 172
Query: 189 KPESF-ANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYG-KPAPKYIVYVIVYSNN 246
+ E A ENP+GSG Y + R + +N WWGI+ G P P+ IV + V SNN
Sbjct: 173 EEEVLQAANENPVGSGPYYVESWADDRCVFKKNGNWWGIRELGYDPKPERIVELRVLSNN 232
Query: 247 LALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNP 306
+A+ ML+KG+LDWSNFF+PGVP +K YGIVTWY+ PY LP NTA +++N K PL+ P
Sbjct: 233 VAVGMLMKGELDWSNFFLPGVPVLKKAYGIVTWYENAPYMLPANTAGIYINVNKYPLSIP 292
Query: 307 MFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKA 366
FRRA+AYAINP++I RA +N V A+P G+L P + K Y E V KYGF YDP A
Sbjct: 293 EFRRAMAYAINPEKIVTRAYENMVTAANPAGIL-PLPGYMKYYPKEVVDKYGFKYDPEMA 351
Query: 367 NEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPK 426
+ILD+LG+KD+N DG+RE P+GKP K TIE PYGWTDWM + I+E L VGI V+PK
Sbjct: 352 KKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPK 411
Query: 427 FPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKN 486
+PDY KY DDL G FD+I+NNF + V AT W +FN VFYPD A + +YSGN+G+Y N
Sbjct: 412 YPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYPD-AVESEYSYSGNFGKYAN 470
Query: 487 ERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWTNWPTEH 546
V LL +N D+ K + +L EI LKDLP+IPL YNGAWF+AS WTNWPTE
Sbjct: 471 PEVETLLDELNRSNDDAKIKEVVAKLSEILLKDLPFIPLWYNGAWFQASEAVWTNWPTEK 530
Query: 547 NPYALPITWQNYWQMGGLKVLLNIK 571
NPYA+PI W +WQ+ G+K L I+
Sbjct: 531 NPYAVPIGWNGWWQLTGIKTLFGIE 555
>pir||C72278 hypothetical protein TM1226 - Thermotoga maritima (strain MSB8)
>gi|4981780|gb|AAD36301.1|AE001779_3 (AE001779)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein, putative [Thermotoga
maritima]
Length = 562
Score = 606 bits (1545), Expect = e-172
Identities = 288/570 (50%), Positives = 378/570 (65%), Gaps = 14/570 (2%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTG 68
MK+ + VV S+ +Q L RNET+Y GG LWS P+N+NP W AV G
Sbjct: 3 MKRFLLVFVVVFLFSSLFSQ--------VLERNETMYYGGSLWSPPSNWNPFTPWNAVPG 54
Query: 69 TIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTF 128
T GL+YET+F YDPL +PWLAE G+W+ TYRVVL+EG+ W D PLT+EDV+FTF
Sbjct: 55 TTGLVYETMFFYDPLTGNFDPWLAEKGEWLDSKTYRVVLREGIYWHDNVPLTSEDVRFTF 114
Query: 129 DYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNID 188
+ AK++KG+ YS +W WL ++ DNRTV F+F +P Y EW LY + I+P+HIW+ D
Sbjct: 115 EIAKKYKGIHYSSVWEWLDHIETPDNRTVIFVFKDPRYHEWNELLYTLPIVPKHIWEEKD 174
Query: 189 KPESF-ANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYG-KPAPKYIVYVIVYSNN 246
+ ++ E P+GSG Y + DQ + I R + WWG K G KPAPKY+V V V SNN
Sbjct: 175 ETTILQSSNEYPLGSGPYVAHSWDQNKMIFERFENWWGTKVMGVKPAPKYVVIVRVLSNN 234
Query: 247 LALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNP 306
+AL ML+KG+LD+SNF +PGVP +K Y + TWYD+ PYHL LFLN +K PL+ P
Sbjct: 235 VALGMLMKGELDFSNFMLPGVPILKKVYNLNTWYDEPPYHLSSTVVGLFLNARKYPLSLP 294
Query: 307 MFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKA 366
FRRAIA +IN I R + V ADP G L + V+ K Y E V+K+GF YDP +A
Sbjct: 295 EFRRAIAMSINADPIVQRVYEGAVLKADPLGFLPN-SVWMKYYPKEVVEKHGFKYDPEEA 353
Query: 367 NEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPK 426
ILD+LG++D+NGDG+RETPDGKP+K TIE PYGWTDWM+ +VI +QL++VGI +P
Sbjct: 354 KSILDKLGFRDVNGDGFRETPDGKPIKLTIECPYGWTDWMQAIQVIVDQLKVVGINAEPY 413
Query: 427 FPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKN 486
FPD KY++++ KG FD+ +N G+ + +TPW +FN +FYPD A + +Y+GN+GRY+N
Sbjct: 414 FPDSSKYYENMYKGEFDIEMNANGTGISSTPWTYFNTIFYPD-ALESEFSYTGNYGRYQN 472
Query: 487 ERVAELLRLINTEKDEN--KKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWTNWPT 544
V LL +N +N K + +L EI LKDLP+IPL Y F WTNWP
Sbjct: 473 PEVESLLEELNRTPLDNVEKVTELCGKLGEILLKDLPFIPLWYGAMAFITQDNVWTNWPN 532
Query: 545 EHNPYALPITWQNYWQMGGLKVLLNIKPAK 574
EHNPYA P W N+WQ G LK+L N+KPAK
Sbjct: 533 EHNPYAWPCGWANWWQTGALKILFNLKPAK 562
>pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii
>gi|3256907|dbj|BAA29590.1| (AP000002) 641aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 641
Score = 465 bits (1184), Expect = e-130
Identities = 267/649 (41%), Positives = 384/649 (59%), Gaps = 28/649 (4%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTG 68
MKK + ++V +L VV +LPR ETLY S P N NP + + +
Sbjct: 6 MKKYLVIVLVATLLLGNLG---VVLAAEELPREETLYTANS--SPPTNANP-LQGSNIIP 59
Query: 69 TIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTF 128
GL++E LF+ + +K +L PWLA+ GKW+SDN + V L+EG WQDGKPLTA DVKF+F
Sbjct: 60 IAGLVFEPLFMLNFMKTELVPWLADYGKWVSDNVFEVKLREGTRWQDGKPLTANDVKFSF 119
Query: 129 DYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFS-EPHYEEWKYWLYNIAIIPEHIWKNI 187
+Y E GL +G LKE+KVVD+RTV F+FS P+ W+ LY++ I+PEHI+KNI
Sbjct: 120 EYY-EKAGLKDWSRYG-LKEIKVVDDRTVQFVFSGTPNVWAWRNELYSVLILPEHIFKNI 177
Query: 188 DKPE----SFANTENP--IGSGMYKLYKT-DQMRFILVRNDKWWGIKYYGKPAPKYIVYV 240
D + +F E +GSG YKLYK +Q + I VRND WWG KY+G P+PKYIV +
Sbjct: 178 DPQKVIHMTFLGDEQKYLVGSGPYKLYKVIEQQKAIFVRNDNWWGAKYFGLPSPKYIVQL 237
Query: 241 IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQK 300
V SN+ A +M +KGDLD +++ V K IV+W D+ PY P+ ++ N +
Sbjct: 238 YVGSNDQAANMFLKGDLDVGTYYVDIVELKKKNPHIVSWLDRPPYFPPVVPVIMYFNVKH 297
Query: 301 PPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFT 360
PL+NP+ R+AIA AI P +I + + + P G ++ P +KI + ++KYG+
Sbjct: 298 KPLDNPLVRKAIAEAICPAQIVQQGPISDLPDQTPLGNVMK-PWKEKIGVSQLIEKYGWR 356
Query: 361 Y-DPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMV 419
Y +P +A ++LD+ G KD++GDG RE +GK T +DWM+ +I QL+ V
Sbjct: 357 YCNPTEAAKLLDEAGIKDVDGDGIREY-NGKDFVLTFAACGVCSDWMQAVEIIVNQLKAV 415
Query: 420 GIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSG 479
GI+VD K D+G G FD+ ++ G+ +++ ++Y + K
Sbjct: 416 GIKVDVKKYDWGTMVSKQQAGEFDLTMHWAGTFKPDPYSVYYDLLYYKN----DKEKGGA 471
Query: 480 NWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYW 539
N+G Y N +V ELL + DE K++Q EL +I+L+D+P +PL ++EA+TQYW
Sbjct: 472 NFGNYYNPKVNELLDELAKTPDEAKQVQLLAELTKIWLQDVPAVPLYMGTLFYEANTQYW 531
Query: 540 TNWPTEHNPYALPITWQNYWQMGGLKVLLNIKPAKATTTSSPTTTPTKT---TSSPTSTP 596
NWP E NPY +PI W + G L ++PAKA T ++ T T T T + T
Sbjct: 532 ANWPNEDNPYGVPIFWPGFGTWGTALAFLGVRPAKAITPTTSTIVQTVTKEKTETVTQEK 591
Query: 597 TPTQTPS-TSSPTAT-STSPTETTTKGGICGPALLVGIAVVPILLRKRR 643
T +T + T SP+ T +T+PT TTTKGG+CGPA LVG+ VVP+LLR+RR
Sbjct: 592 TEVKTVTVTKSPSPTKTTTPTTTTTKGGVCGPAALVGLVVVPLLLRRRR 640
>pir||A75069 dipeptide transport protein precursor (dip eptide-binding protein)
PAB1343 - Pyrococcus abyssi (strain Orsay)
>gi|5458959|emb|CAB50446.1| (AJ248287) DIPEPTIDE
TRANSPORT PROTEIN PRECURSOR (DIP EPTIDE-BINDING PROTEIN)
[Pyrococcus abyssi]
Length = 633
Score = 453 bits (1153), Expect = e-126
Identities = 255/649 (39%), Positives = 376/649 (57%), Gaps = 30/649 (4%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTG 68
MKK +A +++GLF LS +V+ +LPR +TLY S P N NP V + +
Sbjct: 1 MKKFLATLLIGLFFLSTIG---IVSAAEELPREQTLYTANS--SPPTNANP-VYGSNIIP 54
Query: 69 TIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTF 128
GL++E LF + +K +L PWLAE GKW+S N + V L+EG WQDGKPLTAEDVKF+F
Sbjct: 55 IAGLVFEPLFQLNFMKTELVPWLAEYGKWVSSNVFEVKLREGTKWQDGKPLTAEDVKFSF 114
Query: 129 DYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSE-PHYEEWKYWLYNIAIIPEHIWKNI 187
+Y E GL +G L+E+KVVD+RT+ F+F + P+ W+ LY + I+PEH++KNI
Sbjct: 115 EYY-EKVGLKNWSEYG-LREIKVVDDRTIQFVFEKTPNVWAWRNQLYRVLILPEHVFKNI 172
Query: 188 D----KPESFANTENP--IGSGMYKLYKT-DQMRFILVRNDKWWGIKYYGKPAPKYIVYV 240
D K +F E +GSG YKLYK Q + I +RND WWG +Y+G PAPKYIV +
Sbjct: 173 DPKNVKTMTFLGDEQKYLVGSGPYKLYKVVPQQKAIFIRNDDWWGARYFGLPAPKYIVQL 232
Query: 241 IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQK 300
V SN+ A +M ++GDLD +++ V K IV+W D+ PY P+ ++ NT+
Sbjct: 233 YVQSNDQAANMFLRGDLDVGTYYVDIVELKKKNPNIVSWLDRPPYFPPVVPVIMYFNTKH 292
Query: 301 PPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFT 360
PL+NP+ R+AIA AI P +I + + + P G ++ +KI + +K+YG+
Sbjct: 293 KPLDNPLVRKAIAEAICPAQIVKQGPISDLPDQTPLGNIMK-SWKEKIGVSQLIKEYGWK 351
Query: 361 Y-DPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMV 419
Y DP A ++LD+ G KD +GDG+RE +GK L T +DWM+ ++ QL+++
Sbjct: 352 YCDPQDAAKLLDEAGIKDTDGDGWREY-NGKDLVLTFAACGPCSDWMQAVEIVVNQLKVI 410
Query: 420 GIRVDPKFPDYGKYWDDLTKGNFDMIIN---NFGSQVYATPWQWFNWVFYPDVAPIGKPT 476
GI+VD + D+G G FD+ ++ F S Y+ + N ++Y + G
Sbjct: 411 GIKVDVRKYDWGTMVSKQQAGEFDLTMHWAGTFESDPYSV---YHNLMYYKNETDKG--- 464
Query: 477 YSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEAST 536
N+G Y N + ELL + DE K+++ EL EI+LKD+ +PL ++EA+T
Sbjct: 465 -GANFGNYYNPKANELLDELAKTADEAKQVELLRELTEIWLKDVSAVPLYMGTLFYEANT 523
Query: 537 QYWTNWPTEHNPYALPITWQNYWQMGGLKVLLNIKPAKATTTSSPTTTPTKT-TSSPTST 595
QYW NWP E NP +PI W + G L+++PAKA ++ T T KT T T T
Sbjct: 524 QYWANWPNEKNPTGVPIFWPGFGTWGTALAFLSVRPAKAIGPTTVTQTVEKTQTVEKTQT 583
Query: 596 PTPTQTPSTSSPTATSTSPTETTTKGGICGPALLVGIAVVPILLRKRRK 644
TQT + + T T TKGGICGPAL++ +A +P++ +R++
Sbjct: 584 VEKTQTVEKTQTIEKTVEKTVTQTKGGICGPALIIALAAIPLVAVRRKR 632
>pir||A72429 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4980515|gb|AAD35125.1|AE001690_19 (AE001690)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 606
Score = 343 bits (871), Expect = 3e-93
Identities = 202/577 (35%), Positives = 307/577 (53%), Gaps = 51/577 (8%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFN---PTVSWAA 65
M+K + ++ L + S+ AQ + LPR +T+Y+GG LW +N P +W
Sbjct: 3 MRKSLVLLLALLVLSSLMAQ-------VSLPREDTVYIGGALWGPATTWNLYAPQSTW-- 53
Query: 66 VTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVK 125
GT +Y F YD +D P +AE +++ D T R+ ++ W DG P+TA+D
Sbjct: 54 --GTDQFMYLPAFQYDLGRDAWIPVIAERYEFVDDKTLRIYIRPEARWSDGVPITADDFV 111
Query: 126 FTFDYAKEHKGLSYSPIWGW---LKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAI--IP 180
+ + KE L P GW ++ VK VD + V+F E + +++ Y++ +P
Sbjct: 112 YALELTKE---LGIGPGGGWDTYIEYVKAVDTKVVEFKAKEENLNYFQFLSYSLGAQPMP 168
Query: 181 EHIWKNI-----------DKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYY 229
+H+++ I DKPE + SG YKLY D + R D WWG +
Sbjct: 169 KHVYERIRAQMNIKDWINDKPEE------QVVSGPYKLYYYDPNIVVYQRVDDWWGKDIF 222
Query: 230 GKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIV--TWYDKQPYHL 287
G P PKY+ +VI N A +GD+DW+ FIP V ++ K G+ TWY K+PY +
Sbjct: 223 GLPRPKYLAHVIYKDNPSASLAFERGDIDWNGLFIPSVWELWEKKGLPVGTWYKKEPYFI 282
Query: 288 PINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKK 347
P F+++N KP L++P R+AIAYAI E+ +A A P+ ++ + +K+
Sbjct: 283 PDGVGFVYVNNTKPGLSDPAVRKAIAYAIPYNEMLKKAYFGYGSQAHPSMVIDLFEPYKQ 342
Query: 348 -IYYPEAVKKYG-----FTYDPAKANEILDQLGYKDINGDGYRETPDGKPL-KFTIEVPY 400
I Y A K +G +D AN+ILD+ GYK DG R PDG L +TI VPY
Sbjct: 343 YIDYELAKKTFGTEDGRIPFDLDMANKILDEAGYKK-GPDGVRVGPDGTKLGPYTISVPY 401
Query: 401 GWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQW 460
GWTDWM M +I++ L+ +GI V +FPD+ + D +TKG FD+II+ + P+
Sbjct: 402 GWTDWMMMCEMIAKNLRSIGIDVKTEFPDFSVWADRMTKGTFDLIISWSVGPSFDHPFNI 461
Query: 461 FNWVFYPDVA-PIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKD 519
+ +V ++ P+G+ T++G+W RY N+ V ELL + D + Q Y +Q+I +D
Sbjct: 462 YRFVLDKRLSKPVGEVTWAGDWERYDNDEVVELLDKAVSTLDPEVRKQAYFRIQQIIYRD 521
Query: 520 LPYIPLIYNGAWFEASTQYWTNWPTEHNP-YALPITW 555
+P IP Y W+E ST+YW NWP+E NP + P W
Sbjct: 522 MPSIPAFYTAHWYEYSTKYWINWPSEDNPAWFRPSPW 558
>pir||B71130 probable oligopeptide binding protein APPA - Pyrococcus horikoshii
>gi|3257217|dbj|BAA29900.1| (AP000003) 597aa long
hypothetical oligopeptide binding protein APPA
[Pyrococcus horikoshii]
Length = 597
Score = 211 bits (531), Expect = 2e-53
Identities = 194/670 (28%), Positives = 305/670 (44%), Gaps = 110/670 (16%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGL----WSQPNNFNPTVSWA 64
MKK ++ +L +S A E+++ +GG L W P +FNP
Sbjct: 1 MKKRSLFVITLFLVLVVSQLGIAKASEVKVFPG-VKRIGGTLIVLYWGDPKSFNPDAQVD 59
Query: 65 -AVTGTIGLIYETLFI----YDPLKDKLEPW-LAESGKWISDNTYRVVLKEGLTWQDGKP 118
A G I+ L Y+ + D W +++ GK Y L TW DG P
Sbjct: 60 DAGYGIANQIFCKLVTLDRDYNVIPDLAYKWEISDDGK-----VYTFYLNPNATWHDGVP 114
Query: 119 LTAEDVKFTFDYAKEHKGLSYSPIWGW-LKEVKVVDNRTVDFIFSEPH--YEEWKYWLYN 175
+TAEDVK+TF+ K++KG++Y I +++++VVDN TV F EP + + W Y
Sbjct: 115 VTAEDVKWTFEAIKKYKGIAYGIIHADNIEKIEVVDNYTVRFYLKEPFAPFLSFLAW-YG 173
Query: 176 IAIIPEHIWKN----IDKPESFANTENPIGSGMYKLYKTDQMRFI-LVRNDKWWGIKYYG 230
I+P+HI++ +D + N PIG G +K + + I LV N+ + + G
Sbjct: 174 TFILPKHIYEKYSDWLDPKNPYLN--KPIGCGPFKFVEWVKGDHITLVANENY----FRG 227
Query: 231 KPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIP--GVPDVKAKYGIVTWYDKQPYHLP 288
+P I+Y I+ + AL + G+ D P +P +K+ G+ P
Sbjct: 228 RPGIDKIIYKIIPDASAALQAFLAGEGDVLGQRPPLTEIPRLKSTPGVSVSIRPVP---- 283
Query: 289 INTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKI 348
+ +L N ++P L + R AIAYAIN KE+ +A PA+ T + P K
Sbjct: 284 -SRWYLGFNLKRPYLQDVRVRLAIAYAINRKELVEKAENGLGYPAEGTYV----PAIKWA 338
Query: 349 YYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEM 408
Y P A Y+P KA ++LD+ G+KDINGDG+RETPDGKPL+ + + + +D +
Sbjct: 339 YNPNAKLP---EYNPEKAKQLLDEAGFKDINGDGFRETPDGKPLELRL-LYFTGSDTNAI 394
Query: 409 ARVISEQLQMVGIRVDPKFPDYGKYWDDLTK-GNFDM-IINNFGSQVYATPWQWFNWVFY 466
+I EQL VG++V + + + + K +FD+ +++ F
Sbjct: 395 CTLIKEQLAKVGLKVKLESYEIATWEQKVVKERDFDLALVDGFQG--------------- 439
Query: 467 PDVAPIG---KPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYI 523
PD A + K T N+ Y N +LL D K+ + Y + QEI KDLPY+
Sbjct: 440 PDPANMEIRFKSTAYINFAGYNNTEFDKLLEEAAKTTDTEKRKELYWKAQEILAKDLPYL 499
Query: 524 P---LIYNGAWFEASTQYWTNWPTEH------NPYALPITWQNYWQMGGLKVLLNIKPAK 574
P L+ W S + W E YA+ +W+ G KP +
Sbjct: 500 PLVDLVAISVW--RSEFHGMPWEDEAVGKVGIGSYAMV-----WWEKG--------KPIE 544
Query: 575 ATTTSSPTTTPTKTTSSPTSTPTPTQTPSTSSPTATSTSPTETTTKGGICGPALLVGIAV 634
TT PT T + S+ +PTQT T + G+CGPA ++ + +
Sbjct: 545 ETTNK-----PTSETKTSISSASPTQT---------------ATKEKGVCGPASILSLII 584
Query: 635 VPILLRKRRK 644
+P++ R +R+
Sbjct: 585 IPVVFRLKRR 594
>pir||H82301 peptide ABC transporter, periplasmic peptide-binding protein VC0620
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9655053|gb|AAF93786.1| (AE004147) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 556
Score = 196 bits (494), Expect = 5e-49
Identities = 168/583 (28%), Positives = 280/583 (47%), Gaps = 48/583 (8%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTG 68
+KK A V S+SA + R+E V + NFNP ++ T
Sbjct: 5 IKKTALAAAVIAAATSVSAPAFA--------RSELTIVPDFYPTMVRNFNPYLATNLRT- 55
Query: 69 TIGLIYETLFIYDPLKDKLEPW-LAESGKWISD-NTYRVVLKEGLTWQDGKPLTAEDVKF 126
T IYE L +++ +K + LAES K D + +++G+ W DG+ TA+DV +
Sbjct: 56 TTDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVY 115
Query: 127 TFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKN 186
+F K L I W+ V+ VD V F SE + Y + I I+ EH+WK+
Sbjct: 116 SFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEAN-SNVPYEISLIPIVAEHVWKD 174
Query: 187 IDKPESFANTENPIGSGMYKLYKT-DQMRFILVRNDKWW---GIKYYGKPAPKYIVYVIV 242
+ P +F N ENP+G+G + + T +I RN +W ++ P+ +
Sbjct: 175 VKDPTTFTN-ENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQ------I 227
Query: 243 YSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFL--FLN--- 297
+N+ L +V +LDW++ F VPD+ Y Y AF+ F N
Sbjct: 228 ANNDQLLGKIVNSELDWTSSF---VPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDP 284
Query: 298 TQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPAD-PTGLLIDYPVFKKIYYPEAV-K 355
+K L+N FRRA + A++ + I A D +GL + + EA K
Sbjct: 285 AKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSD----EATHK 340
Query: 356 KY-GF-TYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVIS 413
KY GF TYD + ++L + G+KD+NGDG+ ETP GK + I+ P GWTD+ ++
Sbjct: 341 KYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAV 400
Query: 414 EQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDV-API 472
EQLQ VGI+ + P++ Y + +G +D+ N+ A P+ ++N + + +
Sbjct: 401 EQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHG--ADPFTYWNSGYNSALQSGD 458
Query: 473 GKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAW- 531
G P ++ ++ + ++++ LL D+N+++ H +Q+I ++ IP + +GAW
Sbjct: 459 GMPRFAMHY--FTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIP-VMSGAWM 515
Query: 532 FEASTQYWTNWPTEHNPYALPITWQNYWQMGGLKVLLNIKPAK 574
++ +T +T W +E NP P W + L +L++KP K
Sbjct: 516 YQYNTTRFTGWWSEENPKGRPSVWAGIPER--LLHVLDLKPVK 556
>gb|AAK43144.1| ABC transporter, binding protein [Sulfolobus solfataricus]
Length = 710
Score = 178 bits (446), Expect = 2e-43
Identities = 180/712 (25%), Positives = 298/712 (41%), Gaps = 101/712 (14%)
Query: 11 KLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYV----GGGLWSQPNNFNPTVSWAAV 66
K+++ I+ L ++SI + + + E V G +W +NFNP + A
Sbjct: 5 KIISTIITVLMVISIGIFAMPILSQSTSVQPEGSMVIMPSPGIVWQ--DNFNPWNAPALP 62
Query: 67 TGTIGLIYETLFIYDPLKDKLEPWLAES------------GKWISDNTYRVVLKEGLTWQ 114
G I LIYE L + + L ++ PWLA + G + + L+ + +
Sbjct: 63 GGLIWLIYEPLALVNSLSGQIIPWLATNWTFTTGYVNLPNGTKVQTLALILYLRHDVYFT 122
Query: 115 DGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSE--------PHY 166
DG P A V +T + + L YS + + +++ ++ +F
Sbjct: 123 DGTPFNATAVWYTLALEQAYPQLGYSA--NQIANMTIINPYELEIVFKPGVTPMVLYTIL 180
Query: 167 EEWKY----W--LYNIAIIPEHIWKNIDK---PESFANTENPIGSGMYKLYKTDQMRFIL 217
E+W W ++ + +P + ++K P ++ NT NPIG+G Y LY +L
Sbjct: 181 EQWPVDPAQWGKIFPVEQLPNGTYVGLNKTGNPFTYPNT-NPIGTGPYMLYSFSPQEIVL 239
Query: 218 VRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPD-VKAKYGI 276
V N +W G+P KY++Y SN A + L G + W+ F P + AK +
Sbjct: 240 VANPHYW---MPGEPRIKYLLYPSYPSNVQADTALNNGQITWAGLFEPNIQQQFVAKDPL 296
Query: 277 VTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPT 336
Y Y P L LN K PL++P+ R+AI+ AIN I PA
Sbjct: 297 HYHY----YFAPGFPTMLTLNNLKWPLSDPVLRQAISLAINRTAIYYLGEYGYEPPATTP 352
Query: 337 GLLIDYPVFKKIYYPEAVKKYGFTYDPAKAN-----EILDQLGYKDINGDGYRETPDGKP 391
+ P + Y +V + + P + N ++L+ GYK +NG TP+G
Sbjct: 353 ---LPLPPQQLQYINSSVLQLAEQFAPPQGNVTAALQLLESHGYKLVNGQLI--TPNGTA 407
Query: 392 LK-FTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDM-----I 445
+ TI GWTDW +I++ L+ +GI V+ + P + +++ + GN+ M +
Sbjct: 408 VPAMTIITVAGWTDWDADLTLIAQDLKQIGITVEVQTPPFTTWYNYMETGNYWMGLMWDL 467
Query: 446 INNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLI------NTE 499
I+ + + + W ++ PIG TY N R+ + + N
Sbjct: 468 ISGPTPIQPLSGYLYGYWNSPGNITPIGNSTYY-NIERFNLSIIHPTFEQLVNWANGNFS 526
Query: 500 KDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWTNWPTEHNPY---------- 549
++N ++L +++K +P I L+Y W+E T WPT+ N Y
Sbjct: 527 INDNAYYSIVNKLAALWIKYMPSIALVYGAEWYEYVNNTVTGWPTQQNYYWPAPPWTSLP 586
Query: 550 ---------------ALPITWQNYWQMGGLKVLLNIKP-----AKATTTSSPTTTPTKTT 589
++P W Y + P TTTS+ TTT T TT
Sbjct: 587 STPLPVVLALHLVNQSVPEPWWYYTSQVPSSWYTSNDPFVYQTTTTTTTSTTTTTSTTTT 646
Query: 590 SSPTSTPTPTQTPSTS--SPTATSTSPTETTTKGGICGPALLVGIAVVPILL 639
S+ TST T T +T+ S + ++T+ T TTT L IAVV I++
Sbjct: 647 STTTSTVTTTSVSTTTSVSTSVSTTTATVTTTVTSSSNTTLYAIIAVVVIII 698
>emb|CAC12450.1| (AL445067) dipeptide ABC transport system, periplasmic
dipeptide-binding protein dppA [Thermoplasma
acidophilum]
Length = 609
Score = 175 bits (439), Expect = 1e-42
Identities = 149/567 (26%), Positives = 245/567 (42%), Gaps = 41/567 (7%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNE----------TLYVGGGLWSQ-PNNF 57
+KKLVA I V + L+++ Y + L N TLY+ G +NF
Sbjct: 8 IKKLVAVITVAIAALTVATAVYGPMQQSNLHINSFSATSNDNSSTLYLSPGPTPAFTDNF 67
Query: 58 NPTVS-WAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVV-LKEGLTWQD 115
NP W G +GLIYE L + + PWLA W S+ T + L+ G+ + +
Sbjct: 68 NPFDGVWLTPAGIMGLIYEPLLQINTYNGTVIPWLATGYSWNSNATILTMYLRHGVEFSN 127
Query: 116 GKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYN 175
G P A DV +TF+ K G WG +K + V+ V+F F+ P+ E+ +++ +
Sbjct: 128 GLPFNASDVVYTFNEQKALFGE-----WGVIKNITAVNPYEVNFTFTSPN-TEYLFYIGS 181
Query: 176 IAIIPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPK 235
I+PE ++ N P T NPIG+G Y L + +L N +W G+P K
Sbjct: 182 NIIVPEQLFANSTDPLKEIVT-NPIGTGPYVLQSFSPQKIVLTANPNYW---QKGEPKIK 237
Query: 236 YIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLF 295
+VYV SN+ + G + W++ F P + + + P P+ L
Sbjct: 238 TVVYVEYTSNSALTLAMQSGQVQWASVFAPNITTLFVSKNPQYNHYWFPQGQPVT---LL 294
Query: 296 LNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPE-AV 354
LN PLN FR+AI+ AIN I +PA+ GLL Y ++ A+
Sbjct: 295 LNDMVYPLNMSFFRQAISVAINRTAIMNIGEYGYEQPANAAGLL--YQQLGELNSTNLAL 352
Query: 355 KKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLK-FTIEVPYGWTDWMEMARVIS 413
T++ A +IL G+ + G P+G P+ + G++DW +I+
Sbjct: 353 ANKLATFNLTYAKQILADHGFIINSTTGRLTAPNGTPVPTLNLMSVAGYSDWDTDIALIA 412
Query: 414 EQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIG 473
+L +G+ V+ + P D+T G + M + + + W ++ + P V
Sbjct: 413 NELNQLGLTVNLETPTQNTVSQDVTDGQYQMALY-VDTGIGPNAWYDYSGLVGP-VVKAS 470
Query: 474 KPTYSG--NW---GRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYN 528
P Y W G + L NT + + Y +++ I L+ +P + ++Y+
Sbjct: 471 SPAYVNPERWNATGTGFMQYFHNFTALTNTTQQD----VYINKMASIMLQQMPIVYVVYS 526
Query: 529 GAWFEASTQYWTNWPTEHNPYALPITW 555
W+E WP NP+ +P+ W
Sbjct: 527 ADWYEYVNSTIGGWPNAQNPFWIPMPW 553
>pir||A72393 hypothetical protein TM0300 - Thermotoga maritima (strain MSB8)
>gi|4980800|gb|AAD35388.1|AE001712_1 (AE001712)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein, putative [Thermotoga
maritima]
Length = 611
Score = 136 bits (338), Expect = 1e-30
Identities = 144/609 (23%), Positives = 265/609 (42%), Gaps = 104/609 (17%)
Query: 36 IQLPRNETLYVGGGLWSQPNNFNPTVSWAAV-TGTIGLIYETLFIYDPLKDKLEPWLAES 94
+ +PR +T+ V G + P +FN W G L+ E L++ DP++ ++ LAE+
Sbjct: 22 LNVPREQTVIVPGPKTANPGDFNVIAGWKDPHRGIQQLLLEPLWMDDPVRGEIINALAET 81
Query: 95 GKWISDNTYRVVLK--EGLTWQDGKPLTAEDVKFTFDYAKEHKGLS-YSPIWGWLKEVKV 151
G +++ ++++K +G+ W DG P TA+DV FT + ++ ++ + ++ +V
Sbjct: 82 GPIYNEDFTKMIVKLRKGVYWSDGVPFTADDVVFTVEMCMKYPEMARHMEFNEYIDKVYK 141
Query: 152 VDNRTVDFIFSEPH-------YEEWKYWLYNIAIIPEHIWKNIDKPESFANTENPIGSGM 204
D+ TV F +P+ + W YW +P+H+++ ++ P F P+G+G
Sbjct: 142 EDDYTVVFELKKPNTRFHTYFIDRWGYWWP----MPKHVFEKVEDPVGFTFNP-PVGTGP 196
Query: 205 YKLYKTDQMRFILV--RNDKWWGIK---YYGKPAPKYIVYVIVYSNNLALSMLVKGDLDW 259
Y L D + ++ R + W +G P PKY+++ ++ ++ LD
Sbjct: 197 YVLKDYDPAGYWVLWERREDWQRTPTGMIFGMPKPKYVLFYAYETDEKITLAFLQNQLDA 256
Query: 260 SNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAF--LFLNTQKPPLNNPMFRRAIAYAIN 317
+ + + + V Y P+ ++ + +NT K P N R A+A A++
Sbjct: 257 AGIGPQALKALLKRSKYVKLYSDFPFVPLVDPVVGGITINTAKYPFNMKEVRWALALALD 316
Query: 318 PKEIAARASQNQVKPADPTGLLIDYPVFKKIYYP-------------------------- 351
+++ N + A L P+++K+YY
Sbjct: 317 IVKLSETEEGNMLISALHIPPL---PLYRKLYYEPLEEWLQNLTVNGVKVYDPDVPLKIA 373
Query: 352 EAVKKYGFTY--DPAK----------------ANEILDQLGYK-DINGDGYRETPDGKPL 392
E K+YG+ DP K A ++L +G+K D NG P+G P
Sbjct: 374 EVAKRYGWNVPDDPEKIKLGVGSGWWKHLPDVAEQLLLSVGFKRDKNGKWL--LPNGTPW 431
Query: 393 KFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQ 452
K + G +A +++Q + GI VD Y + +GNF+++I G+
Sbjct: 432 KIQL----GTNPNDLVAFGVAQQWREFGIDVDV----ITTYISGINEGNFEVLIT--GNW 481
Query: 453 VYATPWQ---------WFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELL-RLINTEKDE 502
PW +F Y + P+G+ G+ R+ +ER+ +++ + + ++
Sbjct: 482 PAPEPWGGHADLHRTLYFFHSKYQN-KPLGEGV--GHVSRWFDERLDKIIDEMEKLDWND 538
Query: 503 NKKIQYYHELQEIFLKDLPYIPLIYNGAWFEA---STQYWTNWPTEHNPYALPITWQNYW 559
+ I++ E +I ++LP IP+ G A + YWTNWPT NPY +P YW
Sbjct: 539 PRNIEFGREGLKILAEELPTIPIGTIGVLTTALVYNDYYWTNWPTLENPYMMP-----YW 593
Query: 560 QMGGLKVLL 568
K LL
Sbjct: 594 HWSQFKYLL 602
>pir||G72420 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4980559|gb|AAD35165.1|AE001694_1 (AE001694)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 625
Score = 130 bits (324), Expect = 4e-29
Identities = 172/634 (27%), Positives = 268/634 (42%), Gaps = 100/634 (15%)
Query: 9 MKK-LVAAIVVGLFILSISAQHYVVAGEIQLPRNETLY--VGGGLWSQPNNFNPTVSWA- 64
MKK LV VV +F L + +PRNET V G + P NFN W
Sbjct: 1 MKKFLVVLFVVSMFSL------FFAQLPPNIPRNETFIAQVLTGRAANPTNFNVWTGWVW 54
Query: 65 AVTGTIGLIYETLFIYDPLKDKLEPWLAES-GKWISDNTYRVV-LKEGLTWQDGKPLTAE 122
G L+ E L+ D K+ LAES + SD T + L++G+ W DG+P TA+
Sbjct: 55 QDRGIQNLLLEPLWYVDFATGKIISALAESLPTYNSDFTELTIKLRKGVYWSDGEPFTAD 114
Query: 123 DVKFTFDYAKEHKGLSY-SPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWL---YNIAI 178
DV FT + Y + ++ V+ +D+ TV P+ Y++ I
Sbjct: 115 DVVFTIETIMSTPAFGYHQELVNEVESVEKLDDYTVKIKLKRPNARFHAYFIDRWGGIRP 174
Query: 179 IPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRF--ILVRNDKWWGI---KYYGKPA 233
+P+H+++ ++ P +F P+G+G Y L+ D + + R + W +G P
Sbjct: 175 MPKHVFEKVEDPVNF-EFNPPVGTGPYVLHSVDPGGYWTLWQRREDWERTPTGMLFGMPQ 233
Query: 234 PKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIV-TWYDKQPYHL---PI 289
PKY++++ S + + + LD + I + V + W P+ + P
Sbjct: 234 PKYVLFIDYGSPEKQVLAMAQHQLDEAILTIEALKAVLNRVKTARAWRKNFPWTVNNDPC 293
Query: 290 NTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQV------------------- 330
T F+F NT K P NN R A+ AI+ E AA A V
Sbjct: 294 VTGFVF-NTAKEPFNNIEVRWALTLAIDIVEYAANAFDGAVTLSPIHIPLSTAYYNWYFT 352
Query: 331 -------------------KPADP-TGLLIDYPVFKKIY----YPEAVKK-YG---FTYD 362
KP DP GL + K+ Y PE +K+ +G + Y
Sbjct: 353 RLEDWLKNYEIDLGNGEKFKPYDPEAGLRLAEYAKKRGYSVPDSPEIIKRTFGPGWWKYA 412
Query: 363 PAKANEILDQLG-YKDINGDGYRETPDGKPLKFTIEVPYGWTD-WMEMARVISEQLQMVG 420
P A ++L++ G Y+D NG + P+G + TI P +D A +S+ + G
Sbjct: 413 PDVAAKLLEKNGFYRDKNGKWH--LPNGDLWQITIIAPTNPSDPAYRNAFALSQAWKKFG 470
Query: 421 IRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVF---YP----DVAPIG 473
I + + + +GNFD+ + A PW ++ YP V PIG
Sbjct: 471 IDAVVQTSENANSFG--AEGNFDV----HTAWPAAEPWGGHPDLYRTLYPFHSEYVVPIG 524
Query: 474 KPTYSGNWGRYKNERVAELL-RLINTEKDENKK-IQYYHELQEIFLKDLPYIPLI-YNG- 529
+ GN+ R+ + R+ +++ L NT +K I+ E +I ++ LP +P Y G
Sbjct: 525 EDAPWGNYCRWSDPRLDKIIEELKNTPWGNTQKLIELGTEALKIIVEGLPSVPTFNYPGV 584
Query: 530 -AWFEASTQYWTNWPTEHNPYALPIT-WQNYWQM 561
AW E YWTN+P NPY P W N+ M
Sbjct: 585 IAWDE---YYWTNYPGAENPYTQPYQHWPNFKYM 615
>sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR >gi|2126888|pir||I40545
oligopeptide ABC transporter (oligopeptide-binding
protein) appA - Bacillus subtilis
>gi|677945|gb|AAA62358.1| (U20909) AppA [Bacillus
subtilis] >gi|2633492|emb|CAB12995.1| (Z99110)
oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus subtilis]
Length = 543
Score = 124 bits (309), Expect = 3e-27
Identities = 133/494 (26%), Positives = 221/494 (43%), Gaps = 47/494 (9%)
Query: 49 GLWSQPNNFNPTVSWA-AVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVV 106
G +P FN S A T ++Y L D K ++ LAES K + Y V
Sbjct: 50 GSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDE-KLNVKLSLAESIKELDGGLAYDVK 108
Query: 107 LKEGLTWQDGKPLTAEDVKFTFDY--AKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEP 164
+K+G+ + DGK LTA+DV FT+ +K++KG S + LK V+ + V F
Sbjct: 109 IKKGVKFHDGKELTADDVVFTYSVPLSKDYKGERGST-YEMLKSVEKKGDYEVLFKLKYK 167
Query: 165 HYEEWKYWLYNIAIIPEHIWKNI---DKPESFANTENPIGSGMYKLYKTDQMRFI-LVRN 220
+ L + AI+P+HI N+ D E+ N + PIGSG +K + Q ++I L N
Sbjct: 168 DGNFYNNALDSTAILPKHILGNVPIADLEENEFNRKKPIGSGPFKFKEWKQGQYIKLEAN 227
Query: 221 DKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKA-----KYG 275
D + + G+P + Y ++ N A + L GD+ NFF D K
Sbjct: 228 DDY----FEGRPYLDTVTYKVIPDANAAEAQLQAGDI---NFFNVPATDYKTAEKFNNLK 280
Query: 276 IVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARA--SQNQVKPA 333
IVT L ++ ++ N + + R+A+ A++ + I ++ +V
Sbjct: 281 IVT-------DLALSYVYIGWNEKNELFKDKKVRQALTTALDRESIVSQVLDGDGEVAYI 333
Query: 334 DPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLK 393
+ L +YP K I P+ F Y+ KA ++L + G+KD NGDG + DGK
Sbjct: 334 PESPLSWNYP--KDIDVPK------FEYNEKKAKQMLAEAGWKDTNGDGILD-KDGKKFS 384
Query: 394 FTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQV 453
FT++ G ++A V+ EQL+ +GI V + ++ + + N+D G +
Sbjct: 385 FTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMVMGWSL 444
Query: 454 YATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQ 513
P Q+ D+ + N+ YKN +L++ + D + + Y ++
Sbjct: 445 STFPDQY-------DIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQYSKEYEQIY 497
Query: 514 EIFLKDLPYIPLIY 527
+ +D PY L Y
Sbjct: 498 QKIAEDQPYTFLYY 511
>gb|AAK43153.1| Maltose ABC transporter, maltose binding protein [Sulfolobus
solfataricus]
Length = 721
Score = 124 bits (308), Expect = 3e-27
Identities = 160/649 (24%), Positives = 266/649 (40%), Gaps = 108/649 (16%)
Query: 73 IYETLFIYDPLKDKLEPWLAESGKWISDNT-------------YRVVLKEGLTWQDGKPL 119
I+ETL I D + ++ PWLA + + +NT Y L G Q P
Sbjct: 87 IFETLGIADFMTGQVYPWLATNWTFTDNNTNFIVYLRHGVYFYYNGTLPNGTQGQILWPF 146
Query: 120 TAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKV--VDNRTVDFIFSEPHYEEWKYWLYNIA 177
+A+DV T+ Y ++G V V V+ V F F +P+ + Y L
Sbjct: 147 SAKDVVATYQ--------DYFKVYGNPFNVTVTEVNPYEVIFHFGKPNVQYALYDLLEQF 198
Query: 178 IIPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYI 237
I+P + N+ P + A P+G+G Y L K + + RN +W G+P
Sbjct: 199 IVPWEQYANLTNPAA-AVIPIPVGTGPYYLAKATETQATFYRNPYYW---IPGRPFISTF 254
Query: 238 VYVIVYSNNLALSMLVKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLPIN------ 290
Y + SN A +L KG W G P K + T+ + Q YH +
Sbjct: 255 TYYVGISNAQAYGLLAKGIAQWGGTGSTGSTPFSK----LFTYANPQYYHGMASIGNGSG 310
Query: 291 --TAFLFLNTQKP---PLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVF 345
+FL++N + P N FR A++ A+N +I+ + A PT
Sbjct: 311 GQPSFLWINFARLNYWPWNETWFRYALSLALNRTQISLGSQYGIPTGAPPTPADFLPSPM 370
Query: 346 KKIYYPEAVKKYGF---TYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPY-G 401
++I+ + + Y+ +A +IL+ G K ING P+G PL + Y G
Sbjct: 371 EEIWLNSTIIQEAHQVDQYNLTEAIQILESHGLKIINGK--LSFPNGTPLPTYTMINYQG 428
Query: 402 WTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWF 461
++D ++I+E L +G++++ + + L G +D+I + + Y+ + W
Sbjct: 429 FSDTYATTQLIAEDLAQIGLQINVVSETPSQMFAALDGGQYDLIY--WITNAYSPYYVWE 486
Query: 462 NWVFYPDVAP------------IGKPTYSGNWGRY-KNERVAELLRLINTEKDENKKIQY 508
+ F P + P IG YS ++GR+ + +L + Q
Sbjct: 487 S-AFIPPLIPGTDQPNVTALETIGVYVYS-DFGRWIPPKEFIDLWIQAGDTTNVTLLKQI 544
Query: 509 YHELQEIFLKDLPYIPLIYNG-AWFEASTQYWTNWPTEHNPYALPITWQ-NYWQMGGLKV 566
Y+ + I +KDLP IP++++ +E QY+ + T Y TW W G L +
Sbjct: 545 YNNMAAILIKDLPAIPVVFDAYPRYEYEDQYYIGFSTPQYFY----TWNVEPWIGGNLLM 600
Query: 567 LLNIKP--------------------------AKATTTSSP---------TTTPTKT-TS 590
L+N+ P KA T + P T+T T+T TS
Sbjct: 601 LMNLAPRPPGMSNAQEVAYTQAAWQDLLAFIYGKANTATPPSLLAMLQPSTSTVTQTSTS 660
Query: 591 SPTSTPTPTQTPSTSSPTATSTSPTETTTKGGICGPALLVGIAVVPILL 639
+ T T T T T++ + ++TS T T + ++ GI VV I++
Sbjct: 661 TSTVTTTSASTSVTTTTSMSTTSVTSTVSTSSGLSTGVIAGIIVVIIVI 709
>pir||C70425 transporter (extracellular solute binding protein family 5) -
Aquifex aeolicus >gi|2983834|gb|AAC07389.1| (AE000740)
transporter (extracellular solute binding protein family
5) [Aquifex aeolicus]
Length = 584
Score = 123 bits (307), Expect = 4e-27
Identities = 140/524 (26%), Positives = 227/524 (42%), Gaps = 85/524 (16%)
Query: 50 LWSQPNNFNPTVSW-AAVTGTIGLIYETLFIYDPLKDKLEPWLA------ESGK-WISDN 101
L S P NP ++ + T IG ++ L D K++P LA E GK WI
Sbjct: 59 LSSDPKTLNPALAMETSSTAVIGDLFSGLTKLDLKTMKVKPNLAQGWEVREGGKVWI--- 115
Query: 102 TYRVVLKEGLTWQDGKPLTAEDVKFTFD--YAKEHKGLSYSPIW---GWLKEVKVVDNRT 156
L++ + W DGKP TA+DV FTF+ Y + + I+ G +V+ +D T
Sbjct: 116 ---FYLRKDVKWSDGKPFTADDVVFTFNEVYLNDKIPTTARDIFTIKGKKIKVRKIDEYT 172
Query: 157 VDFIFSEPHYEEWKYWLYNIAIIPEHIWKNIDKPESFA-------NTENPIGSGMYKLYK 209
V+FI EP + I+P+H +N K +F+ N + +G+G YK+ +
Sbjct: 173 VEFILPEPFAPFLNS--LGVEILPKHKLENYVKEGTFSTAWNVNTNPKEIVGTGAYKIEE 230
Query: 210 TDQMRFILVRNDKWWGIKYYGK-------PAPKYIVYVIVYSNNLALSMLVKGDLDWSNF 262
+ + ++ R + + YY K P K V VI+ + AL V G++D+
Sbjct: 231 YVKGQRVVYRANPY----YYEKDENGNRLPYIKEKVGVIIPDPDTALLKFVNGEIDYIGV 286
Query: 263 FIPGV---PDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPM----------FR 309
+ + K K +V P +T FL N Q P P FR
Sbjct: 287 RAQDLLFLANQKDKDFVVYDLGATP-----STTFLVFN-QNPNAKIPKYKIKWFRDRTFR 340
Query: 310 RAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEI 369
AI++AI+ + I +P + P +++ YYP+ F ++ KA E+
Sbjct: 341 IAISHAIDREGIVKLVYNGLAQPLYTPITPANRPYYEESYYPK------FEFNLKKAREL 394
Query: 370 LDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPD 429
L+ +G+KD +GDG E P+G L+FT+ G + M +I E L+ +GI+V + D
Sbjct: 395 LESIGFKDRDGDGILEDPEGHDLEFTLITNAGNKEREMMGAIIKEDLRKIGIKVHFQPID 454
Query: 430 YGKY----------WDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSG 479
+ W+ + G I +FG V+ + W YP + S
Sbjct: 455 FNTLVSKLTSPPYEWEAVIIGLTGSIDPHFGRNVWHSSGSLHMW--YP-----RQKQPST 507
Query: 480 NWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYI 523
W ++V EL+ TE + K++Q Y E+ I ++ P I
Sbjct: 508 EW----EKKVDELIDKGATELNYEKRVQIYREMFRIITEEQPMI 547
>gb|AAC38214.1| (AF042494) unknown protein [Sulfolobus solfataricus]
Length = 722
Score = 119 bits (296), Expect = 9e-26
Identities = 164/652 (25%), Positives = 266/652 (40%), Gaps = 113/652 (17%)
Query: 73 IYETLFIYDPLKDKLEPWLAESGKWISDNT-------------YRVVLKEGLTWQDGKPL 119
I+ETL I D + ++ PWLA + + +NT Y L G Q P
Sbjct: 87 IFETLGIADFMTGQVYPWLATNWTFTDNNTNFIVYLRHGVYFYYNGTLPNGTQGQILWPF 146
Query: 120 TAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKV--VDNRTVDFIFSEPHYEEWKYWLYNIA 177
+A+DV T+ Y ++G V V V+ V F F +P+ + Y L
Sbjct: 147 SAKDVVATYQ--------DYFKVYGNPFNVTVTEVNPYEVIFHFGKPNVQYALYDLLEQF 198
Query: 178 IIPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYI 237
I+P + N+ P + A P+G+G Y L K + + RN +W G+P
Sbjct: 199 IVPWEQYANLTNPAA-AVIPIPVGTGPYYLAKATETQATFYRNPYYW---IPGRPFISTF 254
Query: 238 VYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINT------ 291
Y + SN A +L KG W G + T+ + Q YH +
Sbjct: 255 TYYVGISNAQAYGLLAKGTAQWGGTGSTGSTPFSKLF---TYANPQYYHGMASIGNGSGG 311
Query: 292 --AFLFLNTQKP---PLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFK 346
+FL++N + P N FR A++ A+N +I+ + A PT +
Sbjct: 312 QPSFLWINFARLNYWPWNETWFRYALSLALNRTQISLGSQYGIPTGAPPTPADFLPSPME 371
Query: 347 KIYYPEAVKKYGFT---YDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPY-GW 402
+I+ + + Y+ +A +IL+ G K ING P+G PL + Y G+
Sbjct: 372 EIWLNSTIIQEAHQVDQYNLTEAIQILESHGLKIINGK--LSFPNGTPLPTYTMINYQGF 429
Query: 403 TDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDD-LTKGNFDMIINNFGSQVYATPWQWF 461
+D ++I+E L +G++++ + + L G +D+I + + Y+ + W
Sbjct: 430 SDTYATTQLIAEDLAQIGLQINVVSETPSQMFGPALDGGQYDLIY--WITNAYSPYYVWE 487
Query: 462 NWVFYPDVAP------------IGKPTYSGNWGRYKNERVAELLRL-INTEKDENKKI-- 506
+ F P + P IG YS ++GR+ + E + L I N +
Sbjct: 488 S-AFIPPLIPGTDQPNVTALETIGVYVYS-DFGRWIPPK--EFIDLWIQAGDTTNVTLLK 543
Query: 507 QYYHELQEIFLKDLPYIPLIYNG-AWFEASTQYWTNWPTEHNPYALPITWQ-NYWQMGGL 564
Q Y+ + I +KDLP IP++++ +E QY+ + T Y TW W G L
Sbjct: 544 QIYNNMAAILIKDLPAIPVVFDAYPRYEYEDQYYIGFSTPQYFY----TWNVEPWIGGNL 599
Query: 565 KVLLNIKP--------------------------AKATTTS--------SPTTTPTKTTS 590
+L+N+ P KA T + P+T+ TS
Sbjct: 600 LMLMNLAPRPPGMSNAQEVAYTQAAWQDLLAFIYGKANTATPPSLLAMLQPSTSTVTQTS 659
Query: 591 SPTSTPTPTQTPSTSSPTATS---TSPTETTTKGGICGPALLVGIAVVPILL 639
+ TST T T + STS T TS TS T T + ++ GI VV I++
Sbjct: 660 TSTSTVT-TTSASTSVTTTTSMSTTSVTSTVSTSSGLSTGVIAGIIVVIIVI 710
>dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus halodurans]
Length = 557
Score = 117 bits (291), Expect = 3e-25
Identities = 125/487 (25%), Positives = 208/487 (42%), Gaps = 75/487 (15%)
Query: 73 IYETLFIYDPLKDKLEPWLAESGKWISDNT-YRVVLKEGLTWQDGKPLTAEDVKFTFD-- 129
I+ETL ++ ++ P LA S D Y L+EG+T+ DG P AE VK F+
Sbjct: 85 IFETLIEFERDSFEIGPGLAHSWDMSEDGLRYTFYLEEGVTFHDGTPFNAEAVKVNFERW 144
Query: 130 ------YAKEHKGLSYSPIWGW------------LKEVKVVDNRTVDFIFSEPHYEEWKY 171
YA +G +YS ++G ++E+ VV+ ++F+ SEP
Sbjct: 145 ADPDHPYAFVDEGYNYS-VYGTQFGGFKGDPGHVIEEINVVNEYEIEFVLSEP----LGS 199
Query: 172 WLYNIAIIPEHIWKNIDKPESF-----ANTENPIGSGMYKLYK-TDQMRFILVRNDKWWG 225
+L N+ + + + P +F A ENP+G+G +K T +L +N+++W
Sbjct: 200 FLQNMGM----SYFAMSSPAAFEEYGAAINENPVGTGPFKFVSWTRDDSIVLEKNEEYW- 254
Query: 226 IKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIP-GVPDVKAKYGIVTWYDKQP 284
G P I++ ++ N+ L+ L G +D + P V V+ IV +
Sbjct: 255 --KEGLPKLDKIIFQVIPDNSARLTALRSGQIDIMDGLNPDDVAQVEGDDSIVLF----- 307
Query: 285 YHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPAD---PTGLLID 341
N +L + +K P ++P+ R+AI +AI+ + +PA P G L
Sbjct: 308 ERATNNIGYLGFHVEKEPFDDPLVRQAINHAIDKDSLITALYNGLAEPAKNPVPPGYL-- 365
Query: 342 YPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYG 401
Y EA+ Y YDP +A E+L + GY+ DG+ + + + PY
Sbjct: 366 -------GYNEAIDPY--AYDPERARELLAEAGYE----DGF----EFELWTMPVARPY- 407
Query: 402 WTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWF 461
D A I VGI + D+ Y ++ KG DM + + S V P +
Sbjct: 408 MPDPQRAAEAIQSNFADVGITAKIETRDWATYLEETEKGAHDMFMLGW-SGVNGDPDYFL 466
Query: 462 NWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLP 521
+ + + D P GN Y V E+L D N++ Y E E+ +D
Sbjct: 467 SNLLHGDAIP------GGNRSFYDEGDVNEILNQAKKTVDPNEREVLYFEALEMIHEDAV 520
Query: 522 YIPLIYN 528
+PL+++
Sbjct: 521 MVPLVHS 527
>pir||T44635 dipeptide transporter protein dppA [imported] - Bacillus firmus
(fragment) >gi|1813495|gb|AAB41688.1| (U64514) dipeptide
transporter protein dppA [Bacillus firmus]
Length = 551
Score = 113 bits (281), Expect = 5e-24
Identities = 121/488 (24%), Positives = 211/488 (42%), Gaps = 77/488 (15%)
Query: 73 IYETLFIYDPLKDKLEPWLAESGKWISDNTYRVV--LKEGLTWQDGKPLTAEDVKFTFD- 129
IYETL +D ++ P LA + + D+ R V L+EG+ + DG AE VK F+
Sbjct: 79 IYETLIEFDRDSFEIGPGLAHDWE-VDDSGLRFVFHLEEGVKFHDGTDFNAEAVKVNFER 137
Query: 130 -------YAKEHKGLSYSPIWGW------------LKEVKVVDNRTVDFIFSEPHYEEWK 170
YA +G +YS ++G ++E+ V+ + ++F+ ++P
Sbjct: 138 WADPEHKYAFLDEGYTYS-VYGTQFGGYKGDEGHVIEEINVLGDYEIEFVLNQPLGS--- 193
Query: 171 YWLYNIAIIPEHIWKNIDKPESF-----ANTENPIGSGMYKLYKTDQM-RFILVRNDKWW 224
+L N+ + + I P++F A ENP+G+G +K + IL +N+ +W
Sbjct: 194 -FLQNMGMS----YFAITSPQAFEEHGSAINENPVGTGPFKFVSWSRDDSIILEKNEDYW 248
Query: 225 GIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQ 283
G P +++ ++ N+ L+ L G +D + P V ++ + +
Sbjct: 249 K---EGLPKLDRVIFQVIPDNSARLTALRSGQIDIMDGLNPDDVAQIEGDDSLQVFE--- 302
Query: 284 PYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAA---RASQNQVKPADPTGLLI 340
N +L + K P N+P+ RRA +AI+ + + A K P G L
Sbjct: 303 --RTTNNIGYLGFHVDKEPFNDPVVRRAFNHAIDKEGLIAILYGGLAETAKNTIPPGYL- 359
Query: 341 DYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPY 400
Y +A+ +Y +YDP A E+L + G +D P +P
Sbjct: 360 --------GYNDAIDEY--SYDPELAKELLAEAGIEDGFTFDLWTMPVARPYM------- 402
Query: 401 GWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQW 460
D A I L VGI + ++ Y ++ +G D+ + + S V P +
Sbjct: 403 --PDPQRAAEAIQANLADVGITANIVTKEWATYLEETEQGKHDVFMLGW-SGVNGDPDYF 459
Query: 461 FNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDL 520
F+ + + D P GN Y NE V ELL TE D + + + Y ++QE+ +D
Sbjct: 460 FSNLLHGDAIP------GGNRSFYSNEEVNELLVQAKTEVDFDVRAELYEQVQELIHEDA 513
Query: 521 PYIPLIYN 528
P +PL+++
Sbjct: 514 PMVPLVHS 521
>pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fragment)
>gi|1124957|emb|CAA63625.1| (X93084) orf4
[Methanosarcina barkeri] >gi|1587233|prf||2206350A ORF 4
[Methanosarcina barkeri]
Length = 529
Score = 110 bits (272), Expect = 6e-23
Identities = 113/450 (25%), Positives = 199/450 (44%), Gaps = 44/450 (9%)
Query: 87 LEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWL 146
L+P LA S + + +NT+ L+ +T+ DG +TAEDV FT + S + +
Sbjct: 102 LKPGLATSWEQLDENTWEFKLRNNVTFHDGSKMTAEDVNFTLEKVISENAKVASML--KI 159
Query: 147 KEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNIDKPESF-ANTE--NPIGSG 203
+++VDN T+ +E L + P+ I P S+ N E P+G+G
Sbjct: 160 DSIEIVDNYTLKI-----KTKEINPILPGVLHYPD---TAIISPSSYNENGEFVKPVGTG 211
Query: 204 MYKLYKTDQMRFIL--VRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSN 261
YKL D+ +L V+ND WWG G+ ++ + N + G++D
Sbjct: 212 PYKLESFDEQTRVLTVVKNDNWWG----GEVGLDKMILKGIPDPNTRAMAIENGEVD--- 264
Query: 262 FFIPGVPDVKA-KYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKE 320
F VP + + + + + Y P L LN + PL + R+A++YAI+ +
Sbjct: 265 -FTVDVPYSETDRIDAIDGINVEKYKTP-RVYKLDLNLKHEPLEDVRVRQAMSYAIDRSD 322
Query: 321 IAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDING 380
IA N + A L P ++ +++K Y + D KA+E+L G+ D +G
Sbjct: 323 IAENVLYNVGEAAAGPFL----PTM--VWANKSLKPY--SQDLEKADELLTAAGWVDTDG 374
Query: 381 DGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKG 440
DG R+ DG+PLKF + MA ++ QL+ GI ++ + + G D G
Sbjct: 375 DGIRD-KDGQPLKFNLMTYSARPGLPPMAEAMAAQLREAGIGIETEVLEMGSIDDRRESG 433
Query: 441 NFDMIINNFGSQVYATP-WQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTE 499
++D+ + + + P + NW + N Y N +V L+
Sbjct: 434 DWDLYLAAYNIAMVPDPEYILTNWYM---------TNGTDNNAGYSNPKVDSLITEARKI 484
Query: 500 KDENKKIQYYHELQEIFLKDLPYIPLIYNG 529
+ +++ + ++E++ I + P I + Y G
Sbjct: 485 TNMSERYKKFNEVEAIAYDEQPMIIVAYYG 514
>pir||A72424 hypothetical protein TM0056 - Thermotoga maritima (strain MSB8)
>gi|4980542|gb|AAD35150.1|AE001692_7 (AE001692)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein, putative [Thermotoga
maritima]
Length = 660
Score = 104 bits (256), Expect = 4e-21
Identities = 122/489 (24%), Positives = 201/489 (40%), Gaps = 90/489 (18%)
Query: 48 GGLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVV 106
GG W + P+ W G LI L +D KL P LA+S + + + Y
Sbjct: 86 GGTWRRVWK-GPSDRW----GISKLIEVKLAFWDKEGGKLVPGLAKSWEVLENGRVYIFH 140
Query: 107 LKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYS-PIWGWLK-EVKVVDNRTVDFIFSEP 164
L++G+ W DG P TA D+ F + + ++ S P W + +V+ +D+ TV F FS+P
Sbjct: 141 LRKGVKWSDGAPYTAHDIVFWVNDIVGNDDITPSKPDWYNIGVKVEALDDYTVKFEFSKP 200
Query: 165 HYEEWKYWLYNIAI-------IPEHIWKNI---------------------------DKP 190
Y L+ + + P H K DK
Sbjct: 201 ------YGLFLLKVPYGGFTGAPAHYLKQFHPKYTPMEEIEKKMVEGVHNTWVDLFNDKN 254
Query: 191 ESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYV---IVYSNNL 247
+ NTE P S + + +IL RN +W + G P YI YV V ++ +
Sbjct: 255 DFLENTELPTLSPWKPITDPTEQFYILERNPYFWAVDIEGNQLP-YIDYVRHEYVKNDEV 313
Query: 248 ALSMLVKGDLD--W----------SNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLF 295
L + G++D W NF + Y ++ W I+ +
Sbjct: 314 ILLKAISGEIDMQWRHIGGLGAGAGNFTLLMENSQSGGYRVLKWIAANGSASRISLNYAH 373
Query: 296 LN-TQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAV 354
+ + N+ FR+A++ AIN +EI +P + L+ P F PE
Sbjct: 374 SDEVLRKVFNDVRFRQALSLAINREEINEILFNGLAEPRQAS-LVSGSPYFD----PEWE 428
Query: 355 KKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISE 414
K Y YDP +AN++LD++G K + YR PDG+PL+FTI V + +++ ++ E
Sbjct: 429 KAYA-EYDPDRANKLLDEMGLKWDDKHEYRLLPDGRPLRFTITVTGQF--HVDVWTMVKE 485
Query: 415 QLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNF---------------GSQVYATPWQ 459
+ +G+ V+ + + +++ G+FD ++ N GS+ A W
Sbjct: 486 YWKQIGVWVEIENLERSLFYERADAGDFDAMVWNMDRAAQPLSSPMVIFPGSENIADFWY 545
Query: 460 --WFNWVFY 466
W W+ Y
Sbjct: 546 IGWSGWISY 554
>pir||D72391 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4980810|gb|AAD35397.1|AE001713_1 (AE001713)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 660
Score = 101 bits (250), Expect = 2e-20
Identities = 117/491 (23%), Positives = 202/491 (40%), Gaps = 99/491 (20%)
Query: 48 GGLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVV 106
GG W + P+ W G + +L +D +K P +A+S + + Y
Sbjct: 81 GGTWRRVWK-GPSDRW----GIPRINQASLVFWDKNGEKFVPGVAKSWDILENGKVYVFY 135
Query: 107 LKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYS-PIW-GWLKEVKVVDNRTVDFIFSEP 164
L+EG+ W DG P T+ED+ F D + L+ + P W L V+ D TV F+F +P
Sbjct: 136 LREGMKWSDGHPYTSEDILFWVDDILGNDELTPAKPAWYRLLDRVEAPDPYTVKFVFKQP 195
Query: 165 HYEEWKYWLYNIAII-------PEHIWKNI---------------------------DKP 190
Y L+ + + P+H K DK
Sbjct: 196 ------YALFLLQVANRGFTGSPKHFLKQFHPNYTPMEEIEKKMVEGVHNTWVDLFNDKS 249
Query: 191 ESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKY--IVYVIVYSNNLA 248
+ + + P+ + + + +IL RN +W + G P I + V S+ +
Sbjct: 250 DFLESLDLPVLTPWKPVTDPTEQFYILERNPYFWAVDIEGNQLPYIDRIRHEYVQSSEVI 309
Query: 249 LSMLVKGDLD--WSNFFI----PGVPDVKAK------YGIVTWYDKQPYHLPINTAFLFL 296
+ + G++D W + + PGV + + Y ++ W + + + L
Sbjct: 310 MLKAISGEIDMQWRHIGLLGPGPGVLPLLLENAKSGGYRVLRWKTDNG-----SVSMVML 364
Query: 297 NTQKPP-------LNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIY 349
N PP + FR+A++ AIN +EI +P + + Y
Sbjct: 365 NISDPPDPVLGEVFRDVRFRQALSLAINREEINEILFNGLAEPRQAS-----FVSGSPYY 419
Query: 350 YPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMA 409
PE K Y YDP +AN++LD++G K + YR PDG+PL+FTI+V G T +++
Sbjct: 420 DPEWEKAYA-EYDPDRANKLLDEMGLKWDSRHEYRLLPDGRPLRFTIQVT-GQTH-VDVW 476
Query: 410 RVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDM-----------IINNF----GSQVY 454
++ E + +G+RV+ + + Y L+ +FD +++ GS Y
Sbjct: 477 TMVKEYWKQIGVRVEIENLERSLYDSRLSAHDFDAQAWVMDRASQPLVDPLWIIPGSTEY 536
Query: 455 ATPWQ--WFNW 463
A+ W W +W
Sbjct: 537 ASAWYIGWADW 547
>pir||F71951 periplasmic dipeptide transport substrate-binding protein -
Helicobacter pylori (strain J99)
>gi|4154808|gb|AAD05864.1| (AE001465) PERIPLASMIC
DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 101 bits (248), Expect = 4e-20
Identities = 132/493 (26%), Positives = 211/493 (42%), Gaps = 85/493 (17%)
Query: 71 GLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLT------WQDGKPLTAED 123
G IY+TL + ++EP LA S + D Y L++G+ W +A+D
Sbjct: 72 GNIYDTLVQFKYGTTEVEPALATSWEISPDGLVYTFHLRKGVYFHQTKYWNKKVEFSAKD 131
Query: 124 VKFTFDYAKEHKGLSYSP------IWGWL------KEVKVVDNRTVDFIFSEPHYEEWKY 171
V F+F+ + YSP W + K ++ +D+ T+ F + P
Sbjct: 132 VLFSFERQMDKAKRYYSPGAKSYKYWEGMGMSHIIKSIEALDDYTIRFTLNGPEAP---- 187
Query: 172 WLYNIAI---------IPEHIWKNIDKPESFANTENPIGSGMYK--LYKTDQMRFILVRN 220
+L N+ + +++ +N K E + P+G+G +K L+ D+ + ILV+N
Sbjct: 188 FLANLGMDFLSILSKDYADYLAQNNKKDEL---AKKPVGTGPFKFFLWNKDE-KIILVKN 243
Query: 221 DKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWY 280
+WG K Y K +V I S+ AL++ + + + V ++ IV
Sbjct: 244 QDYWGPKAY---LDKVVVRTIPNSSTRALALRTGEIMLMTGPNLNEVEQLEKLPNIVV-- 298
Query: 281 DKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINP----KEIAARASQNQVKPADPT 336
D+ P + +L LNTQK NNP+ R AI +AIN K I +Q V P PT
Sbjct: 299 DRSP---GLIANWLSLNTQKKYFNNPLVRLAINHAINVDDYIKVIYEGFAQKMVNPFPPT 355
Query: 337 GLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTI 396
+Y + K Y YD KA E+L Q GY + G++ T FT
Sbjct: 356 IWGYNYNI----------KPY--EYDLKKAKELLKQAGYPN----GFKTTI------FTT 393
Query: 397 EV--PYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVY 454
P G A I L +GI V + ++G Y G +M + + +
Sbjct: 394 STRNPKG-------AVFIQASLAKIGIDVKIEVYEWGAYLKRTGLGEHEMAFAGWMADI- 445
Query: 455 ATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQE 514
A P F + + A PT +G++ YK++ ++LL D+ ++ Y + QE
Sbjct: 446 ADPDN-FLYTLWSKQAASAIPTQNGSF--YKSDAFSDLLIKAKRVSDQKEREALYLKAQE 502
Query: 515 IFLKDLPYIPLIY 527
I KD PY+PL Y
Sbjct: 503 IIHKDAPYVPLAY 515
>pir||E72451 probable transport system binding protein APE2257 - Aeropyrum
pernix (strain K1) >gi|5105958|dbj|BAA81269.1|
(AP000064) 515aa long hypothetical transport system
binding protein [Aeropyrum pernix]
Length = 515
Score = 99.8 bits (245), Expect = 8e-20
Identities = 141/549 (25%), Positives = 240/549 (43%), Gaps = 84/549 (15%)
Query: 12 LVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTGTI- 70
++AAI+V IL I+A Y++ Q + G +P S+ T +
Sbjct: 9 ILAAIIV---ILVIAAGFYILFSRQQAANVIVI----GTTDDVTELDPATSYDFFTWEVL 61
Query: 71 GLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRV---VLKEGLTWQDGKPLTAEDVKFT 127
+ L YD + + P+LAE +W S +V L++ + DG P A+ V +
Sbjct: 62 SNVMAGLVTYDQ-QGNIVPYLAE--RWESQEGGKVWIFYLRQDAKFPDGTPCDADVVVRS 118
Query: 128 FDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEH-IWKN 186
+G + +++ V+ +D TV F +P Y+L +A P + + N
Sbjct: 119 IKRVMTIQGDPSWLVTEFVENVEALDQWTVKFTLKQPT----GYFLAVVATPPYYPVHPN 174
Query: 187 I--DKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYS 244
D+P A G G Y + + + +++ ++ + ++G+ V + Y
Sbjct: 175 YPEDQPAPDATWG---GCGPYMIDEFVRDQYLRLKPNP----NFFGEEPKNDGVIIRFYE 227
Query: 245 NNLAL-SMLVKGDLD--WSNFFIPGVPDVKAK-YGIVTWYDKQPYHLPINTAFLFLNTQK 300
+ L S L G++D W + D+++K Y I K+ L I +L L +
Sbjct: 228 GSEDLRSALEAGEIDVAWRTLNPSDLEDLRSKGYNI-----KEVPGLFIR--YLVLRVSQ 280
Query: 301 PPLNNPMFRRAIAYAINPKEIAARASQNQVKPAD---PTGLLIDYPVFKKIYYPEAVKKY 357
PPL+N R+A+A AI+ ++I R + ++P P+G+ YP FK+ KY
Sbjct: 281 PPLDNVAVRQALAAAIDRQDIVDRVFRGTMEPLYSMVPSGMWGHYPAFKE--------KY 332
Query: 358 GFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEV-----PYGWTDWMEMARVI 412
G + A ++L Q GY + N K +E+ YG T+ +A VI
Sbjct: 333 GEGPNIDLARQLLSQAGYSESN-------------KLQVELWYTPEHYGDTE-AALAAVI 378
Query: 413 SEQLQMVG-IRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPD--V 469
EQ + G I V+ K ++G Y D L+ G M+I+ G W+ PD +
Sbjct: 379 KEQWEATGMISVEIKSSEWGTYVDQLSSGQ--MMISLLG---------WYPDYLDPDNFL 427
Query: 470 APIGKPTYSGNWGR-YKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYN 528
P T + G Y N +V +LLR T D N++ Q Y ++QEI ++ P+IPL+
Sbjct: 428 TPFLLSTANSWTGTGYANPQVDDLLRKAMTSSDMNERAQLYKQVQEILAEEAPFIPLVQG 487
Query: 529 GAWFEASTQ 537
+ ST+
Sbjct: 488 KLFVVTSTE 496
>dbj|BAB06745.1| (AP001517) oligopeptide ABC transpoter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 525
Score = 99.8 bits (245), Expect = 8e-20
Identities = 113/478 (23%), Positives = 208/478 (42%), Gaps = 71/478 (14%)
Query: 73 IYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTFDYAK 132
+Y+TL D + ++P LAES + + D + L++G+T+ D P AE VK +
Sbjct: 68 MYDTLVYLDESLE-IQPLLAESLEMVGDTIWEAKLRQGVTFHDDSPFNAEAVKANLERVI 126
Query: 133 EHK-GLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHI-------- 183
+ G + ++ + EV+V+D TV H E Y A +P H+
Sbjct: 127 DPDIGSPVAFLFDMITEVEVIDEYTVHI-----HTE------YPFAPLPSHLAHPGGHMI 175
Query: 184 -----------WKNIDKPESFANTENPIGSGMYKLYKTDQMRFI-LVRNDKWWGIKYYGK 231
N ++P S+ N E+P+G+G Y+ ++ +V+N+ +W +
Sbjct: 176 SKEAIEADYEAMANGEEPFSYIN-EHPVGTGFYRYEGAQNGEYVKVVKNENYWDREQAKS 234
Query: 232 PAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLPIN 290
A + + +V + ++ L G+ D P V ++ +G T K P N
Sbjct: 235 DA---LTFKVVPEDLTRVAELETGEADIIYPVNPNDVNRIEQHHG--TKVLKSP---SSN 286
Query: 291 TAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYY 350
+L NT K P N+P+ R+AIA AI+ + I PA + VF
Sbjct: 287 LTYLGFNTTKEPFNDPLVRQAIAKAIDQEGIINGILNGMALPAKGP---LAPTVFGYDDQ 343
Query: 351 PEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMAR 410
A KK D +A +LD+ GY P+G T V +M++A
Sbjct: 344 FSAAKK-----DVEEAKALLDEAGY-----------PNGFE---TTIVSNDTRAFMDIAV 384
Query: 411 VISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVA 470
+ ++LQ +GI V + + + + G+ +M ++++G+ + + +F+ + A
Sbjct: 385 FVQQELQAIGIDVQVETVETSTFLELAGNGDTEMFVSSWGTVTLDADYGLYP-MFHSENA 443
Query: 471 PIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYN 528
+ GN + NE + +LL E DE +++ Y + Q+I + ++P + L ++
Sbjct: 444 -----GFPGNRTFFANEELDDLLERARKETDEATRLELYKDAQQIIVDEVPLVFLYHS 496
>gb|AAC46281.1| (AF000365) oligopeptide permease homolog AV [Borrelia burgdorferi]
Length = 529
Score = 99.1 bits (243), Expect = 1e-19
Identities = 133/560 (23%), Positives = 238/560 (41%), Gaps = 81/560 (14%)
Query: 19 GLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTGTIG-LIYETL 77
GL IL I+ + + P+++ ++ G G+ ++P + +P + +G LI L
Sbjct: 7 GLLILGIAT--VISCSAMSKPKDDIVF-GVGIGNEPTSLDPQFC----SDRLGNLIINEL 59
Query: 78 FIY----DPLKDKLEPWLAESGKWISDNT-YRVVLKEGLTWQDGKPLTAEDVKFTFDYAK 132
F+ DP P LA++ DNT Y L++ + W DG +TA ++ ++ A
Sbjct: 60 FVGLLRGDPKTGGYRPGLAKNWDISYDNTCYTFHLRDDIYWSDGIKITASTIRDSYIMAL 119
Query: 133 E------HKGLSYSPIWGWLK-----------EVKVVDNRTVDFIFSEPHYEEWKYWLYN 175
E H L S I + VKV++ +T++ S P +
Sbjct: 120 ENELDEPHINLLTSKIKNAQEFYETKLNADEVGVKVINEQTLEITLSRPARYFLDMLTHP 179
Query: 176 IAI-IPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFI-LVRNDKWWGIKYYGKPA 233
I I IP HI K + ++EN + SG +KL + I L +N+K++ K A
Sbjct: 180 IFIPIPTHIVKKFGN--KWTSSENMVTSGPFKLKRRILNEEISLEKNEKFYDAK---NVA 234
Query: 234 PKYIVYVIVYSNNLALSMLVKGDLD--WSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINT 291
+++V + SM ++D ++N + + ++ + Y IN
Sbjct: 235 INELIFVTINDTRRIYSMYEHNEIDAIFNNIPLSLINELILREDF--------YSADINQ 286
Query: 292 -AFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYY 350
F LNT PLNN R A+A A++ + + R N K P Y
Sbjct: 287 IGFFSLNTNVKPLNNVKVREALALAVDRETLTYRVLDNNFKATRKIS-----PNINNYNY 341
Query: 351 PEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDW-MEMA 409
+ +K Y+P KA ++L + GY PDGK T+ + Y D E+A
Sbjct: 342 GKKLK----PYNPRKAEKLLAEAGY-----------PDGKNFP-TLTIKYNKNDLEKEVA 385
Query: 410 RVISEQLQMV-GIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPD 468
I Q + V I V+ + + + ++ KG +++ + ++ Y P +FN +F
Sbjct: 386 SFIQSQWKKVLNIDVEIEPETWVNHISNILKGQYEISVRSWQGD-YLDPMAFFN-IFET- 442
Query: 469 VAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLK-DLPYIPLIY 527
K ++ ++G Y N + EL+ + E+DE +++ +++EI ++ D P IP+
Sbjct: 443 -----KNSHFASYG-YSNPELDELIIKSDLEEDEKLRLEILKKIEEIIIENDYPIIPIYS 496
Query: 528 NGAWFEASTQYWTNWPTEHN 547
+ W W T ++
Sbjct: 497 VAGNYLFKNDKWLGWNTNNS 516
>gi|11496929 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppAV) [Borrelia burgdorferi]
>gi|7442330|pir||B70211 oligopeptide ABC transporter,
periplasmic oligopeptide-binding protein (oppAV) homolog
- Lyme disease spirochete plasmid A/lp54
>gi|2690261|gb|AAC66262.1| (AE000790) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppAV) [Borrelia burgdorferi]
Length = 529
Score = 99.1 bits (243), Expect = 1e-19
Identities = 133/560 (23%), Positives = 238/560 (41%), Gaps = 81/560 (14%)
Query: 19 GLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTGTIG-LIYETL 77
GL IL I+ + + P+++ ++ G G+ ++P + +P + +G LI L
Sbjct: 7 GLLILGIAT--VISCSAMSKPKDDIVF-GVGIGNEPTSLDPQFC----SDRLGNLIINEL 59
Query: 78 FIY----DPLKDKLEPWLAESGKWISDNT-YRVVLKEGLTWQDGKPLTAEDVKFTFDYAK 132
F+ DP P LA++ DNT Y L++ + W DG +TA ++ ++ A
Sbjct: 60 FVGLLRGDPKTGGYRPGLAKNWDISYDNTCYTFHLRDDIYWSDGIKITASTIRDSYIMAL 119
Query: 133 E------HKGLSYSPIWGWLK-----------EVKVVDNRTVDFIFSEPHYEEWKYWLYN 175
E H L S I + VKV++ +T++ S P +
Sbjct: 120 ENELDVPHINLLTSKIKNAQEFYETKLNADEVGVKVINEQTLEITLSRPARYFLDMLTHP 179
Query: 176 IAI-IPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFI-LVRNDKWWGIKYYGKPA 233
I I IP HI K + ++EN + SG +KL + I L +N+K++ K A
Sbjct: 180 IFIPIPTHIVKKFGN--KWTSSENMVTSGPFKLKRRILNEEISLEKNEKFYDAK---NVA 234
Query: 234 PKYIVYVIVYSNNLALSMLVKGDLD--WSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINT 291
+++V + SM ++D ++N + + ++ + Y IN
Sbjct: 235 INELIFVTINDTRRIYSMYEHNEIDAIFNNIPLSLINELILREDF--------YSADINQ 286
Query: 292 -AFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYY 350
F LNT PLNN R A+A A++ + + R N K P Y
Sbjct: 287 IGFFSLNTNVKPLNNVKVREALALAVDRETLTYRVLDNNFKATRKIS-----PNINNYNY 341
Query: 351 PEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDW-MEMA 409
+ +K Y+P KA ++L + GY PDGK T+ + Y D E+A
Sbjct: 342 GKKLK----PYNPRKAEKLLAEAGY-----------PDGKNFP-TLTIKYNKNDLEKEVA 385
Query: 410 RVISEQLQMV-GIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPD 468
I Q + V I V+ + + + ++ KG +++ + ++ Y P +FN +F
Sbjct: 386 SFIQSQWKKVLNIDVEIEPETWVNHISNILKGQYEISVRSWQGD-YLDPMAFFN-IFET- 442
Query: 469 VAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLK-DLPYIPLIY 527
K ++ ++G Y N + EL+ + E+DE +++ +++EI ++ D P IP+
Sbjct: 443 -----KNSHFASYG-YSNPELDELIIKSDLEEDEKLRLEILKKIEEIIIENDYPIIPIYS 496
Query: 528 NGAWFEASTQYWTNWPTEHN 547
+ W W T ++
Sbjct: 497 VAGNYLFKNDKWLGWNTNNS 516
>sp|P75797|YLIB_ECOLI PUTATIVE BINDING PROTEIN YLIB PRECURSOR >gi|7442326|pir||F64820
probable oligopeptide-binding periplasmic protein
precursor - Escherichia coli >gi|1787052|gb|AAC73917.1|
(AE000185) putative transport protein [Escherichia coli
K12]
Length = 512
Score = 97.5 bits (239), Expect = 4e-19
Identities = 124/487 (25%), Positives = 196/487 (39%), Gaps = 62/487 (12%)
Query: 54 PNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLT 112
P + N T+S A Y+ LF D + KL+ LAES D TY V L+EG+
Sbjct: 43 PYDANDTLSQAVAKS----FYQGLFGLDK-EMKLKNVLAESYTVSDDGITYTVKLREGIK 97
Query: 113 WQDGKPLTAEDVKFTFDYAKEHKG-LSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKY 171
+QDG A VK D A + L ++ + + + +D TV +P
Sbjct: 98 FQDGTDFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSA---- 153
Query: 172 WLYNIAIIPEHIWKNIDKPESFANTEN--PIGSGMYKLYKTDQMRFILVRNDKWWGIKYY 229
NI P + E + P+G+G Y+L +Q F+ V+ K+ G
Sbjct: 154 -FINILAHPATAMISPAALEKYGKEIGFYPVGTGPYELDTWNQTDFVKVK--KFAGYWQP 210
Query: 230 GKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPY---- 285
G P I + V NN +ML G+ ++ F IP Y T +K
Sbjct: 211 GLPKLDSITWRPVADNNTRAAMLQTGEAQFA-FPIP--------YEQATLLEKNKNIELM 261
Query: 286 -HLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPV 344
I ++ +N + P +NP R A+ YAIN + A PA TG++
Sbjct: 262 ASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVKVAFAGYATPA--TGVVPPSIA 319
Query: 345 FKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTD 404
+ + Y P + YDP KA E+L + GY P+G T+ + +
Sbjct: 320 YAQSYKP-------WPYDPVKARELLKEAGY-----------PNG--FSTTLWSSHNHST 359
Query: 405 WMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLT-KGNFDMIINNFGSQVYATPWQWF-- 461
++ + +QL VGI+ D G+ ++ KG + G +++ T W
Sbjct: 360 AQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKES-----GVRMFYTGWSASTG 414
Query: 462 --NWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKD 519
+W P A P N Y N++V + L D +K + Y Q+I ++
Sbjct: 415 EADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQE 474
Query: 520 LPYIPLI 526
P+IPL+
Sbjct: 475 SPWIPLV 481
>dbj|BAA35525.1| (D90721) Heme-binding protein a precursor (hemin-binding
lipoprotein). [Escherichia coli]
Length = 598
Score = 97.5 bits (239), Expect = 4e-19
Identities = 124/487 (25%), Positives = 196/487 (39%), Gaps = 62/487 (12%)
Query: 54 PNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLT 112
P + N T+S A Y+ LF D + KL+ LAES D TY V L+EG+
Sbjct: 129 PYDANDTLSQAVAKS----FYQGLFGLDK-EMKLKNVLAESYTVSDDGITYTVKLREGIK 183
Query: 113 WQDGKPLTAEDVKFTFDYAKEHKG-LSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKY 171
+QDG A VK D A + L ++ + + + +D TV +P
Sbjct: 184 FQDGTDFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSA---- 239
Query: 172 WLYNIAIIPEHIWKNIDKPESFANTEN--PIGSGMYKLYKTDQMRFILVRNDKWWGIKYY 229
NI P + E + P+G+G Y+L +Q F+ V+ K+ G
Sbjct: 240 -FINILAHPATAMISPAALEKYGKEIGFYPVGTGPYELDTWNQTDFVKVK--KFAGYWQP 296
Query: 230 GKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPY---- 285
G P I + V NN +ML G+ ++ F IP Y T +K
Sbjct: 297 GLPKLDSITWRPVADNNTRAAMLQTGEAQFA-FPIP--------YEQATLLEKNKNIELM 347
Query: 286 -HLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPV 344
I ++ +N + P +NP R A+ YAIN + A PA TG++
Sbjct: 348 ASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVKVAFAGYATPA--TGVVPPSIA 405
Query: 345 FKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTD 404
+ + Y P + YDP KA E+L + GY P+G T+ + +
Sbjct: 406 YAQSYKP-------WPYDPVKARELLKEAGY-----------PNG--FSTTLWSSHNHST 445
Query: 405 WMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLT-KGNFDMIINNFGSQVYATPWQWF-- 461
++ + +QL VGI+ D G+ ++ KG + G +++ T W
Sbjct: 446 AQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKES-----GVRMFYTGWSASTG 500
Query: 462 --NWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKD 519
+W P A P N Y N++V + L D +K + Y Q+I ++
Sbjct: 501 EADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQE 560
Query: 520 LPYIPLI 526
P+IPL+
Sbjct: 561 SPWIPLV 567
>pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313396|gb|AAD07367.1| (AE000548) dipeptide ABC
transporter, periplasmic dipeptide-binding protein
(dppA) [Helicobacter pylori 26695]
Length = 549
Score = 96.3 bits (236), Expect = 9e-19
Identities = 131/493 (26%), Positives = 210/493 (42%), Gaps = 85/493 (17%)
Query: 71 GLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLT------WQDGKPLTAED 123
G IY+TL + ++EP LA S D Y L++G+ W +A+D
Sbjct: 75 GNIYDTLVQFRYGTTEVEPALATSWDISPDGLVYTFHLRKGVYFHQTKYWNKKVEFSAKD 134
Query: 124 VKFTFDYAKEHKGLSYSP------IWGWL------KEVKVVDNRTVDFIFSEPHYEEWKY 171
V F+F+ + YSP W + K ++ +D+ T+ F + P
Sbjct: 135 VLFSFERQMDKAKRYYSPGAKSYKYWEGMGMSHIIKSIEALDDYTIRFTLNGPEAP---- 190
Query: 172 WLYNIAI---------IPEHIWKNIDKPESFANTENPIGSGMYK--LYKTDQMRFILVRN 220
+L N+ + +++ +N K E + PIG+G +K L+ D+ + IL++N
Sbjct: 191 FLANLGMDFLSILSKDYADYLAQNNKKDEL---AKKPIGTGPFKFFLWNKDE-KIILLKN 246
Query: 221 DKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWY 280
+WG K Y K +V I S+ AL++ + + + V ++ IV
Sbjct: 247 QDYWGPKAY---LDKVVVRTIPNSSTRALALRTGEIMLMTGPNLNEVEQLEKVPNIVV-- 301
Query: 281 DKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINP----KEIAARASQNQVKPADPT 336
DK L ++L LNTQK +NP+ R AI +AIN K + +Q V P PT
Sbjct: 302 DKSAGLL---ASWLSLNTQKKYFDNPLVRLAINHAINADDYIKVLYEGFAQKMVNPFPPT 358
Query: 337 GLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTI 396
+Y + K Y YD KA E+L Q GY + G++ T FT
Sbjct: 359 IWGYNYNI----------KPY--EYDLKKAKELLKQAGYPN----GFKTTI------FTT 396
Query: 397 EV--PYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVY 454
P G A I L +GI V + ++G Y G +M + + + +
Sbjct: 397 ATRNPKG-------AVFIQASLAKIGIDVKIEVYEWGAYLKRTGLGEHEMAFSGWMADI- 448
Query: 455 ATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQE 514
A P F + + + A PT + ++ YKN+ + LL D+ ++ Y + QE
Sbjct: 449 ADPDN-FLYTLWSEQAASAIPTQNHSF--YKNKEFSNLLIKAKRVSDQKEREALYLKAQE 505
Query: 515 IFLKDLPYIPLIY 527
I KD PY+PL Y
Sbjct: 506 IIHKDAPYVPLAY 518
>dbj|BAA94699.1| (AB026907) dipeptide transporter DppA homolog [Ochrobactrum
anthropi]
Length = 508
Score = 92.4 bits (226), Expect = 1e-17
Identities = 115/482 (23%), Positives = 206/482 (41%), Gaps = 59/482 (12%)
Query: 73 IYETLFIYDPLKDKLEPWLAESGKWISDNTYRV--VLKEGLTWQDGKPLTAEDVKFTFDY 130
I E+L D LEP LA+S K ++D+ V VL++G+ + G P+T +DV F+
Sbjct: 57 ICESLISADASGAGLEPGLAQSWK-VADDALSVDLVLRDGIKFSTGTPVTVDDVIFSLQK 115
Query: 131 AKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYE-EWKYWLYNIAIIPEHIWKNIDK 189
A + +G S+ + +K + +D++TV P+ E LY +I+ + ++
Sbjct: 116 AADPQG-SFGFAFEPIKSIDKIDDKTVRLTLKHPYSALESALSLYAASIVSKADYEK--D 172
Query: 190 PESFANTENPIGSGMYKLYKTDQ-MRFILVRNDKWWGIKYYGKPAPKYIVYVIVY--SNN 246
P +F + NP+ +G +K+ ++ + +LV N +W GK P ++ Y +N
Sbjct: 173 PSAFGS--NPVCTGPFKVESYERGTQAVLVPNTYYWRQGEDGKALPYLDEVILKYVPESN 230
Query: 247 LALSMLVKGDLDWSNFFIP--GVPDVKAKYGIVTWYDKQPYHLPINTAF----LFLNTQK 300
+ L GD+D S +P +KA GI L ++ +F +FLN K
Sbjct: 231 SRILGLQNGDVDVS-LAVPLNQAEAIKAIDGI---------SLEVSPSFRLDYVFLNHAK 280
Query: 301 PPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFT 360
PL++ FR A+ YA N + I G + + + K Y+ + V + F
Sbjct: 281 KPLDDKNFRLALNYAANREAILKAVYFGY-------GEIPNSYMPKVTYWSDKVARIPF- 332
Query: 361 YDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVG 420
D K+ ++ GY DG P++ ++ G T + +A ++ + + G
Sbjct: 333 -DIEKSKQLAKDSGY------------DGAPIQIMVDT--GNTSFRTIAAILQQGWKQAG 377
Query: 421 IRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGN 480
I + D G + KG++ ++ S + + G +
Sbjct: 378 IESEIVEYDVGTAFSMSEKGDYQAYVSYITSDISDDD-------ELASIQADGTGPTAAF 430
Query: 481 WGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWT 540
+ YKN+ V LL D+ K+ + Y ++QE D IP+ + + A Y
Sbjct: 431 FSNYKNDEVTRLLAEARQTADKAKRAELYAKVQETVYHDGYSIPINFR-PYVNAHHDYVK 489
Query: 541 NW 542
NW
Sbjct: 490 NW 491
>dbj|BAB03750.1| (AP001507) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 538
Score = 91.7 bits (224), Expect = 2e-17
Identities = 116/470 (24%), Positives = 201/470 (42%), Gaps = 61/470 (12%)
Query: 73 IYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTFDYAK 132
IYETL + D + L P LA I D T+ L+EG+ + D AE VK +
Sbjct: 81 IYETLVVTDQDME-LHPGLATEWNPIDDTTWEFKLREGVKFHDDTDFNAEVVKANLERIL 139
Query: 133 EHKGLSYSP-IWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYN-------IAIIPEHIW 184
+ + S ++ + +++VVD+ TV P + +N AI ++
Sbjct: 140 DPEVASPRAFLYDMITDIEVVDDYTVHITTEFPFAPLPAHLAHNGGGMVSLEAIEADYAA 199
Query: 185 KNIDK-PESFANTENPIGSGMYKLYKTDQMRFI-LVRNDKWWGIKYYGKPAPKYIVYVIV 242
K P S+ N ENP G+G +K +++ LVRND +W G + + +V
Sbjct: 200 MEEGKDPGSYIN-ENPTGTGYFKFDDRVPDQYVRLVRNDDYWD----GTALLDSVTFKVV 254
Query: 243 YSNNLALSMLVKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKP 301
+ ++ L GD SN P V V+A G+ ++ +++ N K
Sbjct: 255 GEDLTRIAELETGDSHISNPLSPSDVSRVEATEGMHVHRQDS-----MSLSYIGFNLDKE 309
Query: 302 PLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTY 361
P ++ R+AI+ AI+ +I PA I + Y + V G +
Sbjct: 310 PFDDVRVRQAISMAIDKSQIIDGIYDGVGVPA------IGPLAPGTVGYDDTVS--GLDH 361
Query: 362 DPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT----DWMEMARVISEQLQ 417
D KA E+L + GY+D G+ T WT + ++ A + QL+
Sbjct: 362 DIEKAKELLAEAGYED----GFSTTL--------------WTNDNRERVDAATNVQAQLK 403
Query: 418 MVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTY 477
+GI V+ + ++G Y ++ G DM + + + + + +F+ + +G+P
Sbjct: 404 EIGIDVEIEVLEWGTYLENTANGEHDMFVLGWSTVTGDADYGLYA-LFHS--SQVGEP-- 458
Query: 478 SGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
GN K++ + ELL E DE ++ YH++QE K + P++Y
Sbjct: 459 -GNRTFLKDDELDELLDKARRETDEETRLALYHDVQE---KLVELAPMLY 504
>dbj|BAB04066.1| (AP001508) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 516
Score = 90.5 bits (221), Expect = 5e-17
Identities = 110/479 (22%), Positives = 196/479 (39%), Gaps = 84/479 (17%)
Query: 73 IYETLFIYDPLKDK---LEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTFD 129
+++ +F Y +D+ ++P L E+ + I D T + LKEG+T+ +G PLT+EDVKFT +
Sbjct: 65 VHDNMFNYLFKRDENNVIQPELVETFESIDDRTVEMTLKEGVTFHNGDPLTSEDVKFTLE 124
Query: 130 YAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEW-KYWLYNIAIIPEHIWKNID 188
L P + +KEV++ D T I EP + + I+P K
Sbjct: 125 RVATDDTLQEYPNYKQIKEVEIKDELTFRVITHEPEPSLFHRLSRLGSGILP----KTYI 180
Query: 189 KPESFAN-TENPIGSGMY---------KLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIV 238
+ E + + NP+G+G Y K+ T + D+W +V
Sbjct: 181 EEEGWDHFLANPVGTGPYQFKEWVRDSKIVLTPYENYFEGAVDEW-----------DEVV 229
Query: 239 YVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLN- 297
+ ++ N+ ++ L+ G D + IP + + T + + T L L
Sbjct: 230 FRVIPENSTRVAELLTGGADIA-VNIPSADWERVEENEGTSMKTETSN---RTIMLILRA 285
Query: 298 TQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKY 357
T+ P + R+A+ AI+ K I + P ++ + +Y
Sbjct: 286 TEGYPTADVRVRQALDLAIDNKAITENVLRGGGIPTKTRVAPGNFGAEESLYNT------ 339
Query: 358 GFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYG-WTDWMEMARVISEQL 416
+ YD KA ++L + GY PDG + T+ P+G + E+A +I+ L
Sbjct: 340 -YDYDVEKAKQLLKEAGY-----------PDG--FEMTLHSPHGRYLQDAEVAEMIAGML 385
Query: 417 QMVGIRVDPKFPDYGKYWDDLTKG-NFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKP 475
Q + + V +F ++ + + G N D + G+ ++
Sbjct: 386 QAINVEVRLEFMEWSNFVEMRQAGENKDAYLIGLGNSMF-------------------DG 426
Query: 476 TYSGNWGR---------YKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPL 525
YS +W R YKNE + LL DE ++ + E+Q I +++P+I L
Sbjct: 427 AYSVDWHRSDRFVGETDYKNEEIDALLEASAVNMDEEERAKQIQEIQRIAAEEVPHIML 485
>dbj|BAB07355.1| (AP001519) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 610
Score = 90.5 bits (221), Expect = 5e-17
Identities = 108/474 (22%), Positives = 195/474 (40%), Gaps = 87/474 (18%)
Query: 102 TYRVVLKEGLTWQDGKPLTAEDVKFTFDYA--KEHKGLSYSPIW--------------GW 145
T+ +++ + W DG+P+TAED F + + G+ +
Sbjct: 138 TFTFTIRDNVNWHDGEPVTAEDWAFAHEVIGHPNYDGIRFDDTLRNVEGIEEYHNGEADH 197
Query: 146 LKEVKVVDNRTVDFIFSE--PHYEEWKYWLYNIAIIPEHIWKNIDKPESFANTE---NPI 200
+ ++VVD +T+ + + P W Y +A +HI+ ++D + ++ E NPI
Sbjct: 198 ISGIEVVDEKTLKITYKKATPSLMTGGVWYYPLA---KHIFGDMDIEDISSSPEVRQNPI 254
Query: 201 GSGMYKLYKTDQMRFILV-RNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDW 259
G G +K+ ++ +N+ +W G+P +V +V S N+ + L G++D
Sbjct: 255 GFGPFKVENVVPGESVVYSKNEDYWR----GEPNLDEVVLKVV-SPNVVMQSLRSGEVDL 309
Query: 260 ---------------SNFFIPGVPDVKAKY---GIVTWYDKQPYHLPINTAFLFLNTQKP 301
SN GV D Y + TW D + P + +
Sbjct: 310 VHSFPADQFPDNADTSNLDWLGVVDRAYTYIGFKLGTWEDGEVKTDP--------DAKMA 361
Query: 302 PLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTY 361
+N RRA+ +AI+ + R ++ A T + +P F P G Y
Sbjct: 362 DVN---LRRAMWHAIDNDAVGERFYHG-LRWAGTTLIPPSHPEFHDDTNP------GRAY 411
Query: 362 DPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGI 421
DP A ++LD+ GY+D++GDG+RE +G L G +A+ + + VG+
Sbjct: 412 DPELAKQLLDEAGYEDVDGDGFREDLEGNELVINFASMSGGDIAEPLAQYYIQAWEQVGL 471
Query: 422 RV---DPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIG----- 473
+V D + ++ ++D + + + D+ I W DV P G
Sbjct: 472 KVQLLDGRLHEFNAFYDRVEEDDPDIDIYQGA------------WGVGIDVDPSGLYGRR 519
Query: 474 KPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
P W +N+R+ E L D K+ + Y E Q++ + ++P IP +Y
Sbjct: 520 APFNYTRWSSEENDRLLE-EALSEEAFDVEKRQEIYKEWQQLMVDEVPVIPTLY 572
>dbj|BAB06473.1| (AP001516) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 534
Score = 90.5 bits (221), Expect = 5e-17
Identities = 107/500 (21%), Positives = 209/500 (41%), Gaps = 68/500 (13%)
Query: 49 GLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLK 108
G+ + P + +P + V+ +I +Y ++ P LAES I + T+ ++
Sbjct: 50 GVMNDPVSLDPHGANENVSNSINSNMYDRLVYLDKNLEIAPGLAESLVQIGETTWEASIR 109
Query: 109 EGLTWQDGKPLTAEDVKFTFDYAKEHK-GLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYE 167
+ + + DG L AE VK FD ++ + G + ++ + EVKV+D+ TV F P
Sbjct: 110 KDVQFHDGSQLNAEVVKANFDRIRDPEIGSPVAFLFNMITEVKVIDDYTVHFETEFP--- 166
Query: 168 EWKYWLYNIAIIPEHI----------------WKNIDKPE-SFANT-ENPIGSGMYKLY- 208
A +P H+ ++ ++K E +F T E PIG+G +K
Sbjct: 167 --------FAPLPSHLAHPGGSIISMGSIEASYEALEKGEDAFTPTNERPIGTGYFKFED 218
Query: 209 KTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVP 268
+T L R++ +WG + + + ++ + ++ L G + + P
Sbjct: 219 RTPGQSVTLSRHENYWGDELAKVDT---VTFQVIPEDLTRIAELETGGIHLTYPVNPSDA 275
Query: 269 DVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQN 328
+ + + G T+ ++ +L NT+ P ++P R+AI AI+ I
Sbjct: 276 E-RIENGPDTYLEQAN---STRMVYLGFNTEVEPFDDPKVRQAIHMAIDKDGILDGVVSG 331
Query: 329 QVKPADPTGLLIDYPVFKKIY-YPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETP 387
G+ D P+ ++ + E + K T+D A ++L + GY P
Sbjct: 332 -------IGIRADGPIAPDVFGFSEQIDK--ITFDREMAKDLLAEAGY-----------P 371
Query: 388 DGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIIN 447
DG P + + ++A +I QL +GI V ++G Y + G ++ +
Sbjct: 372 DGFPTTLLTDDD---RERQDLAEMIQYQLSEIGIDVSIDMFEFGTYLERAGNGESELFLG 428
Query: 448 NFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQ 507
++G+ ++ YP K + +GN +++ + +LL DE ++++
Sbjct: 429 SWGTVTMDG-----DYGLYPVFHSSNKGS-AGNRSFIEHDELDQLLDNARQATDEEERLE 482
Query: 508 YYHELQEIFLKDLPYIPLIY 527
Y + Q + + PY L Y
Sbjct: 483 LYRKAQNVLAEQSPYAYLYY 502
>pir||B71212 hypothetical protein PH1962 - Pyrococcus horikoshii
>gi|3258406|dbj|BAA31089.1| (AP000007) 841aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 841
Score = 89.7 bits (219), Expect = 9e-17
Identities = 42/69 (60%), Positives = 56/69 (80%), Gaps = 1/69 (1%)
Query: 576 TTTSSPTTTPTKT-TSSPTSTPTPTQTPSTSSPTATSTSPTETTTKGGICGPALLVGIAV 634
TTTSSP+ T T+T T + TS+P+PTQT S S T T+TSP++T T GGICGPAL+VG+A
Sbjct: 773 TTTSSPSPTKTETQTQTTTSSPSPTQTTSPSQTTTTTTSPSQTKTGGGICGPALIVGLAA 832
Query: 635 VPILLRKRR 643
+P++LR+RR
Sbjct: 833 IPLILRRRR 841
>sp|Q47622|SAPA_ECOLI PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA PRECURSOR
>gi|7442324|pir||A64878 peptide transport periplasmic
protein sapA precursor - Escherichia coli
>gi|1279400|emb|CAA65937.1| (X97282) SapA protein
[Escherichia coli] >gi|1787551|gb|AAC74376.1| (AE000227)
homolog of Salmonella peptide transport periplasmic
protein [Escherichia coli K12]
Length = 547
Score = 88.5 bits (216), Expect = 2e-16
Identities = 127/506 (25%), Positives = 208/506 (41%), Gaps = 74/506 (14%)
Query: 53 QPNNFNPT-VSWAAVTGTIGL-IYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKE 109
Q N FNP+ S + T+ Y+ L DP +L P LAES + + + TYR L+
Sbjct: 43 QVNTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR 102
Query: 110 GLTWQDG------KPLTAEDVKFTFDYAKEHKGLSYS------PIWGWL------KEVKV 151
+ +Q + + A+DV FTF + ++ P + L K V+
Sbjct: 103 DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRK 162
Query: 152 VDNRTVDFIFSEPHYE-EWKYWLYNIAIIPEHIWKNIDKPESFANTE-NPIGSGMYKLYK 209
+DN TV+F ++P W + +++ + ++K + + P+G+G Y+L +
Sbjct: 163 LDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSE 222
Query: 210 TDQMRFI-LVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVP 268
+FI L R+D +W GKP +V + LS L+ G+ D V
Sbjct: 223 YRAGQFIRLQRHDDFW----RGKPLMPQVVVDLGSGGTGRLSKLLTGECD--------VL 270
Query: 269 DVKAKYGIVTWYDKQPYHLPI----NTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAAR 324
A + D L + N A+L NT KPPLNNP R A+A AIN + +
Sbjct: 271 AWPAASQLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQS 330
Query: 325 ASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYR 384
+ A P Y EA Y+PAK+ E L LG ++
Sbjct: 331 IYYGTAETAASI-----LPRASWAYDNEAKIT---EYNPAKSREQLKSLGLEN------- 375
Query: 385 ETPDGKPLKFTIEVPYGWTDW----MEMARVISEQLQMVGIRVDPKFPDYGKYWD-DLTK 439
L + VP W ++ A +I + VG++V P G++ + L
Sbjct: 376 -------LTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKV-VIVPVEGRFQEARLMD 427
Query: 440 GNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTE 499
+ D+ ++ + + P +F + A I T +W K + V LR +
Sbjct: 428 MSHDLTLSGWATD-SNDPDSFFRPLL--SCAAIHSQTNLAHWCDPKFDSV---LRKALSS 481
Query: 500 KDENKKIQYYHELQEIFLKDLPYIPL 525
+ +I+ Y E Q I ++LP +PL
Sbjct: 482 QQLAARIEAYDEAQSILAQELPILPL 507
>dbj|BAA14855.1| (D90767) Peptide transport periplasmic protein SapA precursor.
[Escherichia coli] >gi|1742125|dbj|BAA14864.1| (D90768)
Peptide transport periplasmic protein SapA precursor.
[Escherichia coli]
Length = 547
Score = 88.5 bits (216), Expect = 2e-16
Identities = 127/506 (25%), Positives = 208/506 (41%), Gaps = 74/506 (14%)
Query: 53 QPNNFNPT-VSWAAVTGTIGL-IYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKE 109
Q N FNP+ S + T+ Y+ L DP +L P LAES + + + TYR L+
Sbjct: 43 QVNTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR 102
Query: 110 GLTWQDG------KPLTAEDVKFTFDYAKEHKGLSYS------PIWGWL------KEVKV 151
+ +Q + + A+DV FTF + ++ P + L K V+
Sbjct: 103 DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSVRK 162
Query: 152 VDNRTVDFIFSEPHYE-EWKYWLYNIAIIPEHIWKNIDKPESFANTE-NPIGSGMYKLYK 209
+DN TV+F ++P W + +++ + ++K + + P+G+G Y+L +
Sbjct: 163 LDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPYQLSE 222
Query: 210 TDQMRFI-LVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVP 268
+FI L R+D +W GKP +V + LS L+ G+ D V
Sbjct: 223 YRAGQFIRLQRHDDFW----RGKPLMPQVVVDLGSGGTGRLSKLLTGECD--------VL 270
Query: 269 DVKAKYGIVTWYDKQPYHLPI----NTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAAR 324
A + D L + N A+L NT KPPLNNP R A+A AIN + +
Sbjct: 271 AWPAASQLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQS 330
Query: 325 ASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYR 384
+ A P Y EA Y+PAK+ E L LG ++
Sbjct: 331 IYYGTAETAASI-----LPRASWAYDNEAKIT---EYNPAKSREQLKSLGLEN------- 375
Query: 385 ETPDGKPLKFTIEVPYGWTDW----MEMARVISEQLQMVGIRVDPKFPDYGKYWD-DLTK 439
L + VP W ++ A +I + VG++V P G++ + L
Sbjct: 376 -------LTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKV-VIVPVEGRFQEARLMD 427
Query: 440 GNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTE 499
+ D+ ++ + + P +F + A I T +W K + V LR +
Sbjct: 428 MSHDLTLSGWATD-SNDPDSFFRPLL--SCAAIHSQTNLAHWCDPKFDSV---LRKALSS 481
Query: 500 KDENKKIQYYHELQEIFLKDLPYIPL 525
+ +I+ Y E Q I ++LP +PL
Sbjct: 482 QQLAARIEAYDEAQSILAQELPILPL 507
>sp|P36634|SAPA_SALTY PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA PRECURSOR
>gi|628817|pir||S39585 peptide transport periplasmic
protein sapA precursor - Salmonella typhimurium
>gi|414208|emb|CAA52284.1| (X74212) sapA [Salmonella
typhimurium]
Length = 549
Score = 88.5 bits (216), Expect = 2e-16
Identities = 130/507 (25%), Positives = 209/507 (40%), Gaps = 76/507 (14%)
Query: 53 QPNNFNPT-VSWAAVTGTIGL-IYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKE 109
Q N FNP S + T+ +Y+ L DP +L P LAES + + + TYR L+
Sbjct: 45 QVNTFNPQKASSGLIVDTLAAQLYDRLLDVDPYTYRLVPELAESWEVLDNGATYRFHLRR 104
Query: 110 GLTWQDG------KPLTAEDVKFTFD--YAKEH-----KGLSYSPIWGWL------KEVK 150
+++Q + L A+DV FTF + + H G S+ P + L K V+
Sbjct: 105 DVSFQKTAWFTPTRKLNADDVVFTFQRIFDRRHPWHNINGSSF-PYFDSLQFADNVKSVR 163
Query: 151 VVDNRTVDFIFSEPHYEE-WKYWLYNIAIIP-EHIWKNIDKPESFANTENPIGSGMYKLY 208
VDN TV+F ++P W + +++ E+ + K P+G+G ++L
Sbjct: 164 NVDNNTVEFRLTQPDASFLWHLATHYASVMSAEYAAQLSRKDRQELLDRQPVGTGPFQLS 223
Query: 209 KTDQMRFI-LVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGV 267
+ +FI L R+D +W GKP +V + LS L+ G+ D V
Sbjct: 224 EYRAGQFIRLQRHDGFWR----GKPLMPQVVVDLGSGGTGRLSKLLTGECD--------V 271
Query: 268 PDVKAKYGIVTWYDKQPYHLPI----NTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAA 323
A + D L + N A+L NT KPPLNNP R A+A +IN + +
Sbjct: 272 LAWPAASQLTILRDDPRLRLTLRPGMNIAYLAFNTDKPPLNNPAVRHALALSINNQRLMQ 331
Query: 324 RASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGY 383
+ A P Y +A Y+P K+ E L LG ++
Sbjct: 332 SIYYGTAETAASI-----LPRASWAYDNDAKIT---EYNPQKSREQLKALGIEN------ 377
Query: 384 RETPDGKPLKFTIEVPYGWTDW----MEMARVISEQLQMVGIRVDPKFPDYGKYWD-DLT 438
L + VP W ++ A +I + VG++V P G++ + L
Sbjct: 378 --------LTLHLWVPTSSQAWNPSPLKTAELIQADMAQVGVKV-VIVPVEGRFQEARLM 428
Query: 439 KGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINT 498
N D+ ++ + + P +F + A I T N+ + N +LR +
Sbjct: 429 DMNHDLTLSGWATD-SNDPDSFFRPLL--SCAAINSQT---NFAHWCNPEFDSVLRKALS 482
Query: 499 EKDENKKIQYYHELQEIFLKDLPYIPL 525
+ +I+ Y E Q I K+LP +PL
Sbjct: 483 SQQLASRIEAYEEAQNILEKELPILPL 509
>pir||F82442 probable peptide ABC transporter, periplasmic peptide-binding
protein VCA0591 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9658002|gb|AAF96493.1| (AE004389)
peptide ABC transporter, periplasmic peptide-binding
protein, putative [Vibrio cholerae]
Length = 611
Score = 87.8 bits (214), Expect = 4e-16
Identities = 98/441 (22%), Positives = 177/441 (39%), Gaps = 47/441 (10%)
Query: 55 NNFNPTVSWAAVTGTIGLIYETLFIYDPLK--DKLEPWLAESGKWISDNTY-RVVLKEGL 111
+NFN S +Y+ L ++ P D P +A ++ D T+ + L
Sbjct: 73 DNFNRFASRGVAAANTAELYDPL-MFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNA 131
Query: 112 TWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKY 171
+ DGKP+TA+DV+F+F+ Y + +K VK + RTV +P+ E+
Sbjct: 132 RFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFS 191
Query: 172 WLYNIAIIPEHIW--KNIDKPESFANTENPIGSGMYKLYKTDQMRFILVR-NDKWWGIKY 228
+ ++P+H W KN+ +P + E P+GSG Y++ + + + N +W
Sbjct: 192 LAQSTRVLPKHYWQYKNLAEPLN----EPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDL 247
Query: 229 ---YGKPAPKYIVYVIVYSNNLALSMLVKGDLDW-----SNFFIPGVPDVKAKYGIVTWY 280
G+ I Y + + L G+ D + F+ G++
Sbjct: 248 PVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIK-K 306
Query: 281 DKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPK--------------------- 319
++ + P +T NTQ+P + R A+ YA++ +
Sbjct: 307 EEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNT 366
Query: 320 EIAARASQNQVKPADPTGLLIDYP--VFKKIYYPEAVKKYG-FTYDPAKANEILDQLGYK 376
E A+ N + A T P VF + Y P G +A +L + G+
Sbjct: 367 EYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGW- 425
Query: 377 DINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDD 436
++ G+PL F + + T+ +A + + LQ++GI + + D +Y
Sbjct: 426 ELKNKVMTNVKTGEPLSFELLIYSPTTE--RIAIPLQKNLQLMGIEMKIRTVDTTQYTKR 483
Query: 437 LTKGNFDMIINNFGSQVYATP 457
L +FDMI + F + Y +P
Sbjct: 484 LRDRDFDMISHGFSANPYPSP 504
>sp|P55691|Y4WM_RHISN HYPOTHETICAL PROTEIN Y4WM PRECURSOR >gi|2182703|gb|AAB91920.1|
(AE000104) Y4wM [Rhizobium sp. NGR234]
Length = 663
Score = 87.8 bits (214), Expect = 4e-16
Identities = 123/534 (23%), Positives = 210/534 (39%), Gaps = 69/534 (12%)
Query: 55 NNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEP---WLAESGKW---ISDNTYRVVLK 108
+ FNP + + +++TL P +D++ LAE + IS T+R L+
Sbjct: 76 DTFNPLLVKGETAVGLDFVFDTLM--KPSEDEISTAYGLLAEGVSFPDDISSATFR--LR 131
Query: 109 EGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEE 168
+ W DGKP+T EDV F+FD AKE L Y + + + + +R V F F + + E
Sbjct: 132 QEAKWADGKPVTPEDVVFSFDKAKELNPL-YQSYYRHVVKAEKTGDRDVTFHFDDKNNHE 190
Query: 169 WKYWLYNIAIIPEHIWKNI---DKPESFANT--ENPIGSGMYKLYKTDQMRFI-LVRNDK 222
+ L I I+P+H W+ KP + T E +GSG Y++ I R
Sbjct: 191 LPHILGQIRIVPKHWWEGTGPDGKPRDISRTTLEPVMGSGPYRIASFAPGGTIRYERRPD 250
Query: 223 WWGIKY---YGKPAPKYIVYVIVYSNNLALSMLVKGDLD---------WSNFF-IPGVPD 269
+WG+ G+ I Y ++ G+ D W+ F P V D
Sbjct: 251 YWGVALNVNVGQNNFDSITYSFFGDRDVEFEAFRSGNTDYWRENQAMRWATAFDFPAVKD 310
Query: 270 VKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQ 329
+ K + P+ + N ++ P ++ R+A+ YA++ +E+ NQ
Sbjct: 311 GRVKREEI----PNPFRATAVMQAMVPNMRRKPFDDERVRQALNYALDFEELNRTIFYNQ 366
Query: 330 VKPAD---------PTGL-----LIDYPVFKKIYYPEAV-----KKYGFTYDPAKAN--- 367
+ + +GL L + K + PE G T A+ N
Sbjct: 367 YQRVNSFFFATELASSGLPEGKELKNLNEVKDLVPPEVFTTPYSNPVGGTPQKARENLRK 426
Query: 368 --EILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDP 425
E+L++ G+ ++NG+ T GKP F+ E+ + +A ++ L+ +GI
Sbjct: 427 AIELLNKAGF-ELNGNRMVNTETGKP--FSFEIMLSSPSFERVALPYAQNLKRIGIEARV 483
Query: 426 KFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYK 485
+ D +Y + ++D+ +G + Q W + S N+
Sbjct: 484 RTVDPSQYTNRKRAFDYDVTWEVWGQSLSPGNEQADYW-----GSAAATRQGSRNYAGIS 538
Query: 486 NERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYW 539
+ V L+ + KD + L + L IPL Y A A YW
Sbjct: 539 DPGVDALIERVIFAKDRETLVAATKALDRVLLAHNYVIPLYYKLA---AQIAYW 589
>gb|AAC69837.1| (AF076683) oligopeptide transporter putative substrate binding
domain [Staphylococcus aureus]
Length = 486
Score = 86.6 bits (211), Expect = 8e-16
Identities = 107/404 (26%), Positives = 181/404 (44%), Gaps = 58/404 (14%)
Query: 79 IYDPL----KDKLEPWLAESGKW-ISDN--TYRVVLKEGLTWQDGKPLTAEDVKFTFDYA 131
IY+PL KD ++P LA+ KW +S++ TY L++ + + DG P A+ VK D
Sbjct: 16 IYEPLVRNTKDGIKPLLAK--KWDVSEDGKTYTFHLRDDVKFHDGTPFDADAVKKNIDAV 73
Query: 132 KEHKGL-SYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNIDKP 190
+E+K L S+ I + VKV D TV+ E + L +A+ +++ + P
Sbjct: 74 QENKKLHSWLKISTLIDNVKVKDKYTVELNLKEAYQPA----LAELAMPRPYVFVS---P 126
Query: 191 ESFAN--TENPI----GSGMYKL--YKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIV 242
+ F N T++ + G+G +KL +K D+ +ND++WG K K V+
Sbjct: 127 KDFKNGTTKDGVKKFDGTGPFKLGEHKKDESADFN-KNDQYWGEK---SKLNKVQAKVMP 182
Query: 243 YSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHL----PINTAFLFLNT 298
LSM KG+ +++ F D K + D Y + P+NT L +N+
Sbjct: 183 AGETAFLSMK-KGETNFA-FTDDRGTDSLDKDSLKQLKDTGDYQVKRSQPMNTKMLVVNS 240
Query: 299 QKPP--LNNPMFRRAIAYAINPKEIAARASQNQVKPA------DPTGLLIDYPVFKKIYY 350
K +++ R+AI + +N +IA Q KPA + T + D P K
Sbjct: 241 GKKDNAVSDKTVRQAIGHMVNRDKIAKEILDGQEKPATQLFAKNVTDINFDMPTRK---- 296
Query: 351 PEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMAR 410
YD KA +LD+ G+K R+ DGK L+ + G + E A
Sbjct: 297 ----------YDLKKAESLLDEAGWKKGKDSDVRQK-DGKNLEMAMYYDKGSSSQKEQAE 345
Query: 411 VISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVY 454
+ + + +GI+++ K + T G++D++ N +Y
Sbjct: 346 YLQAEFKKMGIKLNINGETSDKIAERRTSGDYDLMFNQTWGLLY 389
>dbj|BAB04286.1| (AP001509) nickel transport system (nickel-binding protein)
[Bacillus halodurans]
Length = 539
Score = 86.2 bits (210), Expect = 1e-15
Identities = 120/492 (24%), Positives = 200/492 (40%), Gaps = 59/492 (11%)
Query: 54 PNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNT-YRVVLKEGLT 112
P+ +NP+ +A +IYE L Y +L+P LA+S D Y L+EG+
Sbjct: 57 PHVYNPSQLFAQ-----SMIYEPLVSYTE-GGELQPHLADSWTISEDGKEYTFKLREGVQ 110
Query: 113 WQDGKPLTAEDVKFTFDYAKEHKGL-SYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKY 171
+ DG P AE VK FD EH L S+ + L++ +VVD T + EP+Y
Sbjct: 111 FSDGTPFNAEIVKKNFDTWIEHSSLHSWLGVMNVLEKTEVVDEFTFKMVLKEPYYPA--- 167
Query: 172 WLYNIAII-PEHIWKNI---DKPESFANTENPIGSGMYKL--YKTDQMRFILVRNDKWWG 225
L ++A++ P D ++ + PIG+G + L YK D+ + RN +WG
Sbjct: 168 -LQDLAVVRPVRFLGEAGFPDDGDTSQGIKEPIGTGPWMLSDYKQDEYA-VFTRNPNYWG 225
Query: 226 IKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKA--------KYGIV 277
P + I+ + G+LD F GV + A +YG
Sbjct: 226 ----ESPKIDKVTVKIIPDAETRVLAFESGELDL--IFGEGVISMDAFNQLKESGQYG-- 277
Query: 278 TWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTG 337
P+ T L LNT L + R A+ + N + + + + AD
Sbjct: 278 -----TDLSEPVGTRSLLLNTSNEKLADLRVRLALHHGFNKQAMVEGVTLGLEEKADNI- 331
Query: 338 LLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIE 397
L ++P P YD +AN LD+ G++ G RE +G+ L+ +E
Sbjct: 332 LSTNFPYTDIDVEP-------IEYDVEQANAYLDEAGWELPAGKTVRE-KNGEQLE--LE 381
Query: 398 VPYGWTDWME--MARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYA 455
+ Y TD ++ MA + + +G+++D + G+FD+ +F Y
Sbjct: 382 LIYDKTDPLQKAMAETMQAEWAAIGVKLDITGLELTTQIQRRRAGDFDV---DFWYN-YG 437
Query: 456 TPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEI 515
P+ + F VA G + E + E +R DE ++ + Y +
Sbjct: 438 APYDPHS--FINVVAEAGWGVAEAHSNLSMKEELDEQVRATLASTDETERQELYGSILNT 495
Query: 516 FLKDLPYIPLIY 527
+ ++P+ Y
Sbjct: 496 LQEQSVFVPISY 507
>dbj|BAA15142.1| (D90789) Periplasmic dipeptide transport protein precursor
(Dipeptide-binding protein) (DBP). [Escherichia coli]
>gi|1742438|dbj|BAA15152.1| (D90790) Periplasmic
dipeptide transport protein precursor (Dipeptide-binding
protein) (DBP). [Escherichia coli]
Length = 562
Score = 85.8 bits (209), Expect = 1e-15
Identities = 116/472 (24%), Positives = 193/472 (40%), Gaps = 69/472 (14%)
Query: 74 YETLFIYDPLKDK----LEPWLAESGKWISDNT-YRVVLKEGLTWQDGKPLTAEDVKFTF 128
Y+ L Y DK +E LA S K D + LK+ + DG P+TAE VK +F
Sbjct: 107 YQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSF 166
Query: 129 DYAKEHKGLSYSPIWGWLKEVKV--VDNRTVDFIFSEPHYEEWKYWL-------YNIAII 179
+ + + P + K++K+ D TV F S+P + + Y L N A++
Sbjct: 167 ERLLK---IGQGPAEAFPKDLKIDAPDEHTVKFTLSQP-FAPFLYTLANDGASIINPAVL 222
Query: 180 PEHIWKNIDKPESFANTENPIGSGMYKLYKTDQ-MRFILVRNDKWWGIKYYGKPAPKYIV 238
EH D F +N GSG + L + + +LV N + G KP K +
Sbjct: 223 KEHA---ADDARGFL-AQNTAGSGPFMLKSWQKGQQLVLVPNPHYPG----NKPNFKRVS 274
Query: 239 YVIVYSNNLALSMLVKGDLDWSNFF-IPGVPDVKAKYGI-VTWYDKQPYHLPINTAFLFL 296
I+ + L +GD+D ++ + + +K + + V Y + +L+L
Sbjct: 275 VKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPS------LRVTYLYL 328
Query: 297 NTQKPPLNNPMFRRAIAYAINPKEIA---ARASQNQVKPADPTGLLIDYPVFKKIYYPEA 353
N K PLN RRAI+++ + + + + Q++ P G+ Y
Sbjct: 329 NNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMW---------GYDAT 379
Query: 354 VKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVIS 413
+Y +D KA D++ KP T +W +A
Sbjct: 380 AMQYN--HDETKAKAEWDKV--------------TSKPTSLTFLYSDNDPNWEPIALATQ 423
Query: 414 EQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIG 473
L +GI V + D + KG++D+ I N+ S +A P+ + N+ F D
Sbjct: 424 SSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNW-SPDFADPYMFMNYWFESD----- 477
Query: 474 KPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPL 525
K GN Y+N V +LLR D+ ++ + Y + Q+I + D Y+ L
Sbjct: 478 KKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYL 529
>sp|P76128|YDDS_ECOLI PUTATIVE BINDING PROTEIN YDDS PRECURSOR >gi|7442325|pir||B64902
probable oligopeptide-binding periplasmic protein b1487
precursor - Escherichia coli >gi|1787762|gb|AAC74560.1|
(AE000245) putative hemin-binding lipoprotein
[Escherichia coli K12]
Length = 516
Score = 85.8 bits (209), Expect = 1e-15
Identities = 116/472 (24%), Positives = 193/472 (40%), Gaps = 69/472 (14%)
Query: 74 YETLFIYDPLKDK----LEPWLAESGKWISDNT-YRVVLKEGLTWQDGKPLTAEDVKFTF 128
Y+ L Y DK +E LA S K D + LK+ + DG P+TAE VK +F
Sbjct: 61 YQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSF 120
Query: 129 DYAKEHKGLSYSPIWGWLKEVKV--VDNRTVDFIFSEPHYEEWKYWL-------YNIAII 179
+ + + P + K++K+ D TV F S+P + + Y L N A++
Sbjct: 121 ERLLK---IGQGPAEAFPKDLKIDAPDEHTVKFTLSQP-FAPFLYTLANDGASIINPAVL 176
Query: 180 PEHIWKNIDKPESFANTENPIGSGMYKLYKTDQ-MRFILVRNDKWWGIKYYGKPAPKYIV 238
EH D F +N GSG + L + + +LV N + G KP K +
Sbjct: 177 KEHA---ADDARGFL-AQNTAGSGPFMLKSWQKGQQLVLVPNPHYPG----NKPNFKRVS 228
Query: 239 YVIVYSNNLALSMLVKGDLDWSNFF-IPGVPDVKAKYGI-VTWYDKQPYHLPINTAFLFL 296
I+ + L +GD+D ++ + + +K + + V Y + +L+L
Sbjct: 229 VKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPS------LRVTYLYL 282
Query: 297 NTQKPPLNNPMFRRAIAYAINPKEIA---ARASQNQVKPADPTGLLIDYPVFKKIYYPEA 353
N K PLN RRAI+++ + + + + Q++ P G+ Y
Sbjct: 283 NNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMW---------GYDAT 333
Query: 354 VKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVIS 413
+Y +D KA D++ KP T +W +A
Sbjct: 334 AMQYN--HDETKAKAEWDKV--------------TSKPTSLTFLYSDNDPNWEPIALATQ 377
Query: 414 EQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIG 473
L +GI V + D + KG++D+ I N+ S +A P+ + N+ F D
Sbjct: 378 SSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNW-SPDFADPYMFMNYWFESD----- 431
Query: 474 KPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPL 525
K GN Y+N V +LLR D+ ++ + Y + Q+I + D Y+ L
Sbjct: 432 KKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYL 483
>pir||B72289 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981698|gb|AAD36226.1|AE001772_5 (AE001772)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 503
Score = 85.4 bits (208), Expect = 2e-15
Identities = 127/532 (23%), Positives = 216/532 (39%), Gaps = 79/532 (14%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNN----FNPTVSWA 64
MKKLV ++ LS +A+ +V G R P N F+ +
Sbjct: 3 MKKLVWLFLILTVTLSFAAKDIIVVGTTDKIRT----------LDPANCYDYFSSNILQN 52
Query: 65 AVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNT---YRVVLKEGLTWQDGKPLTA 121
+ G + Y+ L+P LAE +W D T Y L++ ++DG P+ A
Sbjct: 53 VMVGLVD--------YEIGTSVLKPVLAE--RWEVDETGTVYTFYLRKDAKFEDGTPIDA 102
Query: 122 EDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPE 181
K++FD + G + +++ +VVD+ T P Y +A
Sbjct: 103 HVFKYSFDRVMKLNGDPAFLLSDVVEKTEVVDDYTFRVTLKYPFSAFVSVLGYTVAY--- 159
Query: 182 HIWKNIDKPESFANTENPIGSGMYKLYK-TDQMRFILVRNDKWWGIKYYGKPAPKYIVYV 240
+ + +SF P SG Y++ + +R +L N ++G KP K IV +
Sbjct: 160 PVNPKVYPADSFYEGI-PSASGPYRVKEWIRDVRIVLEANPNYFG----EKPKTKTIV-I 213
Query: 241 IVYSNNLALSMLVK-GDLD--WSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLN 297
Y N L + ++ G++D + + V D++ + IV + P +L +N
Sbjct: 214 NFYENASTLRLALETGEIDVAYRHLDPRDVIDLEGREDIVVYKGNSP-----QIRYLVIN 268
Query: 298 TQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPAD---PTGLLIDYPVFKKIYYPEAV 354
+PP +N R+A+AY++N I KP P G+ VF PE
Sbjct: 269 VTQPPFDNVKVRQALAYSVNRDVIVEDVFVGLAKPLYSMIPEGMWGHKDVF-----PER- 322
Query: 355 KKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISE 414
D KA +L + GY + N P L +T YG T+ ++A+V+ E
Sbjct: 323 -------DLEKARALLKEAGYDENN-------PLVIDLWYTPS-HYGTTE-ADVAQVLKE 366
Query: 415 QLQMVG-IRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIG 473
+ G I+V+ K+ ++ Y + G + + + Y P + W F +
Sbjct: 367 SFEETGVIKVNLKYAEWSTYVEYFLNGTMGLFLLGWYPD-YLDPDDYV-WPFLSESGAKS 424
Query: 474 KPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPL 525
++ Y N V L+ D K+ + Y+++QEI +D+PYIPL
Sbjct: 425 LGSF------YSNPEVENLMIEARKLTDLEKRTEIYYKVQEILARDVPYIPL 470
>gb|AAB34223.1| (S75873) 60 kda antigen [Borrelia coriaceae]
Length = 514
Score = 85.0 bits (207), Expect = 2e-15
Identities = 113/482 (23%), Positives = 198/482 (40%), Gaps = 72/482 (14%)
Query: 88 EPWLAESGKW-ISDN--TYRVVLKEGLTWQDGKPLTAEDVKFTF-DYAKEHKGLSYSPI- 142
+P LA+S W ISDN Y L+EG+ W DG P+TAE ++ ++ + G Y I
Sbjct: 73 KPGLAQS--WDISDNGLVYTFHLREGIIWSDGVPITAEGIRRSYLRVLNKETGSQYVDIV 130
Query: 143 -----------WGWLKE----VKVVDNRTVDFIFSEPHYEEWKYWLYNIA---IIPEHIW 184
G + E +K +D+ T++ P Y+L +A IP +
Sbjct: 131 KSTIKNAKDYFEGKIPESELGIKTIDDSTLEITLVAPK----PYFLDMLAHQTFIPVPVH 186
Query: 185 KNIDKPESFANTENPIGSGMYKL-YKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVY 243
+++ N EN + SG YKL + + +L +NDK++ + I Y +
Sbjct: 187 AIEQYGKAWTNPENIVVSGAYKLKTRIPNEKIVLEKNDKYYNAS--NVEIDEVIFYHV-- 242
Query: 244 SNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPIN-TAFLFLNTQKPP 302
N A +M + ++D+ + V ++Y Y PIN ++ NT P
Sbjct: 243 QGNTAYNMYINDEVDF-------LTKVASEYLDEARIRNDYYSHPINRVLYMAFNTTIKP 295
Query: 303 LNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYD 362
L+N R A+ AI+ + + + Q KP P F Y + +K +D
Sbjct: 296 LDNVKVREALTLAIDREALNKIHLKGQSKPTRNL-----TPQFDHYSYGKQLK----LFD 346
Query: 363 PAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQL-QMVGI 421
P +A ++L + GY NG G+ LK+ G A + EQL +++ I
Sbjct: 347 PQRAQQLLAEAGYP--NGAGF------PTLKYKTSQRNGMA---ITAEFLQEQLKKILNI 395
Query: 422 RVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNW 481
++ + ++ + + GN+ M + Y P + +F + G YS
Sbjct: 396 NIEIEIEEWNTFLSSRSTGNYQMSFMGWTGD-YPDPLTFLESLFTTENQGFGAYGYS--- 451
Query: 482 GRYKNERVAELLRLINTEKDENKKIQYYHELQEIFL-KDLPYIPLIYNGAWFEASTQYWT 540
N++ L+ N KD ++ + + + I + +D P PL +++ WT
Sbjct: 452 ----NKKYDNLIEQSNFIKDPIQRQEILRQAEAIIVEEDFPVAPLSILKSYYLFRHDKWT 507
Query: 541 NW 542
W
Sbjct: 508 GW 509
>pir||B75027 hypothetical protein PAB1193 - Pyrococcus abyssi (strain Orsay)
>gi|5459170|emb|CAB50656.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 931
Score = 84.7 bits (206), Expect = 3e-15
Identities = 46/89 (51%), Positives = 58/89 (64%), Gaps = 8/89 (8%)
Query: 559 WQMGGLKVLLNIKPAKATTTSSPTTT-----PTKTTSSPTSTPTPTQTPSTSSPTATSTS 613
W G ++ +K T+ + T PT T+ T+T TP QT SSPTAT TS
Sbjct: 844 WSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQTTTSTPQQT---SSPTATGTS 900
Query: 614 PTETTTKGGICGPALLVGIAVVPILLRKR 642
PTETTTKGGICGPA+LVG+AV+P+LLR+R
Sbjct: 901 PTETTTKGGICGPAILVGLAVLPLLLRRR 929
>pir||G83419 probable binding protein component of ABC transporter PA1810
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9947794|gb|AAG05199.1|AE004607_5 (AE004607) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 615
Score = 83.9 bits (204), Expect = 5e-15
Identities = 108/438 (24%), Positives = 168/438 (37%), Gaps = 68/438 (15%)
Query: 55 NNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPW-----LAESGKWISDNTY-RVVLK 108
++ NP + ++GLIY+TL + + EP+ LAE + DN+Y R L+
Sbjct: 67 DSLNPFIGKGVSAPSLGLIYDTL----AFQSQDEPFTEYGLLAEKIEKAPDNSYVRFYLR 122
Query: 109 EGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEE 168
+ DG P+TAEDV FTF+ Y + + +V D V F F E
Sbjct: 123 PQARFSDGTPVTAEDVVFTFETLVSKGDPMYRNYYADVDKVVAEDKLRVRFDFKHAGNRE 182
Query: 169 WKYWLYNIAIIPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKY 228
L IAI+P+H W D+ S E P+GSG Y++ K D R I K W K
Sbjct: 183 LPLILGQIAILPKHWW--ADRDFSKTGMEIPVGSGPYRIAKVDPGRSISYERVKDWWAKD 240
Query: 229 YGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTW---YDKQPY 285
Y I + +S+ ++ F G DV +Y W Y+
Sbjct: 241 LPVSRGLYNFDTITIDSYRDMSVALEA-------FKAGQYDVNLEYSAKDWATGYESPAL 293
Query: 286 ------------HLPINTAFLFLNTQKPPLNNPMFRRAIAYAIN---------------- 317
H P+ N ++P + R+AI+ +
Sbjct: 294 RDGRFIKASIHNHNPVGMQGFAFNIRRPVFQDRRVRQAISLLFDFEWSNKQLFFSSYKRT 353
Query: 318 -----PKEIAAR--ASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDP-AKANEI 369
E+AA S+ ++K +P I F +++ G + KA ++
Sbjct: 354 NSYFENSEMAAHQLPSEAELKILEPLRGKIPDEAFDQVFQNPVNDGSGVIREQRRKAYQL 413
Query: 370 LDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVI---SEQLQMVGIRVDPK 426
L + GY+ N PDG+PL F + M RVI L +GI + +
Sbjct: 414 LTEAGYRIEN--NRMVGPDGQPLSFEFMLFQA-----NMERVILPFKRNLAELGIDMQIR 466
Query: 427 FPDYGKYWDDLTKGNFDM 444
D ++ + L +FDM
Sbjct: 467 RVDVSQFVNRLRSRDFDM 484
>sp|P33590|NIKA_ECOLI NICKEL-BINDING PERIPLASMIC PROTEIN PRECURSOR >gi|628766|pir||S39594
nickel-binding periplasmic protein precursor -
Escherichia coli >gi|404845|emb|CAA51659.1| (X73143)
NikA [Escherichia coli] >gi|466612|gb|AAB18451.1|
(U00039) nikA [Escherichia coli]
>gi|1789887|gb|AAC76501.1| (AE000423) periplasmic
binding protein for nickel [Escherichia coli K12]
Length = 524
Score = 83.5 bits (203), Expect = 7e-15
Identities = 111/471 (23%), Positives = 186/471 (38%), Gaps = 48/471 (10%)
Query: 72 LIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLTWQDGKPL----TAEDVKF 126
++YE L Y + PWLA+S D T+ L++ + + +G+P AE+ +
Sbjct: 54 MVYEPLVKYQA-DGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDAEAAAENFRA 112
Query: 127 TFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKN 186
D + H L + + +VK + + +Y +L +A+ P
Sbjct: 113 VLDNRQRHAWLELA---NQIVDVKALSKTELQITLKSAYYP----FLQELAL-PRPF--R 162
Query: 187 IDKPESFANTEN------PIGSGMYKLYKTDQMRF-ILVRNDKWWGIKYYGKPAPKYIVY 239
P F N E PIG+G + L ++ ++ + VRN+ +WG KPA K I +
Sbjct: 163 FIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWG----EKPAIKKITF 218
Query: 240 VIVYSNNLALSMLVKGDLDWSNFFIPGVP-DVKAKYGIVTWYDKQPYHLPINTAFLFLNT 298
++ GD+D +P D A++ Y Q PI T L LNT
Sbjct: 219 NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQ-LSQPIETVMLALNT 277
Query: 299 QKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYG 358
K P N R A+ YA+N K + A + AD T P P
Sbjct: 278 AKAPTNELAVREALNYAVNKKSLIDNALYGTQQVAD-TLFAPSVPYANLGLKPS------ 330
Query: 359 FTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWM--EMARVISEQL 416
YDP KA +L++ G+ G RE +G+PL+ IE+ + TD + MA +I +
Sbjct: 331 -QYDPQKAKALLEKAGWTLPAGKDIRE-KNGQPLR--IELSFIGTDALSKSMAEIIQADM 386
Query: 417 QMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPT 476
+ +G V + + G F MI + Y P + + + P A
Sbjct: 387 RQIGADVSLIGEEESSIYARQRDGRFGMIFHRTWGAPY-DPHAFLSSMRVPSHA-----D 440
Query: 477 YSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
+ G + + + + DE ++ Y ++ + Y+P+ Y
Sbjct: 441 FQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISY 491
>gi|10955080 agaA [Agrobacterium tumefaciens] >gi|11277227|pir||T45529 agaA
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665705|gb|AAB88465.1| (AF242881) agaA
[Agrobacterium tumefaciens]
Length = 509
Score = 82.7 bits (201), Expect = 1e-14
Identities = 114/493 (23%), Positives = 190/493 (38%), Gaps = 55/493 (11%)
Query: 43 TLYVGGGLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNT 102
TLY G L +P+ + V T+ L + + K+ P LAES + D
Sbjct: 26 TLYFG--LSGEPSTLDTVVQPGTSGRTVKLAIHRGLVNYGIDGKISPELAESYEVSPDAK 83
Query: 103 YRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHKG-LSYSPIWGWLKEVKVVDNRTVDFIF 161
+ DG +T+ DVK + + + KG S+ + +++ D +TV
Sbjct: 84 EFTFHLRQAKFHDGTTVTSADVKASLERILDPKGKASFRNELSSISKIETPDEKTVKLTL 143
Query: 162 SEPHYEEWKYWLYNIAIIPEHIW--KNIDKPESFANTENPIGSGMYKLYKTDQMRFILVR 219
S P Y ++I W KN D P + P+G+G +K + R I V+
Sbjct: 144 STPSVAMIDYLALPESVIVPAAWLAKNADNPNAA-----PVGAGPFKFAGWTRGREITVK 198
Query: 220 NDKWWGIKYY--GKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIV 277
YY GKP + YV N ++ L GD+D ++ +P G
Sbjct: 199 KFD----DYYKKGKPDLDEVHYVFYSDENTRVNALKSGDVDIIDY-VPAKDAADIAKGPE 253
Query: 278 TWYDKQPYHLPINTA---FLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPAD 334
T L NT L NT+ P + P R+AIAYA++ I A P
Sbjct: 254 T-------QLLRNTGPFMGLQFNTKFEPFSKPEVRQAIAYAVDRSAIINTAFNGLGSPIF 306
Query: 335 PTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKF 394
+ Y + Y +A Y F++ KA +L + GY P+G ++
Sbjct: 307 GIAIPKGY-----MGYSDAKANY-FSHHVEKAKALLAKAGY-----------PNGFEVRL 349
Query: 395 TIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVY 454
Y + A I +L +GI+V PD+ + G++D + GS
Sbjct: 350 LATSQYSFQ--QNTAIAIQSELAKIGIKVKLDLPDWASRMAKASTGDYDFTV--MGSLGE 405
Query: 455 ATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQE 514
T W + +Y K + N + ++++ +LL D+ ++++ Y +
Sbjct: 406 ITDADWLSNYYYGG----DKLVRTNNSPYFNDQQINDLLDKGRATVDKAERVKIYDAFVD 461
Query: 515 IFLKDLPYIPLIY 527
+ L PL+Y
Sbjct: 462 ---RALELSPLVY 471
>pir||A82356 peptide ABC transporter, periplasmic peptide-binding protein VC0171
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9654574|gb|AAF93347.1| (AE004107) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 542
Score = 82.3 bits (200), Expect = 2e-14
Identities = 112/496 (22%), Positives = 201/496 (39%), Gaps = 75/496 (15%)
Query: 71 GLIYETLFIYDPL-----KDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVK 125
G + + ++DPL K + EP LAES + + + T R L++G+ + G TA+DV
Sbjct: 70 GTLQLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVV 129
Query: 126 FTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDF--IFSEPHYEEWKYWLY--------- 174
+TF+ KE + I+ L + VD+ T++ + P E +++
Sbjct: 130 WTFNRLKE--SADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTG 187
Query: 175 ------NIAIIPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQ-MRFILVRNDKWWGIK 227
N A I +H SFA+ EN G+G + + +Q ++ RN +W
Sbjct: 188 TTADGKNKAEIVKH-------GNSFAS-ENISGTGPFTVTAREQGVKLEFQRNPNYWDKA 239
Query: 228 YYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHL 287
G + ++ + ++ L+ G +D P P+ + D + +
Sbjct: 240 SKGNVDK--LTLAVIKEDATRVAALLSGGVD---MIAPVSPNDYQRIKDAKGVDL--FTM 292
Query: 288 PINTAFLFLNTQK--PPLNNPMFRRAIAYAINPKEIAARASQNQVKPA---DPTGLLIDY 342
P F Q P L + R+AI YAIN + I + + A P G Y
Sbjct: 293 PGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVG----Y 348
Query: 343 PVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYG- 401
+ + P +D KA E++ + GY+ K T+ P
Sbjct: 349 AGYNENLKPR--------FDLNKAKELMKEAGYE-------------KGFNLTMIAPNNR 387
Query: 402 WTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWF 461
+ + ++A+ S L +GI+VD K +YW + K DM++ + + +
Sbjct: 388 YVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSA-NFT 446
Query: 462 NWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLP 521
++ + GK Y N G Y N V +L+ N E D K+ +++EI +
Sbjct: 447 EFLTMTRDSNTGKGQY--NCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAA 504
Query: 522 YIPLIY-NGAWFEAST 536
++PL + + +W +T
Sbjct: 505 FVPLHFQDPSWAAKNT 520
>pir||S77182 oligopeptide transport system permease protein appA - Synechocystis
sp. (strain PCC 6803) >gi|1652821|dbj|BAA17740.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 631
Score = 81.9 bits (199), Expect = 2e-14
Identities = 136/524 (25%), Positives = 208/524 (38%), Gaps = 69/524 (13%)
Query: 52 SQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEG 110
S P FN +S + G IYE L +PL + P LAES + DN T LKEG
Sbjct: 73 SDPKTFNAVLSQES-PNVFGYIYEGLIRENPLTGERTPALAESWEISPDNLTITFTLKEG 131
Query: 111 LTWQDGKPLTAEDVKFTFD--YAKEHKGLSYS---PIWGWLKEVKV--VDNRTVDFIFSE 163
L W DGKPLT +DV F+++ Y +Y + E K+ V +R V F E
Sbjct: 132 LRWSDGKPLTVDDVLFSYNDLYLNPKIPNNYRDSLKVGESQAEPKITKVGDRQVAFNIPE 191
Query: 164 PHYEEWKYWLYNIAIIPEHIWK-NIDKPESFAN--------TENP----IGSGMYKL--Y 208
P + I+P HI + ++K + N T P + +G YKL Y
Sbjct: 192 PFAPFLE--TAQFPILPAHILRETVEKTDENGNPLFLSTWGTNTPPDQIVVNGPYKLTRY 249
Query: 209 KTDQMRFILVRNDKWWGIKYYGKPAP--KYIVYVIVYSNNLALSMLVKGDLDWSNFFIP- 265
T Q R I +N +W G+ P +V+ IV S + +L G LD + +P
Sbjct: 250 VTSQ-RVIFSKNPYYWEKGPNGESLPYIPRVVWAIVESTDTSLLQFRSGSLD--SLGVPP 306
Query: 266 ---GVPDVKAKYGIVTWYDKQPYHLPINTAFLFLN-----TQKPPL---------NNPMF 308
+ + + G Y+ P + +++L N Q PL NN F
Sbjct: 307 ESFSLLKQEEERGNFVIYNGGPTYA---SSYLTFNLNQGKRQGKPLVDPIKSRWFNNLNF 363
Query: 309 RRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANE 368
R+AIAY I+ + + + + + PV + P+ VK Y YDP KA
Sbjct: 364 RQAIAYGIDRERMVNNIYRGLGEKQNSF-----IPVQSPFFNPD-VKVY--NYDPEKAQA 415
Query: 369 ILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFP 428
+L G+ N G ++F + G M I E L +GI+VD
Sbjct: 416 LLKAGGF-TYNNQRQLLDDRGNRVRFVLNTNAGNKVREAMGTQIQEDLGKLGIQVDFSPI 474
Query: 429 DYGKYWDDLTKG-NFDMIINNF-GSQVYATPWQWF---NWVFYPDVAPIGKPTYSGNWGR 483
+G D L+ +D ++ G P W+ N + G G
Sbjct: 475 SFGVLVDKLSNSLEWDAVVLGLTGGNDPHIPNVWYVKGNLHMFNQHPQAGAQPLEGQTVA 534
Query: 484 YKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
+ +A+L + + ++ Y ++Q L+ Y+P IY
Sbjct: 535 PWEQNIADLALKGSQIIPQQERSLVYDQMQ---LEVQEYLPFIY 575
>sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRECURSOR
(DIPEPTIDE-BINDING PROTEIN) (DBP) >gi|95763|pir||A39194
periplasmic dipeptide transport protein precursor dppA -
Escherichia coli >gi|42475|emb|CAA41090.1| (X58051)
dipeptide binding protein (DBP) [Escherichia coli]
>gi|145797|gb|AAA23707.1| (M35045) dipeptide transporter
protein [Escherichia coli] >gi|349225|gb|AAA23702.1|
(L08399) dipeptide-binding protein [Escherichia coli]
>gi|466683|gb|AAB18522.1| (U00039) dppA [Escherichia
coli] >gi|1789966|gb|AAC76569.1| (AE000431) dipeptide
transport protein [Escherichia coli K12]
Length = 535
Score = 81.9 bits (199), Expect = 2e-14
Identities = 128/545 (23%), Positives = 211/545 (38%), Gaps = 82/545 (15%)
Query: 19 GLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTGTIGLI--YET 76
G+ L +S VA +Q +Y G P FNP + + T + Y
Sbjct: 9 GMLKLGLSLVAMTVAASVQA--KTLVYCSEG---SPEGFNPQLFTSGTTYDASSVPLYNR 63
Query: 77 LFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLTWQDGKP------LTAEDVKFTFD 129
L + ++ P LAE + D TY L++G+ W D K L A+DV F+FD
Sbjct: 64 LVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFD 123
Query: 130 YAKE-----HK--GLSYSPIWGW-----LKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIA 177
K HK G SY G + EVK VD+ TV F+ + P + A
Sbjct: 124 RQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFA 183
Query: 178 IIPEHIWKNI----DKPESFANTENPIGSGMYKL--YKTDQMRFILVRNDKWWGIKYYGK 231
I + + PE NPIG+G ++L Y+ D R D +WG K
Sbjct: 184 SILSKEYADAMMKAGTPEKL--DLNPIGTGPFQLQQYQKDS-RIRYKAFDGYWGTK---- 236
Query: 232 PAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLP-I 289
P +V+ I ++ + L K + + P + +K I +P +
Sbjct: 237 PQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSI------NLMEMPGL 290
Query: 290 NTAFLFLNTQKPPLNNPMFRRAIAYAINPKEI------AARASQNQVKPADPTGLLIDYP 343
N +L N QK PL++ R+A+ YA+N I A S + P G
Sbjct: 291 NVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWG------ 344
Query: 344 VFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT 403
Y + V+ Y TYDP KA +L + G + G+ P ++ PY
Sbjct: 345 ------YNDDVQDY--TYDPEKAKALLKEAGLE----KGFSIDLWAMP----VQRPYN-P 387
Query: 404 DWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNW 463
+ MA +I VG++ ++G+Y G ++ + P +F
Sbjct: 388 NARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGD-NGDPDNFFAT 446
Query: 464 VFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYI 523
+F + G N+ ++ + +L++ D NK+++ Y + Q + P +
Sbjct: 447 LFSCAASEQG-----SNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPAL 501
Query: 524 PLIYN 528
+ ++
Sbjct: 502 IIAHS 506
>gb|AAC67217.1| (U78968) surface lipoprotein DppA [Streptococcus pyogenes]
Length = 542
Score = 81.9 bits (199), Expect = 2e-14
Identities = 128/496 (25%), Positives = 209/496 (41%), Gaps = 78/496 (15%)
Query: 37 QLPRNETLYVGGGLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDP---LKDKLEPW--L 91
Q P++E + G P+ F+P + V + + TL P +K +L L
Sbjct: 37 QRPKDELVVSMGA--KLPHEFDPKDRYG-VHNEGNITHSTLLKRSPELDIKGELAKTYHL 93
Query: 92 AESG-KWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWG--WLKE 148
+E G W+ D L + + +G+P TA+DVKFT+D K + W ++K
Sbjct: 94 SEDGLNWLFD------LHDDFKFSNGEPATADDVKFTYDMLK-----ADGKAWDLTFIKN 142
Query: 149 VKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNIDKPESFANTENPIGSGMY--K 206
V+VV ++ +E H + L I I+P+ + DK +S NPIGSG Y K
Sbjct: 143 VEVVGENQINIHLTEAH-STFTAQLTEIPIVPKKHYN--DKYKS-----NPIGSGPYMVK 194
Query: 207 LYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPG 266
YK + + I VRN W G K Y K ++ N AL+ L GD+D + P
Sbjct: 195 EYKAGE-QAIFVRNPYWHGKKPYFKKWT-----WVLLDENTALAALESGDVDMI-YATPE 247
Query: 267 VPDVKAK---YGIVTWYDKQPYHLP-INTAFLFLNTQKPPLNN-----PMFRRAIAYAIN 317
+ D K K + D + LP + + ++ P+ N P R+A+ +N
Sbjct: 248 LADKKVKGTRLLDIPSNDVRGLSLPYVKKGVITDSSDGYPVGNDVTSDPAIRKALTIGLN 307
Query: 318 PKEIAARASQNQVKPADPTGLLIDYPVFKK--IYYPEAVKKYGFTYDPAKANEILDQLGY 375
+++ KPA Y + K + P+ K AKA ++L + G+
Sbjct: 308 RQKVLDTVLNGYGKPA--------YSIIDKTPFWNPKTAIK---NNKLAKAKQLLTKAGW 356
Query: 376 KDINGDGYRETPDGKPLKFTIEVPYGWTDWM--EMARVISEQLQMVGIRVDPKFPDYGKY 433
K+ DG R+ D L ++ Y D + +A ++EQ + +GI + K
Sbjct: 357 KE-QADGSRKKGD---LDAPFDLYYPTNDQLRANLAVEVAEQAKTLGITIKLK----ASN 408
Query: 434 WDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELL 493
WD++ + D + G + +A Q F +P +A G N Y N V + L
Sbjct: 409 WDEMATKSHDSALLYAGGRHHA---QQFYESHHPSLAGKGWT----NITFYNNPTVTKYL 461
Query: 494 RLINTEKDENKKIQYY 509
T D +K +Y+
Sbjct: 462 DKAMTSSDLDKANEYW 477
>emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii]
Length = 528
Score = 81.1 bits (197), Expect = 3e-14
Identities = 112/520 (21%), Positives = 221/520 (41%), Gaps = 66/520 (12%)
Query: 50 LWSQPNNFNPTVSWAAV-TGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNT-YRVVL 107
L ++P++ +P ++ V + I +++ L DP +P LA+S D T Y L
Sbjct: 34 LGAEPSSLDPQLADDNVGSKMIDTMFKGLITGDPNTGGNKPGLAKSWDISPDGTVYTFTL 93
Query: 108 KEGLTWQDGKPLTAEDVKFTF-DYAKEHKGLSYSP-IWGWLKE---------------VK 150
+E + W DG +TAE ++ ++ + G +YS + +K ++
Sbjct: 94 REKIIWSDGVAITAEGIRKSYLRILNKETGSNYSEMVKSTIKNGQKYFDGQVSDSELGIR 153
Query: 151 VVDNRTVDFIFSEPHYEEWKYWLYNIAI-IPEHIWKNIDKPESFANTENPIGSGMYKL-Y 208
+D +T++ P ++ I IP HI + +S+ N EN + SG +KL
Sbjct: 154 AIDEKTLEITLESPKPYFIDMLVHQSFIPIPIHIAEKYG--QSWTNPENIVTSGPFKLKE 211
Query: 209 KTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVP 268
+ ++++ +NDK++ + + I + N+ A M G+LD IP P
Sbjct: 212 RIPNEKYVVEKNDKYYN---SNQVEVQEITFYTTNDNSTAYKMYENGELDAIFSAIP--P 266
Query: 269 DVKAKYGIVTWYDKQPYHLPINTAFLF-LNTQKPPLNNPMFRRAIAYAINPKEIAARASQ 327
D+ + + Y Y +N + + NT PL+N R+A+ AI+ + + +
Sbjct: 267 DLIKDLKLRSDY----YSSAVNAIYFYAFNTHIKPLDNVKVRKALTLAIDRETLTYKVLD 322
Query: 328 NQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETP 387
+ P P F Y + ++ ++P A +L + GY NG+G+
Sbjct: 323 DGTTPTRRI-----TPNFSSYSYAKNLE----LFNPEIAKTLLAEAGYP--NGNGF---- 367
Query: 388 DGKPLKFTIEVPYGWTD-WMEMARVISEQ-LQMVGIRVDPKFPDYGKYWDDLTKGNFDMI 445
P+ +++ Y ++ ++ I Q +++ I V+ + ++ Y + + GN+++
Sbjct: 368 ---PI---LKLKYNTSEAHKKICEFIQNQWKKILNIDVELENEEWTTYLNTKSNGNYEIA 421
Query: 446 INNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKK 505
+ YA P + + + G +S + Y + EL++ + E D K+
Sbjct: 422 RAGWIGD-YADP------LTFLSILTHGYTQFSSH--NYSSPEYNELIKKSDLELDPIKR 472
Query: 506 IQYYHELQEIFL-KDLPYIPLIYNGAWFEASTQYWTNWPT 544
+ +EI + KD P P+ G + WT W T
Sbjct: 473 QDILRKAEEIIIEKDFPIAPIYIYGNSYLFRNDKWTGWNT 512
>gb|AAK42787.1| ABC transporter, periplasmic component [Sulfolobus solfataricus]
Length = 693
Score = 81.1 bits (197), Expect = 3e-14
Identities = 158/709 (22%), Positives = 264/709 (36%), Gaps = 100/709 (14%)
Query: 12 LVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPN--------NFNPTVSW 63
L ++ + ++ S ++A P TLY+G W N +NP +
Sbjct: 7 LEVGVIFSISVMLFSISGIMIANSASSPFPSTLYLG---WYNSNVEAYSSFATYNPNIFA 63
Query: 64 AAVTGTI-GLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRV----------VLKEGLT 112
+ G+ GL+Y I + + P + S + N ++ +++
Sbjct: 64 GGLGGSFYGLLYAYSAIINVSNSQAIPVIITSWNFSPANWQQIWQTKPVNVTLIIRNDSG 123
Query: 113 WQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVD----FIFSEP---- 164
W +G+PLTA D+ T + G P + + +V+ D +F++
Sbjct: 124 WSNGQPLTAYDLMATC-LILDMFGAPPFPNYTVINNYTLVETWPPDTLSPILFTDTLINT 182
Query: 165 ----------HYEEWKYWLYNIA------------IIPEHIWKNIDKPESFANTENPIG- 201
Y+ WK + I + + I KNI + E NP
Sbjct: 183 VGLGEVAIIIPYQVWKPIISQIMGNWTTIQNTSNMKLAQQIIKNI-RSEILHFRPNPATY 241
Query: 202 --SGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGD--L 257
SG + L + +L +N ++ KY P + I+Y ++ LA + + G +
Sbjct: 242 PYSGPFYLSQLSSNEIVLNKNPYYYDAKYI--PFNQVIIYQYGQAD-LAAAAITGGQVSM 298
Query: 258 DWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAIN 317
DWS + G+ + + + T + P F N + P L R AIAY +N
Sbjct: 299 DWSG--LTGLSPTQLE-SLPTTLEVINIPQPFGWGIAF-NLKNPWLREYQVRAAIAYILN 354
Query: 318 PKEIAARASQNQVKPADPTGL--LIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGY 375
IA+ P + L Y Y ++ Y KA ++L +G+
Sbjct: 355 RTAIASVGGPLTAPVTIPNAIPNLSYYSFMTSSQYYSSLNPYNVNL--TKAAQLLKSVGF 412
Query: 376 KDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWD 435
+G Y TP+G P TI T + M + ++LQ GI V W
Sbjct: 413 YQKSGVWY--TPNGTPFTLTIGAGSPPTQALAMMEEVQKELQQFGINVQLHIYTVVSQWH 470
Query: 436 DLTKGN--FDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELL 493
+ +D+ N+GS W + Y P ++ N N + +
Sbjct: 471 QAWQNGTGYDLWFENWGSSYSPGTAPWSLVLSYFGGYPWNVTQWNENL-TLPNGTIIDFH 529
Query: 494 RLINTEKDENKKIQYYHELQEI--FLKD--LPYIPL-------IYNGAWFEASTQYWTNW 542
+L+ + N Q QE+ ++ LP +PL I N + A+ +W
Sbjct: 530 KLLEETESPNTTQQLIQANQELSYYMNQYLLPILPLVEIENYVIVNPSLLIAAPPA-NSW 588
Query: 543 PTEHNPYALPITWQ-----NYWQMGGLKVLLNIKPAKATTTSSPTTTPTKTTSSPTSTPT 597
E Y + T +YW L TTTS TT T TTS+ T+T +
Sbjct: 589 IWEEAQYGIGGTAMVQALIDYWYAP----LYESTIITTTTTSISTTITTTTTSATTATTS 644
Query: 598 PTQTPS--TSSPTATSTSPTETTTKGGICG--PALLVGIAVVPILLRKR 642
T T S T+S + T+ + T T+T I ++V IA V IL+R+R
Sbjct: 645 VTTTTSVTTTSISTTTVTVTSTSTIPIIIAIVIVIIVIIAAVAILMRRR 693
>pir||T35938 probable substrate binding protein - Streptomyces coelicolor
>gi|4158197|emb|CAA22760.1| (AL035206) putative
substrate binding protein [Streptomyces coelicolor
A3(2)]
Length = 542
Score = 80.8 bits (196), Expect = 5e-14
Identities = 122/521 (23%), Positives = 212/521 (40%), Gaps = 48/521 (9%)
Query: 49 GLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN--TYRVV 106
G+ S+P+ +P + + + I++ L D + L+P LA + ++D+ TY
Sbjct: 55 GVASEPDTLSPLLGYGKDGNS--KIFDGLLARDTDLE-LKPALAAALPKVTDDGRTYTFT 111
Query: 107 LKEGLTWQDGKPLTAEDVKFTFDYAKEHK--GLSYSPIWGWLKEVKVVDNRTVDFIFSEP 164
L+EG+ + DG+PLTA DV +T+ + K + S + ++ V+ + TV F P
Sbjct: 112 LREGVKFSDGEPLTAGDVVYTYRTVLDEKTNNTARSEL-DAVENVRASGDGTVVFTLKYP 170
Query: 165 HYEEWKYWLYNIAIIPEHIWKNIDKPESFANTENPIGSGMYKL---YKTDQMRFILVRND 221
+ + + I+PEH+ D NTE P+G+G Y L K +++ F N
Sbjct: 171 YAPFAARTV--LPIVPEHVAGKQDPNTGDFNTE-PVGTGPYVLTGWSKGEKLGF--RANP 225
Query: 222 KWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYD 281
+WG KPA K ++ +N+ + L GDLD + P + K Y
Sbjct: 226 HYWG----DKPAVKSFTMAVIADDNVRATRLRSGDLDGA-VLPPNLAATFEKDDARRTYR 280
Query: 282 KQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLID 341
+ Y T L + + RRA+ A++ + + + +PA L +D
Sbjct: 281 ARSYDFRAVT----LPSAGQVTGDRAIRRALDAAVDRQAMVDKILDGAGRPAYGP-LPVD 335
Query: 342 YPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYG 401
P +Y +++ D A A ILD+ G+K G G DG+ FT+ P G
Sbjct: 336 DP-----WYERGIER---PRDLAAAGRILDEAGWKP--GSGGIRARDGQRASFTLYYPSG 385
Query: 402 WTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDL-TKGNFDMIINNFGSQVYATPWQW 460
+ A + + GI V + G W+ + + D ++ GS P
Sbjct: 386 DKVRQDHALAYASDAKKAGIEVKVE----GATWEVIEPRMKTDAVLAGLGS--VGDPDFG 439
Query: 461 FNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDL 520
+ + +A G N Y N V E L +D + Y E+Q+ + D
Sbjct: 440 LYTLLHSTLAGDG----FNNMAHYANPAVDEALDAGRRSQDPKVRAAAYGEIQKALVADP 495
Query: 521 PYIPLIYNGAWFEASTQYWTNWPTEHNPYALPITWQNYWQM 561
Y L + + + + W T+ P+ +W +
Sbjct: 496 GYTFLTHIDHLYVLADR-WDGLTTQLEPHEHGFASGPWWNI 535
>gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic binding protein
[Borrelia burgdorferi]
Length = 541
Score = 79.6 bits (193), Expect = 1e-13
Identities = 121/530 (22%), Positives = 229/530 (42%), Gaps = 82/530 (15%)
Query: 44 LYVGGGLWSQPNNFNPTVSWAAVTGTIGL-----IYETLFIYDPLKDKLEPWLAESGKWI 98
+Y+GG P++ +P + V TIG I+ L + KL+P LA++ +
Sbjct: 41 VYIGGA----PSSLDPHL----VDETIGARILEQIFSGLLTLNTKTGKLKPGLAKNWEAS 92
Query: 99 SDN-TYRVVLKEGLTWQDGKPLTAEDVKFTF--DYAKEHKGLSYSPIWGWLKE------- 148
D TY+ L++ L W DG +TAE ++ +F KE + + +K
Sbjct: 93 KDKKTYQFYLRDNLFWSDGVEITAEGIRKSFLRILNKETGSTNVDMLKSIIKNGQEYFDG 152
Query: 149 --------VKVVDNRTVDFIFSEPHYEEWKYWL-YNIAIIPEHIWKNIDKPE-SFANTEN 198
+K +D++T++ + P + L Y +P H+ I+K + ++ + EN
Sbjct: 153 KVSDSELGIKAIDSKTLEITLTAPKPYFLELLLHYAFMPVPVHV---IEKYKGNWTSPEN 209
Query: 199 PIGSGMYKLYKT-DQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDL 257
+ SG +KL K + I +N++++ K + +VY+ ++ +M ++
Sbjct: 210 MVTSGPFKLKKRLPNEKIIFEKNERYYNAK---EVELDELVYITSDNDLTVYNMYKNNEI 266
Query: 258 DWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLF-LNTQKPPLNNPMFRRAIAYAI 316
D IP PD+ + + K Y N +L+ NT+ PL++ R A+ AI
Sbjct: 267 DAIFNSIP--PDIVNEIKL----QKDYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAI 320
Query: 317 NPKEIAARASQNQVKPA-DPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGY 375
+ + + + + P + T L +Y KK+ +DP K+ ++L GY
Sbjct: 321 DRETLTYKVLNDGTVPTREITPDLENYNYGKKLAL----------FDPEKSKKLLADAGY 370
Query: 376 KDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWD 435
NG G+ P+ T++ T A + ++ +++ I + ++ +
Sbjct: 371 P--NGKGF-------PM-LTLKYNTNETHKKIAAFIQNQWKKILNINLMLTNENWPVLTN 420
Query: 436 DLTKGNFDMI-INNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLR 494
GNF++I + G Y P +F +F + + + YS N +L+R
Sbjct: 421 SRNTGNFEIIRVGRIGE--YLDPHTYFT-IFTRENSQLASYGYS-------NLEFDKLIR 470
Query: 495 LINTEKDENKKIQYYHELQEIFL-KDLPYIPL-IYNGAWFEASTQYWTNW 542
+ EKD K+ Q + + I + KD P P+ IY+G + + + WT W
Sbjct: 471 ESDLEKDPIKRKQLLRKAESIIIEKDFPAAPIYIYSGHYLFRNDK-WTGW 519
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
>gi|1311041|pdb|1DPP|C Chain C, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311043|pdb|1DPP|E Chain E, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311045|pdb|1DPP|G Chain G, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 79.6 bits (193), Expect = 1e-13
Identities = 120/510 (23%), Positives = 199/510 (38%), Gaps = 77/510 (15%)
Query: 54 PNNFNPTVSWAAVTGTIGLI--YETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEG 110
P FNP + + T + Y L + ++ P LAE + D TY L++G
Sbjct: 11 PEGFNPQLFTSGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKG 70
Query: 111 LTWQDGKP------LTAEDVKFTFDYAKE-----HK--GLSYSPIWGW-----LKEVKVV 152
+ W D K L A+DV F+FD K HK G SY G + EVK V
Sbjct: 71 VKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKV 130
Query: 153 DNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNI----DKPESFANTENPIGSGMYKL- 207
D+ TV F+ + P + A I + + PE NPIG+G ++L
Sbjct: 131 DDNTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKL--DLNPIGTGPFQLQ 188
Query: 208 -YKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPG 266
Y+ D R D +WG K P +V+ I ++ + L K + + P
Sbjct: 189 QYQKDS-RIRYKAFDGYWGTK----PQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPA 243
Query: 267 -VPDVKAKYGIVTWYDKQPYHLP-INTAFLFLNTQKPPLNNPMFRRAIAYAINPKEI--- 321
+ +K I +P +N +L N QK PL++ R+A+ YA+N I
Sbjct: 244 DIARMKQDKSI------NLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKA 297
Query: 322 ---AARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDI 378
A S + P G Y + V+ Y TYDP KA +L + G +
Sbjct: 298 VYQGAGVSAKNLIPPTMWG------------YNDDVQDY--TYDPEKAKALLKEAGLE-- 341
Query: 379 NGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLT 438
G+ P ++ PY + MA +I VG++ ++G+Y
Sbjct: 342 --KGFSIDLWAMP----VQRPYN-PNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAK 394
Query: 439 KGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINT 498
G ++ + P +F +F + G N+ ++ + +L++
Sbjct: 395 DGEHQTVMMGWTGD-NGDPDNFFATLFSCAASEQG-----SNYSKWCYKPFEDLIQPARA 448
Query: 499 EKDENKKIQYYHELQEIFLKDLPYIPLIYN 528
D NK+++ Y + Q + P + + ++
Sbjct: 449 TDDHNKRVELYKQAQVVMHDQAPALIIAHS 478
>pir||A70141 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-3) homolog - Lyme disease spirochete
>gi|2688226|gb|AAC66706.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-3) [Borrelia burgdorferi]
Length = 541
Score = 79.2 bits (192), Expect = 1e-13
Identities = 121/530 (22%), Positives = 229/530 (42%), Gaps = 82/530 (15%)
Query: 44 LYVGGGLWSQPNNFNPTVSWAAVTGTIGL-----IYETLFIYDPLKDKLEPWLAESGKWI 98
+Y+GG P++ +P + V TIG I+ L + KL+P LA++ +
Sbjct: 41 VYIGGA----PSSLDPHL----VDETIGARILEQIFSGLLTLNTKTGKLKPGLAKNWEAS 92
Query: 99 SDN-TYRVVLKEGLTWQDGKPLTAEDVKFTF--DYAKEHKGLSYSPIWGWLKE------- 148
D TY+ L++ L W DG +TAE ++ +F KE + + +K
Sbjct: 93 KDKKTYQFYLRDNLFWSDGVEITAEGIRKSFLRILNKETGSTNVDMLKSIIKNGQEYFDG 152
Query: 149 --------VKVVDNRTVDFIFSEPHYEEWKYWL-YNIAIIPEHIWKNIDKPE-SFANTEN 198
+K +D++T++ + P + L Y +P H+ I+K + ++ + EN
Sbjct: 153 KVSDSELGIKAIDSKTLEITLTAPKPYFLELLLHYAFMPVPIHV---IEKYKGNWTSPEN 209
Query: 199 PIGSGMYKLYKT-DQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDL 257
+ SG +KL K + I +N++++ K + +VY+ ++ +M ++
Sbjct: 210 MVTSGPFKLKKRLPNEKIIFEKNERYYNAK---EVELDELVYITSDNDLTVYNMYKNNEI 266
Query: 258 DWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLF-LNTQKPPLNNPMFRRAIAYAI 316
D IP PD+ + + K Y N +L+ NT+ PL++ R A+ AI
Sbjct: 267 DAIFNSIP--PDIVNEIKL----QKDYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAI 320
Query: 317 NPKEIAARASQNQVKPA-DPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGY 375
+ + + + + P + T L +Y KK+ +DP K+ ++L GY
Sbjct: 321 DRETLTYKVLNDGTVPTREITPDLKNYNYGKKLAL----------FDPEKSKKLLADAGY 370
Query: 376 KDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWD 435
NG G+ P+ T++ T A + ++ +++ I + ++ +
Sbjct: 371 P--NGKGF-------PM-LTLKYNTNETHKKIAAFIQNQWKKILNINLMLTNENWPVLTN 420
Query: 436 DLTKGNFDMI-INNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLR 494
GNF++I + G Y P +F +F + + + YS N +L+R
Sbjct: 421 SRNTGNFEIIRVGRIGE--YLDPHTYFT-IFTRENSQLASYGYS-------NLEFDKLIR 470
Query: 495 LINTEKDENKKIQYYHELQEIFL-KDLPYIPL-IYNGAWFEASTQYWTNW 542
+ EKD K+ Q + + I + KD P P+ IY+G + + + WT W
Sbjct: 471 ESDLEKDPIKRKQLLRKAESIIIEKDFPAAPIYIYSGHYLFRNDK-WTGW 519
>emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis]
Length = 543
Score = 78.4 bits (190), Expect = 2e-13
Identities = 117/520 (22%), Positives = 212/520 (40%), Gaps = 84/520 (16%)
Query: 42 ETLYVGGGLWSQPNNFNP-----TVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGK 96
+ LYV ++P +F+P VSW + + + ++P EP +AE
Sbjct: 44 KVLYVNNE--NEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEP-----EPAMAEKWS 96
Query: 97 WISDN-TYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHK--------------GLSYSP 141
DN TY ++E W +G P+TA D ++ + + K G +Y+
Sbjct: 97 VSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNS 156
Query: 142 IWGWLKEVKVV--DNRTVDFIFSEPHYEEWKYWLY---NIAIIPEHIWKNIDKPESFANT 196
G +VKV D+RT++ P KY+L N A P + + D P+ FA +
Sbjct: 157 GKGKKDDVKVTAKDDRTLEVTLEAPQ----KYFLSVVSNPAYFPVNEKVDKDNPKWFAES 212
Query: 197 ENPIGSGMYKL--YKTDQMRFILVRNDKWWGIKYYGKPAPKY--IVYVIVYSNNLALSML 252
+ +G+G +KL +K D + ++D +W K K + + +V N M
Sbjct: 213 DTFVGNGPFKLTEWKHDDS-ITMEKSDTYWD-----KDTVKLDKVKWAMVSDRNTDYQMF 266
Query: 253 VKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRA 311
G+LD + ++P + D V D+ + F N P N R+A
Sbjct: 267 QSGELDTA--YVPAELSDQLLDQDNVNIVDQAGLY------FYRFNVNMEPFQNENIRKA 318
Query: 312 IAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDP--AKANEI 369
A A++ +EI ++N KPA P F + + + G P +KA ++
Sbjct: 319 FAMAVDQEEIVKYVTKNNEKPAHA----FVSPGFTQPDGKDFREAGGDLIKPNESKAKQL 374
Query: 370 LDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT-DWMEMARVISEQLQ-MVGIRVDPKF 427
L++ G K+ N Y + P I + Y + ++A I ++L+ +G+ V
Sbjct: 375 LEK-GMKEEN---YNKLP-------AITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLAN 423
Query: 428 PDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNE 487
++ + +D F ++F YA P + + + G W N+
Sbjct: 424 MEWNVFLEDQKALKFQFSQSSFLPD-YADP------ISFLEAFQTGNSMNRTGWA---NK 473
Query: 488 RVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
+L++ E DE + H+ +E+ + + P IP+ +
Sbjct: 474 EYDQLIKQAKNEADEKTRFSLMHQAEELLINEAPIIPVYF 513
>pdb|1DPE| Dipeptide-Binding Protein
Length = 507
Score = 78.0 bits (189), Expect = 3e-13
Identities = 120/510 (23%), Positives = 198/510 (38%), Gaps = 77/510 (15%)
Query: 54 PNNFNPTVSWAAVTGTIGLI--YETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEG 110
P FNP + + T + Y L + ++ P LAE + D TY L++G
Sbjct: 11 PEGFNPQLFISGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKG 70
Query: 111 LTWQDGKP------LTAEDVKFTFDYAKE-----HK--GLSYSPIWGW-----LKEVKVV 152
+ W D K L A+DV F+FD K HK G SY G + EVK V
Sbjct: 71 VKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKV 130
Query: 153 DNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNI----DKPESFANTENPIGSGMYKL- 207
D+ TV F+ + P + A I + + PE NPIG+G ++L
Sbjct: 131 DDNTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKL--DLNPIGTGPFQLQ 188
Query: 208 -YKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPG 266
Y+ D R D +WG K P +V+ I ++ + L K + + P
Sbjct: 189 QYQKDS-RIRYKAFDGYWGTK----PQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPA 243
Query: 267 -VPDVKAKYGIVTWYDKQPYHLP-INTAFLFLNTQKPPLNNPMFRRAIAYAINPKEI--- 321
+ +K I +P +N +L N QK PL++ R+A+ YA+N I
Sbjct: 244 DIARMKQDKSI------NLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKA 297
Query: 322 ---AARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDI 378
A S + P G Y + V+ Y TYDP KA +L + G +
Sbjct: 298 VYQGAGVSAKNLIPPTMWG------------YNDDVQDY--TYDPEKAKALLKEAGLE-- 341
Query: 379 NGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLT 438
G+ P ++ PY + MA +I VG++ ++G+Y
Sbjct: 342 --KGFSIDLWAMP----VQRPYN-PNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAK 394
Query: 439 KGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINT 498
G ++ + P +F F + G N+ ++ + +L++
Sbjct: 395 DGEHQTVMMGWTGD-NGDPDNFFATEFSCAASEQG-----SNYSKWCYKPFEDLIQPARA 448
Query: 499 EKDENKKIQYYHELQEIFLKDLPYIPLIYN 528
D NK+++ Y + Q + P + + ++
Sbjct: 449 TDDHNKRVELYKQAQVVMHDQAPALIIAHS 478
>gi|10955093 moaA [Agrobacterium tumefaciens] >gi|11277228|pir||T45540 moaA
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665716|gb|AAB88476.1| (AF242881) moaA
[Agrobacterium tumefaciens]
Length = 522
Score = 78.0 bits (189), Expect = 3e-13
Identities = 133/566 (23%), Positives = 237/566 (41%), Gaps = 73/566 (12%)
Query: 14 AAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTGTIGLI 73
AAIV G+ ++S A + +L + + +F T S + + I
Sbjct: 10 AAIVAGVLSTAVSIPSQAFAAKTELSMG---VASEDVTTLDPHFATTTSDRTL---VSYI 63
Query: 74 YETLFIYDPLK---DKLEPWLAESGKWISDN-TYRVVLKEGLTWQDGKP-LTAEDVKFTF 128
Y L + P +E LAES + +D + L+ + WQ G +TA+DV F+
Sbjct: 64 YGALVRFAPGSANPSSIEADLAESWESNADQLVWTFKLRPDVKWQGGYGNVTADDVVFSL 123
Query: 129 DYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIA---IIPEHIWK 185
D A++ K ++S + +++V+ VD +TV + L N + IIP+ +K
Sbjct: 124 DKARDPKRSAFSGDYAAIQKVEAVDAKTVRITLTR-RVPSLLALLSNFSGGFIIPKKAFK 182
Query: 186 NIDKPESFANTENPIGSGMYKLYKTDQMRFI-LVRNDKWWGIKYYGKPAPKYIVYVIVYS 244
++ + F P+G G +++ + + L N ++ + GKP I Y +
Sbjct: 183 --ERGDDFKR--RPVGFGPFQVESIQPGQSVTLTANAEY----FRGKPKLSKISYRFL-- 232
Query: 245 NNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDK---QPYHL-----PINTAFLFL 296
NN A L F G DV+ W + P ++ P L +
Sbjct: 233 NNEAARDLA---------FESGELDVEQGNQDQRWLQRLTANPENVVDTIEPAELNLLHI 283
Query: 297 NTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKK 356
N KPP N+ R+A+A+ +N +IA + +V A P+ + P + P+A
Sbjct: 284 NITKPPFNDIRVRQALAHTVNAAQIAKYRGE-RVNRAVPSVI----PSNNLGFDPDAGV- 337
Query: 357 YGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQL 416
YDPA++ ++L + G+ P+G + G +A++I Q+
Sbjct: 338 --LNYDPAQSKKLLAEAGF-----------PNGVTVTMVASQLPGLE---SLAQLIQAQV 381
Query: 417 QMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPT 476
G ++ + P W + + + I+ +G+ + ++ FY + IGKPT
Sbjct: 382 AEGGFTLNLQ-PVEHAAWHQMIRKDLSPIV-LYGAARFPIA-DYYLTQFYHSASEIGKPT 438
Query: 477 YSGNWGRYKNERVAE-LLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYN-GAWFEA 534
N + + VA+ + TE D NK+I+ + E Q++ + ++ IPL N G W
Sbjct: 439 QVVN---FSHCNVADKQIEAARTETDPNKQIELWKEAQKLIVSNVCAIPLTENLGTWARK 495
Query: 535 STQYWTNWPTEHNPYALPITWQNYWQ 560
+ W P A IT Q Y++
Sbjct: 496 NKLGWGFELKGSMPSAPLITEQTYFK 521
>gb|AAG09257.1| (AF176664) EppA precursor [EDTA-degrading bacterium BNC1]
Length = 593
Score = 78.0 bits (189), Expect = 3e-13
Identities = 116/478 (24%), Positives = 211/478 (43%), Gaps = 41/478 (8%)
Query: 4 LEVQRMKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGG-----LWSQPNNFN 58
+ + + +++A+VV ++ AQ +V GE+ N GG + N+N
Sbjct: 3 IRLHGLTTILSALVVLTAPTAVLAQDNLVTGELITTVNSGTPGKGGEVTFAVTRDITNWN 62
Query: 59 PTVSWA--AVTGTIGL-IYETLFIYDP-LKDKLEPWLAESGKWISDNTYRVV--LKEGLT 112
T + AV T+ L I + F+ P K+ L ES + S + VV ++E
Sbjct: 63 VTSALGNNAVVRTVTLPIVPSAFMVQPDFTLKMNTDLLESAELTSTDPQTVVYRIREDAV 122
Query: 113 WQDGKPLTAEDVKFTFDYAKEHKG------LSYSPIWGWLKEVKVVDN-RTVDFIFSEPH 165
W DG P+T +D F + + +++ ++ S +++ ++ + + V FSEP
Sbjct: 123 WSDGVPITGDD--FIYFWKTQNRRDCPECLINASYGHDFIETLEQDETGKVVTATFSEPF 180
Query: 166 YEEWKYWLYNIAIIPEHIW-KNIDKPESFAN---TENPIGSG-MYKLYKTDQMRFI-LVR 219
+++ + P H+ K+ D ES+ N E P SG Y + D + + LV
Sbjct: 181 LGWQGLFMF---LYPAHLAEKHGDIAESYNNFLSNEVPAWSGGPYMVESFDPGQLVTLVP 237
Query: 220 NDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTW 279
N KW+G K P + + I+ + L+ L G++D + G +
Sbjct: 238 NPKWYGEK---GPYLDKLKFRIITDSTQQLTALENGEVDV--IYPQGATQDMVEQAAGLD 292
Query: 280 YDKQPYHL--PINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTG 337
Y + + N F+ LN++ P+++ R+A+ AI+ ++ A+ + ++ G
Sbjct: 293 YLGIDFQMNPSANWYFMGLNSKAGPMSDIALRKAVLTAIDAGDLKAKTADPYLRNWPHMG 352
Query: 338 LLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLK-FTI 396
++ P + YG T D KA IL + GYK ++G + P GKP+ +
Sbjct: 353 SVMFLPNQAGYADRRGARGYG-TGDVEKAKGILSEAGYK-LSGGSLLD-PSGKPVSTLRL 409
Query: 397 EVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVY 454
P G+ +MAR+I+ + +G++ D D L GNFD+ +N F QV+
Sbjct: 410 SFPPGYPAANDMARLITGYIAPLGLKTD-LLTGPNATADYLLSGNFDLHLNYFSQQVF 466
>pir||A48650 agrocinopine utilization periplasmic binding protein accA precursor
- Agrobacterium tumefaciens plasmid pTiC58
>gi|3153177|gb|AAC17197.1| (AF010180) AccA
[Agrobacterium tumefaciens]
Length = 521
Score = 77.6 bits (188), Expect = 4e-13
Identities = 113/511 (22%), Positives = 201/511 (39%), Gaps = 93/511 (18%)
Query: 49 GLWSQPNNFNPTVSWAAVTGTI-GLIYETLFIYDPLKD-------KLEPWLAESGKWISD 100
G+ PN+ P + + V I I++TL D L P LAES + I +
Sbjct: 38 GVNGLPNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGNAIDLVPALAESWERIDE 97
Query: 101 NTYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFI 160
+ R L++ + + DG LTA+DV +TF S +WG K+ ++
Sbjct: 98 KSVRFKLRQKVMFHDGVELTADDVAYTF---------SSERLWGPEAIKKIPLGKSYSLD 148
Query: 161 FSEPHYEEWKYWL-----------------YNIAIIPEHIWKNIDKPESFANTENPIGSG 203
F EP E+ KY + + I+P+ +K + + F N P+G+G
Sbjct: 149 FDEPVVED-KYTVTLRTKTPSYLIETFVASWMSRIVPKEYYKKLGAVD-FGN--KPVGTG 204
Query: 204 MYKLYK-TDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNF 262
YK + R +L ND +WG KP I Y IV ++ L+ G+ D
Sbjct: 205 PYKFVEFVAGDRVVLEANDAYWG----PKPTASKITYQIVAEPATRVAGLISGEYDIITT 260
Query: 263 FIP-------GVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYA 315
P PD++ + ++ + +H+ F F N + + RRA+A A
Sbjct: 261 LTPDDIQLINSYPDLETRGTLI-----ENFHM-----FTF-NMNQEVFKDKKLRRALALA 309
Query: 316 IN-PKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLG 374
+N P + A + PA ++P + + + P K+ Y+ +A ++ + G
Sbjct: 310 VNRPIMVEALWKKQASIPAG-----FNFPNYGETFDP---KRKAMEYNVEEAKRLVKESG 361
Query: 375 YKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYW 434
Y DG P+ + Y + + M ++ E + +G+ V K G +
Sbjct: 362 Y------------DGTPITYHTMGNY-YANAMPALMMMIEMWKQIGVNVVMKTYAPGSFP 408
Query: 435 DDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLR 494
D + + + YAT P+ P G+ WG EL +
Sbjct: 409 PDNQTWMRNWSNGQWMTDAYAT--------IVPEFGPNGQ--VQKRWGWKAPAEFNELCQ 458
Query: 495 LINTEKDENKKIQYYHELQEIFLKDLPYIPL 525
+ + ++ Y+ +++IF ++ P + L
Sbjct: 459 KVTVLPNGKERFDAYNRMRDIFEEEAPAVIL 489
>gi|10954940 Probable accA [Agrobacterium tumefaciens]
>gi|6498293|dbj|BAA87745.1| (AB016260) Probable accA
[Agrobacterium tumefaciens]
Length = 521
Score = 77.6 bits (188), Expect = 4e-13
Identities = 111/508 (21%), Positives = 199/508 (38%), Gaps = 87/508 (17%)
Query: 49 GLWSQPNNFNPTVSWAAVTGTI-GLIYETLFIYDPLKD-------KLEPWLAESGKWISD 100
G+ PN+ P + + V I I++TL D L P LAES + I +
Sbjct: 38 GVNGLPNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGNAIDLVPALAESWERIDE 97
Query: 101 NTYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFI 160
+ R L++ + + DG LTA+DV +TF S +WG K+ ++
Sbjct: 98 KSVRFKLRQKVMFHDGVELTADDVAYTF---------SSERLWGPEAIKKIPLGKSYSLD 148
Query: 161 FSEPHYEEWKYWLYNIAIIPEHI-------WKNIDKPESFANT-------ENPIGSGMYK 206
F EP E+ KY + P ++ W + P+ + P+G+G YK
Sbjct: 149 FDEPVVED-KYTVTLRTKTPSYLIETFVASWMSRIVPKEYYRKLGAVDFGNKPVGTGPYK 207
Query: 207 LYK-TDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIP 265
+ R +L ND +WG KP I+Y IV ++ L+ G+ D P
Sbjct: 208 FVEFVAGDRVVLEANDAYWG----PKPTASKIIYQIVAEPATRVAGLISGEYDIITTLTP 263
Query: 266 -------GVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAIN- 317
PD++ + ++ + +H+ F F N + + RRA+A A+N
Sbjct: 264 DDIQLINSYPDLETRGTLI-----ENFHM-----FTF-NMNQEVFKDKKLRRALALAVNR 312
Query: 318 PKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKD 377
P + A + PA ++P + + + P K+ Y+ +A ++ + GY
Sbjct: 313 PIMVEALWKKQASIPAG-----FNFPNYGETFDP---KRKAMEYNVEEAKRLVKESGY-- 362
Query: 378 INGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDL 437
DG P+ + Y + + M ++ E + +G+ V K G + D
Sbjct: 363 ----------DGTPITYHTMGNY-YANAMPALMMMMEMWKQIGVNVVMKTYAPGSFPPDN 411
Query: 438 TKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLIN 497
+ + + YAT P+ P G+ WG EL + +
Sbjct: 412 QTWIRNWSNGQWMTDAYAT--------IVPEFGPNGQ--VQKRWGWKAPAEFNELCQKVT 461
Query: 498 TEKDENKKIQYYHELQEIFLKDLPYIPL 525
+ ++ Y+ +++IF ++ P + L
Sbjct: 462 VLPNGKERFDAYNRMRDIFEEEAPAVIL 489
>pir||S16651 dciAE protein - Bacillus subtilis
Length = 543
Score = 77.6 bits (188), Expect = 4e-13
Identities = 117/520 (22%), Positives = 212/520 (40%), Gaps = 84/520 (16%)
Query: 42 ETLYVGGGLWSQPNNFNP-----TVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGK 96
+ LYV ++P +F+P VSW + + + ++P EP +AE
Sbjct: 44 KVLYVNNE--NEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEP-----EPAMAEKWS 96
Query: 97 WISDN-TYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHK--------------GLSYSP 141
DN TY ++E W +G P+TA D ++ + + K G +Y+
Sbjct: 97 VSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNS 156
Query: 142 IWGWLKEVKVV--DNRTVDFIFSEPHYEEWKYWLY---NIAIIPEHIWKNIDKPESFANT 196
G +VKV D+RT++ P KY+L N A P + + D P+ FA +
Sbjct: 157 GKGKKDDVKVTAKDDRTLEVTLEAPQ----KYFLSVVSNPAYFPVNEKVDKDNPKWFAES 212
Query: 197 ENPIGSGMYKL--YKTDQMRFILVRNDKWWGIKYYGKPAPKY--IVYVIVYSNNLALSML 252
+ +G+G +KL +K D + ++D +W K K + + +V N M
Sbjct: 213 DTFVGNGPFKLTEWKHDDS-ITMEKSDTYWD-----KDTVKLDKVKWAMVSDRNTDYQMK 266
Query: 253 VKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRA 311
G+LD + ++P + D V D+ + F N P N R+A
Sbjct: 267 QSGELDTA--YVPAELSDQLLDQDNVNIVDQAGLY------FYRFNVNMEPFQNENIRKA 318
Query: 312 IAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDP--AKANEI 369
A A++ +EI ++N KPA P F + + + G P +KA ++
Sbjct: 319 FAMAVDQEEIVKYVTKNNEKPAHA----FVSPGFTQPDGKDFREAGGDLIKPNESKAKQL 374
Query: 370 LDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT-DWMEMARVISEQLQ-MVGIRVDPKF 427
L++ G K+ N Y + P I + Y + ++A I ++L+ +G+ V
Sbjct: 375 LEK-GMKEEN---YNKLP-------AITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLAN 423
Query: 428 PDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNE 487
++ + +D F ++F YA P + + + G W N+
Sbjct: 424 MEWNVFLEDQKALKFQFSQSSFLPD-YADP------ISFLEAFQTGNSMNRTGWA---NK 473
Query: 488 RVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
+L++ E DE + H+ +E+ + + P IP+ +
Sbjct: 474 EYDQLIKQAKNEADEKTRFSLMHQAEELLINEAPIIPVYF 513
>dbj|BAA75392.1| (AB013376) AppA [Bacillus halodurans]
Length = 531
Score = 77.3 bits (187), Expect = 5e-13
Identities = 92/424 (21%), Positives = 178/424 (41%), Gaps = 62/424 (14%)
Query: 49 GLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNTYRVVLK 108
G+ + P + +P + V+ +I +Y ++ P LAES I + T+ ++
Sbjct: 52 GVMNDPVSLDPHGANENVSNSINSNMYDRLVYLDKNLEIAPGLAESLVQIGETTWEASIR 111
Query: 109 EGLTWQDGKPLTAEDVKFTFDYAKEHK-GLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYE 167
+ + + DG L AE VK FD ++ + G + ++ + EVKV+D+ TV F P
Sbjct: 112 KDVQFHDGSQLNAEVVKANFDRIRDPEIGSPVAFLFNMITEVKVIDDYTVHFETEFP--- 168
Query: 168 EWKYWLYNIAIIPEHI----------------WKNIDKPE-SFANT-ENPIGSGMYKLY- 208
A +P H+ ++ ++K E +F T E PIG+G +K
Sbjct: 169 --------FAPLPSHLAHPGGSIISMGSIEASYEALEKGEDAFTPTNERPIGTGYFKFED 220
Query: 209 KTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVP 268
+T L R++ +WG + + + ++ + ++ L G + + P
Sbjct: 221 RTPGQSVTLSRHENYWGDELAKVDT---VTFQVIPEDLTRIAELETGGIHLTYPVNPSDA 277
Query: 269 DVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQN 328
+ + + G T+ ++ +L NT+ P ++P R+AI AI+ I
Sbjct: 278 E-RIENGPDTYLEQAN---STRMVYLGFNTEVEPFDDPKVRQAIHMAIDKDGILDGVVSG 333
Query: 329 QVKPADPTGLLIDYPVFKKIY-YPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETP 387
G+ D P+ ++ + E + K T+D A ++L + GY P
Sbjct: 334 -------IGIRADGPIAPDVFGFSEQIDK--ITFDREMAKDLLAEAGY-----------P 373
Query: 388 DGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIIN 447
DG P + + ++A +I QL +GI V ++G Y + G ++ +
Sbjct: 374 DGFPTTLLTDDD---RERQDLAEMIQYQLSEIGIDVSIDMFEFGTYLERAGNGESELFLG 430
Query: 448 NFGS 451
++G+
Sbjct: 431 SWGT 434
>gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Borrelia
burgdorferi]
Length = 541
Score = 77.3 bits (187), Expect = 5e-13
Identities = 120/530 (22%), Positives = 228/530 (42%), Gaps = 82/530 (15%)
Query: 44 LYVGGGLWSQPNNFNPTVSWAAVTGTIGL-----IYETLFIYDPLKDKLEPWLAESGKWI 98
+Y+GG P++ +P + V TIG I+ L + KL+P LA++ +
Sbjct: 41 VYIGGA----PSSLDPHL----VDETIGARILEQIFSGLLTLNTKTGKLKPGLAKNWEAS 92
Query: 99 SDN-TYRVVLKEGLTWQDGKPLTAEDVKFTF--DYAKEHKGLSYSPIWGWLKE------- 148
D TY+ L++ L W DG +TAE ++ +F KE + + +K
Sbjct: 93 KDKKTYQFYLRDNLFWSDGVEITAEGIRKSFLRILNKETGSTNVDMLKSIIKNGQEYFDG 152
Query: 149 --------VKVVDNRTVDFIFSEPHYEEWKYWL-YNIAIIPEHIWKNIDKPE-SFANTEN 198
+K +D++T++ + P + L Y +P H+ I+K + ++ + EN
Sbjct: 153 KVSDSELGIKAIDSKTLEITLTAPKPYFLELLLHYAFMPVPIHV---IEKYKGNWTSPEN 209
Query: 199 PIGSGMYKLYKT-DQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDL 257
+ G +KL K + I +N++++ K + +VY+ ++ +M ++
Sbjct: 210 MVTCGPFKLKKRLPNEKIIFEKNERYYNAK---EVELDELVYITSDNDLTVYNMYKNNEI 266
Query: 258 DWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLF-LNTQKPPLNNPMFRRAIAYAI 316
D IP PD+ + + K Y N +L+ NT+ PL++ R A+ AI
Sbjct: 267 DAIFNSIP--PDIVNEIKL----QKDYYQHKSNAIYLYSFNTKIKPLDDARVREALTLAI 320
Query: 317 NPKEIAARASQNQVKPA-DPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGY 375
+ + + + + P + T L +Y KK+ +DP K+ ++L GY
Sbjct: 321 DRETLTYKVLNDGTVPTREITPDLKNYNYGKKLAL----------FDPEKSKKLLADAGY 370
Query: 376 KDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWD 435
NG G+ P+ T++ T A + ++ +++ I + ++ +
Sbjct: 371 P--NGKGF-------PM-LTLKYNTNETHKKIAAFIQNQWKKILNINLMLTNENWPVLTN 420
Query: 436 DLTKGNFDMI-INNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLR 494
GNF++I + G Y P +F +F + + + YS N +L+R
Sbjct: 421 SRNTGNFEIIRVGRIGE--YLDPHTYFT-IFTRENSQLASYGYS-------NLEFDKLIR 470
Query: 495 LINTEKDENKKIQYYHELQEIFL-KDLPYIPL-IYNGAWFEASTQYWTNW 542
+ EKD K+ Q + + I + KD P P+ IY+G + + + WT W
Sbjct: 471 ESDLEKDPIKRKQLLRKAESIIIEKDFPAAPIYIYSGHYLFRNDK-WTGW 519
>pir||G69618 dipeptide ABC transporter (dipeptide-binding protein) - Bacillus
subtilis >gi|2632017|emb|CAA05576.1| (AJ002571) DppE
[Bacillus subtilis] >gi|2633650|emb|CAB13153.1| (Z99110)
dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus subtilis]
Length = 549
Score = 75.3 bits (182), Expect = 2e-12
Identities = 116/520 (22%), Positives = 211/520 (40%), Gaps = 84/520 (16%)
Query: 42 ETLYVGGGLWSQPNNFNP-----TVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGK 96
+ LYV ++P +F+P VSW + + + ++P EP +AE
Sbjct: 50 KVLYVNNE--NEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEP-----EPAMAEKWS 102
Query: 97 WISDN-TYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHK--------------GLSYSP 141
DN TY ++E W +G P+TA D ++ + + K G +Y+
Sbjct: 103 VSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNS 162
Query: 142 IWGWLKEVKVV--DNRTVDFIFSEPHYEEWKYWLY---NIAIIPEHIWKNIDKPESFANT 196
G +VKV D+RT++ P KY+L N A P + + D P+ FA +
Sbjct: 163 GKGKKDDVKVTAKDDRTLEVTLEAPQ----KYFLSVVSNPAYFPVNEKVDKDNPKWFAES 218
Query: 197 ENPIGSGMYKL--YKTDQMRFILVRNDKWWGIKYYGKPAPKY--IVYVIVYSNNLALSML 252
+ +G+G +KL +K D + ++D +W K K + + +V N M
Sbjct: 219 DTFVGNGPFKLTEWKHDDS-ITMEKSDTYWD-----KDTVKLDKVKWAMVSDRNTDYQMF 272
Query: 253 VKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRA 311
G+LD + ++P + D V D+ + F N P N R+A
Sbjct: 273 QSGELDTA--YVPAELSDQLLDQDNVNIVDQAGLY------FYRFNVNMEPFQNENIRKA 324
Query: 312 IAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDP--AKANEI 369
A A++ +EI ++N K A P F + + + G P +KA ++
Sbjct: 325 FAMAVDQEEIVKYVTKNNEKTAHA----FVSPGFTQPDGKDFREAGGDLIKPNESKAKQL 380
Query: 370 LDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT-DWMEMARVISEQLQ-MVGIRVDPKF 427
L++ G K+ N Y + P I + Y + ++A I ++L+ +G+ V
Sbjct: 381 LEK-GMKEEN---YNKLP-------AITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLAN 429
Query: 428 PDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNE 487
++ + +D F ++F YA P + + + G W N+
Sbjct: 430 MEWNVFLEDQKALKFQFSQSSFLPD-YADP------ISFLEAFQTGNSMNRTGWA---NK 479
Query: 488 RVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
+L++ E DE + H+ +E+ + + P IP+ +
Sbjct: 480 EYDQLIKQAKNEADEKTRFSLMHQAEELLINEAPIIPVYF 519
>sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR
Length = 543
Score = 75.3 bits (182), Expect = 2e-12
Identities = 116/520 (22%), Positives = 211/520 (40%), Gaps = 84/520 (16%)
Query: 42 ETLYVGGGLWSQPNNFNP-----TVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGK 96
+ LYV ++P +F+P VSW + + + ++P EP +AE
Sbjct: 44 KVLYVNNE--NEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEP-----EPAMAEKWS 96
Query: 97 WISDN-TYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHK--------------GLSYSP 141
DN TY ++E W +G P+TA D ++ + + K G +Y+
Sbjct: 97 VSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNS 156
Query: 142 IWGWLKEVKVV--DNRTVDFIFSEPHYEEWKYWLY---NIAIIPEHIWKNIDKPESFANT 196
G +VKV D+RT++ P KY+L N A P + + D P+ FA +
Sbjct: 157 GKGKKDDVKVTAKDDRTLEVTLEAPQ----KYFLSVVSNPAYFPVNEKVDKDNPKWFAES 212
Query: 197 ENPIGSGMYKL--YKTDQMRFILVRNDKWWGIKYYGKPAPKY--IVYVIVYSNNLALSML 252
+ +G+G +KL +K D + ++D +W K K + + +V N M
Sbjct: 213 DTFVGNGPFKLTEWKHDDS-ITMEKSDTYWD-----KDTVKLDKVKWAMVSDRNTDYQMF 266
Query: 253 VKGDLDWSNFFIPG-VPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRA 311
G+LD + ++P + D V D+ + F N P N R+A
Sbjct: 267 QSGELDTA--YVPAELSDQLLDQDNVNIVDQAGLY------FYRFNVNMEPFQNENIRKA 318
Query: 312 IAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDP--AKANEI 369
A A++ +EI ++N K A P F + + + G P +KA ++
Sbjct: 319 FAMAVDQEEIVKYVTKNNEKTAHA----FVSPGFTQPDGKDFREAGGDLIKPNESKAKQL 374
Query: 370 LDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT-DWMEMARVISEQLQ-MVGIRVDPKF 427
L++ G K+ N Y + P I + Y + ++A I ++L+ +G+ V
Sbjct: 375 LEK-GMKEEN---YNKLP-------AITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLAN 423
Query: 428 PDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNE 487
++ + +D F ++F YA P + + + G W N+
Sbjct: 424 MEWNVFLEDQKALKFQFSQSSFLPD-YADP------ISFLEAFQTGNSMNRTGWA---NK 473
Query: 488 RVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
+L++ E DE + H+ +E+ + + P IP+ +
Sbjct: 474 EYDQLIKQAKNEADEKTRFSLMHQAEELLINEAPIIPVYF 513
>emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii]
Length = 528
Score = 75.3 bits (182), Expect = 2e-12
Identities = 110/520 (21%), Positives = 219/520 (41%), Gaps = 66/520 (12%)
Query: 50 LWSQPNNFNPTVSWAAV-TGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDNT-YRVVL 107
L S+P++ +P ++ V + I ++ L DP +P LA+S D T Y L
Sbjct: 34 LGSEPSSLDPQLADDNVGSKMIDTMFRGLITGDPNTGGNKPGLAKSWDISPDGTVYTFTL 93
Query: 108 KEGLTWQDGKPLTAEDVKFTF-DYAKEHKGLSYSP-IWGWLKE---------------VK 150
+E + W DG +TAE ++ ++ + G +Y+ + +K ++
Sbjct: 94 REKIIWSDGVAITAEGIRKSYLRILNKETGSNYAEMVKSTIKNGQKYFDGQVSDSELGIR 153
Query: 151 VVDNRTVDFIFSEPHYEEWKYWLYNIAI-IPEHIWKNIDKPESFANTENPIGSGMYKL-Y 208
+D +T++ P ++ I IP HI + +S+ + EN + SG +KL
Sbjct: 154 AIDEKTLEITLESPKPYFIDMLVHQSFIPIPIHIAEKYG--QSWTSPENIVTSGPFKLKE 211
Query: 209 KTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVP 268
+ ++++ +NDK++ + + I + ++ A M +LD IP P
Sbjct: 212 RIPNEKYVVEKNDKYYN---SNQVEVQEITFYTTNDSSTAYKMYENKELDAIFGSIP--P 266
Query: 269 DVKAKYGIVTWYDKQPYHLPINTAFLF-LNTQKPPLNNPMFRRAIAYAINPKEIAARASQ 327
D+ + + Y Y +N + + NT PL+N R+A+ AI+ + + +
Sbjct: 267 DLIKDLKLRSDY----YSSAVNAIYFYAFNTYIKPLDNVKVRKALTLAIDRETLTYKVLD 322
Query: 328 NQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETP 387
N P P F Y + ++ ++P A +L + GY NG+G+
Sbjct: 323 NGTTPTRRIA-----PNFSSYSYAKNLE----LFNPEIAKTLLAEAGYP--NGNGF---- 367
Query: 388 DGKPLKFTIEVPYGWTD-WMEMARVISEQ-LQMVGIRVDPKFPDYGKYWDDLTKGNFDMI 445
P+ +++ Y ++ ++ I Q +++ I V+ + ++ Y + + GN+++
Sbjct: 368 ---PI---LKLKYNTSEAHKKICEFIQNQWKKILNIDVELENEEWTTYLNTRSNGNYEIA 421
Query: 446 INNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKK 505
+ YA P + + + G +S + Y + EL++ + E D K+
Sbjct: 422 RAGWIGD-YADP------LTFLSIFTQGYTQFSSH--NYSSPEYNELIKKSDLELDPIKR 472
Query: 506 IQYYHELQEIFL-KDLPYIPLIYNGAWFEASTQYWTNWPT 544
+ +EI + KD P P+ G + WT W T
Sbjct: 473 QDILRKAEEIIIEKDFPIAPIYIYGNSYLFRNDKWTGWNT 512
>dbj|BAB13784.1| (AB038238) NikA [Vibrio parahaemolyticus]
Length = 546
Score = 75.3 bits (182), Expect = 2e-12
Identities = 131/527 (24%), Positives = 230/527 (42%), Gaps = 64/527 (12%)
Query: 9 MKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQP-NNFNPTVSWAAVT 67
MKKL ++ L + + S Y + TL+V G +P F+ + W
Sbjct: 1 MKKLPVLLIAAL-LCAFSTSSYA-------SQPNTLFVALG--DEPVKGFDSVLGWGKYG 50
Query: 68 GTIGLIYETLFIYDPLKD-KLEPWLAESGKWISDN-TYRVVLKEGLTWQDGKPLTAEDVK 125
LI TL Y+ KD +L+ LA S + D ++ + ++ + + D LTAEDV
Sbjct: 51 NP--LIQSTLLKYN--KDFELQGDLAISWQLSEDKLSWSIKIRSDILFSDLSSLTAEDVA 106
Query: 126 FTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWK 185
FTF AK + LS + LK+V V+ + F +P +++ +I I+P+H +
Sbjct: 107 FTFLQAK--RTLSAHDLSN-LKDVVVLSPTHLRFDLKQPDITFIDHFV-SIGIVPKHAYS 162
Query: 186 NIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSN 245
+++A + PIGSG Y+ + + + + +R + YY K P + VIV+ +
Sbjct: 163 -----KNYA--QYPIGSGPYQFVQWKKGQSVTLRVNP----NYYAK-KPAFNELVIVFGS 210
Query: 246 NLALSMLVK-GDLDWSNF---FIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKP 301
+ L K G L + F+ +P ++K + D + P+++ N +
Sbjct: 211 ESSRFALFKTGQLHLTTLPQKFVSSLPK-ESKLWSINSVDNRGIVWPMHST-KEGNKESA 268
Query: 302 PLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKI-YYPEAVKKYGFT 360
++ R+A+ AI+ I + PA Y V + + P ++
Sbjct: 269 ISSDIAIRQAVDLAIDRSVIIQQLLNGYAHPA--------YSVADGLPWGPMTPSEH--H 318
Query: 361 YDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVG 420
YD +A + L G+ D N DG RE + + T+ G + E+A IS+ L+ +G
Sbjct: 319 YDVKRAQQTLTSAGWIDSNNDGIRER-NSINAEMTLYYKAGDSVREELAITISQMLKPIG 377
Query: 421 IRVDPKFPDYGKYWDDLTKG-NFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSG 479
I++D G WD + K + + ++ FGS +F+ D A G Y
Sbjct: 378 IKLD----IVGADWDTIAKHMHNNPVLMGFGSH----SANEIRSLFHSDYA--GVDFY-- 425
Query: 480 NWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLI 526
N G Y+N+ V L+ + + + E Q++ KDLP+ L+
Sbjct: 426 NSGLYQNKEVDHLIDQAIHASSWQESLPLWQESQKLIEKDLPWTWLV 472
>pir||F81253 probable peptide ABC-transport system periplasmic peptide-binding
protein Cj1584c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969001|emb|CAB73572.1|
(AL139079) putative peptide ABC-transport system
periplasmic peptide-binding protein [Campylobacter
jejuni]
Length = 511
Score = 74.5 bits (180), Expect = 3e-12
Identities = 102/462 (22%), Positives = 199/462 (42%), Gaps = 36/462 (7%)
Query: 70 IGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLTWQDGKPLTAEDVKFTF 128
I L++ L +D L+P LA+S D Y + L++ + W DG +A+DVKF+
Sbjct: 47 INLVFSGLTRFDE-NMSLKPDLAKSWDISKDGLVYDIFLRDDVLWHDGVKFSADDVKFSI 105
Query: 129 DYAKEHKGLSYSPI-WGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNI 187
+ K K S + + +K V++++ V +P Y + L +I ++P+H+ +N
Sbjct: 106 EAFKNPKNNSSIYVNFEDIKSVEILNPSHVKITLFKP-YPAFLDAL-SIGMLPKHLLENE 163
Query: 188 DKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNL 247
+ S N +NPIG+G YK K + ++ + ++ + Y K ++ ++ ++
Sbjct: 164 NLNTSSFN-QNPIGTGPYKFVKWKKGEYVEFKANEHF---YLDKVKTPRLIIKHIFDPSI 219
Query: 248 ALSMLVKGDLDWSNFFIPGVPDVK--AKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNN 305
A + L G +D + + + K +GI+ L N FL K
Sbjct: 220 ASAELKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNLDNEFLKDLK----- 274
Query: 306 PMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAK 365
R+A+ YA++ + I + + ++P+ + + K Y YDP K
Sbjct: 275 --VRQALNYAVDKESIVKNLLHDY-------AFVANHPLERSWANSKNFKIY--KYDPKK 323
Query: 366 ANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDP 425
A ++L G+K N DG E DGK L+F I + +A ++ + + +G+
Sbjct: 324 AEDLLVSAGFKK-NKDGNFE-KDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKV 381
Query: 426 KFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWGRYK 485
G + D +K D + +GS + + + + N+G Y
Sbjct: 382 VAKPAGSF--DYSK--VDSFLIGWGSPLDP---DFHTFRVFESSQDSALNDEGWNFGHYH 434
Query: 486 NERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
+++V L+ + ++ +YY + + ++ P+I L Y
Sbjct: 435 DKKVDIALQKARNTSNLEERKKYYKDFIDALYENPPFIFLAY 476
>pir||H83083 probable binding protein component of ABC transporter PA4497
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950736|gb|AAG07885.1|AE004863_5 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 532
Score = 74.1 bits (179), Expect = 5e-12
Identities = 116/513 (22%), Positives = 206/513 (39%), Gaps = 86/513 (16%)
Query: 54 PNNFNPTVSWAAVT--GTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEG 110
P F+P + T + +Y L + P + P LAES +D Y L++G
Sbjct: 37 PEGFDPARYTSGYTFDASAHPLYNALAAFAPGSATVIPALAESWDVSADGLVYTFRLRQG 96
Query: 111 LTWQDG------KPLTAEDVKFTFDYA--KEHKGLSYSP----------IWGWLKEVKVV 152
+ + + A+DV F+F +H SP + ++ ++ +
Sbjct: 97 VKFHSTDYFKPTREFDADDVLFSFQRMLDPQHPAHDLSPSGYPYADAMQLRDIIERIEKI 156
Query: 153 DNRTVDFIFSEPHYEEWKYWLYNIA------IIPEHIWKNIDKPESFANTENPIGSG--M 204
D V F+ P +L ++A + E+ + I + + PIG+G +
Sbjct: 157 DEHQVRFVLKHPEAP----FLADLAMPFGSILSAEYAGQLIARGKGDELNSKPIGTGPFV 212
Query: 205 YKLYKTD-QMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFF 263
+ Y+ D Q+R+ N +W GKPA ++V I N+ + L + + +
Sbjct: 213 FTRYRKDAQVRY--AANPDYWK----GKPAIDHLVLAITLDPNVRVQRLRRNECQIA--L 264
Query: 264 IPGVPDVKAKYGIVTWYDKQPYHLP---INTAFLFLNTQKPPLNNPMFRRAIAYAINPKE 320
P DV A D Q L + T+ +NT+ P ++P RRAIA N
Sbjct: 265 TPKPEDVAALR-----QDPQLTVLEEAAMITSHAAINTRHEPFDDPRVRRAIAMGFNKSS 319
Query: 321 IAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDING 380
+Q +PA + YP + Y ++++ + YDP +A +L + G
Sbjct: 320 YLKIVFGDQARPA-----IGPYPPML-LGYDDSIRDW--PYDPERAKALLKEAGV----- 366
Query: 381 DGYRETPDGKPLKFTIEVPYG-WTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTK 439
TPD PL I G + +A++I L +GIRV+ + ++G+
Sbjct: 367 -----TPD-TPLNLYISTGSGPGGNPARVAQLIQSDLAAIGIRVNIRQFEWGEMVKRTKA 420
Query: 440 GNFDMIINNFGSQVYATPWQWFNWVFYPD---VAPIGKPTYSG--NWGRYKNERVAELLR 494
G DM++ + W PD +G + N R+ ++ E +R
Sbjct: 421 GEHDMML-----------YSWIGDNGDPDNFLTHNLGCASVESGENRARWCDKGFDEAIR 469
Query: 495 LINTEKDENKKIQYYHELQEIFLKDLPYIPLIY 527
DE++++ Y E Q IF + +P++PL +
Sbjct: 470 KARMSNDESQRVALYKEAQRIFHEQMPWLPLAH 502
>gi|10954707 hypothetical ABC-transporter gene~similar to PH0807 [Agrobacterium
rhizogenes] >gi|8918707|dbj|BAA97772.1| (AB039932)
hypothetical ABC-transporter gene~similar to PH0807 gene
[Agrobacterium rhizogenes] >gi|10567371|dbj|BAB16180.1|
(AP002086) hypothetical ABC-transporter gene~similar to
PH0807 [Agrobacterium rhizogenes]
Length = 521
Score = 73.4 bits (177), Expect = 8e-12
Identities = 87/360 (24%), Positives = 147/360 (40%), Gaps = 45/360 (12%)
Query: 85 DKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTFDYA-KEHKGLSYSPIW 143
D+L LA K I ++T L+EG+T+ DGKP +AEDVK T++YA + + ++ P
Sbjct: 85 DELVMELATEMKLIDEHTLEFKLREGVTFHDGKPFSAEDVKATYEYASRPDRPAAWYP-- 142
Query: 144 GWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNIDKPESFANTENPIGSG 203
EV+VV + + Y +W + + +P K++ P++ + P G+G
Sbjct: 143 -GPCEVEVVSDYVARVKTDKAGYPASLFWFLS-SFLPIMSAKDVADPKTL--SARPNGTG 198
Query: 204 MYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFF 263
+K K D +L D + Y GKP + + V L+ G+ D
Sbjct: 199 GFKFVKQDGNTTVLEAFDNF----YLGKPTIPGLHFSFVGDATTRTLALLNGEADLIERL 254
Query: 264 IPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEI-- 321
+ K G + + + +L+ KPP N+ RRA+ +AI+ I
Sbjct: 255 EAEQVETIEKTGGFQLHKA----ISVENKYLWFRCSKPPFNDWRLRRAVCHAIDRSVIDD 310
Query: 322 ----AARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKD 377
+ AS V P +D P + K +DP + ++L + G+
Sbjct: 311 ILGVSGHASNCYVSPVKFG--YVDIPNYPK-------------FDPEQCQKLLAEAGFP- 354
Query: 378 INGDGYRETPDGKPLKFTIEVPYGWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDL 437
G+G E L++ V + + E A I+ LQ G V + + D L
Sbjct: 355 -KGEGLPE------LEYITSVGF-YPKTKEYAEAITAMLQEQGFPVKLNVMEVAAWGDAL 406
>gb|AAG20588.1| (AE005129) dipeptide ABC transporter ATP-binding; DppD
[Halobacterium sp. NRC-1]
Length = 566
Score = 72.6 bits (175), Expect = 1e-11
Identities = 121/536 (22%), Positives = 205/536 (37%), Gaps = 101/536 (18%)
Query: 41 NETLYVGGGLWSQPNNFNPTVSWAA-VTGTIGLIYETLFIYDP-LKDKLEPWLAESGKWI 98
+E +Y G P N++P + + V+ I++TL + P +L LA+ W
Sbjct: 51 DELVYSRG---DHPQNYDPQQTTSGEVSKVTNQIFDTLIQFKPGTSGELTSGLADD--WT 105
Query: 99 SDNTYRVV-LKEGLTWQDGKPLTAEDVKFT--------FDY--AKEHKGLSYSPIWGWLK 147
D T + L+E T+ G LTA DVK T +DY + G + W+
Sbjct: 106 LDGTTATLTLREDATFHSGADLTATDVKATIRRFIDDEYDYYLGSDRSGYASITFGDWVD 165
Query: 148 EVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNIDKPESF---ANTE---NPIG 201
V+ T D+ + +++ +L N+AI I D+ ES A E +P+G
Sbjct: 166 SVEA----TGDYEVTIDLTQQYAPFLRNLAIFAAAILSR-DQIESLGADAQPELGTDPVG 220
Query: 202 SGMYKLYKTDQ--MRFILVRNDKWWGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGD--- 256
+G ++ + D R L D +WG G P+ +++ SN L+ GD
Sbjct: 221 TGPFEFDQLDNETQRVRLTAFDDYWG----GAPSVSAVIFKTTGSNQTRAQGLINGDAHI 276
Query: 257 ---LDWSNFFIPGVPD---VKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRR 310
LD + D V+ K GI Y F + +KP +P+ +R
Sbjct: 277 TDNLDAQSIQKVSSADSASVRQKNGINVGY------------MAFNHDRKPAFRDPLVKR 324
Query: 311 AIAYAINPKEI------AARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPA 364
AI+ AIN EI AS NQ P D G D + +DP
Sbjct: 325 AISMAINRDEIVDSIYQGFAASANQPLPPDVLGHNDDID--------------SYPHDPQ 370
Query: 365 KANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT-DWMEMARVISEQLQMVGIRV 423
+A +L G D++ + T P G+ + ++ A + L +G+ V
Sbjct: 371 QAESMLADAGVTDLSFE-----------LATFSNPRGYNPNPIQTATQVKSDLAEIGVDV 419
Query: 424 D-PKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGNWG 482
+ +F + Y + G D ++ + + A P + + +P P
Sbjct: 420 EINQFSQFSAYLEYTYDGRHDACLSGWYTD-NADPDNFMYVLLHPGTDIDDVPADQNYIA 478
Query: 483 RYKNERVAELLRLINTE-----------KDENKKIQYYHELQEIFLKDLPYIPLIY 527
V+ + ++T+ D+ + QYYH+ +I P++ L Y
Sbjct: 479 WEDKNNVSNVSAWVDTDYMEFVDKGQRTYDDAARQQYYHQASQIAHDQAPWVYLDY 534
>dbj|BAB05793.1| (AP001514) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 486
Score = 71.8 bits (173), Expect = 2e-11
Identities = 95/403 (23%), Positives = 175/403 (42%), Gaps = 46/403 (11%)
Query: 71 GLIYETLFIYDPLKDKLEPWLAESGKWISDN--TYRVVLKEGLTWQDGKPLTAEDVKFTF 128
G++YE+L + ++ ++P LAES + ISD+ Y L+E + + DG+P A+ VK
Sbjct: 14 GMVYESLV--ENTEEGIQPLLAESWE-ISDDGKVYTFHLREDVEFHDGEPFNADAVKKNI 70
Query: 129 DYAKEHKGL-SYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWKNI 187
+ + + L S+ + + E V+D TV+ + SE +Y L +++ +++ +
Sbjct: 71 EAVQRNVDLHSWIKLSQKIVECNVIDEYTVELVLSEAYYPT----LVELSMTRPYVFLS- 125
Query: 188 DKPESFANTENP------IGSGMYKLYKTDQMRFILVR-NDKWWGIKYYGKPAPKYIVYV 240
P F N E G+G Y L + + + N+ +WG G+P+ K I
Sbjct: 126 --PNDFTNEETKDGVNGYHGTGPYILTEHVKDNYATFEANENYWG----GEPSIKKITAK 179
Query: 241 IVYSNNLALSMLVKGDLDWSNFFIPGVP--DVKAKYGIVTWYDKQPYHL----PINTAFL 294
++ + L KG++++ G DV+A ++ D Y L +NT +
Sbjct: 180 VLPAGETTFLALQKGEVNFIFTDDRGTDSIDVEAMNQLI---DTGEYQLVRSEAMNTKII 236
Query: 295 FLNTQ--KPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYPVFKKIYYPE 352
N+ + P++ R AI + I+ + IA N + T + D I+Y
Sbjct: 237 AANSSNAESPVSETAVREAIWHTIDRETIA-----NDILAGTET--VADTLFSHNIHYAN 289
Query: 353 A-VKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWTDWMEMARV 411
+K G YD A IL+Q G+ + + T DG PL + + A
Sbjct: 290 VELKDRG--YDIETAEAILEQAGW-TLENERNARTKDGIPLAMNLYYDSNSSSQKTQAEF 346
Query: 412 ISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVY 454
I L+ +GI+++ + + G++D++ N Y
Sbjct: 347 IQASLREIGIQLEIIGEESTSIANRRATGDYDLLFNQTWGLAY 389
>pir||G83388 probable binding protein component of ABC transporter PA2058
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9948066|gb|AAG05446.1|AE004632_5 (AE004632) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 602
Score = 71.4 bits (172), Expect = 3e-11
Identities = 103/426 (24%), Positives = 173/426 (40%), Gaps = 68/426 (15%)
Query: 72 LIYETLFIYDPLKDKLE-PWLAESGKWISDNTY-RVVLKEGLTWQDGKPLTAEDVKFTFD 129
LIYETL + E +LA + DN++ R + + DG +TAEDVKF+FD
Sbjct: 82 LIYETLGFQSLDEPFTEYGYLARYIEKAPDNSWVRFHIDPRARFSDGVAVTAEDVKFSFD 141
Query: 130 YAKEHKGLSYSPIW-GWLKEVK---VVDNRTVDFIFSEPHYEEWKYWLYNIAIIPEHIWK 185
E SP W + KEV+ V D + F F E L + ++P H W+
Sbjct: 142 SLVEQG----SPFWRAYYKEVREPVVEDRLRIRFDFRHAGNRELPLVLAQLYVLPRHWWQ 197
Query: 186 NIDKPESFANTENPIGSGMYKLYKTDQMRFILV-RNDKWW------GIKYYGKPAPKYIV 238
D S + + P+GSG Y+L K + R + RN WW G Y ++
Sbjct: 198 GRDFNRS--SMQPPLGSGPYRLEKAEAGRSVSYRRNPDWWARDLPVGRGLYNFERIRFDY 255
Query: 239 YVIVYSNNLALSMLVKGDLD---------WSN-FFIPGVPDVKAKYGIVTWYDKQPYHLP 288
Y + +AL G D WS+ + P + D + + + PY P
Sbjct: 256 Y---RDSGVALQAFKAGQADINVETSVKAWSSGYDSPALRDGRLR------QESFPYPYP 306
Query: 289 INTAFLFLNTQKPPLNNPMFRRAIAYA---------------------INPKEIAARA-- 325
+ L N ++P + R+A++ + E+AAR
Sbjct: 307 ASLQGLVFNLRRPLFEDRRVRQALSLLFDFEWTNRQLFGGRYKRLRSYFDNSEMAARGLP 366
Query: 326 SQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDP-AKANEILDQLGYKDINGDGYR 384
+++ +P I VF + Y P G ++ +A +L + G+ + DG
Sbjct: 367 GADELALLEPLRGQIPEEVFGQAYAPPVNDGSGDIHERLVQAYRLLGEAGWHAV--DGRL 424
Query: 385 ETPDGKPLKFTIEVPYGWTDWMEMARV-ISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFD 443
G+PL+F + + +E A + L +GI + + D +Y + + ++D
Sbjct: 425 LDTAGRPLRFDLLLQ---GKSLERALLPFQRNLARIGIDMRLRQVDASQYIERIRARDYD 481
Query: 444 MIINNF 449
MI+++F
Sbjct: 482 MIVSSF 487
>sp|P06109|XP55_STRLI XP55 PROTEIN PRECURSOR >gi|80816|pir||S07386 55K protein precursor
- Streptomyces lividans >gi|47220|emb|CAA68337.1|
(Y00142) xp55 (AA 1 - 542) [Streptomyces lividans]
Length = 542
Score = 70.6 bits (170), Expect = 5e-11
Identities = 114/480 (23%), Positives = 191/480 (39%), Gaps = 44/480 (9%)
Query: 49 GLWSQPNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN--TYRVV 106
G+ S+P+ +P + + + I++ L D + L+P LA + ++D+ T
Sbjct: 55 GVASEPDTLSPLLGYGKDGNS--KIFDGLLARDTDLE-LKPALAAALPKVTDDGRTITFT 111
Query: 107 LKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHY 166
L+EG+ + DG+PLTA DV E + ++E + TV F P+
Sbjct: 112 LREGVNFSDGEPLTAGDVYTYRTVLDEKTNNTARSELDAVRERSARADGTVVFTLKYPYA 171
Query: 167 EEWKYWLYNIAIIPEHIWKNIDKPESFANTENPIGSGMYKL---YKTDQMRFILVRNDKW 223
+ + I+PEH+ D NTE P+G+G Y L K +++ F N +
Sbjct: 172 PFAARTV--LPIVPEHVAGKQDPNTGDFNTE-PVGTGPYVLTGWSKGEKLGF--RANPHY 226
Query: 224 WGIKYYGKPAPKYIVYVIVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQ 283
WG KPA K + +N+ + L GDLD + P + K Y +
Sbjct: 227 WG----DKPAVKSFTMAVTADDNVRATRLRSGDLDGA-VLPPNLAATFEKDDGRRTYRAR 281
Query: 284 PYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKEIAARASQNQVKPADPTGLLIDYP 343
Y T L + + RRA+ A++ + + + +PA L +D P
Sbjct: 282 SYDFRAVT----LPSAGQVTGDRAIRRALDAAVDRQAMVDKILDGAGRPAYGP-LPVDDP 336
Query: 344 VFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPYGWT 403
+Y +++ D A A ILD+ G+K G G DG+ FT+ P G
Sbjct: 337 -----WYERGIER---PRDLAAAGRILDEAGWKP--GSGGIRARDGQRASFTLYYPSGDK 386
Query: 404 DWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDL-TKGNFDMIINNFGSQVYATPWQWFN 462
+ A + + GI V + G W+ + + D ++ + GS P
Sbjct: 387 VRQDHALAYASDAKKAGIEVKVE----GATWEVIEPRMKTDAVLADLGS--VGDPDFGLY 440
Query: 463 WVFYPDVAPIGKPTYSGNWGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPY 522
+ + +A G N Y N V E L +D + Y E+Q+ + D Y
Sbjct: 441 TLLHSTLAGDG----FNNMAHYANPAVDEALDAGRRSQDPKVRAAAYREIQKALVADPGY 496
>gi|11499356 dipeptide ABC transporter, dipeptide-binding protein (dppA)
[Archaeoglobus fulgidus] >gi|7483283|pir||F69470
dipeptide ABC transporter, dipeptide-binding protein
(dppA) homolog - Archaeoglobus fulgidus
>gi|2648784|gb|AAB89484.1| (AE000981) dipeptide ABC
transporter, dipeptide-binding protein (dppA)
[Archaeoglobus fulgidus]
Length = 520
Score = 70.2 bits (169), Expect = 7e-11
Identities = 90/327 (27%), Positives = 141/327 (42%), Gaps = 40/327 (12%)
Query: 54 PNNFNPTVSWAAVTGTIGLIYETLFIYDPLKDKLEPWLAESGKWISDN-TYRVVLKEGLT 112
P N +W + +G L Y P +LEP+LAES + D Y L++ L
Sbjct: 213 PANAYDFYTWEIMNNVMG----GLVRYKPGTTELEPYLAESWEVSEDGLVYTFHLRQDLK 268
Query: 113 WQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFIFSEPHYEEWKYW 172
+ DG P A+DV + +G + ++++V+ VD+ TV F +P Y+
Sbjct: 269 FADGTPCKAQDVVRSIKRVMTIQGDPSWLVTHFVEDVEAVDDYTVKFTLKKPA----AYF 324
Query: 173 LYNIAIIPEHIWKNIDKPESFANTENPIGSGMYKL--YKTDQMRFILVRNDKWWGIKYYG 230
+ +A P K + + G G YK+ +K DQ IL N ++G
Sbjct: 325 VSLLATPPYFPVHPAYKADEIDPDQTAGGVGPYKIVEWKRDQ-ELILEANPNFFG----E 379
Query: 231 KPAPKYIVYVIVYSNNLALSMLV-KGDLD--WSNFFIPGVPDVKAKYGIVTWYDKQPYHL 287
+P K IV V Y + L + + KG++D W + +KAK G+ Q
Sbjct: 380 QPMTKRIV-VKFYKDATTLRLAIEKGEVDIAWRTLTPIDIESLKAKEGL------QVIEA 432
Query: 288 PIN-TAFLFLNTQKP---PLNNPMFRRAIAYAINPKEIAARASQNQVKP---ADPTGLLI 340
P +L LN + P N R+AIA AI+ ++IA R + V+P P G+
Sbjct: 433 PGGFIRYLVLNANENTDYPTKNIYVRKAIAAAIDREDIAQRVYRGTVEPLYSLIPIGMWS 492
Query: 341 DYPVFKKIY-------YPEAVKKYGFT 360
VFK +Y E +KK G++
Sbjct: 493 HEDVFKDMYGDGNIELAKEYLKKAGYS 519
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.440
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282842532
Number of Sequences: 2977
Number of extensions: 13875682
Number of successful extensions: 141188
Number of sequences better than 1.0e-10: 81
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 140753
Number of HSP's gapped (non-prelim): 121
length of query: 644
length of database: 189,106,746
effective HSP length: 52
effective length of query: 592
effective length of database: 157,985,422
effective search space: 93527369824
effective search space used: 93527369824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)