BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0628 (appB-2) DE:OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE
PROTEIN APPB
(334 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75142 oligopeptide transport system permease protein appb ... 683 0.0
pir||D72282 oligopeptide ABC transporter, permease protein - The... 471 e-132
pir||H75068 dipeptide abc transporter, permease protein (dppb) P... 439 e-122
pir||B71163 probable oligopeptide transport system permease prot... 430 e-120
pir||H72428 oligopeptide ABC transporter, permease protein - The... 309 3e-83
emb|CAC12449.1| (AL445067) dipeptide transport system, permease ... 242 4e-63
pir||H72420 oligopeptide ABC transporter, permease protein - The... 237 2e-61
pir||B72393 oligopeptide ABC transporter, permease protein - The... 230 2e-59
pir||G82301 peptide ABC transporter, permease protein VC0619 [im... 219 4e-56
pir||C71130 probable oligopeptide transport permease protein APP... 214 1e-54
gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus] 214 1e-54
pir||C72284 oligopeptide ABC transporter, permease protein - The... 206 4e-52
emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methan... 194 1e-48
pir||D75202 dipeptide abc transporter, dipeptide-binding protein... 189 3e-47
gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus sol... 181 9e-45
gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus sol... 181 1e-44
gi|11499357 dipeptide ABC transporter, permease protein (dppB) [... 173 2e-42
pir||C83082 probable permease of ABC transporter PA4503 [importe... 168 9e-41
gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T... 167 2e-40
pir||A72289 oligopeptide ABC transporter, permease protein - The... 166 4e-40
gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-... 164 1e-39
sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 163 2e-39
pir||B72367 oligopeptide ABC transporter, permease protein - The... 161 1e-38
dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) ... 161 1e-38
pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|29... 160 2e-38
sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 159 3e-38
emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter... 155 7e-37
pir||F75454 peptide ABC transporter, permease protein - Deinococ... 155 9e-37
pir||B38447 oligopeptide permease oppB homolog - Bacillus subtil... 153 2e-36
sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 153 2e-36
pir||F72451 probable peptide transport system permease protein A... 153 3e-36
pir||C64557 dipeptide ABC transporter, permease protein - Helico... 152 8e-36
pir||G71951 dipeptide transport system permease protein - Helico... 151 1e-35
dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permeas... 151 1e-35
sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 150 3e-35
gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis] 150 3e-35
dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [O... 148 7e-35
sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 147 2e-34
emb|CAC05748.1| (AL391751) putative peptide transport system int... 145 6e-34
emb|CAC11408.1| (AL445063) dipeptide transport system permease p... 145 8e-34
emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related prote... 143 3e-33
dbj|BAB04287.1| (AP001509) nickel transport system (permease) [B... 141 9e-33
sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 141 1e-32
sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 141 1e-32
pir||F72215 oligopeptide ABC transporter, permease protein - The... 141 1e-32
gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T... 139 3e-32
pir||S47696 nickel transport system permease protein nikB - Esch... 139 4e-32
dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Ba... 139 4e-32
pir||B75381 peptide ABC transporter, permease protein - Deinococ... 139 6e-32
dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permeas... 139 6e-32
pir||B75118 dipeptide abc transporter, permease protein (dppb) P... 138 8e-32
pir||B72617 probable dipeptide transport system permease protein... 138 1e-31
sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 137 2e-31
pir||C82242 oligopeptide ABC transporter, permease protein VC109... 136 4e-31
pir||C71841 probable peptide ABC transporter, ATP-binding protei... 134 1e-30
gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis] 134 1e-30
pir||D71014 probable dipeptide transport system permease protein... 134 1e-30
gb|AAC67218.1| (U78968) transmembrane transport protein DppB [St... 134 1e-30
sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 132 4e-30
sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 132 4e-30
pir||C64676 oligopeptide ABC transporter, permease protein - Hel... 132 4e-30
sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 131 1e-29
sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 131 1e-29
gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [... 131 2e-29
pir||B82356 peptide ABC transporter, permease protein VC0172 [im... 130 2e-29
gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis] 129 4e-29
pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC... 129 6e-29
sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 128 1e-28
sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 127 1e-28
pir||B70789 probable peptidetransport system permease - Mycobact... 126 3e-28
pir||C70141 oligopeptide ABC transporter, permease protein (oppB... 126 4e-28
pir||A75027 oligopeptide transport permease protein appb PAB1194... 126 4e-28
dbj|BAA14776.1| (D90763) Oligopeptide transport system permease ... 125 1e-27
gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola] 124 2e-27
dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permeas... 123 4e-27
sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 122 5e-27
gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; Dp... 122 6e-27
sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 122 6e-27
pir||E72300 oligopeptide ABC transporter, permease protein - The... 121 1e-26
pir||F83419 probable permease of ABC transporter PA1809 [importe... 120 2e-26
gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|649829... 120 2e-26
pir||T03433 probable transport protein accD - Agrobacterium tume... 119 5e-26
pir||A71212 probable oligopeptide transport system permease prot... 119 5e-26
pir||F72720 probable oligopeptide transport system permease prot... 118 7e-26
pir||F75529 probable peptide ABC transporter, permease protein -... 118 7e-26
sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 118 9e-26
pir||D75573 peptide ABC transporter, permease protein - Deinococ... 118 9e-26
pir||C71545 probable oligopeptide permease - Chlamydia trachomat... 117 2e-25
pir||E72107 peptide ABC transporter, permease protein CP0568 [im... 116 4e-25
sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 116 5e-25
gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S7... 115 1e-24
pir||F81699 peptide ABC transporter, permease protein TC0472 [im... 114 1e-24
gb|AAC18097.1| (AF058302) membrane protein of putative ABC trans... 113 2e-24
sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 112 5e-24
pir||T34758 oligopeptide transport system integral membrane prot... 112 7e-24
pir||F82377 ABC transporter, permease protein VCA1099 [imported]... 112 7e-24
gb|AAC69838.1| (AF076683) oligopeptide transporter putative memb... 111 1e-23
gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1] 111 1e-23
gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; Dp... 111 2e-23
gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonel... 111 2e-23
gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB... 110 2e-23
dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permeas... 110 3e-23
gi|10954708 hypothetical ABC-transporter gene~similar to agaB ge... 109 4e-23
gb|AAC69843.1| (AF076684) oligopeptide transporter putative memb... 109 6e-23
gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB... 108 8e-23
pir||E72424 oligopeptide ABC transporter, permease protein - The... 107 2e-22
pir||F72371 oligopeptide ABC transporter, permease protein - The... 107 2e-22
pir||T35939 probable transport permease protein - Streptomyces c... 104 2e-21
dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus] 101 1e-20
pir||A72537 probable oligopeptide transport permease protein APE... 100 2e-20
pir||S77118 oligopeptide transport system permease protein appB ... 100 4e-20
pir||C82170 peptide ABC transporter, permease protein VC1681 [im... 98 2e-19
gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halob... 94 2e-18
emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.] 92 1e-17
pir||E81253 probable peptide ABC-transport system permease prote... 87 4e-16
sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 82 8e-15
pir||T45279 oligopeptide transport membrane protein bldKC [impor... 82 1e-14
sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 81 2e-14
emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyo... 80 3e-14
sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 77 3e-13
pir||D71510 probable oligopeptide permease - Chlamydia trachomat... 74 3e-12
pir||D72059 peptide ABC transporter, permease protein, probable ... 72 8e-12
pir||G81668 peptide ABC transporter, permease protein, probable ... 72 8e-12
dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila ... 72 8e-12
>pir||A75142 oligopeptide transport system permease protein appb PAB0628 -
Pyrococcus abyssi (strain Orsay)
>gi|5458361|emb|CAB49850.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT SYSTEM PERMEASE PROTEIN APPB [Pyrococcus
abyssi]
Length = 334
Score = 683 bits (1743), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF
Sbjct: 1 MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
Query: 61 VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW
Sbjct: 61 VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
Query: 121 FVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180
FVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI
Sbjct: 121 FVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180
Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240
IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI
Sbjct: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240
Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF
Sbjct: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
LVIILTVLVANFVIDLLYAIIDPRVRISYTEEGA
Sbjct: 301 LVIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
>pir||D72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981775|gb|AAD36297.1|AE001778_18 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 329
Score = 471 bits (1200), Expect = e-132
Identities = 213/328 (64%), Positives = 273/328 (82%)
Query: 5 IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
+++YL +K +IYILTFFFAVTID+ IPR MPG+PI L+SRFA LPE+ K L SYF QAF
Sbjct: 1 MRKYLTKKILIYILTFFFAVTIDWAIPRFMPGNPINFLISRFAGLPESVKVLQSYFTQAF 60
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
GLDKPLWEQYI+FWKA+ GDLGISIY YP+PVA+++ ALPY L +L PA++ S+ +GN
Sbjct: 61 GLDKPLWEQYINFWKALFRGDLGISIYMYPQPVAKVIARALPYSLIVLLPAVLLSFAIGN 120
Query: 125 WLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
GA + K+LDN+ +P+FY L ASPYFWF ILL+++F + FP++GAYS+GI PS
Sbjct: 121 RFGAFVARKKRLDNFALPVFYTLTASPYFWFGILLAWIFGVVIPLFPLAGAYSFGITPSF 180
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKH 244
SW+FI D+LHHW LPF SLF+V LGGWAIGMRNMIIYE+EA+Y RYLE+LG S++++ K+
Sbjct: 181 SWDFILDFLHHWVLPFGSLFLVMLGGWAIGMRNMIIYELEANYSRYLEALGSSQRLIRKY 240
Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
A++NA+LPQ+TGLA+QLG +VAG +T ++VFSYPGIGY+LMQGI+NQDYFLIQG FL II
Sbjct: 241 AYRNAILPQITGLAIQLGTVVAGALTTEIVFSYPGIGYILMQGILNQDYFLIQGCFLFII 300
Query: 305 LTVLVANFVIDLLYAIIDPRVRISYTEE 332
L VL+ANF++D+ Y IIDPR+R SY+ E
Sbjct: 301 LGVLLANFLVDIFYVIIDPRIRKSYSGE 328
>pir||H75068 dipeptide abc transporter, permease protein (dppb) PAB1344 -
Pyrococcus abyssi (strain Orsay)
>gi|5458958|emb|CAB50445.1| (AJ248287) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 330
Score = 439 bits (1116), Expect = e-122
Identities = 200/329 (60%), Positives = 262/329 (78%), Gaps = 2/329 (0%)
Query: 4 GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLL-SRFATLPEATKYLHSYFVQ 62
G K+YL RK +IY LTF FAVT+++++PR+MPGDPI +++ S P+ + L ++
Sbjct: 2 GFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYED 61
Query: 63 AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
+GL+KPL+ Q+I+FWK++L GDLG SI Y V+ I+K ALPYD+A+LFPA+V SW +
Sbjct: 62 LYGLNKPLYVQFINFWKSLLRGDLGYSILYRDS-VSNIIKHALPYDIAILFPAIVLSWII 120
Query: 123 GNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
GNWLGALAGKNKK D YLMP+FYFL + PYFWFA++L Y KL FP GAYS ++P
Sbjct: 121 GNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
S S FI D+L HW LPFLSLF+V +G WAIGMRNMIIYE+EADY+RYLE+LG SEK+L
Sbjct: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT 240
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
KHA++NA+LPQVTGLALQLGL+VAG + ++VF+YPG+G +LM ++QDYFL+QG FL+
Sbjct: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300
Query: 303 IILTVLVANFVIDLLYAIIDPRVRISYTE 331
+I+ VLVANF+ID++YA+IDPRVR+SY E
Sbjct: 301 VIIAVLVANFIIDIVYALIDPRVRVSYEE 329
>pir||B71163 probable oligopeptide transport system permease protein AppB -
Pyrococcus horikoshii >gi|3256908|dbj|BAA29591.1|
(AP000002) 330aa long hypothetical oligopeptide
transport system permease protein AppB [Pyrococcus
horikoshii]
Length = 330
Score = 430 bits (1095), Expect = e-120
Identities = 195/329 (59%), Positives = 261/329 (79%), Gaps = 2/329 (0%)
Query: 4 GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLL-SRFATLPEATKYLHSYFVQ 62
G YL RK ++Y+LTF FAVT+++++PR+MPGDPI +++ S P+ + L ++ Q
Sbjct: 2 GFGDYLKRKIIVYVLTFIFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLRFYEQ 61
Query: 63 AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
+GL+KPL+ Q+++FW A+ GDLG SI Y PV+ +LK ALPYD+A+L PA+V SW +
Sbjct: 62 LYGLNKPLYVQFVNFWVALFKGDLGYSILYRA-PVSRLLKNALPYDIAILLPAIVLSWLI 120
Query: 123 GNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
GNWLGA AGKNKK D Y+MP+FYFL + PYFWFA+LL YL K G P GAYS +IP
Sbjct: 121 GNWLGAFAGKNKKYDKYMMPLFYFLASMPYFWFAMLLVYLVGVKAGILPYQGAYSPDLIP 180
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
+ S +F+ D+L HW +PFLSLF+V +G WAIGMRNMIIYE+EADY+RYLE+LG SEK++
Sbjct: 181 TFSLKFVVDFLKHWIMPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLMT 240
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
KHA+KNA+LPQ+TGLALQLGL+VAG + ++VF+YPG+G +LM+ M+QDYFL+QG FL+
Sbjct: 241 KHAYKNAILPQITGLALQLGLMVAGAIATEIVFNYPGVGVLLMKAAMSQDYFLLQGGFLM 300
Query: 303 IILTVLVANFVIDLLYAIIDPRVRISYTE 331
I+++VLVANFVID++YA+IDPRVR SY E
Sbjct: 301 IVISVLVANFVIDIVYALIDPRVRASYLE 329
>pir||H72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980514|gb|AAD35124.1|AE001690_18 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 338
Score = 309 bits (783), Expect = 3e-83
Identities = 141/327 (43%), Positives = 217/327 (66%), Gaps = 6/327 (1%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATL----PEATKYLHSYFVQ 62
+YLLR+ + ++T+ A TI FI+PR +PG+P++ +LS + + PEA + ++
Sbjct: 8 KYLLRRFIFLLVTYIVATTIVFILPRAIPGNPLSQILSGLSRVAQANPEAIRAAERTLME 67
Query: 63 AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
FGL KP + QY F L GDLG SI +YP+ V +++ +P+ L LL PA + +W +
Sbjct: 68 EFGLGKPWYVQYFEFITKALRGDLGTSITFYPRKVIDLIIPVIPWTLILLLPATIVAWIL 127
Query: 123 GNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180
GN LGALA +N +D ++ + PY+W ++ +LF KLGW P+ GAYS G
Sbjct: 128 GNSLGALAAYKRNTWIDKGVLTTSLIVSQIPYYWLGMIFIFLFGVKLGWLPVQGAYSQGT 187
Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240
IP+LSW F D L H+ +PF S+ + +GGWAIGMR M+IYE+ +DY + E LG+ +K
Sbjct: 188 IPNLSWSFFVDVLKHYIMPFASIVVSAMGGWAIGMRLMVIYELGSDYAMFSEYLGMKDKR 247
Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
+ K+ F+N++LPQ+TGLAL LG ++ G + ++VF+YPG GY+L + + DY LIQG F
Sbjct: 248 IFKYVFRNSLLPQITGLALSLGGVLGGALITEIVFNYPGTGYLLFRALTTLDYPLIQGIF 307
Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
+++I ++ +ANF++D LYA+IDPR+R+
Sbjct: 308 VILIASIYLANFIVDFLYALIDPRIRL 334
>emb|CAC12449.1| (AL445067) dipeptide transport system, permease protein (dppB)
related protein [Thermoplasma acidophilum]
Length = 340
Score = 242 bits (612), Expect = 4e-63
Identities = 121/325 (37%), Positives = 198/325 (60%), Gaps = 5/325 (1%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEA---TKYLHSYFVQA 63
+Y+++K ++ F A+T++F++PR+MPG+P V+ + + YLH V+
Sbjct: 12 KYIIKKISLFFGIFIGAITVNFLLPRMMPGNPAVVVYNEILKAGGSGVNPAYLHQLEVEY 71
Query: 64 FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
+ P+++QY + + HG+LG+SI +YP+PV+ IL EALP+ L L+ ++ S+F+G
Sbjct: 72 GISNAPIYDQYFQYLWNLFHGNLGLSIAFYPEPVSAILAEALPWTLFLVISSITISFFLG 131
Query: 124 NWLGALAGKNKKLDNYL-MPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
N LG AG N+ L + +F AS P F A ++ +F+ FP+ GAY +
Sbjct: 132 NRLGRYAGINRNTSKDLAIDVFAMFMASFPAFVLAFIVLDIFSVYGHIFPLGGAYGVNVN 191
Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL 241
+ FI ++H LP L++ + LGGW +GMRN II + +D+I Y E+LG + +
Sbjct: 192 MGFNVPFIISVIYHAVLPVLTIILTSLGGWVLGMRNNIIPNLNSDFINYSENLGFKDYQI 251
Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
A+KNA+LP +TG A+ +GL V+G + + +FSYPG+G ++ I + DY L+QG FL
Sbjct: 252 KSIAYKNALLPNLTGFAMSIGLSVSGVIIEESIFSYPGVGLYMITAINSLDYPLMQGIFL 311
Query: 302 VIILTVLVANFVIDLLYAIIDPRVR 326
++++ VL N V+DLLY +DPR+R
Sbjct: 312 MVVIAVLAGNLVVDLLYGFLDPRIR 336
>pir||H72420 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980560|gb|AAD35166.1|AE001694_2 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 237 bits (598), Expect = 2e-61
Identities = 130/333 (39%), Positives = 188/333 (56%), Gaps = 8/333 (2%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATL-----PEATKYL 56
MS ++RYLL + + Y L F +TI F +PR +P DPI + R T PE L
Sbjct: 1 MSFVRRYLLPRLITYFLVVFVGLTIVFFLPRFLPSDPIQAYIDRLITQGGNLNPEYFNKL 60
Query: 57 HSYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPAL 116
+ +GL LW QY++FWK +L GD G S + +P PV ++++++LP+ LLF
Sbjct: 61 VETIKELYGLQGSLWNQYVNFWKRLLKGDFGPSYFQFPTPVMKLIRQSLPWTAWLLFVTT 120
Query: 117 VASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISG 174
V SW +GN LG LAG +KK L I ++ PY+ A+ L L + FPI G
Sbjct: 121 VISWIIGNILGGLAGYFSDKKWVKILDGIAMVIRPMPYYILALGLLILLAYIFPIFPIGG 180
Query: 175 AYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESL 234
++ G+ + SWE + L H LP LSL ++ + W M+ ++ DY++Y +
Sbjct: 181 GFAIGMKFTFSWENLLILLKHAFLPALSLVLIGVFSWFQAMKLVVQSVKTEDYVKYAKMG 240
Query: 235 GVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDY 293
GV E+ I+ ++ +NAMLPQ+TGLAL LG + G + ++VFSYPGIG +L I DY
Sbjct: 241 GVEERRIVRRYVIRNAMLPQITGLALSLGQIFGGALITEIVFSYPGIGSLLYNAIFTGDY 300
Query: 294 FLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
L+ G + IL V + VIDLLY + DPRVR
Sbjct: 301 NLLMGISTLSILLVTTSILVIDLLYPLFDPRVR 333
>pir||B72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980801|gb|AAD35389.1|AE001712_2 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 230 bits (580), Expect = 2e-59
Identities = 122/332 (36%), Positives = 184/332 (54%), Gaps = 7/332 (2%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFA----TLPEATKYLH 57
M IK YL+ + + Y+ +T+ F+IPR+ P DPI +L+ T PEA +
Sbjct: 1 MKFIKSYLIPRLIQYVYMVVIGITLVFLIPRLSPVDPIEQILNTRLRIQNTTPEAVIKMR 60
Query: 58 SYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALV 117
+ +GL LWEQY++ WK +L GD G S+ YYP V +++ +LP+ + LL +
Sbjct: 61 EVMEELYGLKGTLWEQYVNLWKRLLKGDFGPSMVYYPASVISLIRNSLPWTIGLLTLTTL 120
Query: 118 ASWFVGNWLGALAGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
SW +G +GA+ G K+ L I + PY+ FA+ L LF + FP+ G
Sbjct: 121 ISWVLGLVIGAILGYYKESFGSKILTGILMAINPIPYYIFALTLLLLFCYVFPIFPLGGG 180
Query: 176 YSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLG 235
+S G SLSW FI D + H TLP LSL ++ GW +G + ++ E DY+ Y +G
Sbjct: 181 FSVGQKISLSWSFILDVIKHGTLPALSLIILGFAGWGLGTKILVQNLREEDYVVYARMMG 240
Query: 236 V-SEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYF 294
+ + KIL + +NAMLPQVTGL L LG + G + +++F+YPGIG + + DY
Sbjct: 241 LRNSKILFSYVLRNAMLPQVTGLGLSLGGIFGGAMMTEILFTYPGIGTLAYNAVRANDYN 300
Query: 295 LIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
++ I+ V A ++DLLY +IDPR+R
Sbjct: 301 VMIAISFFSIIAVATALLILDLLYPLIDPRIR 332
>pir||G82301 peptide ABC transporter, permease protein VC0619 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655052|gb|AAF93785.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 328
Score = 219 bits (552), Expect = 4e-56
Identities = 114/323 (35%), Positives = 186/323 (57%), Gaps = 5/323 (1%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y LR+ Y A T++FIIPR MPGDP+ ++ + AT + + + ++
Sbjct: 3 YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAH-ATAQVTPERIEAMKQLLGFVE 61
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
P + QY+++ K++L +LG SI +YP V E+L A + L L A++ S+ +G+ LG
Sbjct: 62 GPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLG 121
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS-L 184
A + + D ++ P +QA P A+L + F L WFP AY+ G P
Sbjct: 122 IFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWT 181
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
SW FIKD +H LP +VQ+GG+ + MRN +I + DYI + G+SE +++
Sbjct: 182 SWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFN 241
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
+A +NA+LP VT L++ LG+ + G + ++++F+YPG+G VL I +DY ++QG L++
Sbjct: 242 YAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIM 301
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
L +L N + D+LY ++DPR+R
Sbjct: 302 TLFMLFFNLLADMLYVVLDPRLR 324
>pir||C71130 probable oligopeptide transport permease protein APPB - Pyrococcus
horikoshii >gi|3257218|dbj|BAA29901.1| (AP000003) 323aa
long hypothetical oligopeptide transport permease
protein APPB [Pyrococcus horikoshii]
Length = 323
Score = 214 bits (540), Expect = 1e-54
Identities = 118/328 (35%), Positives = 195/328 (58%), Gaps = 9/328 (2%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
M +K Y++++++ IL FF + ++FII PG+P ++ ++T +Y+ +
Sbjct: 1 MGSMKVYIIKRSIQLILVIFFVLFLNFIIINAAPGNPAQLMAGEYST----EEYIKAIEA 56
Query: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
+ +GLDKP+ +++ + K +LHGDLG S Y Y +PV++++ E + L L P+++ ++
Sbjct: 57 R-WGLDKPIHIRFLIYMKNLLHGDLGYS-YRYLEPVSKLIMERIGKTLLLTVPSIILAFL 114
Query: 122 VGNWLGALAGKNK--KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYG 179
VG WL +A + KLD L I + P FW +LL +F KLG PI+G +
Sbjct: 115 VGVWLARIAARKPGGKLDVSLSIITLIFYSMPSFWLGLLLILVFGVKLGILPIAGMTNIR 174
Query: 180 IIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK 239
+ S SW+ D L H LP +L ++Q+ + R II + DY++ +++G S+K
Sbjct: 175 AVYSSSWDKAFDILKHMVLPVTTLMLIQIPAYFRITRGAIIEQSTEDYVKTFDAVGFSKK 234
Query: 240 -ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
I K+ F+NA+LP VT L L+LG +G V++VF +PG+G +L+ +DY LI G
Sbjct: 235 HIFNKYIFRNAILPPVTILGLRLGYAFSGAALVEIVFGWPGMGRLLLDAAFARDYPLIMG 294
Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVR 326
+LVI ++V VA F+ DLLYA++DPR+R
Sbjct: 295 IYLVIAVSVAVAIFITDLLYAVLDPRIR 322
>gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 342
Score = 214 bits (539), Expect = 1e-54
Identities = 115/336 (34%), Positives = 196/336 (58%), Gaps = 12/336 (3%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIA-VLLSRF----ATLPEATKYLHSYFVQ 62
+L+++ + YI+ +F +TIDFI+PR++PG +A ++ SR + + + VQ
Sbjct: 5 FLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQILVQ 64
Query: 63 AFGL---DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVAS 119
GL +PL+ QY ++ K ++ + G+S+ +P V+ I+ EA P+ ++ PA+VAS
Sbjct: 65 QLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAIVAS 124
Query: 120 WFVGNWLGALAGKNK-KLDNY-LMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS 177
+F+GN LG +A ++ K+ +Y ++ + FL P F +L + L FP G Y+
Sbjct: 125 FFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTGGQYN 184
Query: 178 --YGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLG 235
+ P++S FI ++H LP L+L + L GW +GMRN +I ++ DY+ Y +G
Sbjct: 185 TFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYYRLMG 244
Query: 236 VSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFL 295
VSEK++ A++ A+LP T ++ LG V G V ++ +F+Y G+GY Q I DY L
Sbjct: 245 VSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGLDYPL 304
Query: 296 IQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTE 331
+ G F +++ ++++NFV D++Y IIDPR TE
Sbjct: 305 LSGIFFMLVTAMVLSNFVADIIYTIIDPRTSQEETE 340
>pir||C72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981749|gb|AAD36273.1|AE001776_9 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 206 bits (518), Expect = 4e-52
Identities = 109/333 (32%), Positives = 185/333 (54%), Gaps = 9/333 (2%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATL-----PEATKYL 56
M+ IK YL+ + + Y + F ++ F +PR++P DP+ L ++ T PE + +
Sbjct: 1 MNFIKGYLIPRLLQYFIVTFLGLSAIFFLPRLLPTDPVKQQLQQYQTFGVYIPPEQQEEM 60
Query: 57 HSYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPAL 116
Q +GL+ LWEQY+ FWK +L GD G S +P V++++ +ALP+ + LL
Sbjct: 61 MRTLRQLYGLEGTLWEQYLDFWKRLLTGDFGPSFSRFPVSVSKVISQALPWTVGLLSLTT 120
Query: 117 VASWFVGNWLGALAGK-NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
+ SW + +G + G K+ L + ++ PY+ A++ LF + FP+SG
Sbjct: 121 ILSWIIAVIVGGIVGYYRKRWMEALDVVVMIIRPIPYYVMALICLILFAYVFPIFPLSGG 180
Query: 176 YSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEA-DYIRYLESL 234
G S E I + H TLP L+L +V + W +I+ +++ D++ Y ++
Sbjct: 181 IGIGQKLSFDLETILSIVKHGTLPALTLMIVGIA-WQFQSMKLIVQIVKSEDHVWYAKTA 239
Query: 235 GVSEKILMK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDY 293
GV+EK++++ H +NAMLP +T L LQ G + +G + ++VF+YPGIG++L IM DY
Sbjct: 240 GVTEKMIVRNHVIRNAMLPMITQLGLQFGGIFSGALITEMVFAYPGIGWILYDAIMKADY 299
Query: 294 FLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
LI G + + + + ++DL+Y + DPRVR
Sbjct: 300 NLIMGVMCISTIAITTSILLLDLIYPLFDPRVR 332
>emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 315
Score = 194 bits (489), Expect = 1e-48
Identities = 116/314 (36%), Positives = 174/314 (54%), Gaps = 15/314 (4%)
Query: 16 YILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYI 75
Y+ + + I+F +PR+MPGDP+ L+ + E GLD+PL+EQ+
Sbjct: 11 YLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVM---EELRAELGLDRPLYEQFA 67
Query: 76 SFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KN 133
SF +LH DLG S Y+ PVAEIL + + + L + +++ F G+ LGALAG
Sbjct: 68 SFVSDILHLDLGYS-YHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPE 126
Query: 134 KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKDYL 193
K+ F +P ++ A+L Y+F+F+LG FP G Y I S+ L
Sbjct: 127 KRTSRVTGLAFIVFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPEIGSI--------L 178
Query: 194 HHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLP 252
HH LP + + + MR +I E + Y Y + G+++ +L +H KN+ LP
Sbjct: 179 HHLFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLP 238
Query: 253 QVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANF 312
+T LAL G L +G + ++++FS G+G ++ IM +DY L+QGAFLVI LT L+AN
Sbjct: 239 IITLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANM 298
Query: 313 VIDLLYAIIDPRVR 326
+ DLLYA+IDPRVR
Sbjct: 299 LADLLYALIDPRVR 312
>pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 -
Pyrococcus abyssi (strain Orsay)
>gi|5457576|emb|CAB49067.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 310
Score = 189 bits (476), Expect = 3e-47
Identities = 114/325 (35%), Positives = 171/325 (52%), Gaps = 24/325 (7%)
Query: 6 KRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
K ++++K + ++ F F I ++PGDP LL FAT + K+ H G
Sbjct: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQ-----LG 57
Query: 66 LDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
LD+PL+ QYI + VL GD G S+ PV+E++ L Y L L A + +W G
Sbjct: 58 LDRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116
Query: 126 LGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
G LA K+ D +M + F + PYFW ILL +F KLG PISG +
Sbjct: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW----- 171
Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM- 242
H LP L+L + Q+ A R ++ +E DYI + G+ E++++
Sbjct: 172 ----------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVY 221
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
KHA +NA++P VT + LQ+ L G V + VF +PG+G +L+ I +DY ++Q L+
Sbjct: 222 KHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLI 281
Query: 303 IILTVLVANFVIDLLYAIIDPRVRI 327
I + ++ANF+ D+ Y IIDPRVRI
Sbjct: 282 IGVLTVIANFLADITYTIIDPRVRI 306
>gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 322
Score = 181 bits (455), Expect = 9e-45
Identities = 105/324 (32%), Positives = 179/324 (54%), Gaps = 15/324 (4%)
Query: 19 TFFFAVTIDFIIPRIMPGDPIAVLLSRF-------ATLPEATKYLH-SYFVQAFGLDKPL 70
TFF +T++FI+PR+MPG +AV++S AT + L S AFGL
Sbjct: 3 TFFVVITVNFILPRLMPGSALAVVISLIEGQNGVAATAGSSAIALEVSQLEAAFGLTPAP 62
Query: 71 WE-QYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGAL 129
W QY + + + +LG SI YYP PV I+ LP+ L L+ + ++F+G++LG++
Sbjct: 63 WYVQYAHYIQGIFTLNLGASITYYPTPVLSIILSGLPWTLFLVVVGAIIAFFLGSYLGSI 122
Query: 130 AGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWE 187
AG N++ D ++ I L A P F + L + + G F IS P+
Sbjct: 123 AGFNRRSRKDLVILIITSILAALPSFVILMYLEMWLSVQHGIFLISFPSKINTSPNSIMA 182
Query: 188 FIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKHAFK 247
+ Y TLP ++L L G+ +GMRN +++ I +Y+ Y E LG+ + K +K
Sbjct: 183 LSRFY----TLPIIALMFTSLSGFVLGMRNNMLHTIRDNYVTYAEILGLDHNRIRKMVYK 238
Query: 248 NAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTV 307
N++LP +T A+ LGL ++ ++TV+ + + PG+G+ + ++D L+QG FL I + +
Sbjct: 239 NSLLPNITAFAIILGLAISQSLTVEGLLTTPGVGFFFGLALTSKDLPLLQGIFLFIAIML 298
Query: 308 LVANFVIDLLYAIIDPRVRISYTE 331
+++ +++ +Y I+DPR R+S +E
Sbjct: 299 ILSIAIVEAIYTILDPRARVSESE 322
>gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 333
Score = 181 bits (454), Expect = 1e-44
Identities = 109/329 (33%), Positives = 170/329 (51%), Gaps = 10/329 (3%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLS-----RFATLPEATKYLHSYFV 61
++L+R+ I+ F + I + + P P ++ FA PE L Y
Sbjct: 4 KWLIRRLASVIIAIFVTIVISWALLEFSPYSPANYIMQFINPQDFAQKPELYASLIDYLN 63
Query: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
PL W LHG+LG SI PVAE++ ALP+ L ++ +++ S+F
Sbjct: 64 TLRPHGNPLINAVNYIWNT-LHGNLGFSIISNV-PVAELIAVALPWTLFIVVTSILISFF 121
Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYG 179
+G LG G + K D+ L++ P + +A+LL Y+ F FP GAYS
Sbjct: 122 LGIRLGQKLGYLRGTKTDSVATVSLSILRSVPIYIYAVLLIYILAFIYHIFPTGGAYSIH 181
Query: 180 IIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK 239
+ P + FI L+H LP L+L +V L GW + MR IY + D++ + E GV +
Sbjct: 182 VTPGFNLPFIASVLYHAFLPILTLTIVNLVGWILQMRANTIYVLGEDFVNFAEISGVKKD 241
Query: 240 IL-MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
I+ K+ KNA+LP T L + +G +G+V V+ FSYPG+G +L+ I + DY G
Sbjct: 242 IIEKKYIGKNAILPLYTSLIISIGFSFSGSVFVEQTFSYPGVGNLLINSITSNDYPTEMG 301
Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVRI 327
F++II+ V+V N + DL Y+ +DPR ++
Sbjct: 302 VFIIIIVAVIVGNLIADLTYSFLDPRAKV 330
>gi|11499357 dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus
fulgidus] >gi|7449122|pir||G69470 dipeptide ABC
transporter, permease protein (dppB) homolog -
Archaeoglobus fulgidus >gi|2648780|gb|AAB89482.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppB) [Archaeoglobus fulgidus]
Length = 354
Score = 173 bits (435), Expect = 2e-42
Identities = 111/342 (32%), Positives = 178/342 (51%), Gaps = 24/342 (7%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
MS + Y++ + ++ I T +TI F+I RI+PGDPI ++ + K H
Sbjct: 19 MSSLPAYIITRFLMVIPTVLILLTIVFLILRIIPGDPITAMVGQKVPEEVLEKLRHEA-- 76
Query: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
GLDKP EQYI + K V GDLG S+ + +PV + + P L L + S
Sbjct: 77 ---GLDKPYHEQYIEYLKGVFTGDLGKSMIWGKRPVIAEIMDHFPATLELTIFGFILSVL 133
Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQASPYF--WFAILLSYLFTFKLGWFPISGAYS 177
+G G++A + K+D+ + Y + A F WF +LL LF L PI G +
Sbjct: 134 IGVATGSIAAFRRGSKVDSGMR--IYSIVAYTLFIPWFGMLLQMLFGVYLKVLPIGGRIT 191
Query: 178 YGIIP-------------SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
G P +L++ + D L H LP ++L +V G + +RN +I +
Sbjct: 192 PGNTPETITGLYVLDSILTLNFNSLIDALAHLALPAITLGIVLSGAYTRLLRNNLIDVLS 251
Query: 225 ADYIRYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVL 284
D+I+ + GV + ++ HA KNA +P VT + LQ +L+AG V + FS+PG+G L
Sbjct: 252 QDFIKAYRARGVRNRKVVFHAMKNAFIPVVTLMGLQFAILLAGAVLTESTFSWPGMGTFL 311
Query: 285 MQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
++ I +DY +QGA + + V + + V+D++YA++DPR+R
Sbjct: 312 IERIEYRDYTSVQGAIVFYAVFVALISLVVDVIYALLDPRIR 353
>pir||C83082 probable permease of ABC transporter PA4503 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950743|gb|AAG07891.1|AE004864_3 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 336
Score = 168 bits (421), Expect = 9e-41
Identities = 103/335 (30%), Positives = 176/335 (51%), Gaps = 21/335 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
++ R+ + I TFF + F + R++PGDP+ V++ P+ +H+ + GLD
Sbjct: 4 FIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQ----MHAEALHRLGLD 59
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
KPL++QY+ + + G+LG SI + +PV L L F A++ + +G G
Sbjct: 60 KPLYQQYLDYVGNLAQGNLGKSIRTH-EPVWNEFLTLFSATLELSFAAMLFAGTLGLLAG 118
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--YGIIPS 183
+A + D+ +M I + P FW+ +LL LF+ LGW P+S Y + P
Sbjct: 119 VVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWTPVSDRIGVLYEVEPK 178
Query: 184 LSWEFIK-----------DYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
+ I D + H LP + L + L A R+ ++ + DY+R
Sbjct: 179 TGFMLIDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTAR 238
Query: 233 SLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
+ G+S +++ HA +NA++P +T L LQ+G L+AG V + +FS+PGIG L+ I +
Sbjct: 239 AKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISAR 298
Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
DY ++Q L++ V++ NFV+D+LY + +PR+R
Sbjct: 299 DYPVVQNGILLVATLVILVNFVVDILYGLANPRIR 333
>gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T45537 moaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665713|gb|AAB88473.1| (AF242881) moaB
[Agrobacterium tumefaciens]
Length = 313
Score = 167 bits (419), Expect = 2e-40
Identities = 101/322 (31%), Positives = 172/322 (53%), Gaps = 17/322 (5%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
YL ++ ++T +T+ F++ R++PGDP+ ++L A+ PE+ L Q GLD
Sbjct: 4 YLAKRLCFAVVTLLSVLTLIFLMVRVLPGDPVLMILGDQAS-PESVAALR----QRLGLD 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+P+ QY+ F + + GDLG S+ +PV E + LPY L L F +LV +G G
Sbjct: 59 QPIGLQYVQFLGSAVKGDLGNSMVT-GRPVTEEVMSVLPYTLELTFASLVVGLILGVPTG 117
Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
A K KL +Y++ + + S P F AI+L +F L WFP+ A + I +
Sbjct: 118 VWAAVKRSKLPDYILRLISLIGLSLPGFVSAIVLLIVFAINLRWFPVISAGTGDGIVNRV 177
Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM-KH 244
W+ TLP +SL ++ + R+ ++ + D++R + G +++ +H
Sbjct: 178 WQM--------TLPVISLALIMMAYITRVTRSAMLEVLNQDFVRTARAKGARPSVVIWRH 229
Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
A N ++P T + L LG+L+ +V ++VFS PG+G +++ + +DY L+QG +V
Sbjct: 230 ALGNCLIPISTVVGLYLGILIGNSVLTEIVFSRPGLGKLILTALSQRDYTLLQGMVVVYT 289
Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
L V++ N DL Y + DPRV+
Sbjct: 290 LIVVIVNLATDLTYGLFDPRVQ 311
>pir||A72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981697|gb|AAD36225.1|AE001772_4 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 166 bits (416), Expect = 4e-40
Identities = 102/338 (30%), Positives = 173/338 (51%), Gaps = 22/338 (6%)
Query: 5 IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
+K Y++ + ++ F + + F++ RI+PGDP+ +L A + H
Sbjct: 3 LKNYVITRILLAAPMIFILLALIFLVLRIIPGDPVLAILGGKAPKEVIEQKRHE-----L 57
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
GLDKP+ Q+ + +L GDLG S +PV E +KE P L L A + + +G
Sbjct: 58 GLDKPIIVQFFDYIGDLLKGDLGKSTLT-GRPVWEEIKERFPATLELTLFAFIVAVLIGI 116
Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFP----------- 171
+ G+ A ++ +D + A P FWF +++ Y+F L W P
Sbjct: 117 FWGSFAAYKRDSGVDIGARMFSMVMYAVPVFWFGLMMQYIFGVILRWLPVGGRLSPTMNL 176
Query: 172 --ISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
I+G YS + + +WE +KD H LP L+L +V + +RN + + D+++
Sbjct: 177 KVITGIYSIDALFTGNWEALKDVFEHLLLPGLTLGLVISSVFVRMVRNNTVLTLAQDFVK 236
Query: 230 YLESLGVSEKI-LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
+ G+ E++ L ++A KNA++P T + LQ LL+ G V + FS+PG+G L+ I
Sbjct: 237 AARARGLKERVVLFRYALKNALVPIFTMMGLQFALLLGGAVLTETTFSWPGLGSYLVMKI 296
Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
+D+ IQG + L V+V + ++D++ A+IDPRVR
Sbjct: 297 RYRDFPAIQGTVVFFALIVVVISILVDVINALIDPRVR 334
>gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-3) [Sulfolobus
solfataricus]
Length = 343
Score = 164 bits (412), Expect = 1e-39
Identities = 103/344 (29%), Positives = 178/344 (50%), Gaps = 20/344 (5%)
Query: 1 MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
M I +++R+ + +T + + FI+ I+ +P+A L+R T P AT
Sbjct: 1 MSINIVFFIIRRIINAFITLILLIILVFIMIHIIAPNPLA--LARLYTGPHATYTELEQV 58
Query: 61 VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
+ +GLD+PL+ Q I++ VLHG+ GI Y PV ++ + LP L L+ PA + S
Sbjct: 59 AKQYGLDQPLYIQIINYIINVLHGNFGIDPTY-KVPVITLIGKYLPRTLELVIPATILSV 117
Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
+G + GA+A +NK LD + ++ ASP F A++L + + L P +G +
Sbjct: 118 VIGLFTGAIAASNRNKPLDYLVRGVYLVTWASPPFLIAVILQLVIAYYLRLLPPTGTVNP 177
Query: 179 GIIPSLS--------------WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
+ P S W + +HH LP +++ +V G R ++ +E
Sbjct: 178 VLTPPKSITPFPLLNAMLAGDWPYFSSLVHHMVLPVIAIALVSFGIVTRIARASMLDYME 237
Query: 225 ADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYV 283
+D+ + G+S + ++ +NA +P VT +AL G VAG V ++ +F Y G+GY
Sbjct: 238 SDFAKLSLMKGLSRRRVVYGVVLRNASIPLVTLIALLFGYSVAGAVVIEDIFQYHGMGYF 297
Query: 284 LMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
+ Q I + DY I G +++ + +++AN + D+LY ++DPRVRI
Sbjct: 298 ITQAIESLDYTSILGTTIIVGIAIIIANLIADILYGVLDPRVRI 341
>sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB
>gi|2126889|pir||I40546 oligopeptide ABC transporter
(permease) appB - Bacillus subtilis
>gi|677946|gb|AAA62359.1| (U20909) AppB [Bacillus
subtilis] >gi|2633493|emb|CAB12996.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 317
Score = 163 bits (409), Expect = 2e-39
Identities = 95/323 (29%), Positives = 167/323 (51%), Gaps = 16/323 (4%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y++R+T++ I + F+I + PGDP+ +++ P+ ++ F++ +GL+
Sbjct: 4 YIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMD-----PKISQADREQFIEKYGLN 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
P + QY+ + ++ GD G SI PV+E++ LP L L+ + + + + G
Sbjct: 59 DPQYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPFG 118
Query: 128 ALAGKN--KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
L+ K K+D + + A P FWF ++L + + LGWFP G + +L+
Sbjct: 119 VLSAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGG------VETLN 172
Query: 186 WEF-IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
EF I D +HH LP L + G R+ ++ + DYIR + G E ++L K
Sbjct: 173 TEFNIFDRIHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFKENRVLFK 232
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
H +NA+LP +T L + + G+V V+ +F++PG+G + + + I A VI
Sbjct: 233 HGLRNALLPVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVI 292
Query: 304 -ILTVLVANFVIDLLYAIIDPRV 325
+ V+V N + D+LYAI+DPR+
Sbjct: 293 SAVLVVVGNLIADILYAIVDPRI 315
>pir||B72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981045|gb|AAD35617.1|AE001728_18 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 321
Score = 161 bits (403), Expect = 1e-38
Identities = 101/326 (30%), Positives = 169/326 (50%), Gaps = 15/326 (4%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+Y+ R+ +I I I FII PGD L + P ++ + GL
Sbjct: 3 KYIARRLIIMIPELIIISFIVFIIMEAAPGD----FLDMYRLDPSVSQQFLEKMEKELGL 58
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKP QY + K VL GD G S +YY +PV+ ++ E + + L +L W +G +
Sbjct: 59 DKPWIVQYGIWLKNVLKGDFGYS-FYYRRPVSTLIWERVFATVILSVSSLAFEWLLGIIV 117
Query: 127 GALAGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G + K D L + + A P F+ AILL Y+ K GWFPI+G S
Sbjct: 118 GVFSALKKYSIWDKILTVVAFSGIALPGFFLAILLLYMAA-KTGWFPIAGMVSVNHNQMT 176
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNM---IIYEIEADYIRYLESLGVSEKIL 241
+WE KD H LP ++L GG+A MR M ++ + DY+ + + G+ E+++
Sbjct: 177 TWEKFKDIASHLVLPTIAL---GFGGFASLMRYMRGSLLDVLNEDYVEFARAKGMPERVV 233
Query: 242 M-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
+ KHA +NA+ P +T L + ++ G V ++ +F++PG+G ++ Q ++ QD +++ +
Sbjct: 234 IYKHALRNAINPMITFLGFSISNVLGGAVIIENIFAWPGMGRLIYQALLQQDIYIVMASA 293
Query: 301 LVIILTVLVANFVIDLLYAIIDPRVR 326
++ + +++ N V D+L A +DPRVR
Sbjct: 294 VISAIMLVIGNLVADVLLAAVDPRVR 319
>dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 333
Score = 161 bits (403), Expect = 1e-38
Identities = 107/338 (31%), Positives = 175/338 (51%), Gaps = 28/338 (8%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y+L + M+ I I F I ++PG+P +L A+ P+A L + GL+
Sbjct: 4 YVLHRVMLLIPVLIGMTIITFSIVHLIPGNPAQTILGEQAS-PQAVAELE----ERLGLN 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPY---DLALLFPALVASWFVGN 124
+P QY + + +L GD G S+ + A I +E +PY L L F A++ + VG
Sbjct: 59 EPYLVQYGYYVRDLLTGDFGTSL----RTRAPISEEIVPYLGATLELTFFAMLFAVVVGV 114
Query: 125 WLGAL-AGKNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFP----------- 171
G + A K +Y + L S P FW A++ ++F +LGWFP
Sbjct: 115 NAGIISAWKQHSFFDYACMLVALLGVSMPIFWLALMQQWIFAQELGWFPAFGRDNPRDPI 174
Query: 172 --ISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
I+G Y I W+ + L H LP ++L + + A R+ ++ + +DYIR
Sbjct: 175 QSITGLYVLDAILHWRWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIR 234
Query: 230 YLESLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
+ + G S+ +++ KHA KNAM+P +T LQ G+L+ G + + +FS+PGIG + + I
Sbjct: 235 TVHAKGSSQFVVIYKHALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAI 294
Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
+DY +IQ LV+ + +V N ++DLLY+ IDPR++
Sbjct: 295 TYRDYPVIQSGILVVAIMFVVINLIVDLLYSYIDPRIK 332
>pir||E70343 transporter (OppBC family) - Aquifex aeolicus
>gi|2983140|gb|AAC06743.1| (AE000692) transporter (OppBC
family) [Aquifex aeolicus]
Length = 327
Score = 160 bits (401), Expect = 2e-38
Identities = 99/322 (30%), Positives = 164/322 (50%), Gaps = 8/322 (2%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++L + + I T + F+I ++ PGD + L PE + L +GL
Sbjct: 3 KFILFRVLQAIPTLLGVTFLSFLIIKLAPGDYLDQLRLNPQISPETIERLK----HLYGL 58
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKPL QY + K L DLG S Y+ PVAE++ E +P L L + + +W + L
Sbjct: 59 DKPLLVQYFLWLKNALFFDLGYSFQYHA-PVAELILERIPNTLLLSVSSALFAWLLSIPL 117
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G LA +N D +++ Y + P F+ A LL + F K G P+ G S
Sbjct: 118 GTLAAFKENSLFDRFVVGFSYTFMSVPSFFLAFLLLF-FASKTGILPVGGMQSPNFEQLS 176
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKH 244
E + D L H +P L+L +V L +R+ ++ + + + L++ GV L++H
Sbjct: 177 IPEKVLDILKHLIIPSLTLGLVSLASLTRLVRSSVLEILSSPMVTMLKAKGVGTFTLVRH 236
Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
KNAM P T L ++ L++G ++++ +PG+G +++ +++QD FL+ G +
Sbjct: 237 VLKNAMNPFTTLLGYEIASLISGAALIEIIVGWPGMGMLMLNAVLSQDLFLVMGGLYIGT 296
Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
+ +LV N + DLL A IDPRVR
Sbjct: 297 IMLLVGNLIADLLLAYIDPRVR 318
>sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1073367|pir||S47765 dipeptide transport system
permease protein dppb - Escherichia coli
>gi|349226|gb|AAA23703.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466682|gb|AAB18521.1| (U00039)
dppB [Escherichia coli] >gi|1789965|gb|AAC76568.1|
(AE000431) dipeptide transport system permease protein 1
[Escherichia coli K12]
Length = 339
Score = 159 bits (399), Expect = 3e-38
Identities = 100/340 (29%), Positives = 175/340 (51%), Gaps = 26/340 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++LR+ + I TF + F ++PGDP+ ++ PE H+ + GL
Sbjct: 3 QFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPER----HAQLLAELGL 58
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKP+W+QY+ + V+HGDLGIS+ PV E L L A++ + VG +
Sbjct: 59 DKPMWQQYLHYIWGVMHGDLGISMKSRI-PVWEEFVPRFQATLELGVCAMIFATAVGIPV 117
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS------- 177
G LA + D+ + + + P FW+ ++L L + P+SG S
Sbjct: 118 GVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDD 177
Query: 178 ------YGIIPSLSW----EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADY 227
+ +I + W FI D + H LP + L + L R+ ++ + DY
Sbjct: 178 SNPLTGFMLIDTAIWGEDGNFI-DAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDY 236
Query: 228 IRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQ 286
IR + G++ ++++ HA +NAMLP VT + LQ+G L+AG + + +FS+PG+G L+
Sbjct: 237 IRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLID 296
Query: 287 GIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
+ +DY ++QG L++ +++ N ++DLLY +++PR+R
Sbjct: 297 ALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
>emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 330
Score = 155 bits (388), Expect = 7e-37
Identities = 103/329 (31%), Positives = 172/329 (51%), Gaps = 25/329 (7%)
Query: 3 SGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQ 62
+G R +L++ + + F T+ F + R+ GDP+ +LL AT + HS
Sbjct: 23 TGPLRGVLKRLLTALFVLFCTATVAFFLVRLS-GDPVKILLPPDATAEQERVLRHS---- 77
Query: 63 AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
GLD+ L+ QY+ + + +LH D G S+ Y +PV+EIL + LP + L AL + V
Sbjct: 78 -LGLDQSLFAQYLDYLRGLLHLDFGDSLVY-GQPVSEILADRLPATIELAAAALAVTLVV 135
Query: 123 GNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180
G +A + + D +M Q++P FW ILL +F L P SG YG
Sbjct: 136 AIPAGIVAAMRRGRGTDKTVMTGVLLGQSTPPFWVGILLILVFAVWLRALPASG---YGT 192
Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
+ +L LP ++L + + A +R+ +I + +D+IR + G +
Sbjct: 193 LANL------------VLPAVTLAVYSVAVVARLLRSSLIDVLSSDHIRSARAKGFGPLQ 240
Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
++++H +NA LP VT + L++G L+ G + + VFS+PG+G + ++ I N+D+ L+Q
Sbjct: 241 VVLRHGLRNASLPVVTVVGLEVGNLLGGAILTERVFSWPGVGQLTVEAISNRDFPLVQAT 300
Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
L T +V N ++DL Y+ +DPRVR S
Sbjct: 301 VLFFAATFVVVNLLVDLSYSFLDPRVRTS 329
>pir||F75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458683|gb|AAF10534.1|AE001948_3
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 345
Score = 155 bits (387), Expect = 9e-37
Identities = 109/345 (31%), Positives = 164/345 (46%), Gaps = 31/345 (8%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHS------YFV 61
YL+R+ + +L + F R++PG P +L T H +F
Sbjct: 4 YLIRRLLRTLLVMLGISLLVFTFVRLIPGGPCTAILGERGTPESIAACNHDRGFDRPWFF 63
Query: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
A G L QY + +L GDL SI PV E LK P + L F AL+ +
Sbjct: 64 NAGGEGGALNAQYPEYMAGLLRGDLDKSIITQI-PVKEDLKTRFPATVELAFAALIFALL 122
Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY- 178
VG G +A +N DN I + P FW +LLSY F KLGW P S
Sbjct: 123 VGLPAGIIAALRRNSLWDNLATTISLIGVSMPVFWLGLLLSYFFGVKLGWLPPSARLGTE 182
Query: 179 -------------GII---PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYE 222
G++ P+ +W+ K H LP ++L + L A R+ ++
Sbjct: 183 FDLQSITGMNVLDGLLRGQPAAAWDAAK----HLVLPAIALGTIPLAIIARITRSSLLDV 238
Query: 223 IEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIG 281
+ DY+R + G+S + I +KHA +NA+LP VT + LQ+G L+ G V + +FS+ G+G
Sbjct: 239 LGQDYVRTARAKGLSARNITLKHALRNALLPIVTVIGLQIGGLLGGAVLTETIFSWNGVG 298
Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
L I +D+F+IQG + I L + + N ++DL YA +DPR++
Sbjct: 299 SWLYDAISARDFFVIQGGVIFIALVISLVNLLVDLSYAALDPRIQ 343
>pir||B38447 oligopeptide permease oppB homolog - Bacillus subtilis
>gi|580897|emb|CAA39788.1| (X56347) OppB [Bacillus
subtilis]
Length = 311
Score = 153 bits (384), Expect = 2e-36
Identities = 98/333 (29%), Positives = 176/333 (52%), Gaps = 29/333 (8%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+Y+ R+ + I+T F VT+ F + + PG P + PE L++++ GL
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKPL+ QY+S+ K+V D G S Y + V +++ P L A++ + +G
Sbjct: 56 DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALGLGVLF 115
Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIP 182
G +A + K +Y + I S P F A +L Y+F+ KLG FP++G +++Y +P
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL- 241
S++ ++P F+ +L R+ +I + +DYIR ++ G+S L
Sbjct: 176 SIALA---------SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSRPALT 218
Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
++HA +NA+LP VT + ++ G+ ++ +F PG+G + I N+DY +I G +
Sbjct: 219 VRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTV 278
Query: 302 VIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
+ +L+ ++D+LY IIDPR+++S ++GA
Sbjct: 279 FFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA 311
>sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442405|pir||H69668 oligopeptide transport system
permease protein oppB - Bacillus subtilis
>gi|2633498|emb|CAB13001.1| (Z99110) oligopeptide ABC
transporter (permease) [Bacillus subtilis]
Length = 311
Score = 153 bits (384), Expect = 2e-36
Identities = 97/333 (29%), Positives = 176/333 (52%), Gaps = 29/333 (8%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+Y+ R+ + I+T F VT+ F + + PG P + PE L++++ GL
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKPL+ QY+S+ K+V D G S Y + V +++ P L A++ + +G
Sbjct: 56 DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLF 115
Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIP 182
G +A + K +Y + I S P F A +L Y+F+ KLG FP++G +++Y +P
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-IL 241
S++ ++P F+ +L R+ +I + +DYIR ++ G+S +
Sbjct: 176 SIALA---------SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSRPAVT 218
Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
++HA +NA+LP VT + ++ G+ ++ +F PG+G + I N+DY +I G +
Sbjct: 219 VRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTV 278
Query: 302 VIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
+ +L+ ++D+LY IIDPR+++S ++GA
Sbjct: 279 FFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA 311
>pir||F72451 probable peptide transport system permease protein APE2258 -
Aeropyrum pernix (strain K1) >gi|5105959|dbj|BAA81270.1|
(AP000064) 339aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 339
Score = 153 bits (383), Expect = 3e-36
Identities = 92/334 (27%), Positives = 164/334 (48%), Gaps = 18/334 (5%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
RY + + + + T T+ FI+ R++PGDP+ L + PE + + + GL
Sbjct: 9 RYAVTRALAIVPTVLILYTVVFIVLRVIPGDPVTAALGTRSIPPEELEAIR----ERLGL 64
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
D+PLW QYI + V+ GD G S+ Y +PVA + E P L L + S +G
Sbjct: 65 DQPLWRQYIDYLLGVMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGS 124
Query: 127 GALAGKNKKLDNYLMPIFYFLQASPYF-WFAILLSYLFTFKLGWFP-------------I 172
G +A L + L+ + + + W ++L Y+F+ KLG P +
Sbjct: 125 GVVAAFRGGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVV 184
Query: 173 SGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
+G Y I + + + + H LP L+L +V G + +R + + ++
Sbjct: 185 TGLYVLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYR 244
Query: 233 SLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQD 292
+ G+ E + H + +++P +T + LQ +L+ G V + FS+PG+G +L++ I +D
Sbjct: 245 ARGLRESRIAVHMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRD 304
Query: 293 YFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
Y IQG + V + + ++D++YAI++PRVR
Sbjct: 305 YSTIQGVTVFFAFMVGLVSLIVDIIYAIVNPRVR 338
>pir||C64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313397|gb|AAD07368.1| (AE000548)
dipeptide ABC transporter, permease protein (dppB)
[Helicobacter pylori 26695]
Length = 334
Score = 152 bits (379), Expect = 8e-36
Identities = 101/337 (29%), Positives = 167/337 (48%), Gaps = 22/337 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
+++++ + I T F I F++ ++PGDP V+L +A + + FGL+
Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGE-----KANQAAIDALREQFGLN 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
KPL EQY F VLHG+ G SI +PV + P + L AL + +G +G
Sbjct: 59 KPLIEQYFFFINNVLHGNFGTSIMT-GEPVMHEFWQRFPATVELALIALFMALVLGISVG 117
Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPI------------- 172
LA K + +Y F S P FW ++L Y+F+ +LGW P+
Sbjct: 118 VLAAIKRYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGP 177
Query: 173 SGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
+G Y + + + D + H LP + L V A R + + DY+R +
Sbjct: 178 TGLYLIDSLIARDYGAFMDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAK 237
Query: 233 SLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
+ G S +++ H +NA++P T L L L+ G++ + VFS+PGIG ++ + +
Sbjct: 238 AKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQR 297
Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
D+ +IQ L+I + + AN ++D+LYA IDPR+R+S
Sbjct: 298 DFPIIQSMSLIIAMMYIGANLLVDILYAFIDPRIRLS 334
>pir||G71951 dipeptide transport system permease protein - Helicobacter pylori
(strain J99) >gi|4154809|gb|AAD05865.1| (AE001465)
DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 334
Score = 151 bits (377), Expect = 1e-35
Identities = 103/337 (30%), Positives = 169/337 (49%), Gaps = 22/337 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
+++++ + I T F I F++ ++PGDP V+L +A + + FGL+
Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGE-----KANQAAIDALREQFGLN 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
KPL EQY F VLHG+ G SI +PV + P + L AL + +G +G
Sbjct: 59 KPLIEQYFFFINNVLHGNFGTSIMT-GEPVMHEFWQRFPATVELALIALFMALVLGISVG 117
Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYS-------- 177
LA K + +Y F S P FW ++L Y+F+ +LGW P+ G S
Sbjct: 118 VLAAIKRYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGP 177
Query: 178 ---YGIIPSLSWEF--IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
Y I ++ ++ D + H LP + L V A R + + DY+R +
Sbjct: 178 TGLYLIDSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAK 237
Query: 233 SLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
+ G S +++ H +NA++P T L L L+ G++ + VFS+PGIG ++ + +
Sbjct: 238 AKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQR 297
Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
D+ +IQ L+I + + AN ++D+LYA IDPR+R+S
Sbjct: 298 DFPIIQSMSLIIAMMYIGANLLVDVLYAFIDPRIRLS 334
>dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 322
Score = 151 bits (377), Expect = 1e-35
Identities = 92/324 (28%), Positives = 172/324 (52%), Gaps = 8/324 (2%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+ ++R+ I I F I F+I + MPGDP L + + P ++ + + +GL
Sbjct: 3 KLIIRRCFIMIPQLFLLSVIVFMIAQAMPGDP---LTGFYQSNPNISQEVIDAQRERYGL 59
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
+ P + QY+ + L GD G S Y PV E++ + + L L+ ++ + L
Sbjct: 60 NDPWYVQYVRWVGNALQGDFGDS-YQQRIPVTEVIDNRIWNTIWLSLLTLIMTYMIAIPL 118
Query: 127 GALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G L+G+ + LD + Y A+P F ++L+ +LF F+LGWFP G+ S P
Sbjct: 119 GLLSGRYNDTLLDRAITGYTYVGFAAPVFITSLLMLFLFGFQLGWFPTGGSVSPHAQPG- 177
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMK 243
++ ++ ++H LP SL ++ +R+ +I + ++DY+R + G SE+ I +K
Sbjct: 178 TFGYVLSKINHMLLPAFSLAIITTVSTVQYLRSELIDQKQSDYVRTARARGASERRIYLK 237
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
H +N++LP +L L+ G + V+++FSYPG+G + + IM +DY ++ L+
Sbjct: 238 HLPRNSLLPIAAFFGYELTGLIGGTIFVEMIFSYPGMGQLFLSSIMQRDYSVVTTMVLLF 297
Query: 304 ILTVLVANFVIDLLYAIIDPRVRI 327
+ ++ + D++ +I+DPR++I
Sbjct: 298 GVASILGALLSDIILSIVDPRIKI 321
>sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLIC
>gi|7442416|pir||G64820 probable oligopeptide transport
protein b0831 - Escherichia coli
>gi|1787053|gb|AAC73918.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062408|dbj|BAA35526.1| (D90721) Hypothetical
protein o314 [Escherichia coli]
>gi|4062416|dbj|BAA35534.1| (D90722) Hypothetical
protein o314 [Escherichia coli]
Length = 306
Score = 150 bits (374), Expect = 3e-35
Identities = 98/322 (30%), Positives = 162/322 (49%), Gaps = 24/322 (7%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y++++ + I T F + F+ ++PGDP +R PEA + Q GLD
Sbjct: 4 YVIKRLLGLIPTLFIVSVLVFLFVHMLPGDP-----ARLIAGPEADAQVIELVRQQLGLD 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+PL+ Q+ + + GD G+S+ +PVA+ + L L ++V + G G
Sbjct: 59 QPLYHQFWHYISNAVQGDFGLSMVSR-RPVADEIASRFMPTLWLTITSMVWAVIFGMAAG 117
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
+A +N+ D M I + P F +LL +F+ +LGW P GA S+
Sbjct: 118 IIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSW------- 170
Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKH 244
H+ LP L+L A R + + DY+R + GVSE +++KH
Sbjct: 171 --------QHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKH 222
Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
+NAM+P VT + LQ G L+ G++ V+ VF++PG+G +L+ + +DY +IQ L+
Sbjct: 223 GLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFS 282
Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
L ++ N V+D+LYA I+P +R
Sbjct: 283 LEFILINLVVDVLYAAINPAIR 304
>gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis]
Length = 309
Score = 150 bits (374), Expect = 3e-35
Identities = 98/325 (30%), Positives = 168/325 (51%), Gaps = 25/325 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
RY+L++ + LT F T+ F + +++PG P L L A K + ++ +GL
Sbjct: 3 RYVLKRFVYMALTLFLITTLTFFLMKLLPGSP----LKNQEKLSPAQKEI---ILEKYGL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
+ P+ QY + + GDLG+S Y +PV +++ + + L A++ F+G L
Sbjct: 56 NDPVPVQYARYLGNLAKGDLGVSFQYDNRPVTDMIVDRIGPSAQLGLQAIILGTFIGLIL 115
Query: 127 GALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G +A +N +Y I L S P F FA LL Y KLGWFP+ A+ G P
Sbjct: 116 GIVAALRNNTWVDYGATIISVLGMSVPSFVFAALLQYFVGVKLGWFPV--AFWKG--PEF 171
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMK 243
+ +P ++L M + A R +I ++ADYI ++ G+S+ I++K
Sbjct: 172 T-----------VMPTIALSMAVIATIARFSRAELIEVMQADYILTAKAKGISQGVIIVK 220
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA +NA++P VT L + L+ G + ++ +++ PG+G ++ I DY +I G +
Sbjct: 221 HALRNALIPVVTILGPMVAALITGTLVIEQIYAVPGLGEQFVKSITVNDYTVIMGTTIFY 280
Query: 304 ILTVLVANFVIDLLYAIIDPRVRIS 328
++ F++D+LY IIDPR+R++
Sbjct: 281 SAIFILVIFIVDILYGIIDPRIRLA 305
>dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [Ochrobactrum
anthropi]
Length = 313
Score = 148 bits (371), Expect = 7e-35
Identities = 106/324 (32%), Positives = 172/324 (52%), Gaps = 23/324 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTID-FIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
RY++ + +++ + VTI F+ ++PGDP+ +++ E H G
Sbjct: 5 RYVISR-LLHAIPVVLGVTICVFLTIHLVPGDPVRIMMHGRIGDDEVAAIYHQ-----LG 58
Query: 66 LDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
+D+PL QY F + L G+LG SI PV +++ E L L LL + + S +
Sbjct: 59 MDRPLLVQYFDFVRHALTGNLGTSIVQ-KAPVTDLVLEKLWPTLLLLAFSTLISVLIAIP 117
Query: 126 LGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
LG +A +N+ D+ + + A P +W +LL LF LGWFPISG +
Sbjct: 118 LGLVASFYRNRWPDHAIRLVSSIGFAMPSYWIGLLLILLFGLWLGWFPISGIGQGHL--- 174
Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAI-GMRNMIIYEIEADYIRYLESLGVSE-KIL 241
+ LHH LP L++ + LG I +R+ ++ + ++YI + GVSE +IL
Sbjct: 175 -------EILHHLFLPALTISLF-LGPVLIQSLRSSMLDVLTSEYIEVARAKGVSEWRIL 226
Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
KH +NA++P +T LA+ + L++G V V+ VF PG+G +L++ + +DY LIQG L
Sbjct: 227 TKHVMRNALIPVITVLAINISWLLSGAVIVEYVFGLPGLGSLLVRSVGYRDYPLIQGLSL 286
Query: 302 VIILTVLVANFVIDLLYAIIDPRV 325
V + V+V N + DL Y ++D RV
Sbjct: 287 VFGVLVVVINLLADLSYMLVDRRV 310
>sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|11279742|pir||T44636 dipeptide transport protein
dppB [imported] - Bacillus firmus
>gi|1813496|gb|AAB41689.1| (U64514) dipeptide
transporter protein dppB [Bacillus firmus]
Length = 333
Score = 147 bits (368), Expect = 2e-34
Identities = 96/335 (28%), Positives = 170/335 (50%), Gaps = 22/335 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y +R+ ++ I + F I ++PG+P +L A+ P+A L + GL+
Sbjct: 4 YAMRRLLLLIPVLIGMTIVTFSIIHLIPGNPAQTILGEQAS-PQAIADLE----ERLGLN 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+P W QY + K + GDLG S+ KP+ E + L + L A++ + +G G
Sbjct: 59 EPYWVQYGLYMKDLATGDLGTSLRTN-KPIMEEIWPYLAATIELTIFAMIFAIIIGVNAG 117
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPI------------- 172
++ +N D M I + P FW A++ ++F +LGW P
Sbjct: 118 IVSAWKQNSWFDYLSMFIALVGVSMPIFWLALMEQWIFAQELGWLPAFGRDNPRDPIIST 177
Query: 173 SGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
+G Y + I S ++ + + H LP ++L + + A R+ ++ + +DYIR +
Sbjct: 178 TGLYVFDTIISGQFDKTWESIKHLILPGIALGTIPMAIIARMTRSSMLEVLRSDYIRTVN 237
Query: 233 SLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
+ G + +++ KHA KNA++P +T + LQ G L+ G + + +FS+PGIG + + I +
Sbjct: 238 AKGSGQGVVIYKHALKNALIPVLTVVGLQTGNLLGGAILTETIFSWPGIGRYIFEAINYR 297
Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
DY +IQ LV+ ++ N +DLLY+ IDPR++
Sbjct: 298 DYPVIQSGILVVATIFVLINLFVDLLYSYIDPRIK 332
>emb|CAC05748.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 307
Score = 145 bits (363), Expect = 6e-34
Identities = 100/323 (30%), Positives = 162/323 (49%), Gaps = 23/323 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
RY++R+ + I F A + F++ +M GDPIA L P L FGL
Sbjct: 3 RYVVRRLLQMIPVFIGATLLIFLMVNVM-GDPIAGLCGDRECDPATAAQLR----HEFGL 57
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
D+P+W+QY ++ V GD G + + +PV E++ A P + L A++ VG L
Sbjct: 58 DQPVWQQYATYMGNVFTGDFGTA--FNGQPVTELMGTAFPVTIRLTIVAILFEIVVGIIL 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G L G + + +D ++ + + + P F +LL L K GW I P++
Sbjct: 116 GVLTGLRRGRPVDTGVLLLTLVVISVPTFVTGLLLQLLLGVKWGW----------IDPAV 165
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
S E L +P L L V L R I +DY+R + G+ +++ +
Sbjct: 166 SSEAAFGEL---IVPGLVLASVSLAYVTRLTRTSIAENRRSDYVRTAIAKGLPRHRVITR 222
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
H +N+++P VT + +G L+ G + + +F+ G+GY L QGI+ Q+ + G V+
Sbjct: 223 HLLRNSLIPVVTFIGTDIGALMGGAIVTERIFNIHGVGYQLYQGILRQNTQTVVGFVTVL 282
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
+L LVAN V+DLLYA++DPR+R
Sbjct: 283 VLVFLVANLVVDLLYAVLDPRIR 305
>emb|CAC11408.1| (AL445063) dipeptide transport system permease protein (DPPB)
related protein [Thermoplasma acidophilum]
Length = 343
Score = 145 bits (362), Expect = 8e-34
Identities = 94/337 (27%), Positives = 166/337 (48%), Gaps = 19/337 (5%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
+++R+ + I T + F + I+ +P+A L +A P A++ + +GL+
Sbjct: 8 FIIRRAIYAIFTLLILIVFIFTLIHIIAPNPLA-LARLYAGNPHASQSELIGIEKKYGLN 66
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
P+++Q I++ K V G+LG Y + +PV +++ E LP L + +V S +G + G
Sbjct: 67 LPIYDQVINYIKDVFIGNLGYD-YLHDQPVLKLIGEYLPITLEFVLTGIVLSVIIGLFTG 125
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP--- 182
A A + K D + ++ + P F A +L + L P +G + + P
Sbjct: 126 AYAAARRRKPADYTIKGLYLATWSMPTFLLAAVLQLYIAYDLKLLPATGMVNPTLKPPPN 185
Query: 183 -----------SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYL 231
+ W + +HH LP LS+ ++ G R+ ++ ++ DY R
Sbjct: 186 VLAFPLLNAIYAHDWVYASSVIHHMILPTLSVALLSFGVITRLTRSTMLDIMDMDYFRLT 245
Query: 232 ESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMN 290
G+ K + A +NA +P VT + L + G V ++ +FSY G+GY ++Q + N
Sbjct: 246 IMKGIPRRKAVYGVALRNAAIPLVTYIVLAFAYAMGGAVVIEDIFSYHGMGYYIVQAVYN 305
Query: 291 QDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
DY I G ++I + V+VAN V D+LY I+DPRVR+
Sbjct: 306 LDYPGILGTTIIIAIAVIVANLVADVLYGILDPRVRL 342
>emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related protein [Thermoplasma
acidophilum]
Length = 331
Score = 143 bits (357), Expect = 3e-33
Identities = 94/322 (29%), Positives = 166/322 (51%), Gaps = 5/322 (1%)
Query: 9 LLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDK 68
+ RK + ++ F V I +++ RIMPG P+ + L E K + +G K
Sbjct: 12 ITRKIIQDVVLIIFVVVILYVVFRIMPGSPVDLFLHGLKHPTEQEKITIEKQLGLYG-GK 70
Query: 69 PLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGA 128
++ + + + + G YY + V ++K+ALPY L L A V S+ +G LG
Sbjct: 71 FSLTNFLIYLRDMFTFNFGED-YYTGQSVIFVIKQALPYTLLLFGSAAVISFAIGIPLGI 129
Query: 129 LAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSW 186
+ KK ++ ++ L + P+F FAI+ L FP+ + I +
Sbjct: 130 YTSFKRGKKSESGIITASTLLNSIPFFVFAIIFFVYLAGDLHIFPLRSIFPISYIVHPTL 189
Query: 187 EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHA 245
+ I+ L++ +P + L +V+ G + MR ++ + D+I + GVSE+ I+ HA
Sbjct: 190 KSIELILYYLAMPIIVLVIVEAAGHLLTMRAAMVSVLGEDFITTARAKGVSERGIMFHHA 249
Query: 246 FKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIIL 305
+NAM+P T +AL+ L++G V V+V+FS G+G VL + +DY + +GA VI +
Sbjct: 250 ARNAMIPVSTRMALEFAFLMSGAVIVEVIFSIHGMGTVLYDATLQEDYPVSEGALFVISI 309
Query: 306 TVLVANFVIDLLYAIIDPRVRI 327
V++A ID ++A +DPR+++
Sbjct: 310 IVILAYSAIDFIHAWLDPRIKV 331
>dbj|BAB04287.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 314
Score = 141 bits (353), Expect = 9e-33
Identities = 92/321 (28%), Positives = 155/321 (47%), Gaps = 21/321 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y+ ++ I FA+ I F+ R+ P DP L+ P T+ L + FGLD
Sbjct: 4 YIAKRIFAVIPIVLFAIFIMFVFIRLSPVDPAEAYLTAANIHP--TEELLAEKRHEFGLD 61
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+P+ QY+ V D G S Y +PV + + +P L L ++ + + LG
Sbjct: 62 QPMAVQYVQTIVKVFQLDFGHS-YVTNQPVWDEVTARMPATLQLAVSSIFLAVLISIPLG 120
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
L+ KN +D + + Y + P FW LL + F+ KL FP+ G S+
Sbjct: 121 FLSAIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIFFFSVKLNLFPVEGRGSWA------ 174
Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM-KH 244
H LP ++L + + + +R ++ +++ Y+ Y + G+ EK++M KH
Sbjct: 175 ---------HLVLPTVTLSLALIAIYTRLLRASVLEQMQESYVLYARTRGIKEKVIMVKH 225
Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
K A+ P +TGL + +G L+ G + V+ VFS+PG G + I N+D +IQ L+
Sbjct: 226 VLKLAISPVITGLGMNVGKLLTGTIIVEQVFSWPGFGRYFVDAIFNRDIPVIQCYVLLAA 285
Query: 305 LTVLVANFVIDLLYAIIDPRV 325
+V N ++DL+ +DPR+
Sbjct: 286 CLFIVCNLIVDLVQLAMDPRI 306
>sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1074011|pir||E64184 oligopeptide transport system
permease protein oppB - Haemophilus influenzae (strain
Rd KW20) >gi|1574678|gb|AAC22777.1| (U32792)
oligopeptide ABC transporter, permease protein (oppB)
[Haemophilus influenzae Rd]
Length = 306
Score = 141 bits (352), Expect = 1e-32
Identities = 90/323 (27%), Positives = 163/323 (49%), Gaps = 23/323 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++ ++ + + T F +T F + R+ PG P S A PE + + + L
Sbjct: 3 KFIFKRLLEALPTLFILITFSFFLMRLAPGSPFT---SERAYPPEVMANIEA----KYHL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
++PL++QY + + + GD G S Y + V +++ A P + L A + +G
Sbjct: 56 NEPLYKQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTA 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G LA +N + D LM P F FA +L +F LGW P +G ++ G
Sbjct: 116 GTLAALNQNSRWDYILMSFSMLGVIMPSFVFAPVLVLIFAIYLGWLP-AGGWNGGTAM-- 172
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
+ LP SL + + G A MR +I + +++IR ++ G+S +I++K
Sbjct: 173 ----------YMILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILK 222
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA + A+LP +T L ++ G++ ++ VF PG+G + + G +N+DY L+ +++
Sbjct: 223 HALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILV 282
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
++ N ++D+LYAIIDP++R
Sbjct: 283 GTLTILFNAIVDILYAIIDPKIR 305
>sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKB
>gi|628767|pir||S39595 NikB protein - Escherichia coli
>gi|404846|emb|CAA51660.1| (X73143) NikB [Escherichia
coli]
Length = 314
Score = 141 bits (351), Expect = 1e-32
Identities = 104/324 (32%), Positives = 167/324 (51%), Gaps = 23/324 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
RY+LR+ ++ I A I F+I R+ GDP L R + LP + L S GL
Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLIVRLGTGDPALDYL-RLSNLPPTPEMLASTRTM-LGL 60
Query: 67 DKPLWEQYISF-WKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
D+PL+ QY ++ WKA LH D GIS + +PV + + LP L L ALV
Sbjct: 61 DQPLYVQYGTWLWKA-LHLDFGIS-FASQRPVLDDMLNFLPATLELAGAALVLILLTSVP 118
Query: 126 LGALAGKNK-KLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
LG A +++ +L ++ + FL S P FW A LL F+ L W P G YG
Sbjct: 119 LGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG---YG---- 171
Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL-M 242
W+ H LP +S+ + L A +R ++ ++ + G+++K
Sbjct: 172 -GWQ-------HIILPAVSIAFMSLAINARLLRPSMLDVAGQRHVTWARLRGLNDKQTER 223
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
+H +NA LP +T + + +G L+ G + ++ +F++PG+G + I N+DY +IQ L+
Sbjct: 224 RHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLM 283
Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
+++ +V N ++DLL A +DPR+R
Sbjct: 284 MVVVFVVCNLIVDLLNAALDPRIR 307
>pir||F72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982325|gb|AAD36812.1|AE001813_4 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 341
Score = 141 bits (351), Expect = 1e-32
Identities = 90/330 (27%), Positives = 167/330 (50%), Gaps = 24/330 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFA----TLPEATKYLHSY--F 60
++LL++ + ++ + I +++ + PG+ + R A T P+ Y + F
Sbjct: 26 KFLLKRLLTIAISMVVVIVITYVLMWLAPGNFFELQRVRDAIARVTTPDDPAYQATLKGF 85
Query: 61 VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
+ +GL+ PLW+Q + + K + G S + + +++KE P L +++ +
Sbjct: 86 EERYGLNNPLWKQILMYLKGAVVFKFGPSFSDPARNIEDLIKEKFPITFTLALSSILFAL 145
Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
VG LG LA KN +D M + A P + A+ L +F+ LGW P SG
Sbjct: 146 VVGVPLGILAALKKNTWIDYTAMTVSVIGVAIPSYVVAVFLILIFSIYLGWLPTSG---- 201
Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
WE I+ + LP ++L + L A R ++ + D+IR + G +
Sbjct: 202 -------WEGIRTKI----LPTIALALGPLASVARFTRVSLLDTLNQDFIRTAYAKGGDD 250
Query: 239 K-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
+ ++MKHA + +M+P VT + Q+ L+ G V V+ +F PG+G + + +DY L+
Sbjct: 251 RTVIMKHALRPSMIPLVTIVGPQMAYLMVGTVWVENIFRIPGLGQLFANAAVTRDYPLLV 310
Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
+ ++ LTV++ N ++D+LYAI+DPR+++
Sbjct: 311 TSTFILALTVMIMNLIVDVLYAILDPRIKL 340
>gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T45531 agaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665707|gb|AAB88467.1| (AF242881) agaB
[Agrobacterium tumefaciens]
Length = 323
Score = 139 bits (348), Expect = 3e-32
Identities = 94/314 (29%), Positives = 164/314 (51%), Gaps = 17/314 (5%)
Query: 17 ILTFFFAVTIDFIIPRIMPGDPIAVLLSRFAT-LPEATKYLHSYFVQAFGLDKPLWEQYI 75
++ + T+ F I IMPGDP+ +LL + PEA + GLD+P+ QY+
Sbjct: 19 LVQLWVIATLVFSIMYIMPGDPVLLLLGPESNPSPEAVAAMR----HQLGLDQPVMSQYL 74
Query: 76 SFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KN 133
+ GDLG S+ V E + ++P + L A++ + +G +G A +
Sbjct: 75 KWLGNAASGDLGNSVDGVS--VVEYITASIPKTMELATAAIILASIIGVPIGIAAALRRG 132
Query: 134 KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKDYL 193
+ LD+ L + + P + LL +F+ KLGW P SG I S+ F K
Sbjct: 133 RFLDSLLTSLSTLGISLPVYILGSLLILMFSLKLGWLPSSGYTD--ISRSVFLHFQK--- 187
Query: 194 HHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLP 252
TLP ++L + A R+ ++ + D++R L + G+ E+ ++ H +NA +P
Sbjct: 188 --LTLPAVTLGLGLAASIARMTRSSMLEILGRDFVRSLRARGMRERRVIWVHVLRNAAIP 245
Query: 253 QVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANF 312
VT + LQLG L+ G V V+ ++++PG+ +L+ + N++Y L+QG+ L I ++ N
Sbjct: 246 IVTIIGLQLGNLMGGTVLVEALYNWPGLSTLLVTAVSNRNYPLVQGSILTIAALFILINL 305
Query: 313 VIDLLYAIIDPRVR 326
+D+LY+++DPR+R
Sbjct: 306 CVDILYSLLDPRIR 319
>pir||S47696 nickel transport system permease protein nikB - Escherichia coli
>gi|466613|gb|AAB18452.1| (U00039) nikB [Escherichia
coli] >gi|1789888|gb|AAC76502.1| (AE000423) transport of
nickel, membrane protein [Escherichia coli K12]
Length = 314
Score = 139 bits (347), Expect = 4e-32
Identities = 103/324 (31%), Positives = 167/324 (50%), Gaps = 23/324 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
RY+LR+ ++ I A I F++ R+ GDP L R + LP + L S GL
Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYL-RLSNLPPTPEMLASTRTM-LGL 60
Query: 67 DKPLWEQYISF-WKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
D+PL+ QY ++ WKA LH D GIS + +PV + + LP L L ALV
Sbjct: 61 DQPLYVQYGTWLWKA-LHLDFGIS-FASQRPVLDDMLNFLPATLELAGAALVLILLTSVP 118
Query: 126 LGALAGKNK-KLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
LG A +++ +L ++ + FL S P FW A LL F+ L W P G YG
Sbjct: 119 LGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG---YG---- 171
Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL-M 242
W+ H LP +S+ + L A +R ++ ++ + G+++K
Sbjct: 172 -GWQ-------HIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTER 223
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
+H +NA LP +T + + +G L+ G + ++ +F++PG+G + I N+DY +IQ L+
Sbjct: 224 RHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLM 283
Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
+++ +V N ++DLL A +DPR+R
Sbjct: 284 MVVVFVVCNLIVDLLNAALDPRIR 307
>dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 315
Score = 139 bits (347), Expect = 4e-32
Identities = 92/326 (28%), Positives = 161/326 (49%), Gaps = 25/326 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLS--RFATLPEATKYLHSYFVQAF 64
R +R+ + L F + F+ R+ PGDP+ +L+ + E + L +
Sbjct: 3 RIFIRRLLEVALFVLFVTFVSFLFVRLAPGDPVLTILNVDELSVSQEEVETLR----EDM 58
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
G +KPL QY + + D G+S Y +PV +++ + LP L L +L+ V
Sbjct: 59 GFNKPLLVQYGHWLLDFVRLDFGVS-YVTGQPVMDMIMKGLPATLELTVGSLIVMLIVSI 117
Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
LG+LA +N+ +D+ + A P FW ++ LF +L W P G
Sbjct: 118 PLGSLAALYRNRWIDHLSRILAILGAAIPSFWLGLIFIDLFAVRLNWLPTMG-------- 169
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-IL 241
+D LP ++L + + +R+ ++ + ++IR + G+SEK I
Sbjct: 170 -------RDGFVSLILPSVTLGLAISSVYVRLLRSSLLDSLSQEFIRAARARGLSEKRIF 222
Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
+ HA ++++ P +T + LG L+ G V ++V+F+YPGIG +++ I +DY LIQG L
Sbjct: 223 VAHALRHSLPPVITVFGVSLGSLIGGVVVIEVLFAYPGIGKLVVDAIRQRDYPLIQGYIL 282
Query: 302 VIILTVLVANFVIDLLYAIIDPRVRI 327
V+ L V V N +DL Y ++P +++
Sbjct: 283 VMALIVFVINTSVDLSYRYLNPEMKL 308
>pir||B75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459333|gb|AAF11132.1|AE002000_8
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 333
Score = 139 bits (346), Expect = 6e-32
Identities = 95/329 (28%), Positives = 170/329 (50%), Gaps = 13/329 (3%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y+LR+ + +I TF A + F I + PGD ++ L + PE + L + FGLD
Sbjct: 10 YILRRVLQFIPTFVLATMLAFFITQAAPGDFLSQLKENPSVKPETIERLR----REFGLD 65
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+P++ QY+ ++K +L GDLG S + Y +PVAE+++ L L+ + V + V +G
Sbjct: 66 QPVFVQYLYWFKNLLMGDLGDS-FQYKRPVAEVIQGPFLNSLILVVISTVLHFAVSIPVG 124
Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTF---KLGW-FPISGAYSYGII 181
+ K + + F ++ P F+F +L Y + GW P+ G S +
Sbjct: 125 VYSALKPYSFWDRVFTFFSYIGLGIPSFFFGLLAIYAMLQLKQQFGWDLPLGGKSSSALP 184
Query: 182 PSLS-WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK- 239
+S + D H +P + L + + G + +R ++ + DYIR + G++++
Sbjct: 185 TDISPLRHVWDVFLHALIPSIILVLRGISGESRFIRGQMLEVLGQDYIRTARAKGLNDRA 244
Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
+ KHAFK AM+P + GL L L+ G +++VF++PG+ + + + NQD +++
Sbjct: 245 VTYKHAFKLAMIPTIAGLGGLLPALIGGAGFLEIVFNWPGLTPLQLTALGNQDIYILMAV 304
Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
+ L ++ N + DLL A +DPR+R S
Sbjct: 305 TALGTLLYMIGNLLSDLLLAAVDPRIRYS 333
>dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 139 bits (346), Expect = 6e-32
Identities = 93/318 (29%), Positives = 156/318 (48%), Gaps = 24/318 (7%)
Query: 12 KTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLW 71
K + ++ F ++ + G+P+A++L A+ + + S GLD+P
Sbjct: 7 KRLAEMIPVLFIISFIVFALVFVAGNPVALMLPEDASQEDIDQLTAS-----LGLDQPFL 61
Query: 72 EQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG 131
QY + ++ GD G S Y + +L E LP L L ALV + + LG +
Sbjct: 62 VQYGKYLLNLVQGDFGESFRYNTSALPLVL-ERLPATLELAVAALVLAVAMAIPLGVWSA 120
Query: 132 --KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFI 189
++ +D +A P FW I+L +F+ LGWFP+SG + G
Sbjct: 121 TKQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSGRGTLG---------- 170
Query: 190 KDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKN 248
H LP ++L +R+ +I + DYIR S G+ E ++ KHAF+N
Sbjct: 171 -----HLVLPAMTLATGIAAEITRLLRSSMIEILNQDYIRTARSKGIREGMVVYKHAFRN 225
Query: 249 AMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVL 308
+++P VT +ALQ +V G + + VFS+PG+G +L+Q + +D ++Q VI + V+
Sbjct: 226 SLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQAVHTRDMAIVQACVFVIAILVI 285
Query: 309 VANFVIDLLYAIIDPRVR 326
N V D+LY ++DPR++
Sbjct: 286 FMNLVADVLYRLLDPRIK 303
>pir||B75118 dipeptide abc transporter, permease protein (dppb) PAB1872 -
Pyrococcus abyssi (strain Orsay)
>gi|5458170|emb|CAB49659.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 332
Score = 138 bits (345), Expect = 8e-32
Identities = 97/338 (28%), Positives = 166/338 (48%), Gaps = 20/338 (5%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
M+ +K++L+R+ + +I T I F+I +P DP +A +ATK
Sbjct: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA----WAGGEKATKEAIELIK 56
Query: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
+ + LD+P ++QY+ K ++ I PV + + P L A
Sbjct: 57 KMYHLDEPWYDQYVFLIKGLITNT--IIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILI 114
Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSY 178
+G LG ++ +N +D ++ IF L S P FW L+ Y+F K I+G +
Sbjct: 115 IGIPLGIISALKRNSWIDT-VVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPF 173
Query: 179 GI----IPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYI 228
IP + ++E K +L + LP +L + +G A +RN + + +DY+
Sbjct: 174 PEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV 233
Query: 229 RYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
++L++ GV + + +HA KNA++P VT L LQ G L+ G + VF PG+G +Q I
Sbjct: 234 QFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293
Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
N D+ ++ + + + N ++D+LYA+IDPRVR
Sbjct: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
>pir||B72617 probable dipeptide transport system permease protein APE1395 -
Aeropyrum pernix (strain K1) >gi|5105078|dbj|BAA80392.1|
(AP000061) 336aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 336
Score = 138 bits (344), Expect = 1e-31
Identities = 93/337 (27%), Positives = 159/337 (46%), Gaps = 18/337 (5%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
+S + R+L+R+ + +I T + F+I ++PG+P + PE + + V
Sbjct: 5 VSNLTRFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKASPEVVEQI----V 60
Query: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
+ + LD+P WEQY F +L + + V +++ E LP + L A V
Sbjct: 61 REYRLDRPFWEQYFFFMYKLLTNTMISPVT--SNYVWDMIVERLPVTIQLTLLAFVFIIL 118
Query: 122 VGNWLGALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA---- 175
+G LG ++ + +D + + + P FW A LL ++F K ++G
Sbjct: 119 LGIPLGIISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPP 178
Query: 176 YSYGIIP------SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
YS IP L +D L +T+P +L +G A +RN + + DY+
Sbjct: 179 YSITGIPLIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVE 238
Query: 230 YLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIM 289
++++ G+ +H +N+ +P VT L L G L+ G + +F PG+G L+ I
Sbjct: 239 FMDARGLPSTWKYRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSIN 298
Query: 290 NQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
N DY + G L + + L N ++D+ YAIIDPRVR
Sbjct: 299 NYDYLSLMGGVLFVGIIYLTVNLLVDITYAIIDPRVR 335
>sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDR
>gi|7449121|pir||A64902 peptide transport system
permease protein b1486 - Escherichia coli
>gi|1742426|dbj|BAA15141.1| (D90789) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1742437|dbj|BAA15151.1| (D90790) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1787761|gb|AAC74559.1| (AE000245) putative transport
system permease protein [Escherichia coli K12]
Length = 340
Score = 137 bits (342), Expect = 2e-31
Identities = 99/317 (31%), Positives = 159/317 (49%), Gaps = 23/317 (7%)
Query: 26 IDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYISFWKAVLHGD 85
I FII ++PGDP +L A+ + Q GLD+PL+ Q+ + + HGD
Sbjct: 24 ITFIISHLIPGDPARLLAG-----DRASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGD 78
Query: 86 LGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPI 143
LG SI +PV E L+ P L L F AL+ + +G LG L+ +N+ LD+ + +
Sbjct: 79 LGTSIRT-GRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVWRNRWLDHLVRIM 137
Query: 144 FYFLQASPYFWFAILLSYLFTFKLGWFP--------------ISGAYSYGIIPSLSWEFI 189
++P FW + + LF L P ++G Y + + E
Sbjct: 138 AITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVF 197
Query: 190 KDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKN 248
+ L H LP L+L V LG A +R+ ++ ++ DYIR + G+ I++ +A N
Sbjct: 198 FNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPN 257
Query: 249 AMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVL 308
A++P +T L L LG L+ G V + VF++PG+G ++ I D+ + G +V+ +
Sbjct: 258 ALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYV 317
Query: 309 VANFVIDLLYAIIDPRV 325
+ N V+DLLY IDPR+
Sbjct: 318 LVNLVVDLLYLWIDPRI 334
>pir||C82242 oligopeptide ABC transporter, permease protein VC1092 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655561|gb|AAF94251.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 306
Score = 136 bits (339), Expect = 4e-31
Identities = 88/323 (27%), Positives = 158/323 (48%), Gaps = 23/323 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++ ++ I T +TI F + R PG+P + S PE +++ +GL
Sbjct: 3 KFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINA----KYGL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKP+ EQY+++ ++ GD G S Y V E++ ALP + + A V + +G +
Sbjct: 56 DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G +A +N +D +M P F A +L Y+F + FP G G
Sbjct: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGF---- 171
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMK 243
+ LP L + ++ + +A R +I + +++IR + G+S I++K
Sbjct: 172 ---------EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVK 222
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA K A+LP V+ + ++ G+V ++ +F PGIG + + N+DY L+ G ++I
Sbjct: 223 HALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILI 282
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
++ N ++D+L A IDP++R
Sbjct: 283 GFLFILFNAIVDILLAYIDPKIR 305
>pir||C71841 probable peptide ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155769|gb|AAD06746.1| (AE001544) putative Peptide
ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 348
Score = 134 bits (335), Expect = 1e-30
Identities = 101/344 (29%), Positives = 171/344 (49%), Gaps = 30/344 (8%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPE-------------ATK 54
Y+L++ ++ I T +TI+F + + PG PI ++++ A++
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 55 YLHSYFVQ----AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLA 110
L S ++ +G DKP+ E+Y+ K L D G S Y K V +++KE LP ++
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIK-VIDLIKEKLPVSIS 122
Query: 111 LLFPALVASWFVGNWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFK-- 166
L F + + + + LG K N+ LD + A P F FA++L F
Sbjct: 123 LGFFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNY 182
Query: 167 LGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWA---IGMRNMIIYEI 223
WFP+ G S + IKDYL H TLP L + LGG+A + ++N + E+
Sbjct: 183 WHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLC---ISLGGFASLTLLVKNSFLDEM 239
Query: 224 EADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQ-LGLLVAGNVTVQVVFSYPGIG 281
Y+ ++ G S +I H F+NA+L V G LG+ + ++ +++VFS G+G
Sbjct: 240 GKLYVVSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLG 299
Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
+ + I+++DY ++ G+ + L LVA+ + DLL +IDPR+
Sbjct: 300 LLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 311
Score = 134 bits (334), Expect = 1e-30
Identities = 91/333 (27%), Positives = 169/333 (50%), Gaps = 29/333 (8%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+Y+ R+ + I+T F VT+ F + + PG P + PE L++++ GL
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKPL+ QY+S+ K+V D G S Y + V +++ P L A++ + +G
Sbjct: 56 DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLF 115
Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIP 182
G +A + K +Y + I S P F A +L Y+F+ KLG FP++G +++Y +P
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKIL 241
S++ ++P F+ +L R+ +I + +DYIR ++ G+S +++
Sbjct: 176 SIALA---------SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSAQRLQ 218
Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
F+ + L ++ G+ ++ +F PG+G + I N+DY +I G +
Sbjct: 219 CGTPFETHFCRLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTV 278
Query: 302 VIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
+ +L+ ++D+LY IIDPR+++S ++GA
Sbjct: 279 FFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA 311
>pir||D71014 probable dipeptide transport system permease protein dppB -
Pyrococcus horikoshii >gi|3257833|dbj|BAA30516.1|
(AP000006) 332aa long hypothetical dipeptide transport
system permease protein dppB [Pyrococcus horikoshii]
Length = 332
Score = 134 bits (334), Expect = 1e-30
Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 20/338 (5%)
Query: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
M+ +K++L+R+ + +I T I F+I +P DP +A +AT+
Sbjct: 1 MANLKKFLIRRLLTFIPTIIGVTLIVFLIAYKIPADPAKA----WAGGEKATQQAIELIK 56
Query: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
+ + LD+P ++QY+ K ++ I P+ + + P L L A +
Sbjct: 57 KMYHLDRPWYDQYVFLIKGLIANT--IIDPRTSNPIMYDVGKRFPVTLQLAIIAFIFILI 114
Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGA--- 175
+G LG ++ +N +D ++ IF L S P FW L+ Y+F K I+G
Sbjct: 115 IGIPLGIISALKRNTWVDT-VVRIFALLGVSTPAFWLGYLMIYIFFVKYKVTTIAGVPPM 173
Query: 176 -YSYGIIPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYI 228
+P + +++ K +L + LP +L + +G A +RN + + +DY+
Sbjct: 174 PKPITYVPMIDALLRGNFDLFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV 233
Query: 229 RYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
+L++ GV + + +HA KNA++P VT L LQ G L+ G + VF PG+G +Q I
Sbjct: 234 LFLKAKGVPKMRVYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQSI 293
Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
N D+ ++ + + + N ++D+LYAIIDPRVR
Sbjct: 294 QNLDFPVVIAITFIYAIIYVTINLIVDVLYAIIDPRVR 331
>gb|AAC67218.1| (U78968) transmembrane transport protein DppB [Streptococcus
pyogenes]
Length = 325
Score = 134 bits (334), Expect = 1e-30
Identities = 90/318 (28%), Positives = 166/318 (51%), Gaps = 12/318 (3%)
Query: 14 MIYILTFFFAVTI-DFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWE 72
+I +T F V++ F++ + P DP+ ++ +L A + +GLDKP
Sbjct: 12 IIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQ---YKAIAHHYGLDKPALV 68
Query: 73 QYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK 132
QY + K V+ GDLG S+ Y +PV++I++ L+ + + S +G LG L+
Sbjct: 69 QYFIWLKNVIQGDLGTSLVYR-QPVSDIIRSRAGASFILMGLSWILSGLIGFILGTLSAF 127
Query: 133 NK-KLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEF-I 189
++ KL + ++ F +LQ S P FW ++ +F+ +LGWFPI + G +LS + +
Sbjct: 128 HQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIG---TLSQDITL 184
Query: 190 KDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKN 248
D + H LP +L ++ + + R ++ + ++Y+ + + G ++ +I H +N
Sbjct: 185 ADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHHCLRN 244
Query: 249 AMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVL 308
A++P +T G L G+V + VFSYPG+G L + + D L+ ++ L V
Sbjct: 245 AIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVF 304
Query: 309 VANFVIDLLYAIIDPRVR 326
N + D+L +II+P++R
Sbjct: 305 AGNLIADILNSIINPQLR 322
>sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1074012|pir||G64188 transmembrane protein dppB -
Haemophilus influenzae (strain Rd KW20)
>gi|972895|gb|AAA95972.1| (U17295) DppB [Haemophilus
influenzae] >gi|1574114|gb|AAC22840.1| (U32798)
dipeptide ABC transporter, permease protein (dppB)
[Haemophilus influenzae Rd]
Length = 333
Score = 132 bits (330), Expect = 4e-30
Identities = 98/345 (28%), Positives = 166/345 (47%), Gaps = 40/345 (11%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++ ++ ++ I TF I F + +PGDP+ +++ E +H + GL
Sbjct: 3 KFVFKRILMVIPTFIAITLITFALVHFIPGDPVEIMMGERGLTAE----VHQQMMHQLGL 58
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
D PL++QY + V+ GD G S + +PV P L F AL S G L
Sbjct: 59 DLPLYQQYFHYIGNVIQGDFGAS-FRTQQPVLTEFFTLFPATAELAFFALFWSLLGGIIL 117
Query: 127 GALAGKNK-----------KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGW------ 169
G +A K L Y MPIF W+ ++L + +LG
Sbjct: 118 GTIAAVKKDSWISHTVTAASLTGYSMPIF---------WWGLILILYVSPQLGLPQGGRL 168
Query: 170 ---FPISGAYSYGIIPS----LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYE 222
F I + +I S +S F ++ + LP + L V L R+ ++
Sbjct: 169 DNEFWIDTPTGFMLIDSWLSGVSGAF-ENAVKSLILPAIVLGTVPLAIITRMTRSAMLEV 227
Query: 223 IEADYIRYLESLGVS-EKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIG 281
+ DYIR ++ G+S +I++ HA +NA++P VT + L + L++G V + +FS+PGIG
Sbjct: 228 LGEDYIRTAKAKGLSYTRIVIVHALRNALIPVVTVVGLIVAQLLSGAVLTETIFSWPGIG 287
Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
++ I +DY ++QG+ L+I ++V N +DLLY +++PR+R
Sbjct: 288 KWIIDAIQARDYPVLQGSVLIIATIIIVVNLTVDLLYGVVNPRIR 332
>sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TP
>gi|2182646|gb|AAB91869.1| (AE000098) Y4tP [Rhizobium
sp. NGR234]
Length = 313
Score = 132 bits (330), Expect = 4e-30
Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 20/324 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y+LR+ + I F++ R+ PGDP AV+ P AT+ + + + GL+
Sbjct: 4 YILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAG-----PTATEQMVANIREELGLN 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+PL Q++ + VL G+ G S++ PV ++L + L ++L ++ S VG G
Sbjct: 59 EPLPVQFVHWASDVLRGNFGASVFT-GVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFG 117
Query: 128 ALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISG--AYSYGIIPS 183
LA +D L + P F +L Y F + W P+ G + + G+ P
Sbjct: 118 VLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAP- 176
Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILM 242
+ H LP ++L + + A R ++ + DY+R + G S +L
Sbjct: 177 --------WFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLF 228
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
HA KNA +P +T + + ++ G V + VF+ PGIG +++ I N+DY +IQ ++
Sbjct: 229 HHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVL 288
Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
I ++ N ++DL Y +IDPR+R
Sbjct: 289 ISGLYVLINLLVDLAYTLIDPRIR 312
>pir||C64676 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2314415|gb|AAD08295.1|
(AE000630) oligopeptide ABC transporter, permease
protein (oppB) [Helicobacter pylori 26695]
Length = 348
Score = 132 bits (330), Expect = 4e-30
Identities = 100/344 (29%), Positives = 170/344 (49%), Gaps = 30/344 (8%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPE-------------ATK 54
Y+L++ ++ I T +TI+F + + PG PI ++++ A++
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 55 YLHSYFVQ----AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLA 110
L S ++ +G DKP+ E+Y+ K L D G S Y K V +++KE LP ++
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIK-VIDLIKEKLPVSIS 122
Query: 111 LLFPALVASWFVGNWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFK-- 166
L + + + + LG K N+ LD + A P F FA++L F
Sbjct: 123 LGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNY 182
Query: 167 LGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWA---IGMRNMIIYEI 223
WFP+ G S + IKDYL H TLP L + LGG+A + ++N + E+
Sbjct: 183 WHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLC---ISLGGFASLTLLVKNSFLDEM 239
Query: 224 EADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQ-LGLLVAGNVTVQVVFSYPGIG 281
Y+ ++ G S +I H F+NA+L V G LG+ + ++ +++VFS G+G
Sbjct: 240 GKLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLG 299
Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
+ + I+++DY ++ G+ + L LVA+ + DLL +IDPR+
Sbjct: 300 LLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1075747|pir||C53290 oligopeptide transport protein
oppB - Lactococcus lactis subsp. lactis
>gi|308852|gb|AAA16165.1| (L18760) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 131 bits (327), Expect = 1e-29
Identities = 93/327 (28%), Positives = 158/327 (47%), Gaps = 17/327 (5%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+ ++R+ ++ I F + F ++MPGDP + L+ T P + L +A GL
Sbjct: 3 KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPH-TDPHEVEALR----RAAGL 57
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEIL--KEALPYDLALLFPALVASWFVGN 124
P WEQY+ + +HG+LG+S Y +PV ++ + + ++LL L + +
Sbjct: 58 YDPWWEQYLRWLGNAIHGNLGMS-YNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPM 116
Query: 125 WLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS---YGII 181
+ A + K D + P + F +L+ ++F + L WFP G S GII
Sbjct: 117 SIVAARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGII 176
Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL 241
P F K Y H LP SL + G R+ I+ E DY+R + GV EK++
Sbjct: 177 PVF---FSKIY--HMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVI 231
Query: 242 MK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
+ H +NA LP + + L+ G + + +F YPG+G + + I +DY +I
Sbjct: 232 FRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALI 291
Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
L+ + L+ + D++ A++DPR+RI
Sbjct: 292 LLNGFSGLLGALLPDIIMAMVDPRIRI 318
>sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|495179|gb|AAB00535.1| (U09553) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 131 bits (326), Expect = 1e-29
Identities = 93/327 (28%), Positives = 157/327 (47%), Gaps = 17/327 (5%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+ ++R+ ++ I F + F ++MPGDP + L+ T P + L +A GL
Sbjct: 3 KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPH-TDPHEVEALR----RAAGL 57
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEIL--KEALPYDLALLFPALVASWFVGN 124
P WEQY+ + +HG+LG+S Y +PV ++ + + ++LL L + +
Sbjct: 58 YDPWWEQYLRWLGNAIHGNLGMS-YNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPM 116
Query: 125 WLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS---YGII 181
+ A + K D + P + F +L+ ++F + L WFP G S GII
Sbjct: 117 SIVAARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGII 176
Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL 241
P F K Y H LP SL + G R+ I+ E DY+R + GV EK++
Sbjct: 177 PVF---FSKIY--HMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVI 231
Query: 242 MK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
+ H +NA LP + + L+ G + + +F YPG+G + + I +DY +I
Sbjct: 232 FRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALI 291
Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
L+ L+ + D++ A++DPR+RI
Sbjct: 292 LLNGFLGLLGALLSDIIMAMVDPRIRI 318
>gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [Listeria monocytogenes]
Length = 309
Score = 131 bits (325), Expect = 2e-29
Identities = 88/325 (27%), Positives = 157/325 (48%), Gaps = 25/325 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+Y L++ + ++T F ++ F++ + +PG P L + ++ + + +GL
Sbjct: 3 KYTLKRVLYMLITLFIIASVTFVLMKFLPGTPYR----NQEKLSDEQIHMTN---EKYGL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
+ + QY ++ ++ GDLG+S +PV+EIL + + L A+ G L
Sbjct: 56 NDSIPVQYFNYMTGLVKGDLGVSFQLDNRPVSEILSALIGPSVQLALEAMAFGVIFGILL 115
Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G +A + +Y L S P F FA +L Y KL FP++G
Sbjct: 116 GVIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAG---------- 165
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
W D + LP +L M L A MR +I +DY+ ++ G S ++ +K
Sbjct: 166 -WGTFADTI----LPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKGNSRTEVAVK 220
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA +NA++P +T L L+ G++ ++ ++S PGIG + I DY +I G ++
Sbjct: 221 HAIRNALIPLITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYPVIMGTTILF 280
Query: 304 ILTVLVANFVIDLLYAIIDPRVRIS 328
+ ++ V+D+LY +IDPR+R+S
Sbjct: 281 AVMLVFVILVVDILYGLIDPRIRVS 305
>pir||B82356 peptide ABC transporter, permease protein VC0172 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654575|gb|AAF93348.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 342
Score = 130 bits (324), Expect = 2e-29
Identities = 95/334 (28%), Positives = 165/334 (48%), Gaps = 21/334 (6%)
Query: 4 GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA 63
G+ +L+++ ++ F + F I + GDP+ L+ + + E
Sbjct: 17 GMFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAE-----RQALRDE 70
Query: 64 FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
GL+ P +Y F A + GDLG S Y++ +P E++ + L L L+F A +
Sbjct: 71 LGLNDPFIIKYSRFVTAAVQGDLGTS-YFFKRPALEVIFDKLVATLELVFGATLIIIVFS 129
Query: 124 NWLGALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYG-- 179
LG + + K +M + P F AI+L Y+F+ +LGW P SYG
Sbjct: 130 IPLGVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWXP-----SYGRG 184
Query: 180 -IIPSLSWE---FIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLG 235
+ L WE F D L H LP ++L + L + +R+ ++ + ++YI++ ++ G
Sbjct: 185 ETVNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKG 244
Query: 236 VS-EKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYF 294
+ KI +HA KN MLP +T +Q+G +VA + + VF +PG G++ ++ I D
Sbjct: 245 LPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTP 304
Query: 295 LIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
LI + + L +V N ++DLLY +I+P V ++
Sbjct: 305 LITAYVIFVGLIFVVTNTIVDLLYGLINPTVNLT 338
>gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 300
Score = 129 bits (322), Expect = 4e-29
Identities = 89/323 (27%), Positives = 163/323 (49%), Gaps = 29/323 (8%)
Query: 17 ILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYIS 76
I+T F VT+ F + + PG P + PE L++++ GLDKPL+ QY+S
Sbjct: 2 IITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GLDKPLFVQYVS 54
Query: 77 FWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK-NKK 135
+ K+V D G S Y + V +++ P L A++ + +G G +A + K
Sbjct: 55 YLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNK 114
Query: 136 LDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIPSLSWEFIKDY 192
+Y + I S P F A +L Y+F+ KLG FP++G +++Y +PS++
Sbjct: 115 WQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALA----- 169
Query: 193 LHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMKHAFKNAML 251
++P F+ +L R+ +I + +DYIR ++ G+S +++ F+
Sbjct: 170 ----SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFC 217
Query: 252 PQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVAN 311
+ L ++ G+ ++ +F PG+G + I N+DY +I G + + +L+
Sbjct: 218 RLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCV 277
Query: 312 FVIDLLYAIIDPRVRISYTEEGA 334
++D+LY IIDPR+++S ++GA
Sbjct: 278 LIVDVLYGIIDPRIKLSKAKKGA 300
>pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001545|dbj|BAA10172.1| (D64000) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 337
Score = 129 bits (320), Expect = 6e-29
Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 17/329 (5%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y++++ + ++T A + F I ++ PG + L PE + L VQ FGLD
Sbjct: 15 YVVQRLIEGLITLLLASLLSFAIVQLAPGSYLDTLQQNPKISPETLQQLK---VQ-FGLD 70
Query: 68 KPLWEQYISFWK----AVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
+P W Y+ +W+ V + G S + Y + VA +L E +P L L +++ +W +
Sbjct: 71 QP-W--YVQYWRWLTQVVTRFNFGES-FVYNRSVASLLIERIPATLLLAITSIILTWAIA 126
Query: 124 NWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
LG + +N +D L I Y Q P F A+LL +L P+ S
Sbjct: 127 IPLGIVGAVQQNTFIDRSLRVISYIGQGFPSFITALLLLFLAQSVSPLLPVGDMTSIDFA 186
Query: 182 PSLSWEF-IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
SW + D H LP L+L + G MR ++ + DYI+ + G+ E +
Sbjct: 187 -EFSWPHKVWDVAWHMILPTLALSITSFAGLQRLMRGQLLDVLRQDYIQTARAKGLPENR 245
Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
++ HA +NA+ P +T L + L++G + F++PG+G +++Q + QD +L+ G+
Sbjct: 246 VIYVHALRNAINPLITILGFEFASLLSGAFIAEFFFNWPGLGRLILQAVTAQDLYLVMGS 305
Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
++ ++V N + DLL DPR++++
Sbjct: 306 LMMGATLLIVGNLLADLLLKFTDPRIQLA 334
>sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|72438|pir||QREBOB oligopeptide transport system
permease protein oppB - Salmonella typhimurium
>gi|47803|emb|CAA29040.1| (X05491) Opp B (AA1-306)
[Salmonella typhimurium]
Length = 306
Score = 128 bits (318), Expect = 1e-28
Identities = 83/323 (25%), Positives = 156/323 (47%), Gaps = 23/323 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++LR+ + I T F +TI F + R+ PG P A PE + + + L
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERALPPEVLANIEA----KYHL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
+ P+ QY S+ K + HGD G S Y V +++ + P L A + + +G
Sbjct: 56 NDPIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSA 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G +A +N + D +M P F A LL +F L W P G ++ G + +
Sbjct: 116 GVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLP-GGGWNGGALKFM 174
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
LP ++L + + A R +I + +++IR + G+ +I+ +
Sbjct: 175 ------------ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFR 222
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA K A+LP ++ + ++ G++ ++ ++ PGIG + + G +N+DY L+ +++
Sbjct: 223 HALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILV 282
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
++ N ++D+LYA+IDP++R
Sbjct: 283 GALTILFNAIVDVLYAVIDPKIR 305
>sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442404|pir||B36263 oligopeptide transport system
permease protein oppB - Escherichia coli
>gi|1787497|gb|AAC74326.1| (AE000223) oligopeptide
transport permease protein [Escherichia coli K12]
Length = 306
Score = 127 bits (317), Expect = 1e-28
Identities = 83/323 (25%), Positives = 156/323 (47%), Gaps = 23/323 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++LR+ + I T F +TI F + R+ PG P PE + + + L
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERTLPPEVMANIEA----KYHL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
+ P+ QY S+ K + HGD G S Y V +++ + P L A + +G
Sbjct: 56 NDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSA 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G +A +N K D +M + P F A LL +F L W P G ++ G + +
Sbjct: 116 GVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLP-GGGWNGGALKFM 174
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
LP ++L + + A R +I + +++IR + G+ +I+++
Sbjct: 175 ------------ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILR 222
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA K A+LP ++ + ++ G++ ++ ++ PGIG + + G +N+DY L+ +++
Sbjct: 223 HALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILV 282
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
++ N ++D+LYA+IDP++R
Sbjct: 283 GALTILFNAIVDVLYAVIDPKIR 305
>pir||B70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960089|emb|CAA17987.1|
(AL022121) dppB [Mycobacterium tuberculosis]
Length = 308
Score = 126 bits (314), Expect = 3e-28
Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 22/322 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y+ R+ + + F A + + + ++PGDP+A L P L S++ LD
Sbjct: 4 YVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDRPLTPAVAAQLRSHY----HLD 59
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
P QY+ + +LHGDLG + Y PV+ +L A P + L AL +G G
Sbjct: 60 DPFLVQYLRYLGGILHGDLGRA--YSGLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFG 117
Query: 128 ALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
+AG + D+ ++ + A P F L +LF +L P++ + L
Sbjct: 118 VIAGLRQGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIAPVTVGERASVGRLL- 176
Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKH 244
LP + L + R+ + ADY+R + G+S +++ H
Sbjct: 177 ------------LPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRVVTVH 224
Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
+N+++P VT L LG L+ G + + +F+ G+G VL Q + Q+ + V++
Sbjct: 225 ILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIVTVLV 284
Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
L L+ N ++DLLYA +DPR+R
Sbjct: 285 LIYLITNLLVDLLYAALDPRIR 306
>pir||C70141 oligopeptide ABC transporter, permease protein (oppB-1) homolog -
Lyme disease spirochete >gi|2281460|gb|AAC46285.1|
(AF000366) oligopeptide permease homolog B [Borrelia
burgdorferi] >gi|2688245|gb|AAC66724.1| (AE001140)
oligopeptide ABC transporter, permease protein (oppB-1)
[Borrelia burgdorferi]
Length = 306
Score = 126 bits (313), Expect = 4e-28
Identities = 86/322 (26%), Positives = 156/322 (47%), Gaps = 21/322 (6%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
++ L+K + I T + + F + R+ PG P F + + + ++ + L
Sbjct: 3 KFTLKKILGIIPTLLVIIFLCFFVMRMAPGSP-------FDSEKPIDPQVKARLMEKYHL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
DKP + Q + L GDLG S+ V++ +K P L L +L+ S +G +
Sbjct: 56 DKPFYIQAFYYITNALRGDLGPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPI 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G LA KN +D + I + P F +L Y F K G SG
Sbjct: 116 GILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSG---------- 165
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
W + + LP ++L M + +A +R ++ I++D+IR + G+S +KI++K
Sbjct: 166 -WITERGGFSNLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIK 224
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
H + AMLP V+ + +++G+V ++ +F G+G + + +N+DY ++ G LV
Sbjct: 225 HMLRGAMLPVVSYIGPAFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVY 284
Query: 304 ILTVLVANFVIDLLYAIIDPRV 325
+ +L++ + D++Y I+DPRV
Sbjct: 285 SIILLISILISDIIYKILDPRV 306
>pir||A75027 oligopeptide transport permease protein appb PAB1194 - Pyrococcus
abyssi (strain Orsay) >gi|5459169|emb|CAB50655.1|
(AJ248288) OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN APPB
[Pyrococcus abyssi]
Length = 353
Score = 126 bits (313), Expect = 4e-28
Identities = 86/288 (29%), Positives = 140/288 (47%), Gaps = 7/288 (2%)
Query: 49 LPEATKYLHSYFVQAFGLDKPLWEQYISFWKAVLHGDLGI--SIYYYPKPVAEILKEALP 106
L E K + ++A+GLD+P W + I K + D G S + V +I+ A+P
Sbjct: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
Query: 107 YDLALLFPALVASWFVGNWLGALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFT 164
+ L A + F+G LG A K L + + +F + S P +WF ++L LF+
Sbjct: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
Query: 165 FKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
FKL P G S I P + + D L H LP ++ V GGWA RN++I ++
Sbjct: 186 FKLNLLPSGGMTS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQ 243
Query: 225 ADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYV 283
D+I + GV E K++ HA + A P +T L + G + + VF++PG+G +
Sbjct: 244 EDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRL 303
Query: 284 LMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTE 331
I + LI G+ + + L+ + DL Y +DPRV++ ++
Sbjct: 304 YWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQ 351
>dbj|BAA14776.1| (D90763) Oligopeptide transport system permease protein OppB.
[Escherichia coli] >gi|1805525|dbj|BAA16039.1| (D90852)
Oligopeptide transport system permease protein OppB.
[Escherichia coli]
Length = 306
Score = 125 bits (310), Expect = 1e-27
Identities = 82/323 (25%), Positives = 155/323 (47%), Gaps = 23/323 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+++LR+ + I T F +TI F + R+ PG P PE + + + L
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERTLPPEVMANIEA----KYHL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
+ P+ QY S+ K + HGD S Y V +++ + P L A + +G
Sbjct: 56 NDPIMTQYFSYLKQLAHGDFDPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSA 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G +A +N K D +M + P F A LL +F L W P G ++ G + +
Sbjct: 116 GVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLP-GGGWNGGALKFM 174
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
LP ++L + + A R +I + +++IR + G+ +I+++
Sbjct: 175 ------------ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILR 222
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA K A+LP ++ + ++ G++ ++ ++ PGIG + + G +N+DY L+ +++
Sbjct: 223 HALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILV 282
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
++ N ++D+LYA+IDP++R
Sbjct: 283 GALTILFNAIVDVLYAVIDPKIR 305
>gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola]
Length = 341
Score = 124 bits (308), Expect = 2e-27
Identities = 92/327 (28%), Positives = 155/327 (47%), Gaps = 17/327 (5%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFAT---LPEATKYLHSYFVQA 63
RY+ ++ + I FI+ +MPGDPI +L T PE +
Sbjct: 21 RYIFKRLVSIIPVLIIMSVAIFILINLMPGDPILAMLDPEKTKAMTPEERALYIENMRKF 80
Query: 64 FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
G DK E+Y + G+ G SI Y KPV E + + + + ++ +
Sbjct: 81 LGYDKGPVERYFLWMGDTFRGEFGYSIKYN-KPVNEFIGTYIKRSFRINIWGFLLAFLIS 139
Query: 124 NWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS-YGI 180
+G A KN D + + + P F+ A+LL +F + P SG GI
Sbjct: 140 IPVGITAAVKKNSFFDKTVTVLTIVGISLPSFFLALLLIMVFVIFMQILPFSGMSDPRGI 199
Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240
+P W +I LP + + L G +R+ +I +++DYIR + G+SEK+
Sbjct: 200 LPD--WHYI-------ILPVTVVVLTSLVGLIRYVRSAMIEILKSDYIRTARAKGLSEKV 250
Query: 241 LM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
++ +HAF+NA++P VT + L + L G++ V+ +F+YPG+G ++ +D ++Q
Sbjct: 251 VIYRHAFQNALIPVVTLIGLYIPGLFGGSIVVEKIFAYPGMGLLMNYAYGFKDRAVLQTV 310
Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVR 326
L L L+ N ID+ Y ++DPR+R
Sbjct: 311 LLFFGLLTLLGNIFIDVGYMVVDPRIR 337
>dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 314
Score = 123 bits (305), Expect = 4e-27
Identities = 88/322 (27%), Positives = 160/322 (49%), Gaps = 18/322 (5%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
+++R+ + I I F + ++PGDP ++ A P+ T + GL+
Sbjct: 4 FIIRRLLQTIPVLIGVSIIVFSLLHLVPGDPAIMIAGESA--PQQTV---ENIRERLGLN 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
P+ QY ++ V+ GDLG S + +PVA+ + + L L +++ S F+G G
Sbjct: 59 DPVPVQYFNYVSGVIQGDLGTS-FRSGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAG 117
Query: 128 ALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLG-WFPISGAYSYGIIPSL 184
++ + D LM I F + P FW ++L F W P A+ PS
Sbjct: 118 IVSATKRYSFADTSLMIIALFGLSMPNFWLGLMLIQWFAIGYTPWLPFDTAW---FAPS- 173
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM-K 243
W + + LP ++L A R+ ++ + DYIR + GV E++++ +
Sbjct: 174 GWGSFRQIV----LPVITLGTAGAAIVARMTRSSMLEVLHQDYIRTARAKGVKERVVVYR 229
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA KNA++P VT + +Q G L+ G+V + VF+ G+G ++++ I +D+ ++QGA LVI
Sbjct: 230 HALKNALIPVVTVVGIQFGFLLGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQGAVLVI 289
Query: 304 ILTVLVANFVIDLLYAIIDPRV 325
+ + N ++D+ Y ++ R+
Sbjct: 290 SVLFVFVNLLVDITYRFLNKRI 311
>sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJB
>gi|7442459|pir||A64987 hypothetical 40.4 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|1736843|dbj|BAA15986.1| (D90849) Oligopeptide
transport system permease protein OppB. [Escherichia
coli] >gi|1788504|gb|AAC75239.1| (AE000307) putative
transport system permease protein [Escherichia coli K12]
Length = 364
Score = 122 bits (304), Expect = 5e-27
Identities = 100/360 (27%), Positives = 161/360 (43%), Gaps = 46/360 (12%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPI-----AVLLSRFATLP----EATKYLHS 58
YL+R+ ++ I T + +TI+F I +I PG P+ A+ LP E + H+
Sbjct: 4 YLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHA 63
Query: 59 Y------------------------FVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYP 94
+G DKP+ E+Y + D G S++
Sbjct: 64 QTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSA 123
Query: 95 KPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPY 152
V ++K++LP + L + + + V LG + D + A P
Sbjct: 124 S-VLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPA 182
Query: 153 FWFAILLSYLFT----FKLGWFPISGAYSYGIIPSLSW-EFIKDYLHHWTLPFLSLFMVQ 207
F FAILL F F L FP+ G S SL W + I DYL H TLP L+ +
Sbjct: 183 FLFAILLIVFFAGGSYFDL--FPLRGLVSANF-DSLPWYQKITDYLWHITLPVLATVIGG 239
Query: 208 LGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGL-ALQLGLLV 265
+ +N + E+ Y+ + GVSEK IL KH F+NAML + G A + +
Sbjct: 240 FAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFF 299
Query: 266 AGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
G++ ++V+FS G+G + + +++DY ++ G + L L+ N V D+ Y ++DPR+
Sbjct: 300 TGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
>gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; DppB2 [Halobacterium
sp. NRC-1]
Length = 347
Score = 122 bits (303), Expect = 6e-27
Identities = 93/348 (26%), Positives = 152/348 (42%), Gaps = 32/348 (9%)
Query: 6 KRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
KR++L++ ++ + F T F+I + GDP V+L + A + + Q G
Sbjct: 4 KRFILKRLLLLVPVLFGVATFVFVILHLASGDPARVILGQRAPQQQVIQLR-----QELG 58
Query: 66 LDKPLWEQYISFWKAVLHGDLGISIYYYP-KPVAEILKEALPYDLALLFPALVASWFVGN 124
L+ P++ QY F D G S V +L + +P L L +G
Sbjct: 59 LNDPVYVQYARFLVDAAQFDFGQSYSVAQGTAVRSVLADKIPVTLELALYGQAIGILLGI 118
Query: 125 WLGALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
LG ++ + L ++ I S P +W LL F+ LG FP SG I
Sbjct: 119 PLGVISAVEQDTLTDHFGRIGALSGISVPIYWSGPLLILAFSTFLGVFPASGRIESTIFL 178
Query: 183 SLSWEFIKDYLH-----------------------HWTLPFLSLFMVQLGGWAIGMRNMI 219
+ SW L H LP ++ + + + MR+ +
Sbjct: 179 ADSWSLFGVTLPLTGMLTVDTLLLGNVSAWVSAVMHLILPAATIGIYSMALISRMMRSSM 238
Query: 220 IYEIEADYIRYLESLGVSEKI-LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYP 278
+ + DY+R + G KI +MKH F+NA++P +T + +Q G L+ G V + VF
Sbjct: 239 LEVVRQDYMRTARAKGQGSKITIMKHGFRNALVPVITVIGIQFGSLLGGAVLTETVFGIE 298
Query: 279 GIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
GIG +L+ I DY L+QG L L + N ++D+ Y+ +DPR++
Sbjct: 299 GIGTILVSAINANDYPLVQGTVLTFALLFTLVNLLVDVTYSYLDPRIQ 346
>sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|98272|pir||S16648 dipeptide transport system
permease protein dppB - Bacillus subtilis
>gi|580850|emb|CAA40003.1| (X56678) dciAB [Bacillus
subtilis] >gi|2632014|emb|CAA05573.1| (AJ002571) DppB
[Bacillus subtilis] >gi|2633647|emb|CAB13150.1| (Z99110)
dipeptide ABC transporter (permease) [Bacillus subtilis]
Length = 308
Score = 122 bits (303), Expect = 6e-27
Identities = 87/324 (26%), Positives = 156/324 (47%), Gaps = 25/324 (7%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
RY++++ T T+ F++ +++PG P T K L +Y+ L
Sbjct: 3 RYMIKRFWAMAATILVITTLTFVLMKVIPGSPFN---EERGTNEAVQKNLEAYY----HL 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
D PL QYI + K+++ D G SI V ++L+ P L A+V + G L
Sbjct: 56 DDPLIFQYIFYLKSIITFDFGPSIKKPSDSVNDMLERGFPVSFELGMTAIVIAVISGLVL 115
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
G +A +N LD M + + P F A LL F L FP + ++ I
Sbjct: 116 GVIAALRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKLFP-AATWTSPI---- 170
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
H LP +L + + A R+ ++ + DYIR ++ G+S KI++K
Sbjct: 171 ----------HMVLPTAALAVGPMAIIARLTRSSMVEVLTQDYIRTAKAKGLSPFKIIVK 220
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
HA +NA++P +T L + ++ G+ ++ +F+ PG+G ++ I +DY +I G +
Sbjct: 221 HALRNALMPVITVLGTLVASILTGSFVIEKIFAIPGMGKYFVESINQRDYPVIMGTTVFY 280
Query: 304 ILTVLVANFVIDLLYAIIDPRVRI 327
+ +++ F++DL Y ++DPR+++
Sbjct: 281 SVILIIMLFLVDLAYGLLDPRIKL 304
>pir||E72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981607|gb|AAD36141.1|AE001766_7 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 327
Score = 121 bits (301), Expect = 1e-26
Identities = 87/327 (26%), Positives = 162/327 (48%), Gaps = 13/327 (3%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA---- 63
Y+LR+ + +T + I F+I ++ PGD L S A L + + + ++A
Sbjct: 4 YILRRLITAFITLWIISIISFVIIQLPPGD---FLTSYIAQLKVSGEDVDIATIEALKKQ 60
Query: 64 FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
+GLDKP++ QY+ + +LHGD G S + + KPV E+L L + + +L+ SW G
Sbjct: 61 YGLDKPIYVQYLKWLWGILHGDFGYS-FSWKKPVNELLWNRLGVTVLVATLSLIFSWIFG 119
Query: 124 NWLGALAGKNK-KLDNYLMPIF-YFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
+G + + + +YL I Y A P F A++L + + L +SG +S +
Sbjct: 120 FIIGMYSAVHPYSIGDYLATILGYIGLAVPNFLLALILMWGI-YSLTGINLSGLHSVKYL 178
Query: 182 PS-LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
+ ++ + D L+H +P L L + G +R ++ E+ Y+ S G+ E K
Sbjct: 179 NTPMTIDKFLDILNHLWIPVLVLGTSGMAGLIRTLRANLLDELHKPYVEAALSKGLPENK 238
Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
+ K+ + AM+P ++ + L + +G +V + P +G +L+ + NQD +L
Sbjct: 239 VFWKYPLRIAMIPFISTVGWSLPWIFSGATITAIVLNLPSVGPLLLNALKNQDMYLAGSL 298
Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVR 326
+ + ++ + D+L A +DPR+R
Sbjct: 299 VMFLSFFTVIGTLISDILLAWVDPRIR 325
>pir||F83419 probable permease of ABC transporter PA1809 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947793|gb|AAG05198.1|AE004607_4 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 360
Score = 120 bits (299), Expect = 2e-26
Identities = 92/352 (26%), Positives = 155/352 (43%), Gaps = 35/352 (9%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEAT-------------- 53
Y+LR+ ++ + T F + I+FII + PG P+ ++++ A+
Sbjct: 4 YILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGEV 63
Query: 54 --------------KYLHSYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAE 99
L + +G DK E+++ K LH D G S + K V +
Sbjct: 64 AVAGSQYRGAQGLDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAK-VTD 122
Query: 100 ILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAI 157
++ E LP ++L + + + V LG D + A P F FAI
Sbjct: 123 LIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAI 182
Query: 158 LLSYLFT--FKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGM 215
LL LF WFP+ G S + DY H LP +L + +
Sbjct: 183 LLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNFATITLLT 242
Query: 216 RNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGL-ALQLGLLVAGNVTVQV 273
+N + EI Y+ + G++E ++L H F+NAML + GL A LG+ G++ ++V
Sbjct: 243 KNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEV 302
Query: 274 VFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
+FS G+G + + MN+DY ++ G + L LV + D++Y ++DPR+
Sbjct: 303 IFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
>gi|10954943 Probable accD [Agrobacterium tumefaciens]
>gi|6498296|dbj|BAA87748.1| (AB016260) Probable accD
[Agrobacterium tumefaciens]
Length = 308
Score = 120 bits (299), Expect = 2e-26
Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 29/330 (8%)
Query: 1 MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
M+S I L+R ++ +LT VT FII R+ GDP +L AT PEA + F
Sbjct: 1 MISFILARLVRAIIVMMLT----VTFVFIILRL-GGDPARAMLGENAT-PEAL----AAF 50
Query: 61 VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
A+GLD+ + EQ++ + + L GD G+S + V ++ E +P L L A V S
Sbjct: 51 RTAWGLDRSIPEQFLIYLASALRGDFGVSAAD-GREVFTVIAERIPKTLTLTISAFVLSI 109
Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
VG G +A ++ D +M + P F + L ++F P SG
Sbjct: 110 LVGIPAGIIAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSG---- 165
Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
S +W+ H LP + +V A R+ +I +E YI + G+ +
Sbjct: 166 ----SSTWQ-------HAILPVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPK 214
Query: 239 -KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
+++++HA NA +P VT L L+ G+ V+ VF++PG+G ++ I D ++Q
Sbjct: 215 WEVVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQ 274
Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
L+ ++ N ++D+LYA+++P++R+
Sbjct: 275 AMILLFTAFMVTINLIVDVLYAVLNPKIRL 304
>pir||T03433 probable transport protein accD - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153180|gb|AAC17200.1| (AF010180) AccD
[Agrobacterium tumefaciens]
Length = 306
Score = 119 bits (295), Expect = 5e-26
Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 31/330 (9%)
Query: 1 MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
M+S I L+R ++ +LT VT FII R+ GDP +L AT PEA + F
Sbjct: 1 MISFILARLVRAIIVMMLT----VTFVFIILRL-GGDPARAMLGENAT-PEAL----AAF 50
Query: 61 VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
A+GLD+ + EQ++ + + L GD G+S + V ++ E +P L L A V S
Sbjct: 51 RTAWGLDRSIPEQFLIYLASALRGDFGVSAAD-GREVFTVISERIPKTLTLTISAFVLSI 109
Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
VG G +A ++ D +M + P F + L ++F P SG
Sbjct: 110 LVGIPAGIIAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSG---- 165
Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
S +W+ H LP + +V A+ R +I +E YI + G+ +
Sbjct: 166 ----SSTWQ-------HAILPVATFGLVNAAAIALPFR--VIEVLEQPYIAAARADGIPK 212
Query: 239 -KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
+++++HA NA +P VT L L+ G+ V+ VF++PG+G ++ I D ++Q
Sbjct: 213 WEVVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQ 272
Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
L+ ++ N ++D+LYA+++P++R+
Sbjct: 273 AMILLFTAFMVTINLIVDVLYAVLNPKIRL 302
>pir||A71212 probable oligopeptide transport system permease protein appB -
Pyrococcus horikoshii >gi|3258405|dbj|BAA31088.1|
(AP000007) 349aa long hypothetical oligopeptide
transport system permease protein appB [Pyrococcus
horikoshii]
Length = 349
Score = 119 bits (295), Expect = 5e-26
Identities = 79/277 (28%), Positives = 128/277 (45%), Gaps = 11/277 (3%)
Query: 58 SYFVQAFGLDKPLWEQYISFWKAVLHGDLG---ISIYYYPKPVAEILKEALPYDLALLFP 114
+Y+ F LD+P W + + + K + D G I I+ + V I+ ALP + L
Sbjct: 71 AYYRHQFKLDRPYWWRVLYYSKRTIMLDFGNTRIPIFGTERNVKNIISLALPRTILLFTT 130
Query: 115 ALVASWFVGNWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPI 172
A + +G LG A + D L + + P +WF ++ +F FKLGWFP
Sbjct: 131 AQIIVIIIGLLLGVKAAQMVGSAFDRSLSILALVTTSIPMWWFGMMSLLIFAFKLGWFPA 190
Query: 173 SGAYSYGIIPSLSW-EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYL 231
+ P+L+ + D LP ++ V GGWA RN++I ++ D+I
Sbjct: 191 NSMPD----PNLTGLAHVLDVAKRLVLPIFTIVFVLFGGWAWVTRNIMITTMQEDFIMAA 246
Query: 232 ESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMN 290
+ GV E K++ HA + A P VT L + G + + VF++PG+G V I
Sbjct: 247 RAKGVPERKVIYGHALRAAAPPIVTMTIFSLLGSLGGAIITESVFNWPGMGRVYWIAIQT 306
Query: 291 QDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
+ L+ G + + L + D+ Y +DPRVR+
Sbjct: 307 NEINLVMGLTFISVALYLTGVIIADISYGFLDPRVRV 343
>pir||F72720 probable oligopeptide transport system permease protein oppB
APE0303 - Aeropyrum pernix (strain K1)
>gi|5103942|dbj|BAA79258.1| (AP000059) 342aa long
hypothetical oligopeptide transport system permease
protein oppB [Aeropyrum pernix]
Length = 342
Score = 118 bits (294), Expect = 7e-26
Identities = 94/344 (27%), Positives = 164/344 (47%), Gaps = 31/344 (9%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+Y++ + + I T F + FI+ R++ GDP A+ + T PE + + + +
Sbjct: 4 KYIIYRFLSAIPTLFGLSILVFILTRLV-GDPAAIYIHPDMT-PEDVQRVR----ELYHF 57
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
D PL+ QYI + K VL GDLG S+ PV E +K LP L L A S VG +L
Sbjct: 58 DDPLYVQYIYWLKGVLQGDLGYSVTAN-MPVTEAIKSFLPATLELALYAFTLSIIVGVYL 116
Query: 127 G--ALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLF--------------TFKLGWF 170
G A A K+K +D+ + + P FW A++L YLF + +
Sbjct: 117 GTKAAANKDKLIDHLTRLLALSGYSMPVFWLALMLLYLFYNVLDFVGPGRLSLEVRFKYM 176
Query: 171 PISGAYSY--GIIP-----SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEI 223
P G + + G++ + + E D + H P L+ + + + +R+ +I E+
Sbjct: 177 PPYGDFKFYTGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIEEM 236
Query: 224 EADYIRYLESLGVSEKILMK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGY 282
+Y+ + S G+ ++++K + +N+ + V LQ L++G V + VF++PG+G
Sbjct: 237 NKEYVDFALSKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGLGR 296
Query: 283 VLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
+ D + G L + +V N +D+L A +DPR+R
Sbjct: 297 FAANAAIQLDPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIR 340
>pir||F75529 probable peptide ABC transporter, permease protein - Deinococcus
radiodurans (strain R1)
>gi|6458040|gb|AAF09943.1|AE001896_8 (AE001896) peptide
ABC transporter, permease protein, putative [Deinococcus
radiodurans]
Length = 340
Score = 118 bits (294), Expect = 7e-26
Identities = 84/283 (29%), Positives = 136/283 (47%), Gaps = 22/283 (7%)
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
GL P QY + + + GDLG S K V + +KE LP + L + +
Sbjct: 57 GLRDPFPVQYGRWAASAVQGDLGFS-RASGKDVIDTIKERLPNTIELTLLTAIPILLLSV 115
Query: 125 WLGALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFP----------- 171
WLG+L+ NK +D L + + P F I+L +F LGW P
Sbjct: 116 WLGSLSALNKDKFIDQVLRVLTILGYSLPTFVLGIVLLAIFYAYLGWLPGAGQLEVVNQF 175
Query: 172 -------ISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
+G + + + W D + H LP +L +V MRN ++ +
Sbjct: 176 AVSDMKRYTGMLTVDALLNGRWSVAWDVVRHMILPATTLAIVSSADIIKVMRNSMLDVLS 235
Query: 225 ADYIRYLESLGVSEKIL-MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYV 283
+DYIR + G++ ++ KHA +NA+LP +T L + L++G++ + +F+YPGIG
Sbjct: 236 SDYIRTARAKGLTPGVVNRKHARRNALLPVITLGGLLIINLLSGSLITETIFAYPGIGQW 295
Query: 284 LMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
++Q + D + G L+ L V+V N ++D+LY I+DPRVR
Sbjct: 296 VVQSALQIDLAGVLGFALLSALIVVVMNTLVDILYGIVDPRVR 338
>sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
>gi|628818|pir||S39586 peptide transport system permease
protein sapB - Salmonella typhimurium
>gi|414209|emb|CAA52285.1| (X74212) sapB [Salmonella
typhimurium]
Length = 321
Score = 118 bits (293), Expect = 9e-26
Identities = 87/335 (25%), Positives = 148/335 (43%), Gaps = 46/335 (13%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
+ LR+ ++ ++T FF I F + P P+
Sbjct: 4 FTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQ--------------------------G 37
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
LW ++ ++ +LH D G+S + ++E LKE P + L A + VG +G
Sbjct: 38 ASLWNAWVFWFNGLLHWDFGVSSIN-GQLISEQLKEVFPATMELCILAFGFALMVGIPVG 96
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--YGIIPS 183
+AG ++K D ++ + + P FW A+LL+ F+ LGW P+SG + Y + P
Sbjct: 97 TVAGVTRSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPV 156
Query: 184 LSW--------------EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
+ E + + H LP L+L + MR I + +Y++
Sbjct: 157 TGFAIIDAWISDCPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVK 216
Query: 230 YLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
+ G+S IL +H NA+ P + L LQ ++ + ++VFS+PG+G L+ I
Sbjct: 217 AAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAI 276
Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
QDY I +VI V+V N + D+L A+ +P
Sbjct: 277 RQQDYAAISAGVMVIGSLVIVVNVISDILGAMANP 311
>pir||D75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460715|gb|AAF12420.1|AE001863_45
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 328
Score = 118 bits (293), Expect = 9e-26
Identities = 90/330 (27%), Positives = 159/330 (47%), Gaps = 19/330 (5%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y LR+ + I T + F++ ++ PG + ++ P +K + + GLD
Sbjct: 9 YTLRRILGMIPTLLVISVLCFLVIKLQPGS----FIDQYLEDPRFSKETVANITRQLGLD 64
Query: 68 KPLWEQYISFWKAVLHG-DLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
+P W+QY+++ V+ D G S + PV I+ E L + + + L +W + L
Sbjct: 65 QPAWKQYLNWITGVVTRLDFGYS-FASGAPVTSIIGERLGWTVFIAALTLALTWLIAVPL 123
Query: 127 GALAGKNK-----KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
G N+ ++ N+L Y A P F A+LL L +LG + G + +I
Sbjct: 124 GIYTAFNRYGIPAQIANFLG---YVGLAIPDFLAALLLVVLVR-QLGGTNVGGLFRPDMI 179
Query: 182 PSLSWEFIK--DYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE- 238
+ W F K D L H +P L++ + + G MR + + DYIR ++ G+ +
Sbjct: 180 DA-PWSFAKVLDLLAHLWIPVLAVGLEGVAGLMRQMRASTLDVLSQDYIRTAKAKGLPQG 238
Query: 239 KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
+++ KHA +NA+ P ++ L L L++G + + +V S P IG +L ++N+D +
Sbjct: 239 RVIWKHAVRNAINPLISLAGLSLPTLISGTIIISIVMSLPTIGPLLYDSLLNKDQYTAMT 298
Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
++ +L+ N + DL A DPRVR S
Sbjct: 299 LLMLSAFLLLIGNLLSDLALAWADPRVRYS 328
>pir||C71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328605|gb|AAC67791.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 313
Score = 117 bits (290), Expect = 2e-25
Identities = 93/334 (27%), Positives = 153/334 (44%), Gaps = 36/334 (10%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIA-----VLLSRFATLPEATKYLHSYFVQ 62
Y+ R+ + +L+ + VT+ F I + +PGDP +L S L +
Sbjct: 4 YIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFNDENGNILSSETLALLK----------N 53
Query: 63 AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
+GLDKPL+ QY+ + K +L D G S+ Y + V I+ ALP L +L S F
Sbjct: 54 RYGLDKPLFTQYLIYLKCLLTLDFGESLIYKDRTVISIIAAALPSSAILGLESLCLSLFG 113
Query: 123 GNWLGALAGKNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPIS--GAYSYG 179
G LG LA KK + +Q S P F L Y+F K PI+ G +S+
Sbjct: 114 GITLGILAAFYKKSCGRTIFFSSVIQISVPAFVIGAFLQYVFAIKYSCLPIACWGNFSHT 173
Query: 180 IIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE- 238
++PS++ F+ QL ++ ++ DY+ + G+S
Sbjct: 174 LLPSIALAITP-----------MAFITQLTCASVSAN------LKKDYVLLAYAKGLSPF 216
Query: 239 KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
K+L+KH A+ P ++ A + L+ G +++ +F PG+G + I +DY + G
Sbjct: 217 KVLIKHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPITLG 276
Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVRISYTEE 332
+ ++ + DLL A IDP++R SY +E
Sbjct: 277 LSVFYGAFFMLTSLCCDLLQAWIDPQIRYSYGKE 310
>pir||E72107 peptide ABC transporter, permease protein CP0568 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376470|gb|AAD18352.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189480|gb|AAF38387.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39] >gi|8978572|dbj|BAA98409.1| (AP002545)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 314
Score = 116 bits (288), Expect = 4e-25
Identities = 83/333 (24%), Positives = 156/333 (45%), Gaps = 34/333 (10%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA---- 63
Y+ + + +L+ + +T+ F++ + +PGDP E L +Q
Sbjct: 4 YIKNRILFNLLSLWIVLTLTFLVMKTIPGDPFN---------DEGCNVLSEEVLQTLKSR 54
Query: 64 FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
+GLDKPL++QY + ++ D G S+ Y + V I+ A P L +L S G
Sbjct: 55 YGLDKPLYQQYTQYLHSIAKLDFGNSLVYKDRKVTNIISTAFPISAILGLQSLFLSIGGG 114
Query: 124 NWLGALAG-KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPIS--GAYSYGI 180
LG +A K KK Y++ + P F FA LL Y+F K+ PI+ G++++ I
Sbjct: 115 IALGTIAALKKKKQRRYILGASILQISIPAFIFATLLQYVFAVKIPLLPIACWGSFTHTI 174
Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
+P+L+ F++QL + + + DY+ + G+S K
Sbjct: 175 LPTLALAVTP-----------MAFIIQL------TYSSVSAALNKDYVLLAYAKGLSPLK 217
Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
+++KH A+ P ++ A ++ G ++ +F PG+G + I +DY + G
Sbjct: 218 VVIKHILPYAIFPTISYSAFLTTTVITGTFAIENIFCIPGLGKWFICSIKQRDYPVALGL 277
Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRISYTEE 332
+ ++++ + DL+ +IIDP++R ++ +E
Sbjct: 278 SVFYGTLFMLSSLLSDLIQSIIDPQIRYAHGKE 310
>sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
>gi|7449120|pir||H64877 peptide transport system
permease protein sapB - Escherichia coli
>gi|1279401|emb|CAA65938.1| (X97282) SapB protein
[Escherichia coli] >gi|1742115|dbj|BAA14854.1| (D90767)
Peptide transport system permease protein SapB.
[Escherichia coli] >gi|1742124|dbj|BAA14863.1| (D90768)
Peptide transport system permease protein SapB.
[Escherichia coli] >gi|1787550|gb|AAC74375.1| (AE000227)
homolog of Salmonella peptide transport permease protein
[Escherichia coli K12]
Length = 321
Score = 116 bits (287), Expect = 5e-25
Identities = 86/335 (25%), Positives = 146/335 (42%), Gaps = 46/335 (13%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
+ LR+ ++ I+T F + F + P P+
Sbjct: 4 FTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQ--------------------------G 37
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
LW ++ ++ ++H D G+S +P+AE LKE P + L A + VG +G
Sbjct: 38 ASLWNAWVFWFNGLIHWDFGVSSIN-GQPIAEQLKEVFPATMELCILAFGFALIVGIPVG 96
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--YGIIPS 183
+AG ++K DN + I + P FW A+LL+ + LGW P+SG + Y + P
Sbjct: 97 MIAGITRHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPI 156
Query: 184 LSW--------------EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
+ E I + H LP ++L + MR I + +Y++
Sbjct: 157 TGFALIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVK 216
Query: 230 YLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
+ G+S IL +H NA+ P + L LQ ++ + ++VFS+PG+G L+ I
Sbjct: 217 AAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI 276
Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
QDY I +V V++ N + D+L A+ +P
Sbjct: 277 RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANP 311
>gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S77573
oligopeptide transport protein homolog ophB -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215732|gb|AAC44509.1| (AF242881) ophB
[Agrobacterium tumefaciens]
Length = 334
Score = 115 bits (284), Expect = 1e-24
Identities = 91/327 (27%), Positives = 157/327 (47%), Gaps = 16/327 (4%)
Query: 4 GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA 63
G+ +LL++ + ++ FI ++PGD +L R AT P A L +
Sbjct: 19 GLALHLLKRVAAGLGLLLVLSSLIFIGSTLLPGDAATAILGRSAT-PAALAELR----ER 73
Query: 64 FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
GL++PL +Y+S+ A +HGDLG S+ + VA+ + L L L + + +
Sbjct: 74 LGLNEPLIVRYMSWLNAFVHGDLGSSLIN-GRSVADSIGARLGNTLFLAASVALVAVPLA 132
Query: 124 NWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
+LG L+ + + LD + + A P F+ LL Y+ + LGWF A S +
Sbjct: 133 VFLGVLSVRYRGRVLDRTIALVTRTFVALPEFFIGYLLIYILSVSLGWF----ASSSTVF 188
Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KI 240
+ + D + LP L+L V G +R ++ +E +I GVS +
Sbjct: 189 ARMGFA---DRVVAIALPCLTLVFVVTGHITTMVRASVLDVMERPFIEMAALKGVSHGAV 245
Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
+ +HA NA+ P + + + L LVAG V V+V+F YPGIG ++ ++N+ ++Q
Sbjct: 246 VWRHALPNALSPIINVVLVNLAYLVAGVVVVEVIFVYPGIGQYMVDSVVNRHVPVVQATA 305
Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
L+ + N D+L + +PR+R+
Sbjct: 306 LLFAGVYIGLNLCADVLSVLANPRLRL 332
>pir||F81699 peptide ABC transporter, permease protein TC0472 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190513|gb|AAF39320.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 314
Score = 114 bits (283), Expect = 1e-24
Identities = 88/329 (26%), Positives = 154/329 (46%), Gaps = 26/329 (7%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y+ ++ + +L+ + VT+ F I R +PGDP + + + + + +GLD
Sbjct: 4 YIKKRLLFNLLSLWVVVTLTFFIIRTIPGDPFNDENGNVLS-----EEILAILNKRYGLD 58
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
KPL+ QY+ + K +L D G S+ Y + V I+ ALP L +L + F G LG
Sbjct: 59 KPLFTQYLIYLKCLLTLDFGESLIYKDRTVIGIITTALPSSAILGLESLCLALFGGITLG 118
Query: 128 ALAGKNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPIS--GAYSYGIIPSL 184
LA K+ + +Q S P F L Y+F K PI+ G +S+ ++PS+
Sbjct: 119 ILAAFYKRGCGRTIFFSSIIQISVPAFVIGAFLQYIFAIKYSLLPIACWGDFSHTLLPSI 178
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
+ F+ QL ++ ++ DY+ + G+S K+L+K
Sbjct: 179 ALAIAP-----------MAFITQLTYASVSA------SLKKDYVLLAYAKGLSPLKVLIK 221
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
H A+ P ++ A + L+ G +++ +F PG+G + I +DY + G +
Sbjct: 222 HVLPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPMTLGLSVFY 281
Query: 304 ILTVLVANFVIDLLYAIIDPRVRISYTEE 332
++ + + DLL A IDP++R SY +E
Sbjct: 282 GAFFMLISLLCDLLQAWIDPQIRYSYGKE 310
>gb|AAC18097.1| (AF058302) membrane protein of putative ABC transporter
[Streptomyces roseofulvus]
Length = 323
Score = 113 bits (281), Expect = 2e-24
Identities = 100/324 (30%), Positives = 148/324 (44%), Gaps = 22/324 (6%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLH--SYFVQAF 64
RYL R+ +L + A T+ F + ++PGDP+ +LS A A H
Sbjct: 4 RYLARRLGRVVLVVWAAYTLSFAVLYLLPGDPVQTMLSGAAGGDGAAVDPHEAQRLRHTL 63
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
GLD+PL QY S L GDLG SI PV L +ALP L++ PALV S V
Sbjct: 64 GLDRPLAVQYTSMLGHALRGDLGTSI-RSGAPVRGQLAQALPDTLSVALPALVLSVLVAL 122
Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
L L + + L + A P FW +LL+ +F+ G P +G G P
Sbjct: 123 CLALLGAWPRRRALRRAATALPSLGTAMPSFWLGLLLAQWVSFRWGLLPATGG---GRSP 179
Query: 183 SLSWEFIKDYLHHWTLPF-LSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KI 240
+ L TL + + Q+ G + + E AD R S G ++
Sbjct: 180 RAT------LLAALTLALPIGCVLAQVLGRGL---RAALAEPYADVAR---SRGAGRARL 227
Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
L+ A +NA + + L + G L+AG V V+ VF+ GIG + M + QD ++QG
Sbjct: 228 LLARALRNASVAALALLGVVCGQLLAGAVLVETVFARGGIGRLAMDAVTYQDLPVVQGVV 287
Query: 301 LVIILTVLVANFVIDLLYAIIDPR 324
++ L + N V+DLL +++PR
Sbjct: 288 VLAALVAALVNLVVDLLLPLLEPR 311
>sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1283C
>gi|7442425|pir||G70771 probable peptidetransport system
permease - Mycobacterium tuberculosis (strain H37RV)
>gi|1322407|emb|CAA97749.1| (Z73419) oppB [Mycobacterium
tuberculosis]
Length = 325
Score = 112 bits (278), Expect = 5e-24
Identities = 88/331 (26%), Positives = 159/331 (47%), Gaps = 17/331 (5%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
RYL R+ + Y++ A + + + + P+ L+ R P+A ++ + GL
Sbjct: 3 RYLARRLLNYLVLLALASFLTYCLTSLA-FSPLESLMQRSPRPPQAVIDAKAHDL---GL 58
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
D+P+ +Y ++ + GD G +I +PV L + L LL V G +
Sbjct: 59 DRPILARYANWVSHAVRGDFGTTIT--GQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVI 116
Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGW------FPISGAYSY 178
GA + + D + + + ++P F A LL L ++ W F +G S
Sbjct: 117 GAWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLL-ILGALRVNWAVGIQLFDYTGETSP 175
Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
G+ + W+ + D L H LP L+L + G++ RN ++ + D+IR + G++
Sbjct: 176 GVAGGV-WDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTR 234
Query: 239 K-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
+ L+KH + A++P T A + LV G V V+ +F + G+G +++GI QD ++
Sbjct: 235 RRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVA 294
Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
+ VL+A + D++YA +DPRVR+S
Sbjct: 295 AITVFSGAVVLLAGLLSDVIYAALDPRVRVS 325
>pir||T34758 oligopeptide transport system integral membrane protein -
Streptomyces coelicolor >gi|3402245|emb|CAA20181.1|
(AL031184) oligopeptide transport system integral
membrane protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 112 bits (277), Expect = 7e-24
Identities = 94/349 (26%), Positives = 161/349 (45%), Gaps = 38/349 (10%)
Query: 1 MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
M++ + R L ++ ++ I F++P+ G IA+ P A + +
Sbjct: 1 MLAYLIRRLFAAAVMLVVIILVVFCIFFLVPK-WAGVDIALNFVGKQADPAAVEGVR--- 56
Query: 61 VQAFGLDKPLWEQYISFWKAVLHGDL---GISIYYYPKP-----------VAEILKEALP 106
+ GL P++ Q F+K + G G + + P V +L E P
Sbjct: 57 -EKLGLGDPVFVQAWEFFKGIFAGRTYAAGGDVTHCAAPCFGYSFKTEQSVWPVLTERFP 115
Query: 107 YDLALLFPALVASWFVGNWLGALAGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFT 164
LAL A V G G L+ + D M + + P ++ +L +F+
Sbjct: 116 VTLALALGAAVLWLIFGVAAGVLSALKRGTLWDRGAMVVALAGVSLPIYFTGLLSLAIFS 175
Query: 165 FKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWT----LPFLSLFMVQLGGWAIGMRNMII 220
+ LGW I G + +P ++D L W LP+++L + +A R ++
Sbjct: 176 YGLGW--IDGEF----VP------LEDSLTGWLGGMILPWITLAFLYAAMYARITRATML 223
Query: 221 YEIEADYIRYLESLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPG 279
+ DYIR + G+ E++++ KHA ++ + P +T L + LG L+ G + + FS PG
Sbjct: 224 EILGEDYIRTARAKGLKEQVVISKHAMRSTLTPLLTMLGMDLGALMGGAILTETTFSLPG 283
Query: 280 IGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
+G ++ I N D I G L+ L VL+AN V+D+LYA+IDPRVR++
Sbjct: 284 LGQKVLDAIKNHDLPFILGVVLITSLAVLIANLVVDILYAVIDPRVRLA 332
>pir||F82377 ABC transporter, permease protein VCA1099 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658546|gb|AAF96991.1| (AE004435) ABC transporter,
permease protein [Vibrio cholerae]
Length = 318
Score = 112 bits (277), Expect = 7e-24
Identities = 88/313 (28%), Positives = 152/313 (48%), Gaps = 31/313 (9%)
Query: 25 TIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA----FGLDKPLWEQYISFWKA 80
T+ FI+ R +PGD + R A Y+++ A GLD+ +E Y+ +
Sbjct: 21 TLTFILMRFIPGD----VAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELYLQWLWD 76
Query: 81 VLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK--NKKLDN 138
+LH +LG S+ +PV + L + L L A + S F+ +G GK ++ DN
Sbjct: 77 LLHLNLGHSLVS-SEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRWADN 135
Query: 139 YLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAY--SYGIIPSLSWEFIKDYLHHW 196
+ ++A P F + L LF +L W P++G + I+P+L+
Sbjct: 136 LALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLILPALA----------- 184
Query: 197 TLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMKHAFKNAMLPQVT 255
L+L M + I RN +++ Y + G++ E+ +HA +N LP +
Sbjct: 185 ----LALGMAAMSSRMI--RNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMA 238
Query: 256 GLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVID 315
+ +Q LV G V ++ +FS+PG+G+ L I +D +IQG+ LV+ L + N ++D
Sbjct: 239 FVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVD 298
Query: 316 LLYAIIDPRVRIS 328
L+ +DPR+R+S
Sbjct: 299 LVQYALDPRLRLS 311
>gb|AAC69838.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 311
Score = 111 bits (275), Expect = 1e-23
Identities = 78/324 (24%), Positives = 151/324 (46%), Gaps = 24/324 (7%)
Query: 5 IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
+KR L ++ +++F + F++ I +P +L T P T L + + +
Sbjct: 6 LKRIALMFPLMIVVSF-----MTFLLTYITNENPAVTILHAQGT-PNVTPELIAETNEKY 59
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
G + PL QY ++ + + G S Y PVAE + A L L + V
Sbjct: 60 GFNDPLLIQYKNWLLEAMQFNFGTS-YITGDPVAERIGPAFMNTLKLTIISSVMVMITSI 118
Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
LG ++ + K D + + +FL A P +W A +L + KL P SG
Sbjct: 119 ILGVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGP---- 174
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
+ LP + + + G + +R ++ ++ DY+ YL + GV LM
Sbjct: 175 -----------ESYILPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLM 223
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
H +NA+ V+ + + +++ G V ++ +F++PG+G + ++ I+ D+ +IQ L+
Sbjct: 224 LHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLI 283
Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
+ + +V N + D++ A+++PR+R
Sbjct: 284 VAVLFIVFNTLADIINALLNPRLR 307
>gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1]
Length = 315
Score = 111 bits (275), Expect = 1e-23
Identities = 89/324 (27%), Positives = 163/324 (49%), Gaps = 26/324 (8%)
Query: 14 MIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQ 73
M+ I +F V I F GDP+A L + P + LH+ V+ LD+PL ++
Sbjct: 4 MMLIASFLMFVVISF------SGDPLAGL--KTMQPPPPPEVLHAMAVK-LRLDQPLLDR 54
Query: 74 YISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG---NWLGALA 130
Y + + GD G SI+ AE++K L L LL +V ++ + + +GA+
Sbjct: 55 YWMWLSGLFVGDFGPSIHNIDIG-AELVKR-LGVSLRLLALGIVLAFLMAVAASVIGAVL 112
Query: 131 GKNKKLDNYLMPIFYFLQASPYFWFAILLSYL-------FTFKLGWFPISGAYSYGIIPS 183
+ D+ + + + + P FW A+ L L F+L + GA G+ S
Sbjct: 113 -QFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQELGFRLLYTSGDGA---GMTAS 168
Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILM 242
W+ + + LP ++L M G W+ R +I + ++Y++ + G+SE ++++
Sbjct: 169 TPWDRVLLLIGVLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVL 228
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
H + ++ P +T +A +++ +V + VF + G+G +L+ GI N D +++ G LV
Sbjct: 229 AHGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLV 288
Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
L ++V N + D+LYA++DPR+R
Sbjct: 289 AGLIIMVFNLIADILYAVLDPRIR 312
>gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; DppB1 [Halobacterium
sp. NRC-1]
Length = 363
Score = 111 bits (274), Expect = 2e-23
Identities = 99/359 (27%), Positives = 168/359 (46%), Gaps = 35/359 (9%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF--G 65
Y+ ++ ++ + F +T+ F+I + P DP+ +L + AT P A + L + G
Sbjct: 6 YIAKRLLLGVPVLLFGLTLTFLILYLGPIDPVLAILGKDAT-PTAARNLEISLGIRYPNG 64
Query: 66 LDKPLWEQYISFWKAVLHGDLGIS-IYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
PLW QY +F ++ D G S +PVA ++ LP + L F +++ + FVG
Sbjct: 65 SLVPLWVQYKNFLVNMVTFDFGTSWAIARDQPVAAMIVGRLPATIWLGFWSVLVALFVGI 124
Query: 125 WLGALAGKNKKLDNYLMPIFYFL--QASPYFWFAILLSYLFTFK-----LGWFPI----- 172
+G AG N + F + +A P FW A++LS L T G F I
Sbjct: 125 PVGLYAGLNSNSWSDYAASFGGIVWRAMPNFWLAVMLSGLLTAGGVLDGYGDFLIKTDVV 184
Query: 173 ----------SGAYSYGIIPSLSWEFIK-------DYLHHWTLPF-LSLFMVQLGGWAIG 214
SG + +P L + +I W LP L L +G
Sbjct: 185 GTSNALQHLFSGIDPFAGVPVLEFFWIPVPNLGPMAEAFKWILPAALVLGSSSMGNEVRI 244
Query: 215 MRNMIIYEIEADYIRYLESLGVS-EKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQV 273
R ++ + ++Y+ ++ GVS +I++KH +NA++P + + + LL+ G+V V+
Sbjct: 245 GRTAVLESLRSEYVDTAKAKGVSPRRIIVKHIGRNAVIPLLPVIMGEFYLLIGGSVLVEK 304
Query: 274 VFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTEE 332
VFS GIG + ++ N D ++ + IL ++ N + D+LY IDPR+ +S T E
Sbjct: 305 VFSINGIGNLFIRAAFNSDIPVMMSLVFIFILMQILFNLLQDVLYTYIDPRITLSDTTE 363
>gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 323
Score = 111 bits (274), Expect = 2e-23
Identities = 86/312 (27%), Positives = 148/312 (46%), Gaps = 11/312 (3%)
Query: 14 MIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQ 73
+I +L A T FI+ P DPI + L ++ +GLD+PLWE+
Sbjct: 11 LIILLVLVAAGT--FILLSFSPVDPIRAYIGN--DLLHVPPEQYARIAARWGLDQPLWER 66
Query: 74 YISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK- 132
+ ++ +L GD+G S+ + PVA +++E ALL A + S +G LG LAG+
Sbjct: 67 FGHWFWRLLQGDMGYSMLFN-MPVASVIRERFATSFALLAGAWLLSGVLGVTLGFLAGRF 125
Query: 133 -NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKD 191
++ D + I Y L + P FW A +LS L P+ A+ G + + +
Sbjct: 126 LHRWPDKMICRISYLLSSLPTFWIA-MLSGAVCRPLAVLPVCCAWDPG--NNAGTALLSE 182
Query: 192 YLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKH-AFKNAM 250
L H LP +L ++ +G A+ R I +++++IR+ + G L++H ++A+
Sbjct: 183 RLRHLVLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARAQGDKGWSLLRHQVLRHAI 242
Query: 251 LPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVA 310
P + LG L+ G + + VF+YPG+G + + D L+ G L L V
Sbjct: 243 TPALCLQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFCTLLVFAG 302
Query: 311 NFVIDLLYAIID 322
N + L +++
Sbjct: 303 NTISAWLVVVLN 314
>gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB-1) [Sulfolobus
solfataricus]
Length = 348
Score = 110 bits (273), Expect = 2e-23
Identities = 83/347 (23%), Positives = 168/347 (47%), Gaps = 25/347 (7%)
Query: 4 GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLS----RFA-TLPEATKYLHS 58
G Y+++K +IY +TI +I + + IA ++ +F+ TL + L+S
Sbjct: 2 GFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLNS 61
Query: 59 YFVQ------------AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKP-----VAEIL 101
+Q A+GL++P+ ++Y ++ D G + Y+ P V+ I+
Sbjct: 62 TQIQIAVEKYRESLIAAYGLNQPIIDKYFIQMYNLMRFDFGTA-YFLQAPSGSREVSSII 120
Query: 102 KEALPYDLALLFPALVASWFVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSY 161
LP + L A + G +G L+ K+K + + I + P +W +L
Sbjct: 121 AYYLPNTILLFTTATIVFIVAGTIIGLLSAKSKFWEKVIAIIAVIHSSIPTWWLGFVLIA 180
Query: 162 LFTFKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIY 221
+ + FP G S P +++ L+H LP +++F+V +GG+A +R+++
Sbjct: 181 ALAYAVKVFPPGGMTSVPP-PKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTS 239
Query: 222 EIEADYIRYLESLGV-SEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGI 280
++ D++ ++ G+ + +IL +H ++ T L L + G++T +VVF +PG+
Sbjct: 240 IMKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGV 299
Query: 281 GYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
G + I D +I G V+ + +L+ F+ +L+Y ++DPR+++
Sbjct: 300 GLLTYVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIKV 346
>dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 310
Score = 110 bits (272), Expect = 3e-23
Identities = 79/323 (24%), Positives = 148/323 (45%), Gaps = 19/323 (5%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y++++ I F + F+ + P DP V+L +P T L + Q GLD
Sbjct: 4 YVMKRLFSVIPLLFIISFLTFVFINLSPLDPAEVVLQAQG-VPTITDELIAQTKQELGLD 62
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+P QY + A L D G S Y +PV+ I+ A L L + + + LG
Sbjct: 63 QPFLIQYFHWLLACLQLDFGHS-YVTKEPVSAIIGPAFFNTLKLTLVSSIVIIVLSILLG 121
Query: 128 ALAGKN--KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
+ K +D + + L P + A + + F+ KL P SG SY
Sbjct: 122 VICAMKGGKAIDKSIRGFSFLLMGIPSYLLASFMIWYFSVKLDLLPTSGLDSY------- 174
Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKHA 245
+ LP + +G + +RN ++ + D++ Y + G+SEK + H
Sbjct: 175 --------QSYILPVTVITASYVGIYFRSVRNSMLSHLNEDFVLYGRACGISEKKVTIHI 226
Query: 246 FKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIIL 305
+N++ ++ + + ++ G V V+ VF++PG+G + ++ I+N+D+ +IQ L++ +
Sbjct: 227 LRNSLQVAISIFCMGIPTILGGTVVVENVFAWPGLGSLSVKSILNRDFPIIQAYVLILAV 286
Query: 306 TVLVANFVIDLLYAIIDPRVRIS 328
+ + N D++ A ++P+ R S
Sbjct: 287 SFVFFNTFSDIINAAMNPKQRKS 309
>gi|10954708 hypothetical ABC-transporter gene~similar to agaB gene
[Agrobacterium rhizogenes] >gi|8918708|dbj|BAA97773.1|
(AB039932) hypothetical ABC-transporter gene~similar to
agaB gene [Agrobacterium rhizogenes]
>gi|10567372|dbj|BAB16181.1| (AP002086) hypothetical
ABC-transporter gene~similar to agaB gene [Agrobacterium
rhizogenes]
Length = 319
Score = 109 bits (271), Expect = 4e-23
Identities = 87/344 (25%), Positives = 160/344 (46%), Gaps = 53/344 (15%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
R LL+ +I +L F I F + R++PGDP +++ A P+A + + + GL
Sbjct: 2 RRLLQGGLIILLVIF----IIFTLLRVVPGDPARLIVGGMA--PDAVVAMKA---KELGL 52
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKP-------------------VAEILKEALPY 107
D+ + Q++S+ + GDLG S + PK V +++ LP
Sbjct: 53 DRAIPLQFVSYLGHLATGDLGTS-FVRPKSGASLAGSAYNDPTREERAKVLDLILGTLPM 111
Query: 108 DLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTF 165
L L ALV + V LG G + + D + + ++P FW I+L+ +
Sbjct: 112 TLQLAAVALVIALLVAVPLGLAGGLYQGRWPDKLALALGSIFVSTPNFWLGIVLTLFLSV 171
Query: 166 KLGWFPISG--AYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEI 223
KL P G + Y I+P++ + V++ + + + + ++
Sbjct: 172 KLRVLPAIGYNGFEYTILPAI------------------VLAVEIAPFILRTLTVSVAQV 213
Query: 224 -EADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIG 281
D+I+ G+S + + H N+ +P + L +QLG+L+ G + V+ +F YPG+G
Sbjct: 214 LREDFIQLAAVRGLSRGRTIFSHVLGNSAVPLINLLGVQLGMLLGGVLVVEFIFDYPGLG 273
Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
+ + + +D+ LIQG + I + +V N ++DL+ IDPR+
Sbjct: 274 LLTINAVQQRDFPLIQGVAIFISVMFVVINILVDLIAMTIDPRL 317
>gb|AAC69843.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 328
Score = 109 bits (269), Expect = 6e-23
Identities = 87/326 (26%), Positives = 160/326 (48%), Gaps = 25/326 (7%)
Query: 5 IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
I + +L + M I+ F T+ FI+ ++ PG+P+ +L +T+ +++
Sbjct: 3 IIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKIL-HLDVAQVSTEQINA-TKDKL 60
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
GL+ L Q+ + +LH +LG S + +PV +IL P L + F LV S +
Sbjct: 61 GLNDSLLVQWWHWMNHLLHFNLGKS-FESKEPVTQILFNYAPITLLISFSTLVVSLCISI 119
Query: 125 WLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
LG +A K +K D + I + P F+ I+L ++ T + I
Sbjct: 120 PLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMN------------ID 167
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
S+ L + LP ++L + +R+ ++ ++++ ++ G++E+ ++
Sbjct: 168 SV-------ILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYIL 220
Query: 243 KH-AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
H K +LP + L + LG L+ G V ++ +F PGIGY+LM I ++DY +IQG L
Sbjct: 221 IHDLLKPTILPIIPLLGISLGSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVL 280
Query: 302 VIILTVLVANFVIDLLYAIIDPRVRI 327
I V++ N + DLL ++DP+ R+
Sbjct: 281 FIGFFVVIINTIADLLTLLLDPKQRL 306
>gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB-2) [Sulfolobus
solfataricus]
Length = 333
Score = 108 bits (268), Expect = 8e-23
Identities = 76/333 (22%), Positives = 156/333 (46%), Gaps = 16/333 (4%)
Query: 4 GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMP---GDPIAVLLSRFATLPEATKYLHSYF 60
G Y +++ + I+ V + + + +P G A+ + L ++ Y +
Sbjct: 7 GFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNII 66
Query: 61 ---VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALV 117
+G ++PL+ Q+I + A+ +LG ++ + E+L + LPY + L P +
Sbjct: 67 NDITTLYGFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVL-QYLPYTIILTLPPFI 125
Query: 118 ASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
+ +GA A +NK +D+ + P F+ +L +F + PISG
Sbjct: 126 FQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAIPISG- 184
Query: 176 YSYGIIPSLSWEFIKDYLHHWTLPFL-SLFMVQLGGWAIGMRNMIIYEIEADYIRYLESL 234
I L I L + LP++ +F+ I MRN ++ +++D+++Y
Sbjct: 185 -----IQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLS 239
Query: 235 GVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYF 294
G+ E + A +N+++P +T + L ++ G ++ +F PG+GY+ + +
Sbjct: 240 GLKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIP 299
Query: 295 LIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
L+ G+F + L LV + +DL+Y ++DPR+++
Sbjct: 300 LLTGSFFFLTLYALVVLYAMDLIYPLVDPRIKL 332
>pir||E72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980546|gb|AAD35154.1|AE001692_11 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 328
Score = 107 bits (265), Expect = 2e-22
Identities = 82/329 (24%), Positives = 162/329 (48%), Gaps = 19/329 (5%)
Query: 10 LRKTMIYILTFFFAVTI-DFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA----F 64
+ K ++Y + F ++I FII + PGD L + TL ++ + + ++ +
Sbjct: 5 IAKRVLYAIPLLFVISIVSFIIIELPPGD---YLTTYVMTLRQSGETIDQAALEVLKKRY 61
Query: 65 GLDKPLWEQYISFW--KAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
GLDKP+ +Y +W + GD G S + + KPV+++L + + + + + + +W
Sbjct: 62 GLDKPVIVRYF-YWIGNIITKGDFGYS-FMWEKPVSDLLNQRVWWTILISVLSTAFAWVF 119
Query: 123 GNWLGALAGKNK-KLDNYLMPIF-YFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--Y 178
G +G +G ++ + +Y+ + Y A+P F A++L + F F + G +S Y
Sbjct: 120 GFLIGVYSGTHQYSIGDYVFTVLGYIGLATPNFLLALILLW-FMFVTTGVSLGGLFSPEY 178
Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
P SW D L H +P + L + G +R ++ EI Y+ + GV E
Sbjct: 179 AGAP-WSWAKFVDLLKHIWIPVVVLGTGSMAGLIRVLRANLLDEINKPYVVAARARGVPE 237
Query: 239 K-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
+ ++ K+ + A++P + L +V+G V +V + P +G +L+ + +QD +L
Sbjct: 238 RELVWKYPLRVAVIPFASTAGWALPQIVSGAVVTGIVLNLPTVGTLLLDALTSQDMYLAG 297
Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVR 326
L++ + ++ + D+L A +DPR+R
Sbjct: 298 SLVLILSVFTIIGTLISDILLAWLDPRIR 326
>pir||F72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981014|gb|AAD35588.1|AE001726_22 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 345
Score = 107 bits (265), Expect = 2e-22
Identities = 87/342 (25%), Positives = 150/342 (43%), Gaps = 23/342 (6%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y++R+ ++ L I F + + + D + L + T + +GL+
Sbjct: 4 YIIRRLLLLPLILLGVTFIVFSMIQSLGPDKLLAAYVNPNMLDKLTPEQMDALKEKYGLN 63
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
+Y+ + L GDLG S+ +PV + L LPY + L A+ FVG WLG
Sbjct: 64 DFFVVRYVKWLANTLRGDLGWSLVG-KEPVKDALLRRLPYTVELALYAIFPVVFVGIWLG 122
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
A + K LD+++ + P F F +L+ +F L W P + S
Sbjct: 123 VKAAVHRGKFLDHFIRIFAVVGWSFPDFVFGLLVLMIFYSILNWLPPGNLSMWAEEVIKS 182
Query: 186 WEFIK-------------------DYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEAD 226
EF + D L H P ++L + R+ ++ + +
Sbjct: 183 PEFHRYTKLITIDALLNGRLDIFWDGLKHLIGPIITLSWLWWAYLLRITRSSMLEVLNKE 242
Query: 227 YIRYLESLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLM 285
Y+R + G+ E +++ KHA +NA++P T + L +G V V+ VF+ G+G
Sbjct: 243 YVRTARAKGLPEDVVINKHARRNALIPVTTVAGGMVIGLFSGTVIVETVFNRTGVGSFTA 302
Query: 286 QGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
Q + DY + + L ++V N +ID+LYA+IDPR+R+
Sbjct: 303 QAALQLDYASVMASALFFSTILVVGNLIIDILYALIDPRIRL 344
>pir||T35939 probable transport permease protein - Streptomyces coelicolor
>gi|4158198|emb|CAA22761.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 334
Score = 104 bits (256), Expect = 2e-21
Identities = 86/329 (26%), Positives = 150/329 (45%), Gaps = 21/329 (6%)
Query: 6 KRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
+R L ++ ++TF F I P DP+ A A + + G
Sbjct: 19 RRALFAVPVVLVVTFGA-----FAIAAASPFDPVRAYAGTAAL--GADQETLDRLRENLG 71
Query: 66 LDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
+D+ ++ + + L GDLG S +PV +++ E L + L A + +G
Sbjct: 72 VDESFVARWWHWLTSALTGDLGHSSVLR-QPVTQVIGERLVWSALLCAVAFAVAVGLGLL 130
Query: 126 LGALAGKN--KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISG---AYSYGI 180
LG LA + LD + + Y L+A+P FW A+L +LF + P G S +
Sbjct: 131 LGVLAARRPGSVLDRAVTSLSYTLEAAPVFWIALLAVWLFALQWDVLPAGGLTDTASQQV 190
Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
P H LP L + QL + + +R + + D +R + G++E
Sbjct: 191 TPG-------QVAGHIVLPAGVLAVSQLPWFTLYVRQGVGDALAEDPVRGARARGLAEGT 243
Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
+L+ HA ++ +LP +T + ++ L+ G + V+ VFS+PGI ++ D+ L+
Sbjct: 244 VLVGHALRSGLLPVLTLIGSRVPELITGALLVETVFSWPGIAAATVEAATAVDFPLLAAL 303
Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
++ + VL N + DLLY + DPRV++S
Sbjct: 304 TVLATVAVLAGNLLADLLYGLFDPRVKLS 332
>dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus]
Length = 320
Score = 101 bits (250), Expect = 1e-20
Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 19/245 (7%)
Query: 101 LKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAIL 158
L P L L F A + S +G LG +AG + K LD + + ++P FW A+L
Sbjct: 69 LAVVFPATLELCFFAFLVSLLIGIPLGTVAGMKQGKWLDTSISFMSMSGYSAPIFWVALL 128
Query: 159 LSYLFTFKLGWFPISGAYS----------YGIIPSLSWE------FIKDYLHHWTLPFLS 202
L +F+ + FP++G Y + II + + ++ + H LP L
Sbjct: 129 LIMVFSLEYQLFPVAGRYDLLYEIDHVTGFAIIDAFMAKGEYRAHALQSVIEHMVLPCLV 188
Query: 203 LFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQL 261
L + MR+ + + +YIR G+S + I+ +H +NA+ P + + +QL
Sbjct: 189 LALAPTTQVVGLMRSSVAEVMSQNYIRAARIKGLSNREIVTQHVLRNAIPPIIPKVGVQL 248
Query: 262 GLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAII 321
++ + + +F++PGIG L+ + NQDY IQ +V+ VL AN + DL+ A+I
Sbjct: 249 SSMITLAIITESIFNWPGIGRWLLDALANQDYASIQAGVMVLATLVLTANILSDLIGAMI 308
Query: 322 DPRVR 326
+P VR
Sbjct: 309 NPLVR 313
>pir||A72537 probable oligopeptide transport permease protein APE1582 -
Aeropyrum pernix (strain K1) >gi|5105269|dbj|BAA80582.1|
(AP000062) 363aa long hypothetical oligopeptide
transport permease protein [Aeropyrum pernix]
Length = 363
Score = 100 bits (247), Expect = 2e-20
Identities = 74/303 (24%), Positives = 145/303 (47%), Gaps = 23/303 (7%)
Query: 49 LPEATKYLHSYFVQAFGL------DKPLWEQYISFWKAVLHGDLGISIYYY---PKPVAE 99
L E ++ L+ ++ +GL D W + K+ + D G++ Y Y + +
Sbjct: 63 LEEKSRQLYENLMERYGLTGNFVQDVATWT--VKLIKSNITFDFGVTQYSYIGGTNVIGD 120
Query: 100 ILKEALPYDLALLFPALVASWFVGNWLG-ALAGKNKKLDNYLMPIFYFLQAS-PYFWFAI 157
IL A+ L A + ++ +G LG +A K + + + +F + S P +W AI
Sbjct: 121 ILLLAMKNTAILFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWVAI 180
Query: 158 LLSYLFTFKLGWFPISGAYSYGIIPSLS---------WEFIKDYLHHWTLPFLSLFMVQL 208
++ +F+F L FP Y Y + L E K +L + T+P +++ +V
Sbjct: 181 IMILIFSFYLRLFPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSF 240
Query: 209 GGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAG 267
GG + +RN+++ ++ D++ + G+ E+ ++ H + + P VT LAL + G
Sbjct: 241 GGASYLIRNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGG 300
Query: 268 NVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
+ + VF +PG+G V I D ++ + V+ + ++ ++D +Y+++DPRVR
Sbjct: 301 AIITEAVFGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRVRT 360
Query: 328 SYT 330
T
Sbjct: 361 GAT 363
>pir||S77118 oligopeptide transport system permease protein appB - Synechocystis
sp. (strain PCC 6803) >gi|1652757|dbj|BAA17676.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 326
Score = 99.8 bits (245), Expect = 4e-20
Identities = 80/324 (24%), Positives = 152/324 (46%), Gaps = 17/324 (5%)
Query: 9 LLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDK 68
+ ++ I ++T + F + + PG+P+ L AT P ++ + ++ GLD+
Sbjct: 13 ICKRLAIAVITLLGISLVIFSLLALAPGNPLGEL----ATNPSISQEVRDNLRRSLGLDQ 68
Query: 69 PLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGA 128
L +Y+ + ++L GDLG S + PV +++ + LP L L+ A + S + LG
Sbjct: 69 ALPIRYLKWLWSLLQGDLGYS-FTSRSPVIDLIGQRLPTTLWLMGTAYLISLAIAIPLGV 127
Query: 129 LAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPI--SGAYSYGIIPSL 184
A + + + + I + P F +L +F+ +L W P + + SL
Sbjct: 128 TAALYRGRWWEPLISGISLMGFSLPTFLTGLLFILIFSVQLRWLPFIYDSTLTVDSMASL 187
Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR--YLESLGVSEKILM 242
+ + +P L Q +R+ + E+ +YIR Y + LG + +L
Sbjct: 188 GTQ-----IRQLLMPVGVLVFYQSAVILRFVRSAALEELPQNYIRTAYAKGLG-TWGMLK 241
Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
H KNA LP +T +AL + + G + + VF PGIG +L++ I D ++ +
Sbjct: 242 NHLLKNASLPLITLIALDVPTIFTGALVTEQVFRVPGIGALLIESIYRSDTPVVMAVTFL 301
Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
+ ++ + + DL+Y ++DPR+R
Sbjct: 302 YAVLIVFFSSLADLIYQLVDPRIR 325
>pir||C82170 peptide ABC transporter, permease protein VC1681 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656197|gb|AAF94831.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 320
Score = 97.9 bits (240), Expect = 2e-19
Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 47/338 (13%)
Query: 8 YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
Y +RK ++I+T + + + R P P ++
Sbjct: 4 YTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLI------------------------- 38
Query: 68 KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
W+ + S+ ++ + G++ P+ L P + L A + S VG +G
Sbjct: 39 -GFWQGWSSYLVQLMEFNFGLN--KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIG 95
Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS-------- 177
LAG + K LD + I ++P FW A+++ F+ FP++G Y
Sbjct: 96 TLAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHV 155
Query: 178 --YGIIPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
+ +I + + ++ + H TLP L L + MR + + +YIR
Sbjct: 156 TGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIR 215
Query: 230 YLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
+ G+S +I+ +H +NA+ P + +QL ++ + + +F++PGIG L+ +
Sbjct: 216 AAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDAL 275
Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
N+D+ IQ +V+ VL AN + DL+ A +P VR
Sbjct: 276 ANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
>gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halobacterium sp.
NRC-1]
Length = 326
Score = 94.4 bits (231), Expect = 2e-18
Identities = 74/325 (22%), Positives = 144/325 (43%), Gaps = 8/325 (2%)
Query: 5 IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
+K Y++++ + + + A+T+ F + P + + + + +
Sbjct: 1 MKWYIVKRVLWTFVVMWIALTLTFGLLVASPDTGQTKSVMSCSASGGDAQQCREQYRERQ 60
Query: 65 GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
LDKP+ E+Y+++ + + G S +A I EA PY P LV S +G
Sbjct: 61 NLDKPITERYVNYVTNMATLNWGWSESRSQSVMAAI-SEAWPYTAQYAIPVLVVSTILGY 119
Query: 125 WLGALAGKNK--KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
LG + K D + +F + P FWFA++L L + IS Y GI
Sbjct: 120 GLGLYSAYKPYTKADYLGSFVGFFGISIPNFWFALVLIILLGTHFEF--ISTYYQSGIPI 177
Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KIL 241
+ W + + + +P L L R I ++ ++++ ++ G S+ +++
Sbjct: 178 NQGWASMAN-ITQLLIPSFVLLTASLAWQMRYSRAQAIEQMNQEFVKVAKAKGASQWRLM 236
Query: 242 MKHAFKNAMLPQVTGLALQL-GLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
+ H F+ A +P T L + +G+V ++ +FS PG+G + I QD L+
Sbjct: 237 IHHVFRMAAVPLTTSFVSSLLAIFWSGSVIIEQIFSIPGLGLMTFTAITEQDTTLVLATT 296
Query: 301 LVIILTVLVANFVIDLLYAIIDPRV 325
++ + ++ N + D+ Y I+DPR+
Sbjct: 297 MITVFLAIIGNLIEDVSYTILDPRI 321
>emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.]
Length = 207
Score = 91.7 bits (224), Expect = 1e-17
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 151 PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQL 208
P F +L Y F + W P+ G + + G+ P + H LP ++L + +
Sbjct: 37 PVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAP---------WFLHLILPTVTLSVPYI 87
Query: 209 GGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAG 267
A R ++ + DY+R + G S +L HA KNA +P +T + + ++ G
Sbjct: 88 AFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPILTVIGISFAYMIGG 147
Query: 268 NVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
V + VF+ PGIG +++ I N+DY +IQ ++I ++ N ++DL Y +IDPR+R
Sbjct: 148 VVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIR 206
>pir||E81253 probable peptide ABC-transport system permease protein Cj1583c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969000|emb|CAB73571.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 314
Score = 86.6 bits (211), Expect = 4e-16
Identities = 80/323 (24%), Positives = 141/323 (42%), Gaps = 19/323 (5%)
Query: 9 LLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDK 68
+L++ + I FF+ + F++ G ++ + +K Q GLDK
Sbjct: 1 MLKRLVFSIFIAFFSTFLCFVLLHFSKGS-----IAYANGVNSQSKEFVQRIEQNLGLDK 55
Query: 69 PLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGA 128
PL EQY + L GDLG+S + + V +++KE + L F AL+ + + +L
Sbjct: 56 PLLEQYKIWLFKALKGDLGVS-FLSGESVLKLIKERIFNTFILGFSALMLLFLLSVFLAL 114
Query: 129 LAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSW 186
L K+ +D + + + A P F A+L +F P+ G+ G
Sbjct: 115 LGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPVMGSSDIG------- 167
Query: 187 EFIKDYLH---HWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMK 243
F D+L+ H LP L L + L + RN I +I+ L + + EK +
Sbjct: 168 -FEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARALREKDIYF 226
Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
K ++ P V + G V+ VF+Y G+G +L + I+ +DY ++
Sbjct: 227 LVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDYPIVLALIFFS 286
Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
+L F+ D++ I++PR+R
Sbjct: 287 VLLAAFFTFLSDIVARILNPRLR 309
>sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|2146483|pir||S73942 oligopeptide transport system
permease protein oppB - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674318|gb|AAB96264.1| (AE000058)
oligopeptide transport system permease protein OppB
[Mycoplasma pneumoniae]
Length = 389
Score = 82.3 bits (200), Expect = 8e-15
Identities = 74/322 (22%), Positives = 144/322 (43%), Gaps = 39/322 (12%)
Query: 21 FFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYISFWKA 80
F +TI F + P++ S+ EA K + AFG + PL +Y +W+
Sbjct: 2 FIVMTIVFFLVNSTGQTPLSATSSKDL---EAVKTQ----LDAFGFNDPLIVRYGRYWQT 54
Query: 81 VLHGDLGISIYYYPKP---VAEILKEALPYDLALLFPALVASWFVGNWLGALAG------ 131
+ G LG YY P + +I+ +P L ++ + S+F+G+ LG + G
Sbjct: 55 LFSGSLGT---YYSSPNQTIDQIVFGRVPNTLYVV----LISFFIGSLLGIIFGMISGLF 107
Query: 132 KNKKLDNYLMPIFYFLQASPYFWFAILL---SYLFTFKLGWFPISGA-YSYGIIPSLSWE 187
+ K +D + + + P F + L + LF + A +++G
Sbjct: 108 RGKLIDAVINVLVVLFVSIPSFVVGLGLLKAAGLFRLPPRFINFDDANFNFG-------- 159
Query: 188 FIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAF 246
++L +P LSL + +RN ++ + DYI+ S G+S + + H F
Sbjct: 160 ---NFLLASIIPILSLVFYTSAAFTYRVRNEVVEVMNQDYIKTARSKGLSTFAVALYHIF 216
Query: 247 KNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILT 306
+N+++P V + +G ++ +F G+ +L+ + + + L+ + I
Sbjct: 217 RNSIIPSVPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQSNETNLVMFNIMFIQGI 276
Query: 307 VLVANFVIDLLYAIIDPRVRIS 328
L+A+ I+L+Y ++DPR+RI+
Sbjct: 277 PLLASVFIELIYVLVDPRIRIA 298
>pir||T45279 oligopeptide transport membrane protein bldKC [imported] -
Streptomyces coelicolor >gi|1532203|gb|AAB09556.1|
(U68036) BldKC [Streptomyces coelicolor A3(2)]
Length = 323
Score = 81.5 bits (198), Expect = 1e-14
Identities = 74/338 (21%), Positives = 151/338 (43%), Gaps = 33/338 (9%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
++L+R++ +L F + +P D +L P+A + +H + G
Sbjct: 3 QFLIRRSFGAVLILVLISAFTFFMFFAIPQD--RMLACGKNCNPDALEIIH----KNLGF 56
Query: 67 DKPLWEQYISFWKAVLHGD-----------LGISIYYYPKPVAEILKEALPYDLALLFPA 115
D+P+ QY F + G G+S + + V + + + P ++L +
Sbjct: 57 DQPVTVQYWHFLAGIFTGREFAVGHCDAPCFGVS-FANNQNVWDTILDRFPLTVSLTVGS 115
Query: 116 LVASWFVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
L+ VG G LA KN+ ++ +F ++++S L F ++
Sbjct: 116 LIVFLIVGLGAGLLAAKNR--GTWIDKVFSS--------GSLVVSSLQIFLGPLVLLALV 165
Query: 176 YSYGIIPSLSWEFIKDYLHHW----TLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYL 231
YS G + + I + W LP++ + + +A R+ +I +++ +++R
Sbjct: 166 YSTGWLQKPKYVPISEDAAGWFAGLLLPWIVMATIFTANYARMSRSSMIEQLQEEHVRAA 225
Query: 232 ESLGVSEKI-LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMN 290
+ G+S ++A++ +++P VT L + L L+ G + ++ F GIG +N
Sbjct: 226 RAKGMSSNYTFFRYAWRGSLVPIVTILGIDLSALMGGGMVTEMTFGLAGIGRSRWSRSIN 285
Query: 291 QDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
+D ++ G LV ++V N ++D +YA+IDP R+S
Sbjct: 286 KDLPMLMGVMLVSAALIIVFNLIVDAMYAVIDPASRLS 323
>sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1361737|pir||E64208 oligopeptide transport system
permease protein oppB homolog - Mycoplasma genitalium
>gi|1045754|gb|AAC71295.1| (U39688) oligopeptide ABC
transporter, permease protein (oppB) [Mycoplasma
genitalium]
Length = 407
Score = 81.1 bits (197), Expect = 2e-14
Identities = 67/333 (20%), Positives = 143/333 (42%), Gaps = 30/333 (9%)
Query: 7 RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
+Y+L++ + ++ F ++I F + P++ +R +A +Q FG
Sbjct: 3 KYILKRLGLAVVAMFIVMSIVFFLVNATGNVPLSATSARDIAAVQAQ-------LQEFGF 55
Query: 67 DKPLWEQYISFWKAVLHGDLGISIYYYPKP---VAEILKEALPYDLALLFPALVASWFVG 123
+ P+ +Y +W + YY P + EI+ +P L ++ + + +G
Sbjct: 56 NDPIIVRYFRYWAKLFSFQADALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGSLLG 115
Query: 124 NWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSY-LFTFKLGWFPISGAYSYGIIP 182
+LG ++G N+ FL A+ + +S F LG ++G + +P
Sbjct: 116 IFLGMVSGLNRGK---------FLDAAINVLVVLFVSIPSFVVGLGLLKLAGFLN---LP 163
Query: 183 SLSWEF------IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGV 236
F +L +P LSL + +RN ++ + DYI+ +S G+
Sbjct: 164 PRFINFDDAFFSFDRFLLASIIPILSLVFYSSAAFTYRIRNEVVEVMNQDYIKTAKSKGL 223
Query: 237 SEKILMK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFL 295
+ + H F+N+++P + + +G ++ +F G+ +L+ + + +
Sbjct: 224 GMFAVARYHIFRNSIIPSIPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQVNETNM 283
Query: 296 IQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
+ L I L+A+ I+ +Y ++DPR+RI+
Sbjct: 284 VMFNILFIQGIPLLASVFIEFIYVLVDPRIRIA 316
>emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 500
Score = 80.4 bits (195), Expect = 3e-14
Identities = 60/224 (26%), Positives = 109/224 (47%), Gaps = 16/224 (7%)
Query: 113 FPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWF 170
F ++ S VG LG KN D + F+ A P +I + Y+ F G
Sbjct: 289 FFGVMFSHIVGLPLGLFMARFKNTYFDRFSTATMTFMLALP----SIAVIYVVRFLGGMV 344
Query: 171 PISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRY 230
+ ++ P L K Y+ LP L L ++ + I R ++ +D++R+
Sbjct: 345 GLPDSF-----PMLGASDPKSYI----LPALILGILNIPTTVIWFRRYLVDLQASDWVRF 395
Query: 231 LESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIM 289
S G+SE +I H FKNAM+P V+G+ + L + G + VF++PG+G +L+ I
Sbjct: 396 ARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIK 455
Query: 290 NQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTEEG 333
+ + +I G + + +V+ + D++ ++DPR+++S + G
Sbjct: 456 SANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIKLSTKKGG 499
>sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMIC
>gi|98016|pir||S11150 amiC protein - Streptococcus
pneumoniae >gi|47344|emb|CAA35214.1| (X17337) AmiC
protein [Streptococcus pneumoniae]
Length = 498
Score = 76.9 bits (186), Expect = 3e-13
Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 16/203 (7%)
Query: 132 KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKD 191
KN +D+ FL A P ++ ++ +L I+ S+ I+ + W
Sbjct: 309 KNTWIDSLSTGALTFLLALP------TIALVYIVRLIGSSIALPDSFPILGAGDWR---- 358
Query: 192 YLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAM 250
+ LP + L ++ G AI +R +I D++R+ + G+SEK I KH FKNAM
Sbjct: 359 ---SYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGLSEKEISNKHIFKNAM 415
Query: 251 LPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVA 310
+P V+G+ + ++ G + VF++PG+G +L+ + + ++ G + + +
Sbjct: 416 VPLVSGIPAAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFS 475
Query: 311 NFVIDLLYAIIDPRVRISYTEEG 333
+ D+ IIDPR+++ TE+G
Sbjct: 476 RLLGDIWMTIIDPRIKL--TEKG 496
>pir||D71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328914|gb|AAC68079.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 492
Score = 73.7 bits (178), Expect = 3e-12
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 12/242 (4%)
Query: 97 VAEILKEALPYDLALLFPALVASWFVGNWLGALAGKNKK--LDNYLMPIFYFLQASPYF- 153
V+E++K L L L ++ + + G + NK +D+ L +F L + P F
Sbjct: 247 VSEVIKR-LGSSLILSLLPMIVVFILCQVFGMIMAVNKNHWIDHLLNFLFLILFSIPVFV 305
Query: 154 ---WFA--ILLSYLFTFKLGWFPISGAYSYGII--PSLSWEFIKDYLHHWTLPFLSLFMV 206
W +L+ F P SG S I S+E + D + H LPF ++
Sbjct: 306 AVPWIIDNFVLNKTVPFTSISMPYSGLCSSPEIFKEMTSFEKLTDIVLHSFLPFCAVSYG 365
Query: 207 QLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLV 265
+ R + + + D+I L + G+S+ IL++H KN+ +T LA L L+
Sbjct: 366 AFAAQSRLSRAVFLEVLGEDHISALRARGISQYDILVRHVGKNSAATLITSLASSLSALL 425
Query: 266 AGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
G + V+ +F G G Q I+N+D+ ++ + ++ + L+ + D+ Y ++DPRV
Sbjct: 426 GGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVIMGSVISLIGYLIGDICYVLLDPRV 485
Query: 326 RI 327
++
Sbjct: 486 QL 487
>pir||D72059 peptide ABC transporter, permease protein, probable CP0150
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376893|gb|AAD18737.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189086|gb|AAF38032.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39]
Length = 493
Score = 72.2 bits (174), Expect = 8e-12
Identities = 65/244 (26%), Positives = 115/244 (46%), Gaps = 16/244 (6%)
Query: 97 VAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYF- 153
++E++K L L L ++ + + G + +N+ +D+ L IF L + P F
Sbjct: 248 ISEVIKR-LRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306
Query: 154 ---WFA--ILLSYLFTFKLGWFPISGAYS----YGIIPSLSWEFIKDYLHHWTLPFLSLF 204
W +++ F P SG S + + +L F D + H LPF ++
Sbjct: 307 AVPWILDNFVINKTIPFTTIPMPYSGLRSPPEVFNELSTLGRIF--DLVSHGFLPFCAVS 364
Query: 205 MVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGL 263
L + R++ + + D+I ++ G+ IL KH KNA + VT LA LG
Sbjct: 365 YGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIVTSLASSLGT 424
Query: 264 LVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
L+ G + V+ +F+ G G Q I+N+D+ ++ + LV LV + D+ Y ++DP
Sbjct: 425 LLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYVLLDP 484
Query: 324 RVRI 327
RV++
Sbjct: 485 RVQL 488
>pir||G81668 peptide ABC transporter, permease protein, probable TC0764
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190789|gb|AAF39567.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 492
Score = 72.2 bits (174), Expect = 8e-12
Identities = 62/245 (25%), Positives = 118/245 (47%), Gaps = 18/245 (7%)
Query: 97 VAEILKEALPYDLALLFPALVASWFVGNWLGAL--AGKNKKLDNYLMPIFYFLQASPYF- 153
V+E++K L L L ++ + + G + KN+ +D+ L +F L + P F
Sbjct: 247 VSEVIKR-LGSSLVLSLLPMIVVFVLCQVFGMIMAVNKNRWIDHLLNFLFLILFSIPVFV 305
Query: 154 ---WFAILLSYLFTFKLGWFPISGAYSYGIIPS-------LSWEFIKDYLHHWTLPFLSL 203
W I+ +++ + + IS YS G+ S S E + D + H LPF ++
Sbjct: 306 AVPW--IIDNFVLNKTVPFTSISMPYS-GLCSSPEVFKDMTSLEKLIDIVLHSFLPFCAV 362
Query: 204 FMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLG 262
+ R + + + D+I L + G+S+ IL++H KN+ +T LA L
Sbjct: 363 SYGAFAAQSRLSRAVFLEVLGEDHIPALRARGISQYDILIRHVGKNSAATLITSLASSLS 422
Query: 263 LLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIID 322
L+ G + V+ +F G G Q I+N+D+ ++ + ++ + L+ + D+ Y ++D
Sbjct: 423 ALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVIMGSVISLIGYLIGDICYVLLD 482
Query: 323 PRVRI 327
PRV++
Sbjct: 483 PRVQL 487
>dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 493
Score = 72.2 bits (174), Expect = 8e-12
Identities = 65/244 (26%), Positives = 115/244 (46%), Gaps = 16/244 (6%)
Query: 97 VAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYF- 153
++E++K L L L ++ + + G + +N+ +D+ L IF L + P F
Sbjct: 248 ISEVIKR-LRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306
Query: 154 ---WFA--ILLSYLFTFKLGWFPISGAYS----YGIIPSLSWEFIKDYLHHWTLPFLSLF 204
W +++ F P SG S + + +L F D + H LPF ++
Sbjct: 307 AVPWILDNFVINKTIPFTTIPMPYSGLRSPPEVFNELSTLGRIF--DLVSHGFLPFCAVS 364
Query: 205 MVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGL 263
L + R++ + + D+I ++ G+ IL KH KNA + VT LA LG
Sbjct: 365 YGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIVTSLASSLGT 424
Query: 264 LVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
L+ G + V+ +F+ G G Q I+N+D+ ++ + LV LV + D+ Y ++DP
Sbjct: 425 LLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYVLLDP 484
Query: 324 RVRI 327
RV++
Sbjct: 485 RVQL 488
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.147 0.461
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125535903
Number of Sequences: 2977
Number of extensions: 5463805
Number of successful extensions: 17462
Number of sequences better than 1.0e-10: 133
Number of HSP's better than 0.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 17003
Number of HSP's gapped (non-prelim): 150
length of query: 334
length of database: 189,106,746
effective HSP length: 49
effective length of query: 285
effective length of database: 159,780,883
effective search space: 45537551655
effective search space used: 45537551655
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)