BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0628 (appB-2) DE:OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE
PROTEIN APPB
         (334 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75142 oligopeptide transport system permease protein appb ...   683  0.0
pir||D72282 oligopeptide ABC transporter, permease protein - The...   471  e-132
pir||H75068 dipeptide abc transporter, permease protein (dppb) P...   439  e-122
pir||B71163 probable oligopeptide transport system permease prot...   430  e-120
pir||H72428 oligopeptide ABC transporter, permease protein - The...   309  3e-83
emb|CAC12449.1| (AL445067) dipeptide transport system, permease ...   242  4e-63
pir||H72420 oligopeptide ABC transporter, permease protein - The...   237  2e-61
pir||B72393 oligopeptide ABC transporter, permease protein - The...   230  2e-59
pir||G82301 peptide ABC transporter, permease protein VC0619 [im...   219  4e-56
pir||C71130 probable oligopeptide transport permease protein APP...   214  1e-54
gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus]    214  1e-54
pir||C72284 oligopeptide ABC transporter, permease protein - The...   206  4e-52
emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methan...   194  1e-48
pir||D75202 dipeptide abc transporter, dipeptide-binding protein...   189  3e-47
gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus sol...   181  9e-45
gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus sol...   181  1e-44
gi|11499357 dipeptide ABC transporter, permease protein (dppB) [...   173  2e-42
pir||C83082 probable permease of ABC transporter PA4503 [importe...   168  9e-41
gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T...   167  2e-40
pir||A72289 oligopeptide ABC transporter, permease protein - The...   166  4e-40
gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-...   164  1e-39
sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   163  2e-39
pir||B72367 oligopeptide ABC transporter, permease protein - The...   161  1e-38
dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) ...   161  1e-38
pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|29...   160  2e-38
sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   159  3e-38
emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter...   155  7e-37
pir||F75454 peptide ABC transporter, permease protein - Deinococ...   155  9e-37
pir||B38447 oligopeptide permease oppB homolog - Bacillus subtil...   153  2e-36
sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   153  2e-36
pir||F72451 probable peptide transport system permease protein A...   153  3e-36
pir||C64557 dipeptide ABC transporter, permease protein - Helico...   152  8e-36
pir||G71951 dipeptide transport system permease protein - Helico...   151  1e-35
dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permeas...   151  1e-35
sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE...   150  3e-35
gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis]     150  3e-35
dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [O...   148  7e-35
sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   147  2e-34
emb|CAC05748.1| (AL391751) putative peptide transport system int...   145  6e-34
emb|CAC11408.1| (AL445063) dipeptide transport system permease p...   145  8e-34
emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related prote...   143  3e-33
dbj|BAB04287.1| (AP001509) nickel transport system (permease) [B...   141  9e-33
sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   141  1e-32
sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI...   141  1e-32
pir||F72215 oligopeptide ABC transporter, permease protein - The...   141  1e-32
gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T...   139  3e-32
pir||S47696 nickel transport system permease protein nikB - Esch...   139  4e-32
dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Ba...   139  4e-32
pir||B75381 peptide ABC transporter, permease protein - Deinococ...   139  6e-32
dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permeas...   139  6e-32
pir||B75118 dipeptide abc transporter, permease protein (dppb) P...   138  8e-32
pir||B72617 probable dipeptide transport system permease protein...   138  1e-31
sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE...   137  2e-31
pir||C82242 oligopeptide ABC transporter, permease protein VC109...   136  4e-31
pir||C71841 probable peptide ABC transporter, ATP-binding protei...   134  1e-30
gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis]       134  1e-30
pir||D71014 probable dipeptide transport system permease protein...   134  1e-30
gb|AAC67218.1| (U78968) transmembrane transport protein DppB [St...   134  1e-30
sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   132  4e-30
sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P...   132  4e-30
pir||C64676 oligopeptide ABC transporter, permease protein - Hel...   132  4e-30
sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   131  1e-29
sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   131  1e-29
gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [...   131  2e-29
pir||B82356 peptide ABC transporter, permease protein VC0172 [im...   130  2e-29
gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis]       129  4e-29
pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC...   129  6e-29
sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   128  1e-28
sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   127  1e-28
pir||B70789 probable peptidetransport system permease - Mycobact...   126  3e-28
pir||C70141 oligopeptide ABC transporter, permease protein (oppB...   126  4e-28
pir||A75027 oligopeptide transport permease protein appb PAB1194...   126  4e-28
dbj|BAA14776.1| (D90763) Oligopeptide transport system permease ...   125  1e-27
gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola]         124  2e-27
dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permeas...   123  4e-27
sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE...   122  5e-27
gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; Dp...   122  6e-27
sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   122  6e-27
pir||E72300 oligopeptide ABC transporter, permease protein - The...   121  1e-26
pir||F83419 probable permease of ABC transporter PA1809 [importe...   120  2e-26
gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|649829...   120  2e-26
pir||T03433 probable transport protein accD - Agrobacterium tume...   119  5e-26
pir||A71212 probable oligopeptide transport system permease prot...   119  5e-26
pir||F72720 probable oligopeptide transport system permease prot...   118  7e-26
pir||F75529 probable peptide ABC transporter, permease protein -...   118  7e-26
sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S...   118  9e-26
pir||D75573 peptide ABC transporter, permease protein - Deinococ...   118  9e-26
pir||C71545 probable oligopeptide permease - Chlamydia trachomat...   117  2e-25
pir||E72107 peptide ABC transporter, permease protein CP0568 [im...   116  4e-25
sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S...   116  5e-25
gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S7...   115  1e-24
pir||F81699 peptide ABC transporter, permease protein TC0472 [im...   114  1e-24
gb|AAC18097.1| (AF058302) membrane protein of putative ABC trans...   113  2e-24
sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN...   112  5e-24
pir||T34758 oligopeptide transport system integral membrane prot...   112  7e-24
pir||F82377 ABC transporter, permease protein VCA1099 [imported]...   112  7e-24
gb|AAC69838.1| (AF076683) oligopeptide transporter putative memb...   111  1e-23
gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1]        111  1e-23
gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; Dp...   111  2e-23
gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonel...   111  2e-23
gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB...   110  2e-23
dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permeas...   110  3e-23
gi|10954708 hypothetical ABC-transporter gene~similar to agaB ge...   109  4e-23
gb|AAC69843.1| (AF076684) oligopeptide transporter putative memb...   109  6e-23
gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB...   108  8e-23
pir||E72424 oligopeptide ABC transporter, permease protein - The...   107  2e-22
pir||F72371 oligopeptide ABC transporter, permease protein - The...   107  2e-22
pir||T35939 probable transport permease protein - Streptomyces c...   104  2e-21
dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus]                101  1e-20
pir||A72537 probable oligopeptide transport permease protein APE...   100  2e-20
pir||S77118 oligopeptide transport system permease protein appB ...   100  4e-20
pir||C82170 peptide ABC transporter, permease protein VC1681 [im...    98  2e-19
gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halob...    94  2e-18
emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.]                92  1e-17
pir||E81253 probable peptide ABC-transport system permease prote...    87  4e-16
sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...    82  8e-15
pir||T45279 oligopeptide transport membrane protein bldKC [impor...    82  1e-14
sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...    81  2e-14
emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyo...    80  3e-14
sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...    77  3e-13
pir||D71510 probable oligopeptide permease - Chlamydia trachomat...    74  3e-12
pir||D72059 peptide ABC transporter, permease protein, probable ...    72  8e-12
pir||G81668 peptide ABC transporter, permease protein, probable ...    72  8e-12
dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila ...    72  8e-12

>pir||A75142 oligopeptide transport system permease protein appb PAB0628 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458361|emb|CAB49850.1| (AJ248285) OLIGOPEPTIDE
           TRANSPORT SYSTEM PERMEASE PROTEIN APPB [Pyrococcus
           abyssi]
           Length = 334
           
 Score =  683 bits (1743), Expect = 0.0
 Identities = 334/334 (100%), Positives = 334/334 (100%)

Query: 1   MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
           MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF
Sbjct: 1   MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60

Query: 61  VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
           VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW
Sbjct: 61  VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120

Query: 121 FVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180
           FVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI
Sbjct: 121 FVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180

Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240
           IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI
Sbjct: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240

Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
           LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF
Sbjct: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300

Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
           LVIILTVLVANFVIDLLYAIIDPRVRISYTEEGA
Sbjct: 301 LVIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334


>pir||D72282 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981775|gb|AAD36297.1|AE001778_18 (AE001778)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 329
           
 Score =  471 bits (1200), Expect = e-132
 Identities = 213/328 (64%), Positives = 273/328 (82%)

Query: 5   IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
           +++YL +K +IYILTFFFAVTID+ IPR MPG+PI  L+SRFA LPE+ K L SYF QAF
Sbjct: 1   MRKYLTKKILIYILTFFFAVTIDWAIPRFMPGNPINFLISRFAGLPESVKVLQSYFTQAF 60

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
           GLDKPLWEQYI+FWKA+  GDLGISIY YP+PVA+++  ALPY L +L PA++ S+ +GN
Sbjct: 61  GLDKPLWEQYINFWKALFRGDLGISIYMYPQPVAKVIARALPYSLIVLLPAVLLSFAIGN 120

Query: 125 WLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
             GA   + K+LDN+ +P+FY L ASPYFWF ILL+++F   +  FP++GAYS+GI PS 
Sbjct: 121 RFGAFVARKKRLDNFALPVFYTLTASPYFWFGILLAWIFGVVIPLFPLAGAYSFGITPSF 180

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKH 244
           SW+FI D+LHHW LPF SLF+V LGGWAIGMRNMIIYE+EA+Y RYLE+LG S++++ K+
Sbjct: 181 SWDFILDFLHHWVLPFGSLFLVMLGGWAIGMRNMIIYELEANYSRYLEALGSSQRLIRKY 240

Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
           A++NA+LPQ+TGLA+QLG +VAG +T ++VFSYPGIGY+LMQGI+NQDYFLIQG FL II
Sbjct: 241 AYRNAILPQITGLAIQLGTVVAGALTTEIVFSYPGIGYILMQGILNQDYFLIQGCFLFII 300

Query: 305 LTVLVANFVIDLLYAIIDPRVRISYTEE 332
           L VL+ANF++D+ Y IIDPR+R SY+ E
Sbjct: 301 LGVLLANFLVDIFYVIIDPRIRKSYSGE 328


>pir||H75068 dipeptide abc transporter, permease protein (dppb) PAB1344 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458958|emb|CAB50445.1| (AJ248287) dipeptide ABC
           transporter, permease protein (dppB) [Pyrococcus abyssi]
           Length = 330
           
 Score =  439 bits (1116), Expect = e-122
 Identities = 200/329 (60%), Positives = 262/329 (78%), Gaps = 2/329 (0%)

Query: 4   GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLL-SRFATLPEATKYLHSYFVQ 62
           G K+YL RK +IY LTF FAVT+++++PR+MPGDPI +++ S     P+  + L  ++  
Sbjct: 2   GFKQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYED 61

Query: 63  AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
            +GL+KPL+ Q+I+FWK++L GDLG SI Y    V+ I+K ALPYD+A+LFPA+V SW +
Sbjct: 62  LYGLNKPLYVQFINFWKSLLRGDLGYSILYRDS-VSNIIKHALPYDIAILFPAIVLSWII 120

Query: 123 GNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
           GNWLGALAGKNKK D YLMP+FYFL + PYFWFA++L Y    KL  FP  GAYS  ++P
Sbjct: 121 GNWLGALAGKNKKYDKYLMPVFYFLASIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVP 180

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
           S S  FI D+L HW LPFLSLF+V +G WAIGMRNMIIYE+EADY+RYLE+LG SEK+L 
Sbjct: 181 SFSITFIVDFLKHWILPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLLT 240

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
           KHA++NA+LPQVTGLALQLGL+VAG +  ++VF+YPG+G +LM   ++QDYFL+QG FL+
Sbjct: 241 KHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMHAALSQDYFLLQGGFLM 300

Query: 303 IILTVLVANFVIDLLYAIIDPRVRISYTE 331
           +I+ VLVANF+ID++YA+IDPRVR+SY E
Sbjct: 301 VIIAVLVANFIIDIVYALIDPRVRVSYEE 329


>pir||B71163 probable oligopeptide transport system permease protein AppB -
           Pyrococcus horikoshii >gi|3256908|dbj|BAA29591.1|
           (AP000002) 330aa long hypothetical oligopeptide
           transport system permease protein AppB [Pyrococcus
           horikoshii]
           Length = 330
           
 Score =  430 bits (1095), Expect = e-120
 Identities = 195/329 (59%), Positives = 261/329 (79%), Gaps = 2/329 (0%)

Query: 4   GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLL-SRFATLPEATKYLHSYFVQ 62
           G   YL RK ++Y+LTF FAVT+++++PR+MPGDPI +++ S     P+  + L  ++ Q
Sbjct: 2   GFGDYLKRKIIVYVLTFIFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLRFYEQ 61

Query: 63  AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
            +GL+KPL+ Q+++FW A+  GDLG SI Y   PV+ +LK ALPYD+A+L PA+V SW +
Sbjct: 62  LYGLNKPLYVQFVNFWVALFKGDLGYSILYRA-PVSRLLKNALPYDIAILLPAIVLSWLI 120

Query: 123 GNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
           GNWLGA AGKNKK D Y+MP+FYFL + PYFWFA+LL YL   K G  P  GAYS  +IP
Sbjct: 121 GNWLGAFAGKNKKYDKYMMPLFYFLASMPYFWFAMLLVYLVGVKAGILPYQGAYSPDLIP 180

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
           + S +F+ D+L HW +PFLSLF+V +G WAIGMRNMIIYE+EADY+RYLE+LG SEK++ 
Sbjct: 181 TFSLKFVVDFLKHWIMPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLEALGASEKLMT 240

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
           KHA+KNA+LPQ+TGLALQLGL+VAG +  ++VF+YPG+G +LM+  M+QDYFL+QG FL+
Sbjct: 241 KHAYKNAILPQITGLALQLGLMVAGAIATEIVFNYPGVGVLLMKAAMSQDYFLLQGGFLM 300

Query: 303 IILTVLVANFVIDLLYAIIDPRVRISYTE 331
           I+++VLVANFVID++YA+IDPRVR SY E
Sbjct: 301 IVISVLVANFVIDIVYALIDPRVRASYLE 329


>pir||H72428 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980514|gb|AAD35124.1|AE001690_18 (AE001690)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 338
           
 Score =  309 bits (783), Expect = 3e-83
 Identities = 141/327 (43%), Positives = 217/327 (66%), Gaps = 6/327 (1%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATL----PEATKYLHSYFVQ 62
           +YLLR+ +  ++T+  A TI FI+PR +PG+P++ +LS  + +    PEA +      ++
Sbjct: 8   KYLLRRFIFLLVTYIVATTIVFILPRAIPGNPLSQILSGLSRVAQANPEAIRAAERTLME 67

Query: 63  AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
            FGL KP + QY  F    L GDLG SI +YP+ V +++   +P+ L LL PA + +W +
Sbjct: 68  EFGLGKPWYVQYFEFITKALRGDLGTSITFYPRKVIDLIIPVIPWTLILLLPATIVAWIL 127

Query: 123 GNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180
           GN LGALA   +N  +D  ++     +   PY+W  ++  +LF  KLGW P+ GAYS G 
Sbjct: 128 GNSLGALAAYKRNTWIDKGVLTTSLIVSQIPYYWLGMIFIFLFGVKLGWLPVQGAYSQGT 187

Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240
           IP+LSW F  D L H+ +PF S+ +  +GGWAIGMR M+IYE+ +DY  + E LG+ +K 
Sbjct: 188 IPNLSWSFFVDVLKHYIMPFASIVVSAMGGWAIGMRLMVIYELGSDYAMFSEYLGMKDKR 247

Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
           + K+ F+N++LPQ+TGLAL LG ++ G +  ++VF+YPG GY+L + +   DY LIQG F
Sbjct: 248 IFKYVFRNSLLPQITGLALSLGGVLGGALITEIVFNYPGTGYLLFRALTTLDYPLIQGIF 307

Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
           +++I ++ +ANF++D LYA+IDPR+R+
Sbjct: 308 VILIASIYLANFIVDFLYALIDPRIRL 334


>emb|CAC12449.1| (AL445067) dipeptide transport system, permease protein (dppB)
           related protein [Thermoplasma acidophilum]
           Length = 340
           
 Score =  242 bits (612), Expect = 4e-63
 Identities = 121/325 (37%), Positives = 198/325 (60%), Gaps = 5/325 (1%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEA---TKYLHSYFVQA 63
           +Y+++K  ++   F  A+T++F++PR+MPG+P  V+ +       +     YLH   V+ 
Sbjct: 12  KYIIKKISLFFGIFIGAITVNFLLPRMMPGNPAVVVYNEILKAGGSGVNPAYLHQLEVEY 71

Query: 64  FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
              + P+++QY  +   + HG+LG+SI +YP+PV+ IL EALP+ L L+  ++  S+F+G
Sbjct: 72  GISNAPIYDQYFQYLWNLFHGNLGLSIAFYPEPVSAILAEALPWTLFLVISSITISFFLG 131

Query: 124 NWLGALAGKNKKLDNYL-MPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
           N LG  AG N+     L + +F    AS P F  A ++  +F+     FP+ GAY   + 
Sbjct: 132 NRLGRYAGINRNTSKDLAIDVFAMFMASFPAFVLAFIVLDIFSVYGHIFPLGGAYGVNVN 191

Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL 241
              +  FI   ++H  LP L++ +  LGGW +GMRN II  + +D+I Y E+LG  +  +
Sbjct: 192 MGFNVPFIISVIYHAVLPVLTIILTSLGGWVLGMRNNIIPNLNSDFINYSENLGFKDYQI 251

Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
              A+KNA+LP +TG A+ +GL V+G +  + +FSYPG+G  ++  I + DY L+QG FL
Sbjct: 252 KSIAYKNALLPNLTGFAMSIGLSVSGVIIEESIFSYPGVGLYMITAINSLDYPLMQGIFL 311

Query: 302 VIILTVLVANFVIDLLYAIIDPRVR 326
           ++++ VL  N V+DLLY  +DPR+R
Sbjct: 312 MVVIAVLAGNLVVDLLYGFLDPRIR 336


>pir||H72420 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980560|gb|AAD35166.1|AE001694_2 (AE001694)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 335
           
 Score =  237 bits (598), Expect = 2e-61
 Identities = 130/333 (39%), Positives = 188/333 (56%), Gaps = 8/333 (2%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATL-----PEATKYL 56
           MS ++RYLL + + Y L  F  +TI F +PR +P DPI   + R  T      PE    L
Sbjct: 1   MSFVRRYLLPRLITYFLVVFVGLTIVFFLPRFLPSDPIQAYIDRLITQGGNLNPEYFNKL 60

Query: 57  HSYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPAL 116
                + +GL   LW QY++FWK +L GD G S + +P PV ++++++LP+   LLF   
Sbjct: 61  VETIKELYGLQGSLWNQYVNFWKRLLKGDFGPSYFQFPTPVMKLIRQSLPWTAWLLFVTT 120

Query: 117 VASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISG 174
           V SW +GN LG LAG   +KK    L  I   ++  PY+  A+ L  L  +    FPI G
Sbjct: 121 VISWIIGNILGGLAGYFSDKKWVKILDGIAMVIRPMPYYILALGLLILLAYIFPIFPIGG 180

Query: 175 AYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESL 234
            ++ G+  + SWE +   L H  LP LSL ++ +  W   M+ ++      DY++Y +  
Sbjct: 181 GFAIGMKFTFSWENLLILLKHAFLPALSLVLIGVFSWFQAMKLVVQSVKTEDYVKYAKMG 240

Query: 235 GVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDY 293
           GV E+ I+ ++  +NAMLPQ+TGLAL LG +  G +  ++VFSYPGIG +L   I   DY
Sbjct: 241 GVEERRIVRRYVIRNAMLPQITGLALSLGQIFGGALITEIVFSYPGIGSLLYNAIFTGDY 300

Query: 294 FLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
            L+ G   + IL V  +  VIDLLY + DPRVR
Sbjct: 301 NLLMGISTLSILLVTTSILVIDLLYPLFDPRVR 333


>pir||B72393 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980801|gb|AAD35389.1|AE001712_2 (AE001712)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 334
           
 Score =  230 bits (580), Expect = 2e-59
 Identities = 122/332 (36%), Positives = 184/332 (54%), Gaps = 7/332 (2%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFA----TLPEATKYLH 57
           M  IK YL+ + + Y+      +T+ F+IPR+ P DPI  +L+       T PEA   + 
Sbjct: 1   MKFIKSYLIPRLIQYVYMVVIGITLVFLIPRLSPVDPIEQILNTRLRIQNTTPEAVIKMR 60

Query: 58  SYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALV 117
               + +GL   LWEQY++ WK +L GD G S+ YYP  V  +++ +LP+ + LL    +
Sbjct: 61  EVMEELYGLKGTLWEQYVNLWKRLLKGDFGPSMVYYPASVISLIRNSLPWTIGLLTLTTL 120

Query: 118 ASWFVGNWLGALAGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
            SW +G  +GA+ G  K+      L  I   +   PY+ FA+ L  LF +    FP+ G 
Sbjct: 121 ISWVLGLVIGAILGYYKESFGSKILTGILMAINPIPYYIFALTLLLLFCYVFPIFPLGGG 180

Query: 176 YSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLG 235
           +S G   SLSW FI D + H TLP LSL ++   GW +G + ++    E DY+ Y   +G
Sbjct: 181 FSVGQKISLSWSFILDVIKHGTLPALSLIILGFAGWGLGTKILVQNLREEDYVVYARMMG 240

Query: 236 V-SEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYF 294
           + + KIL  +  +NAMLPQVTGL L LG +  G +  +++F+YPGIG +    +   DY 
Sbjct: 241 LRNSKILFSYVLRNAMLPQVTGLGLSLGGIFGGAMMTEILFTYPGIGTLAYNAVRANDYN 300

Query: 295 LIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           ++       I+ V  A  ++DLLY +IDPR+R
Sbjct: 301 VMIAISFFSIIAVATALLILDLLYPLIDPRIR 332


>pir||G82301 peptide ABC transporter, permease protein VC0619 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9655052|gb|AAF93785.1| (AE004147) peptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 328
           
 Score =  219 bits (552), Expect = 4e-56
 Identities = 114/323 (35%), Positives = 186/323 (57%), Gaps = 5/323 (1%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y LR+   Y      A T++FIIPR MPGDP+ ++ +  AT     + + +       ++
Sbjct: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAH-ATAQVTPERIEAMKQLLGFVE 61

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
            P + QY+++ K++L  +LG SI +YP  V E+L  A  + L L   A++ S+ +G+ LG
Sbjct: 62  GPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLG 121

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS-L 184
             A   +  + D ++ P    +QA P    A+L  + F   L WFP   AY+ G  P   
Sbjct: 122 IFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWT 181

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
           SW FIKD  +H  LP     +VQ+GG+ + MRN +I  +  DYI   +  G+SE +++  
Sbjct: 182 SWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFN 241

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           +A +NA+LP VT L++ LG+ + G + ++++F+YPG+G VL   I  +DY ++QG  L++
Sbjct: 242 YAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIM 301

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
            L +L  N + D+LY ++DPR+R
Sbjct: 302 TLFMLFFNLLADMLYVVLDPRLR 324


>pir||C71130 probable oligopeptide transport permease protein APPB - Pyrococcus
           horikoshii >gi|3257218|dbj|BAA29901.1| (AP000003) 323aa
           long hypothetical oligopeptide transport permease
           protein APPB [Pyrococcus horikoshii]
           Length = 323
           
 Score =  214 bits (540), Expect = 1e-54
 Identities = 118/328 (35%), Positives = 195/328 (58%), Gaps = 9/328 (2%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
           M  +K Y++++++  IL  FF + ++FII    PG+P  ++   ++T     +Y+ +   
Sbjct: 1   MGSMKVYIIKRSIQLILVIFFVLFLNFIIINAAPGNPAQLMAGEYST----EEYIKAIEA 56

Query: 62  QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
           + +GLDKP+  +++ + K +LHGDLG S Y Y +PV++++ E +   L L  P+++ ++ 
Sbjct: 57  R-WGLDKPIHIRFLIYMKNLLHGDLGYS-YRYLEPVSKLIMERIGKTLLLTVPSIILAFL 114

Query: 122 VGNWLGALAGKNK--KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYG 179
           VG WL  +A +    KLD  L  I     + P FW  +LL  +F  KLG  PI+G  +  
Sbjct: 115 VGVWLARIAARKPGGKLDVSLSIITLIFYSMPSFWLGLLLILVFGVKLGILPIAGMTNIR 174

Query: 180 IIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK 239
            + S SW+   D L H  LP  +L ++Q+  +    R  II +   DY++  +++G S+K
Sbjct: 175 AVYSSSWDKAFDILKHMVLPVTTLMLIQIPAYFRITRGAIIEQSTEDYVKTFDAVGFSKK 234

Query: 240 -ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
            I  K+ F+NA+LP VT L L+LG   +G   V++VF +PG+G +L+     +DY LI G
Sbjct: 235 HIFNKYIFRNAILPPVTILGLRLGYAFSGAALVEIVFGWPGMGRLLLDAAFARDYPLIMG 294

Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVR 326
            +LVI ++V VA F+ DLLYA++DPR+R
Sbjct: 295 IYLVIAVSVAVAIFITDLLYAVLDPRIR 322


>gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus]
           Length = 342
           
 Score =  214 bits (539), Expect = 1e-54
 Identities = 115/336 (34%), Positives = 196/336 (58%), Gaps = 12/336 (3%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIA-VLLSRF----ATLPEATKYLHSYFVQ 62
           +L+++ + YI+ +F  +TIDFI+PR++PG  +A ++ SR     +   +  +      VQ
Sbjct: 5   FLIKRGIYYIIVWFVGITIDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQILVQ 64

Query: 63  AFGL---DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVAS 119
             GL    +PL+ QY ++ K ++  + G+S+  +P  V+ I+ EA P+   ++ PA+VAS
Sbjct: 65  QLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAIVAS 124

Query: 120 WFVGNWLGALAGKNK-KLDNY-LMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS 177
           +F+GN LG +A  ++ K+ +Y ++ +  FL   P F    +L  +    L  FP  G Y+
Sbjct: 125 FFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTGGQYN 184

Query: 178 --YGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLG 235
               + P++S  FI   ++H  LP L+L +  L GW +GMRN +I  ++ DY+ Y   +G
Sbjct: 185 TFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQEDYMNYYRLMG 244

Query: 236 VSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFL 295
           VSEK++   A++ A+LP  T  ++ LG  V G V ++ +F+Y G+GY   Q I   DY L
Sbjct: 245 VSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYFFNQAITGLDYPL 304

Query: 296 IQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTE 331
           + G F +++  ++++NFV D++Y IIDPR     TE
Sbjct: 305 LSGIFFMLVTAMVLSNFVADIIYTIIDPRTSQEETE 340


>pir||C72284 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981749|gb|AAD36273.1|AE001776_9 (AE001776)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 334
           
 Score =  206 bits (518), Expect = 4e-52
 Identities = 109/333 (32%), Positives = 185/333 (54%), Gaps = 9/333 (2%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATL-----PEATKYL 56
           M+ IK YL+ + + Y +  F  ++  F +PR++P DP+   L ++ T      PE  + +
Sbjct: 1   MNFIKGYLIPRLLQYFIVTFLGLSAIFFLPRLLPTDPVKQQLQQYQTFGVYIPPEQQEEM 60

Query: 57  HSYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPAL 116
                Q +GL+  LWEQY+ FWK +L GD G S   +P  V++++ +ALP+ + LL    
Sbjct: 61  MRTLRQLYGLEGTLWEQYLDFWKRLLTGDFGPSFSRFPVSVSKVISQALPWTVGLLSLTT 120

Query: 117 VASWFVGNWLGALAGK-NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
           + SW +   +G + G   K+    L  +   ++  PY+  A++   LF +    FP+SG 
Sbjct: 121 ILSWIIAVIVGGIVGYYRKRWMEALDVVVMIIRPIPYYVMALICLILFAYVFPIFPLSGG 180

Query: 176 YSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEA-DYIRYLESL 234
              G   S   E I   + H TLP L+L +V +  W      +I+  +++ D++ Y ++ 
Sbjct: 181 IGIGQKLSFDLETILSIVKHGTLPALTLMIVGIA-WQFQSMKLIVQIVKSEDHVWYAKTA 239

Query: 235 GVSEKILMK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDY 293
           GV+EK++++ H  +NAMLP +T L LQ G + +G +  ++VF+YPGIG++L   IM  DY
Sbjct: 240 GVTEKMIVRNHVIRNAMLPMITQLGLQFGGIFSGALITEMVFAYPGIGWILYDAIMKADY 299

Query: 294 FLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
            LI G   +  + +  +  ++DL+Y + DPRVR
Sbjct: 300 NLIMGVMCISTIAITTSILLLDLIYPLFDPRVR 332


>emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
           Length = 315
           
 Score =  194 bits (489), Expect = 1e-48
 Identities = 116/314 (36%), Positives = 174/314 (54%), Gaps = 15/314 (4%)

Query: 16  YILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYI 75
           Y+ +    + I+F +PR+MPGDP+  L+     + E             GLD+PL+EQ+ 
Sbjct: 11  YLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVM---EELRAELGLDRPLYEQFA 67

Query: 76  SFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KN 133
           SF   +LH DLG S Y+   PVAEIL + + + L  +  +++   F G+ LGALAG    
Sbjct: 68  SFVSDILHLDLGYS-YHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPE 126

Query: 134 KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKDYL 193
           K+        F     +P ++ A+L  Y+F+F+LG FP  G Y    I S+        L
Sbjct: 127 KRTSRVTGLAFIVFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPEIGSI--------L 178

Query: 194 HHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLP 252
           HH  LP   + +       + MR  +I E +  Y  Y  + G+++  +L +H  KN+ LP
Sbjct: 179 HHLFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLP 238

Query: 253 QVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANF 312
            +T LAL  G L +G + ++++FS  G+G ++   IM +DY L+QGAFLVI LT L+AN 
Sbjct: 239 IITLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANM 298

Query: 313 VIDLLYAIIDPRVR 326
           + DLLYA+IDPRVR
Sbjct: 299 LADLLYALIDPRVR 312


>pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5457576|emb|CAB49067.1| (AJ248283) dipeptide ABC
           transporter, dipeptide-binding protein [Pyrococcus
           abyssi]
           Length = 310
           
 Score =  189 bits (476), Expect = 3e-47
 Identities = 114/325 (35%), Positives = 171/325 (52%), Gaps = 24/325 (7%)

Query: 6   KRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
           K ++++K +  ++  F      F I  ++PGDP   LL  FAT  +  K+ H       G
Sbjct: 3   KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQ-----LG 57

Query: 66  LDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
           LD+PL+ QYI +   VL GD G S+     PV+E++   L Y L L   A + +W  G  
Sbjct: 58  LDRPLYIQYIDWMSKVLRGDFGTSLVQ-GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLV 116

Query: 126 LGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
            G LA   K+   D  +M +  F  + PYFW  ILL  +F  KLG  PISG   +     
Sbjct: 117 FGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW----- 171

Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM- 242
                      H  LP L+L + Q+   A   R  ++  +E DYI    + G+ E++++ 
Sbjct: 172 ----------RHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVY 221

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
           KHA +NA++P VT + LQ+  L  G V  + VF +PG+G +L+  I  +DY ++Q   L+
Sbjct: 222 KHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLI 281

Query: 303 IILTVLVANFVIDLLYAIIDPRVRI 327
           I +  ++ANF+ D+ Y IIDPRVRI
Sbjct: 282 IGVLTVIANFLADITYTIIDPRVRI 306


>gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
           Length = 322
           
 Score =  181 bits (455), Expect = 9e-45
 Identities = 105/324 (32%), Positives = 179/324 (54%), Gaps = 15/324 (4%)

Query: 19  TFFFAVTIDFIIPRIMPGDPIAVLLSRF-------ATLPEATKYLH-SYFVQAFGLDKPL 70
           TFF  +T++FI+PR+MPG  +AV++S         AT   +   L  S    AFGL    
Sbjct: 3   TFFVVITVNFILPRLMPGSALAVVISLIEGQNGVAATAGSSAIALEVSQLEAAFGLTPAP 62

Query: 71  WE-QYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGAL 129
           W  QY  + + +   +LG SI YYP PV  I+   LP+ L L+    + ++F+G++LG++
Sbjct: 63  WYVQYAHYIQGIFTLNLGASITYYPTPVLSIILSGLPWTLFLVVVGAIIAFFLGSYLGSI 122

Query: 130 AGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWE 187
           AG N++   D  ++ I   L A P F   + L    + + G F IS        P+    
Sbjct: 123 AGFNRRSRKDLVILIITSILAALPSFVILMYLEMWLSVQHGIFLISFPSKINTSPNSIMA 182

Query: 188 FIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKHAFK 247
             + Y    TLP ++L    L G+ +GMRN +++ I  +Y+ Y E LG+    + K  +K
Sbjct: 183 LSRFY----TLPIIALMFTSLSGFVLGMRNNMLHTIRDNYVTYAEILGLDHNRIRKMVYK 238

Query: 248 NAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTV 307
           N++LP +T  A+ LGL ++ ++TV+ + + PG+G+     + ++D  L+QG FL I + +
Sbjct: 239 NSLLPNITAFAIILGLAISQSLTVEGLLTTPGVGFFFGLALTSKDLPLLQGIFLFIAIML 298

Query: 308 LVANFVIDLLYAIIDPRVRISYTE 331
           +++  +++ +Y I+DPR R+S +E
Sbjct: 299 ILSIAIVEAIYTILDPRARVSESE 322


>gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus solfataricus]
           Length = 333
           
 Score =  181 bits (454), Expect = 1e-44
 Identities = 109/329 (33%), Positives = 170/329 (51%), Gaps = 10/329 (3%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLS-----RFATLPEATKYLHSYFV 61
           ++L+R+    I+  F  + I + +    P  P   ++       FA  PE    L  Y  
Sbjct: 4   KWLIRRLASVIIAIFVTIVISWALLEFSPYSPANYIMQFINPQDFAQKPELYASLIDYLN 63

Query: 62  QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
                  PL       W   LHG+LG SI     PVAE++  ALP+ L ++  +++ S+F
Sbjct: 64  TLRPHGNPLINAVNYIWNT-LHGNLGFSIISNV-PVAELIAVALPWTLFIVVTSILISFF 121

Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYG 179
           +G  LG   G  +  K D+        L++ P + +A+LL Y+  F    FP  GAYS  
Sbjct: 122 LGIRLGQKLGYLRGTKTDSVATVSLSILRSVPIYIYAVLLIYILAFIYHIFPTGGAYSIH 181

Query: 180 IIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK 239
           + P  +  FI   L+H  LP L+L +V L GW + MR   IY +  D++ + E  GV + 
Sbjct: 182 VTPGFNLPFIASVLYHAFLPILTLTIVNLVGWILQMRANTIYVLGEDFVNFAEISGVKKD 241

Query: 240 IL-MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
           I+  K+  KNA+LP  T L + +G   +G+V V+  FSYPG+G +L+  I + DY    G
Sbjct: 242 IIEKKYIGKNAILPLYTSLIISIGFSFSGSVFVEQTFSYPGVGNLLINSITSNDYPTEMG 301

Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVRI 327
            F++II+ V+V N + DL Y+ +DPR ++
Sbjct: 302 VFIIIIVAVIVGNLIADLTYSFLDPRAKV 330


>gi|11499357 dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus
           fulgidus] >gi|7449122|pir||G69470 dipeptide ABC
           transporter, permease protein (dppB) homolog -
           Archaeoglobus fulgidus >gi|2648780|gb|AAB89482.1|
           (AE000980) dipeptide ABC transporter, permease protein
           (dppB) [Archaeoglobus fulgidus]
           Length = 354
           
 Score =  173 bits (435), Expect = 2e-42
 Identities = 111/342 (32%), Positives = 178/342 (51%), Gaps = 24/342 (7%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
           MS +  Y++ + ++ I T    +TI F+I RI+PGDPI  ++ +        K  H    
Sbjct: 19  MSSLPAYIITRFLMVIPTVLILLTIVFLILRIIPGDPITAMVGQKVPEEVLEKLRHEA-- 76

Query: 62  QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
              GLDKP  EQYI + K V  GDLG S+ +  +PV   + +  P  L L     + S  
Sbjct: 77  ---GLDKPYHEQYIEYLKGVFTGDLGKSMIWGKRPVIAEIMDHFPATLELTIFGFILSVL 133

Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQASPYF--WFAILLSYLFTFKLGWFPISGAYS 177
           +G   G++A   +  K+D+ +    Y + A   F  WF +LL  LF   L   PI G  +
Sbjct: 134 IGVATGSIAAFRRGSKVDSGMR--IYSIVAYTLFIPWFGMLLQMLFGVYLKVLPIGGRIT 191

Query: 178 YGIIP-------------SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
            G  P             +L++  + D L H  LP ++L +V  G +   +RN +I  + 
Sbjct: 192 PGNTPETITGLYVLDSILTLNFNSLIDALAHLALPAITLGIVLSGAYTRLLRNNLIDVLS 251

Query: 225 ADYIRYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVL 284
            D+I+   + GV  + ++ HA KNA +P VT + LQ  +L+AG V  +  FS+PG+G  L
Sbjct: 252 QDFIKAYRARGVRNRKVVFHAMKNAFIPVVTLMGLQFAILLAGAVLTESTFSWPGMGTFL 311

Query: 285 MQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           ++ I  +DY  +QGA +   + V + + V+D++YA++DPR+R
Sbjct: 312 IERIEYRDYTSVQGAIVFYAVFVALISLVVDVIYALLDPRIR 353


>pir||C83082 probable permease of ABC transporter PA4503 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9950743|gb|AAG07891.1|AE004864_3 (AE004864) probable
           permease of ABC transporter [Pseudomonas aeruginosa]
           Length = 336
           
 Score =  168 bits (421), Expect = 9e-41
 Identities = 103/335 (30%), Positives = 176/335 (51%), Gaps = 21/335 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           ++ R+  + I TFF    + F + R++PGDP+ V++      P+    +H+  +   GLD
Sbjct: 4   FIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQ----MHAEALHRLGLD 59

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           KPL++QY+ +   +  G+LG SI  + +PV           L L F A++ +  +G   G
Sbjct: 60  KPLYQQYLDYVGNLAQGNLGKSIRTH-EPVWNEFLTLFSATLELSFAAMLFAGTLGLLAG 118

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--YGIIPS 183
            +A   +    D+ +M I     + P FW+ +LL  LF+  LGW P+S      Y + P 
Sbjct: 119 VVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWTPVSDRIGVLYEVEPK 178

Query: 184 LSWEFIK-----------DYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
             +  I            D + H  LP + L  + L   A   R+ ++  +  DY+R   
Sbjct: 179 TGFMLIDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTAR 238

Query: 233 SLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
           + G+S  +++  HA +NA++P +T L LQ+G L+AG V  + +FS+PGIG  L+  I  +
Sbjct: 239 AKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISAR 298

Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           DY ++Q   L++   V++ NFV+D+LY + +PR+R
Sbjct: 299 DYPVVQNGILLVATLVILVNFVVDILYGLANPRIR 333


>gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T45537 moaB
           protein [imported] - Agrobacterium tumefaciens plasmid
           pTi15955 >gi|2665713|gb|AAB88473.1| (AF242881) moaB
           [Agrobacterium tumefaciens]
           Length = 313
           
 Score =  167 bits (419), Expect = 2e-40
 Identities = 101/322 (31%), Positives = 172/322 (53%), Gaps = 17/322 (5%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           YL ++    ++T    +T+ F++ R++PGDP+ ++L   A+ PE+   L     Q  GLD
Sbjct: 4   YLAKRLCFAVVTLLSVLTLIFLMVRVLPGDPVLMILGDQAS-PESVAALR----QRLGLD 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           +P+  QY+ F  + + GDLG S+    +PV E +   LPY L L F +LV    +G   G
Sbjct: 59  QPIGLQYVQFLGSAVKGDLGNSMVT-GRPVTEEVMSVLPYTLELTFASLVVGLILGVPTG 117

Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
             A  K  KL +Y++ +   +  S P F  AI+L  +F   L WFP+  A +   I +  
Sbjct: 118 VWAAVKRSKLPDYILRLISLIGLSLPGFVSAIVLLIVFAINLRWFPVISAGTGDGIVNRV 177

Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM-KH 244
           W+         TLP +SL ++ +       R+ ++  +  D++R   + G    +++ +H
Sbjct: 178 WQM--------TLPVISLALIMMAYITRVTRSAMLEVLNQDFVRTARAKGARPSVVIWRH 229

Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
           A  N ++P  T + L LG+L+  +V  ++VFS PG+G +++  +  +DY L+QG  +V  
Sbjct: 230 ALGNCLIPISTVVGLYLGILIGNSVLTEIVFSRPGLGKLILTALSQRDYTLLQGMVVVYT 289

Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
           L V++ N   DL Y + DPRV+
Sbjct: 290 LIVVIVNLATDLTYGLFDPRVQ 311


>pir||A72289 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981697|gb|AAD36225.1|AE001772_4 (AE001772)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 335
           
 Score =  166 bits (416), Expect = 4e-40
 Identities = 102/338 (30%), Positives = 173/338 (51%), Gaps = 22/338 (6%)

Query: 5   IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
           +K Y++ + ++     F  + + F++ RI+PGDP+  +L   A      +  H       
Sbjct: 3   LKNYVITRILLAAPMIFILLALIFLVLRIIPGDPVLAILGGKAPKEVIEQKRHE-----L 57

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
           GLDKP+  Q+  +   +L GDLG S     +PV E +KE  P  L L   A + +  +G 
Sbjct: 58  GLDKPIIVQFFDYIGDLLKGDLGKSTLT-GRPVWEEIKERFPATLELTLFAFIVAVLIGI 116

Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFP----------- 171
           + G+ A   ++  +D         + A P FWF +++ Y+F   L W P           
Sbjct: 117 FWGSFAAYKRDSGVDIGARMFSMVMYAVPVFWFGLMMQYIFGVILRWLPVGGRLSPTMNL 176

Query: 172 --ISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
             I+G YS   + + +WE +KD   H  LP L+L +V    +   +RN  +  +  D+++
Sbjct: 177 KVITGIYSIDALFTGNWEALKDVFEHLLLPGLTLGLVISSVFVRMVRNNTVLTLAQDFVK 236

Query: 230 YLESLGVSEKI-LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
              + G+ E++ L ++A KNA++P  T + LQ  LL+ G V  +  FS+PG+G  L+  I
Sbjct: 237 AARARGLKERVVLFRYALKNALVPIFTMMGLQFALLLGGAVLTETTFSWPGLGSYLVMKI 296

Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
             +D+  IQG  +   L V+V + ++D++ A+IDPRVR
Sbjct: 297 RYRDFPAIQGTVVFFALIVVVISILVDVINALIDPRVR 334


>gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-3) [Sulfolobus
           solfataricus]
           Length = 343
           
 Score =  164 bits (412), Expect = 1e-39
 Identities = 103/344 (29%), Positives = 178/344 (50%), Gaps = 20/344 (5%)

Query: 1   MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
           M   I  +++R+ +   +T    + + FI+  I+  +P+A  L+R  T P AT       
Sbjct: 1   MSINIVFFIIRRIINAFITLILLIILVFIMIHIIAPNPLA--LARLYTGPHATYTELEQV 58

Query: 61  VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
            + +GLD+PL+ Q I++   VLHG+ GI   Y   PV  ++ + LP  L L+ PA + S 
Sbjct: 59  AKQYGLDQPLYIQIINYIINVLHGNFGIDPTY-KVPVITLIGKYLPRTLELVIPATILSV 117

Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
            +G + GA+A   +NK LD  +  ++    ASP F  A++L  +  + L   P +G  + 
Sbjct: 118 VIGLFTGAIAASNRNKPLDYLVRGVYLVTWASPPFLIAVILQLVIAYYLRLLPPTGTVNP 177

Query: 179 GIIPSLS--------------WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
            + P  S              W +    +HH  LP +++ +V  G      R  ++  +E
Sbjct: 178 VLTPPKSITPFPLLNAMLAGDWPYFSSLVHHMVLPVIAIALVSFGIVTRIARASMLDYME 237

Query: 225 ADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYV 283
           +D+ +     G+S + ++     +NA +P VT +AL  G  VAG V ++ +F Y G+GY 
Sbjct: 238 SDFAKLSLMKGLSRRRVVYGVVLRNASIPLVTLIALLFGYSVAGAVVIEDIFQYHGMGYF 297

Query: 284 LMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
           + Q I + DY  I G  +++ + +++AN + D+LY ++DPRVRI
Sbjct: 298 ITQAIESLDYTSILGTTIIVGIAIIIANLIADILYGVLDPRVRI 341


>sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB
           >gi|2126889|pir||I40546 oligopeptide ABC transporter
           (permease) appB - Bacillus subtilis
           >gi|677946|gb|AAA62359.1| (U20909) AppB [Bacillus
           subtilis] >gi|2633493|emb|CAB12996.1| (Z99110)
           oligopeptide ABC transporter (permease) [Bacillus
           subtilis]
           Length = 317
           
 Score =  163 bits (409), Expect = 2e-39
 Identities = 95/323 (29%), Positives = 167/323 (51%), Gaps = 16/323 (4%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y++R+T++ I        + F+I +  PGDP+ +++      P+ ++     F++ +GL+
Sbjct: 4   YIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMD-----PKISQADREQFIEKYGLN 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
            P + QY+ +   ++ GD G SI     PV+E++   LP  L L+  + + +  +    G
Sbjct: 59  DPQYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPFG 118

Query: 128 ALAGKN--KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
            L+ K    K+D  +    +   A P FWF ++L  + +  LGWFP  G      + +L+
Sbjct: 119 VLSAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGG------VETLN 172

Query: 186 WEF-IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
            EF I D +HH  LP   L    + G     R+ ++  +  DYIR   + G  E ++L K
Sbjct: 173 TEFNIFDRIHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFKENRVLFK 232

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           H  +NA+LP +T   L +   + G+V V+ +F++PG+G + +     +    I  A  VI
Sbjct: 233 HGLRNALLPVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVI 292

Query: 304 -ILTVLVANFVIDLLYAIIDPRV 325
             + V+V N + D+LYAI+DPR+
Sbjct: 293 SAVLVVVGNLIADILYAIVDPRI 315


>pir||B72367 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981045|gb|AAD35617.1|AE001728_18 (AE001728)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 321
           
 Score =  161 bits (403), Expect = 1e-38
 Identities = 101/326 (30%), Positives = 169/326 (50%), Gaps = 15/326 (4%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +Y+ R+ +I I        I FII    PGD     L  +   P  ++       +  GL
Sbjct: 3   KYIARRLIIMIPELIIISFIVFIIMEAAPGD----FLDMYRLDPSVSQQFLEKMEKELGL 58

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKP   QY  + K VL GD G S +YY +PV+ ++ E +   + L   +L   W +G  +
Sbjct: 59  DKPWIVQYGIWLKNVLKGDFGYS-FYYRRPVSTLIWERVFATVILSVSSLAFEWLLGIIV 117

Query: 127 GALAGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G  +   K    D  L  + +   A P F+ AILL Y+   K GWFPI+G  S       
Sbjct: 118 GVFSALKKYSIWDKILTVVAFSGIALPGFFLAILLLYMAA-KTGWFPIAGMVSVNHNQMT 176

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNM---IIYEIEADYIRYLESLGVSEKIL 241
           +WE  KD   H  LP ++L     GG+A  MR M   ++  +  DY+ +  + G+ E+++
Sbjct: 177 TWEKFKDIASHLVLPTIAL---GFGGFASLMRYMRGSLLDVLNEDYVEFARAKGMPERVV 233

Query: 242 M-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
           + KHA +NA+ P +T L   +  ++ G V ++ +F++PG+G ++ Q ++ QD +++  + 
Sbjct: 234 IYKHALRNAINPMITFLGFSISNVLGGAVIIENIFAWPGMGRLIYQALLQQDIYIVMASA 293

Query: 301 LVIILTVLVANFVIDLLYAIIDPRVR 326
           ++  + +++ N V D+L A +DPRVR
Sbjct: 294 VISAIMLVIGNLVADVLLAAVDPRVR 319


>dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 333
           
 Score =  161 bits (403), Expect = 1e-38
 Identities = 107/338 (31%), Positives = 175/338 (51%), Gaps = 28/338 (8%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y+L + M+ I        I F I  ++PG+P   +L   A+ P+A   L     +  GL+
Sbjct: 4   YVLHRVMLLIPVLIGMTIITFSIVHLIPGNPAQTILGEQAS-PQAVAELE----ERLGLN 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPY---DLALLFPALVASWFVGN 124
           +P   QY  + + +L GD G S+    +  A I +E +PY    L L F A++ +  VG 
Sbjct: 59  EPYLVQYGYYVRDLLTGDFGTSL----RTRAPISEEIVPYLGATLELTFFAMLFAVVVGV 114

Query: 125 WLGAL-AGKNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFP----------- 171
             G + A K     +Y   +   L  S P FW A++  ++F  +LGWFP           
Sbjct: 115 NAGIISAWKQHSFFDYACMLVALLGVSMPIFWLALMQQWIFAQELGWFPAFGRDNPRDPI 174

Query: 172 --ISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
             I+G Y    I    W+ +   L H  LP ++L  + +   A   R+ ++  + +DYIR
Sbjct: 175 QSITGLYVLDAILHWRWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIR 234

Query: 230 YLESLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
            + + G S+ +++ KHA KNAM+P +T   LQ G+L+ G +  + +FS+PGIG  + + I
Sbjct: 235 TVHAKGSSQFVVIYKHALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAI 294

Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
             +DY +IQ   LV+ +  +V N ++DLLY+ IDPR++
Sbjct: 295 TYRDYPVIQSGILVVAIMFVVINLIVDLLYSYIDPRIK 332


>pir||E70343 transporter (OppBC family) - Aquifex aeolicus
           >gi|2983140|gb|AAC06743.1| (AE000692) transporter (OppBC
           family) [Aquifex aeolicus]
           Length = 327
           
 Score =  160 bits (401), Expect = 2e-38
 Identities = 99/322 (30%), Positives = 164/322 (50%), Gaps = 8/322 (2%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++L + +  I T      + F+I ++ PGD +  L       PE  + L       +GL
Sbjct: 3   KFILFRVLQAIPTLLGVTFLSFLIIKLAPGDYLDQLRLNPQISPETIERLK----HLYGL 58

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKPL  QY  + K  L  DLG S  Y+  PVAE++ E +P  L L   + + +W +   L
Sbjct: 59  DKPLLVQYFLWLKNALFFDLGYSFQYHA-PVAELILERIPNTLLLSVSSALFAWLLSIPL 117

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G LA   +N   D +++   Y   + P F+ A LL + F  K G  P+ G  S       
Sbjct: 118 GTLAAFKENSLFDRFVVGFSYTFMSVPSFFLAFLLLF-FASKTGILPVGGMQSPNFEQLS 176

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKH 244
             E + D L H  +P L+L +V L      +R+ ++  + +  +  L++ GV    L++H
Sbjct: 177 IPEKVLDILKHLIIPSLTLGLVSLASLTRLVRSSVLEILSSPMVTMLKAKGVGTFTLVRH 236

Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
             KNAM P  T L  ++  L++G   ++++  +PG+G +++  +++QD FL+ G   +  
Sbjct: 237 VLKNAMNPFTTLLGYEIASLISGAALIEIIVGWPGMGMLMLNAVLSQDLFLVMGGLYIGT 296

Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
           + +LV N + DLL A IDPRVR
Sbjct: 297 IMLLVGNLIADLLLAYIDPRVR 318


>sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
           >gi|1073367|pir||S47765 dipeptide transport system
           permease protein dppb - Escherichia coli
           >gi|349226|gb|AAA23703.1| (L08399) transmembrane protein
           [Escherichia coli] >gi|466682|gb|AAB18521.1| (U00039)
           dppB [Escherichia coli] >gi|1789965|gb|AAC76568.1|
           (AE000431) dipeptide transport system permease protein 1
           [Escherichia coli K12]
           Length = 339
           
 Score =  159 bits (399), Expect = 3e-38
 Identities = 100/340 (29%), Positives = 175/340 (51%), Gaps = 26/340 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++LR+  + I TF     + F    ++PGDP+ ++       PE     H+  +   GL
Sbjct: 3   QFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPER----HAQLLAELGL 58

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKP+W+QY+ +   V+HGDLGIS+     PV E         L L   A++ +  VG  +
Sbjct: 59  DKPMWQQYLHYIWGVMHGDLGISMKSRI-PVWEEFVPRFQATLELGVCAMIFATAVGIPV 117

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS------- 177
           G LA   +    D+  + +     + P FW+ ++L  L +      P+SG  S       
Sbjct: 118 GVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDD 177

Query: 178 ------YGIIPSLSW----EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADY 227
                 + +I +  W     FI D + H  LP + L  + L       R+ ++  +  DY
Sbjct: 178 SNPLTGFMLIDTAIWGEDGNFI-DAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDY 236

Query: 228 IRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQ 286
           IR   + G++  ++++ HA +NAMLP VT + LQ+G L+AG +  + +FS+PG+G  L+ 
Sbjct: 237 IRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLID 296

Query: 287 GIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
            +  +DY ++QG  L++   +++ N ++DLLY +++PR+R
Sbjct: 297 ALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336


>emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter integral membrane
           protein [Streptomyces coelicolor]
           Length = 330
           
 Score =  155 bits (388), Expect = 7e-37
 Identities = 103/329 (31%), Positives = 172/329 (51%), Gaps = 25/329 (7%)

Query: 3   SGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQ 62
           +G  R +L++ +  +   F   T+ F + R+  GDP+ +LL   AT  +     HS    
Sbjct: 23  TGPLRGVLKRLLTALFVLFCTATVAFFLVRLS-GDPVKILLPPDATAEQERVLRHS---- 77

Query: 63  AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
             GLD+ L+ QY+ + + +LH D G S+ Y  +PV+EIL + LP  + L   AL  +  V
Sbjct: 78  -LGLDQSLFAQYLDYLRGLLHLDFGDSLVY-GQPVSEILADRLPATIELAAAALAVTLVV 135

Query: 123 GNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGI 180
               G +A   + +  D  +M      Q++P FW  ILL  +F   L   P SG   YG 
Sbjct: 136 AIPAGIVAAMRRGRGTDKTVMTGVLLGQSTPPFWVGILLILVFAVWLRALPASG---YGT 192

Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
           + +L             LP ++L +  +   A  +R+ +I  + +D+IR   + G    +
Sbjct: 193 LANL------------VLPAVTLAVYSVAVVARLLRSSLIDVLSSDHIRSARAKGFGPLQ 240

Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
           ++++H  +NA LP VT + L++G L+ G +  + VFS+PG+G + ++ I N+D+ L+Q  
Sbjct: 241 VVLRHGLRNASLPVVTVVGLEVGNLLGGAILTERVFSWPGVGQLTVEAISNRDFPLVQAT 300

Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
            L    T +V N ++DL Y+ +DPRVR S
Sbjct: 301 VLFFAATFVVVNLLVDLSYSFLDPRVRTS 329


>pir||F75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
           (strain R1) >gi|6458683|gb|AAF10534.1|AE001948_3
           (AE001948) peptide ABC transporter, permease protein
           [Deinococcus radiodurans]
           Length = 345
           
 Score =  155 bits (387), Expect = 9e-37
 Identities = 109/345 (31%), Positives = 164/345 (46%), Gaps = 31/345 (8%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHS------YFV 61
           YL+R+ +  +L       + F   R++PG P   +L    T        H       +F 
Sbjct: 4   YLIRRLLRTLLVMLGISLLVFTFVRLIPGGPCTAILGERGTPESIAACNHDRGFDRPWFF 63

Query: 62  QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
            A G    L  QY  +   +L GDL  SI     PV E LK   P  + L F AL+ +  
Sbjct: 64  NAGGEGGALNAQYPEYMAGLLRGDLDKSIITQI-PVKEDLKTRFPATVELAFAALIFALL 122

Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY- 178
           VG   G +A   +N   DN    I     + P FW  +LLSY F  KLGW P S      
Sbjct: 123 VGLPAGIIAALRRNSLWDNLATTISLIGVSMPVFWLGLLLSYFFGVKLGWLPPSARLGTE 182

Query: 179 -------------GII---PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYE 222
                        G++   P+ +W+  K    H  LP ++L  + L   A   R+ ++  
Sbjct: 183 FDLQSITGMNVLDGLLRGQPAAAWDAAK----HLVLPAIALGTIPLAIIARITRSSLLDV 238

Query: 223 IEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIG 281
           +  DY+R   + G+S + I +KHA +NA+LP VT + LQ+G L+ G V  + +FS+ G+G
Sbjct: 239 LGQDYVRTARAKGLSARNITLKHALRNALLPIVTVIGLQIGGLLGGAVLTETIFSWNGVG 298

Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
             L   I  +D+F+IQG  + I L + + N ++DL YA +DPR++
Sbjct: 299 SWLYDAISARDFFVIQGGVIFIALVISLVNLLVDLSYAALDPRIQ 343


>pir||B38447 oligopeptide permease oppB homolog - Bacillus subtilis
           >gi|580897|emb|CAA39788.1| (X56347) OppB [Bacillus
           subtilis]
           Length = 311
           
 Score =  153 bits (384), Expect = 2e-36
 Identities = 98/333 (29%), Positives = 176/333 (52%), Gaps = 29/333 (8%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +Y+ R+ +  I+T F  VT+ F + +  PG P +         PE    L++++    GL
Sbjct: 3   KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKPL+ QY+S+ K+V   D G S  Y  + V +++    P    L   A++ +  +G   
Sbjct: 56  DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALGLGVLF 115

Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIP 182
           G +A   + K  +Y + I      S P F  A +L Y+F+ KLG FP++G  +++Y  +P
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL- 241
           S++           ++P    F+ +L       R+ +I  + +DYIR  ++ G+S   L 
Sbjct: 176 SIALA---------SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSRPALT 218

Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
           ++HA +NA+LP VT +      ++ G+  ++ +F  PG+G   +  I N+DY +I G  +
Sbjct: 219 VRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTV 278

Query: 302 VIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
              + +L+   ++D+LY IIDPR+++S  ++GA
Sbjct: 279 FFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA 311


>sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|7442405|pir||H69668 oligopeptide transport system
           permease protein oppB - Bacillus subtilis
           >gi|2633498|emb|CAB13001.1| (Z99110) oligopeptide ABC
           transporter (permease) [Bacillus subtilis]
           Length = 311
           
 Score =  153 bits (384), Expect = 2e-36
 Identities = 97/333 (29%), Positives = 176/333 (52%), Gaps = 29/333 (8%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +Y+ R+ +  I+T F  VT+ F + +  PG P +         PE    L++++    GL
Sbjct: 3   KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKPL+ QY+S+ K+V   D G S  Y  + V +++    P    L   A++ +  +G   
Sbjct: 56  DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLF 115

Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIP 182
           G +A   + K  +Y + I      S P F  A +L Y+F+ KLG FP++G  +++Y  +P
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-IL 241
           S++           ++P    F+ +L       R+ +I  + +DYIR  ++ G+S   + 
Sbjct: 176 SIALA---------SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSRPAVT 218

Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
           ++HA +NA+LP VT +      ++ G+  ++ +F  PG+G   +  I N+DY +I G  +
Sbjct: 219 VRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTV 278

Query: 302 VIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
              + +L+   ++D+LY IIDPR+++S  ++GA
Sbjct: 279 FFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA 311


>pir||F72451 probable peptide transport system permease protein APE2258 -
           Aeropyrum pernix (strain K1) >gi|5105959|dbj|BAA81270.1|
           (AP000064) 339aa long hypothetical peptide transport
           system permease protein [Aeropyrum pernix]
           Length = 339
           
 Score =  153 bits (383), Expect = 3e-36
 Identities = 92/334 (27%), Positives = 164/334 (48%), Gaps = 18/334 (5%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           RY + + +  + T     T+ FI+ R++PGDP+   L   +  PE  + +     +  GL
Sbjct: 9   RYAVTRALAIVPTVLILYTVVFIVLRVIPGDPVTAALGTRSIPPEELEAIR----ERLGL 64

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           D+PLW QYI +   V+ GD G S+  Y +PVA  + E  P  L L     + S  +G   
Sbjct: 65  DQPLWRQYIDYLLGVMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGS 124

Query: 127 GALAGKNKKLDNYLMPIFYFLQASPYF-WFAILLSYLFTFKLGWFP-------------I 172
           G +A     L + L+     +  + +  W  ++L Y+F+ KLG  P             +
Sbjct: 125 GVVAAFRGGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVV 184

Query: 173 SGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
           +G Y    I + +   +   + H  LP L+L +V  G +   +R  +   + ++      
Sbjct: 185 TGLYVLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYR 244

Query: 233 SLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQD 292
           + G+ E  +  H  + +++P +T + LQ  +L+ G V  +  FS+PG+G +L++ I  +D
Sbjct: 245 ARGLRESRIAVHMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRD 304

Query: 293 YFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           Y  IQG  +     V + + ++D++YAI++PRVR
Sbjct: 305 YSTIQGVTVFFAFMVGLVSLIVDIIYAIVNPRVR 338


>pir||C64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
           (strain 26695) >gi|2313397|gb|AAD07368.1| (AE000548)
           dipeptide ABC transporter, permease protein (dppB)
           [Helicobacter pylori 26695]
           Length = 334
           
 Score =  152 bits (379), Expect = 8e-36
 Identities = 101/337 (29%), Positives = 167/337 (48%), Gaps = 22/337 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           +++++ +  I T F    I F++  ++PGDP  V+L       +A +       + FGL+
Sbjct: 4   FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGE-----KANQAAIDALREQFGLN 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           KPL EQY  F   VLHG+ G SI    +PV     +  P  + L   AL  +  +G  +G
Sbjct: 59  KPLIEQYFFFINNVLHGNFGTSIMT-GEPVMHEFWQRFPATVELALIALFMALVLGISVG 117

Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPI------------- 172
            LA  K   + +Y    F     S P FW  ++L Y+F+ +LGW P+             
Sbjct: 118 VLAAIKRYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGP 177

Query: 173 SGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
           +G Y    + +  +    D + H  LP + L  V     A   R  +    + DY+R  +
Sbjct: 178 TGLYLIDSLIARDYGAFMDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAK 237

Query: 233 SLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
           + G S  +++  H  +NA++P  T   L L  L+ G++  + VFS+PGIG  ++  +  +
Sbjct: 238 AKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQR 297

Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
           D+ +IQ   L+I +  + AN ++D+LYA IDPR+R+S
Sbjct: 298 DFPIIQSMSLIIAMMYIGANLLVDILYAFIDPRIRLS 334


>pir||G71951 dipeptide transport system permease protein - Helicobacter pylori
           (strain J99) >gi|4154809|gb|AAD05865.1| (AE001465)
           DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN
           [Helicobacter pylori J99]
           Length = 334
           
 Score =  151 bits (377), Expect = 1e-35
 Identities = 103/337 (30%), Positives = 169/337 (49%), Gaps = 22/337 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           +++++ +  I T F    I F++  ++PGDP  V+L       +A +       + FGL+
Sbjct: 4   FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGE-----KANQAAIDALREQFGLN 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           KPL EQY  F   VLHG+ G SI    +PV     +  P  + L   AL  +  +G  +G
Sbjct: 59  KPLIEQYFFFINNVLHGNFGTSIMT-GEPVMHEFWQRFPATVELALIALFMALVLGISVG 117

Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYS-------- 177
            LA  K   + +Y    F     S P FW  ++L Y+F+ +LGW P+ G  S        
Sbjct: 118 VLAAIKRYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGP 177

Query: 178 ---YGIIPSLSWEF--IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
              Y I   ++ ++    D + H  LP + L  V     A   R  +    + DY+R  +
Sbjct: 178 TGLYLIDSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAK 237

Query: 233 SLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
           + G S  +++  H  +NA++P  T   L L  L+ G++  + VFS+PGIG  ++  +  +
Sbjct: 238 AKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQR 297

Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
           D+ +IQ   L+I +  + AN ++D+LYA IDPR+R+S
Sbjct: 298 DFPIIQSMSLIIAMMYIGANLLVDVLYAFIDPRIRLS 334


>dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 322
           
 Score =  151 bits (377), Expect = 1e-35
 Identities = 92/324 (28%), Positives = 172/324 (52%), Gaps = 8/324 (2%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           + ++R+  I I   F    I F+I + MPGDP   L   + + P  ++ +     + +GL
Sbjct: 3   KLIIRRCFIMIPQLFLLSVIVFMIAQAMPGDP---LTGFYQSNPNISQEVIDAQRERYGL 59

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           + P + QY+ +    L GD G S Y    PV E++   +   + L    L+ ++ +   L
Sbjct: 60  NDPWYVQYVRWVGNALQGDFGDS-YQQRIPVTEVIDNRIWNTIWLSLLTLIMTYMIAIPL 118

Query: 127 GALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G L+G+  +  LD  +    Y   A+P F  ++L+ +LF F+LGWFP  G+ S    P  
Sbjct: 119 GLLSGRYNDTLLDRAITGYTYVGFAAPVFITSLLMLFLFGFQLGWFPTGGSVSPHAQPG- 177

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMK 243
           ++ ++   ++H  LP  SL ++        +R+ +I + ++DY+R   + G SE+ I +K
Sbjct: 178 TFGYVLSKINHMLLPAFSLAIITTVSTVQYLRSELIDQKQSDYVRTARARGASERRIYLK 237

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           H  +N++LP       +L  L+ G + V+++FSYPG+G + +  IM +DY ++    L+ 
Sbjct: 238 HLPRNSLLPIAAFFGYELTGLIGGTIFVEMIFSYPGMGQLFLSSIMQRDYSVVTTMVLLF 297

Query: 304 ILTVLVANFVIDLLYAIIDPRVRI 327
            +  ++   + D++ +I+DPR++I
Sbjct: 298 GVASILGALLSDIILSIVDPRIKI 321


>sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLIC
           >gi|7442416|pir||G64820 probable oligopeptide transport
           protein b0831 - Escherichia coli
           >gi|1787053|gb|AAC73918.1| (AE000185) putative transport
           system permease protein [Escherichia coli K12]
           >gi|4062408|dbj|BAA35526.1| (D90721) Hypothetical
           protein o314 [Escherichia coli]
           >gi|4062416|dbj|BAA35534.1| (D90722) Hypothetical
           protein o314 [Escherichia coli]
           Length = 306
           
 Score =  150 bits (374), Expect = 3e-35
 Identities = 98/322 (30%), Positives = 162/322 (49%), Gaps = 24/322 (7%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y++++ +  I T F    + F+   ++PGDP     +R    PEA   +     Q  GLD
Sbjct: 4   YVIKRLLGLIPTLFIVSVLVFLFVHMLPGDP-----ARLIAGPEADAQVIELVRQQLGLD 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           +PL+ Q+  +    + GD G+S+    +PVA+ +       L L   ++V +   G   G
Sbjct: 59  QPLYHQFWHYISNAVQGDFGLSMVSR-RPVADEIASRFMPTLWLTITSMVWAVIFGMAAG 117

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
            +A   +N+  D   M I     + P F   +LL  +F+ +LGW P  GA S+       
Sbjct: 118 IIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSW------- 170

Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKH 244
                    H+ LP L+L        A   R   +  +  DY+R   + GVSE  +++KH
Sbjct: 171 --------QHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKH 222

Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
             +NAM+P VT + LQ G L+ G++ V+ VF++PG+G +L+  +  +DY +IQ   L+  
Sbjct: 223 GLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFS 282

Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
           L  ++ N V+D+LYA I+P +R
Sbjct: 283 LEFILINLVVDVLYAAINPAIR 304


>gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis]
           Length = 309
           
 Score =  150 bits (374), Expect = 3e-35
 Identities = 98/325 (30%), Positives = 168/325 (51%), Gaps = 25/325 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           RY+L++ +   LT F   T+ F + +++PG P    L     L  A K +    ++ +GL
Sbjct: 3   RYVLKRFVYMALTLFLITTLTFFLMKLLPGSP----LKNQEKLSPAQKEI---ILEKYGL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           + P+  QY  +   +  GDLG+S  Y  +PV +++ + +     L   A++   F+G  L
Sbjct: 56  NDPVPVQYARYLGNLAKGDLGVSFQYDNRPVTDMIVDRIGPSAQLGLQAIILGTFIGLIL 115

Query: 127 GALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G +A  +N    +Y   I   L  S P F FA LL Y    KLGWFP+  A+  G  P  
Sbjct: 116 GIVAALRNNTWVDYGATIISVLGMSVPSFVFAALLQYFVGVKLGWFPV--AFWKG--PEF 171

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMK 243
           +            +P ++L M  +   A   R  +I  ++ADYI   ++ G+S+  I++K
Sbjct: 172 T-----------VMPTIALSMAVIATIARFSRAELIEVMQADYILTAKAKGISQGVIIVK 220

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA +NA++P VT L   +  L+ G + ++ +++ PG+G   ++ I   DY +I G  +  
Sbjct: 221 HALRNALIPVVTILGPMVAALITGTLVIEQIYAVPGLGEQFVKSITVNDYTVIMGTTIFY 280

Query: 304 ILTVLVANFVIDLLYAIIDPRVRIS 328
               ++  F++D+LY IIDPR+R++
Sbjct: 281 SAIFILVIFIVDILYGIIDPRIRLA 305


>dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [Ochrobactrum
           anthropi]
           Length = 313
           
 Score =  148 bits (371), Expect = 7e-35
 Identities = 106/324 (32%), Positives = 172/324 (52%), Gaps = 23/324 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTID-FIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
           RY++ + +++ +     VTI  F+   ++PGDP+ +++       E     H       G
Sbjct: 5   RYVISR-LLHAIPVVLGVTICVFLTIHLVPGDPVRIMMHGRIGDDEVAAIYHQ-----LG 58

Query: 66  LDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
           +D+PL  QY  F +  L G+LG SI     PV +++ E L   L LL  + + S  +   
Sbjct: 59  MDRPLLVQYFDFVRHALTGNLGTSIVQ-KAPVTDLVLEKLWPTLLLLAFSTLISVLIAIP 117

Query: 126 LGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
           LG +A   +N+  D+ +  +     A P +W  +LL  LF   LGWFPISG     +   
Sbjct: 118 LGLVASFYRNRWPDHAIRLVSSIGFAMPSYWIGLLLILLFGLWLGWFPISGIGQGHL--- 174

Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAI-GMRNMIIYEIEADYIRYLESLGVSE-KIL 241
                  + LHH  LP L++ +  LG   I  +R+ ++  + ++YI    + GVSE +IL
Sbjct: 175 -------EILHHLFLPALTISLF-LGPVLIQSLRSSMLDVLTSEYIEVARAKGVSEWRIL 226

Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
            KH  +NA++P +T LA+ +  L++G V V+ VF  PG+G +L++ +  +DY LIQG  L
Sbjct: 227 TKHVMRNALIPVITVLAINISWLLSGAVIVEYVFGLPGLGSLLVRSVGYRDYPLIQGLSL 286

Query: 302 VIILTVLVANFVIDLLYAIIDPRV 325
           V  + V+V N + DL Y ++D RV
Sbjct: 287 VFGVLVVVINLLADLSYMLVDRRV 310


>sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
           >gi|11279742|pir||T44636 dipeptide transport protein
           dppB [imported] - Bacillus firmus
           >gi|1813496|gb|AAB41689.1| (U64514) dipeptide
           transporter protein dppB [Bacillus firmus]
           Length = 333
           
 Score =  147 bits (368), Expect = 2e-34
 Identities = 96/335 (28%), Positives = 170/335 (50%), Gaps = 22/335 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y +R+ ++ I        + F I  ++PG+P   +L   A+ P+A   L     +  GL+
Sbjct: 4   YAMRRLLLLIPVLIGMTIVTFSIIHLIPGNPAQTILGEQAS-PQAIADLE----ERLGLN 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           +P W QY  + K +  GDLG S+    KP+ E +   L   + L   A++ +  +G   G
Sbjct: 59  EPYWVQYGLYMKDLATGDLGTSLRTN-KPIMEEIWPYLAATIELTIFAMIFAIIIGVNAG 117

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPI------------- 172
            ++   +N   D   M I     + P FW A++  ++F  +LGW P              
Sbjct: 118 IVSAWKQNSWFDYLSMFIALVGVSMPIFWLALMEQWIFAQELGWLPAFGRDNPRDPIIST 177

Query: 173 SGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLE 232
           +G Y +  I S  ++   + + H  LP ++L  + +   A   R+ ++  + +DYIR + 
Sbjct: 178 TGLYVFDTIISGQFDKTWESIKHLILPGIALGTIPMAIIARMTRSSMLEVLRSDYIRTVN 237

Query: 233 SLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQ 291
           + G  + +++ KHA KNA++P +T + LQ G L+ G +  + +FS+PGIG  + + I  +
Sbjct: 238 AKGSGQGVVIYKHALKNALIPVLTVVGLQTGNLLGGAILTETIFSWPGIGRYIFEAINYR 297

Query: 292 DYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           DY +IQ   LV+    ++ N  +DLLY+ IDPR++
Sbjct: 298 DYPVIQSGILVVATIFVLINLFVDLLYSYIDPRIK 332


>emb|CAC05748.1| (AL391751) putative peptide transport system integral membrane
           protein [Streptomyces coelicolor]
           Length = 307
           
 Score =  145 bits (363), Expect = 6e-34
 Identities = 100/323 (30%), Positives = 162/323 (49%), Gaps = 23/323 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           RY++R+ +  I  F  A  + F++  +M GDPIA L       P     L       FGL
Sbjct: 3   RYVVRRLLQMIPVFIGATLLIFLMVNVM-GDPIAGLCGDRECDPATAAQLR----HEFGL 57

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           D+P+W+QY ++   V  GD G +  +  +PV E++  A P  + L   A++    VG  L
Sbjct: 58  DQPVWQQYATYMGNVFTGDFGTA--FNGQPVTELMGTAFPVTIRLTIVAILFEIVVGIIL 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G L G  + + +D  ++ +   + + P F   +LL  L   K GW          I P++
Sbjct: 116 GVLTGLRRGRPVDTGVLLLTLVVISVPTFVTGLLLQLLLGVKWGW----------IDPAV 165

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
           S E     L    +P L L  V L       R  I     +DY+R   + G+   +++ +
Sbjct: 166 SSEAAFGEL---IVPGLVLASVSLAYVTRLTRTSIAENRRSDYVRTAIAKGLPRHRVITR 222

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           H  +N+++P VT +   +G L+ G +  + +F+  G+GY L QGI+ Q+   + G   V+
Sbjct: 223 HLLRNSLIPVVTFIGTDIGALMGGAIVTERIFNIHGVGYQLYQGILRQNTQTVVGFVTVL 282

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
           +L  LVAN V+DLLYA++DPR+R
Sbjct: 283 VLVFLVANLVVDLLYAVLDPRIR 305


>emb|CAC11408.1| (AL445063) dipeptide transport system permease protein (DPPB)
           related protein [Thermoplasma acidophilum]
           Length = 343
           
 Score =  145 bits (362), Expect = 8e-34
 Identities = 94/337 (27%), Positives = 166/337 (48%), Gaps = 19/337 (5%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           +++R+ +  I T    +   F +  I+  +P+A L   +A  P A++       + +GL+
Sbjct: 8   FIIRRAIYAIFTLLILIVFIFTLIHIIAPNPLA-LARLYAGNPHASQSELIGIEKKYGLN 66

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
            P+++Q I++ K V  G+LG   Y + +PV +++ E LP  L  +   +V S  +G + G
Sbjct: 67  LPIYDQVINYIKDVFIGNLGYD-YLHDQPVLKLIGEYLPITLEFVLTGIVLSVIIGLFTG 125

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP--- 182
           A A   + K  D  +  ++    + P F  A +L     + L   P +G  +  + P   
Sbjct: 126 AYAAARRRKPADYTIKGLYLATWSMPTFLLAAVLQLYIAYDLKLLPATGMVNPTLKPPPN 185

Query: 183 -----------SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYL 231
                      +  W +    +HH  LP LS+ ++  G      R+ ++  ++ DY R  
Sbjct: 186 VLAFPLLNAIYAHDWVYASSVIHHMILPTLSVALLSFGVITRLTRSTMLDIMDMDYFRLT 245

Query: 232 ESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMN 290
              G+   K +   A +NA +P VT + L     + G V ++ +FSY G+GY ++Q + N
Sbjct: 246 IMKGIPRRKAVYGVALRNAAIPLVTYIVLAFAYAMGGAVVIEDIFSYHGMGYYIVQAVYN 305

Query: 291 QDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
            DY  I G  ++I + V+VAN V D+LY I+DPRVR+
Sbjct: 306 LDYPGILGTTIIIAIAVIVANLVADVLYGILDPRVRL 342


>emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related protein [Thermoplasma
           acidophilum]
           Length = 331
           
 Score =  143 bits (357), Expect = 3e-33
 Identities = 94/322 (29%), Positives = 166/322 (51%), Gaps = 5/322 (1%)

Query: 9   LLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDK 68
           + RK +  ++   F V I +++ RIMPG P+ + L       E  K      +  +G  K
Sbjct: 12  ITRKIIQDVVLIIFVVVILYVVFRIMPGSPVDLFLHGLKHPTEQEKITIEKQLGLYG-GK 70

Query: 69  PLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGA 128
                ++ + + +   + G   YY  + V  ++K+ALPY L L   A V S+ +G  LG 
Sbjct: 71  FSLTNFLIYLRDMFTFNFGED-YYTGQSVIFVIKQALPYTLLLFGSAAVISFAIGIPLGI 129

Query: 129 LAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSW 186
                + KK ++ ++     L + P+F FAI+        L  FP+   +    I   + 
Sbjct: 130 YTSFKRGKKSESGIITASTLLNSIPFFVFAIIFFVYLAGDLHIFPLRSIFPISYIVHPTL 189

Query: 187 EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHA 245
           + I+  L++  +P + L +V+  G  + MR  ++  +  D+I    + GVSE+ I+  HA
Sbjct: 190 KSIELILYYLAMPIIVLVIVEAAGHLLTMRAAMVSVLGEDFITTARAKGVSERGIMFHHA 249

Query: 246 FKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIIL 305
            +NAM+P  T +AL+   L++G V V+V+FS  G+G VL    + +DY + +GA  VI +
Sbjct: 250 ARNAMIPVSTRMALEFAFLMSGAVIVEVIFSIHGMGTVLYDATLQEDYPVSEGALFVISI 309

Query: 306 TVLVANFVIDLLYAIIDPRVRI 327
            V++A   ID ++A +DPR+++
Sbjct: 310 IVILAYSAIDFIHAWLDPRIKV 331


>dbj|BAB04287.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
           Length = 314
           
 Score =  141 bits (353), Expect = 9e-33
 Identities = 92/321 (28%), Positives = 155/321 (47%), Gaps = 21/321 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y+ ++    I    FA+ I F+  R+ P DP    L+     P  T+ L +     FGLD
Sbjct: 4   YIAKRIFAVIPIVLFAIFIMFVFIRLSPVDPAEAYLTAANIHP--TEELLAEKRHEFGLD 61

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           +P+  QY+     V   D G S Y   +PV + +   +P  L L   ++  +  +   LG
Sbjct: 62  QPMAVQYVQTIVKVFQLDFGHS-YVTNQPVWDEVTARMPATLQLAVSSIFLAVLISIPLG 120

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
            L+   KN  +D +   + Y   + P FW   LL + F+ KL  FP+ G  S+       
Sbjct: 121 FLSAIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIFFFSVKLNLFPVEGRGSWA------ 174

Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM-KH 244
                    H  LP ++L +  +  +   +R  ++ +++  Y+ Y  + G+ EK++M KH
Sbjct: 175 ---------HLVLPTVTLSLALIAIYTRLLRASVLEQMQESYVLYARTRGIKEKVIMVKH 225

Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
             K A+ P +TGL + +G L+ G + V+ VFS+PG G   +  I N+D  +IQ   L+  
Sbjct: 226 VLKLAISPVITGLGMNVGKLLTGTIIVEQVFSWPGFGRYFVDAIFNRDIPVIQCYVLLAA 285

Query: 305 LTVLVANFVIDLLYAIIDPRV 325
              +V N ++DL+   +DPR+
Sbjct: 286 CLFIVCNLIVDLVQLAMDPRI 306


>sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|1074011|pir||E64184 oligopeptide transport system
           permease protein oppB - Haemophilus influenzae (strain
           Rd KW20) >gi|1574678|gb|AAC22777.1| (U32792)
           oligopeptide ABC transporter, permease protein (oppB)
           [Haemophilus influenzae Rd]
           Length = 306
           
 Score =  141 bits (352), Expect = 1e-32
 Identities = 90/323 (27%), Positives = 163/323 (49%), Gaps = 23/323 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++ ++ +  + T F  +T  F + R+ PG P     S  A  PE    + +     + L
Sbjct: 3   KFIFKRLLEALPTLFILITFSFFLMRLAPGSPFT---SERAYPPEVMANIEA----KYHL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           ++PL++QY  + + +  GD G S  Y  + V +++  A P  + L   A   +  +G   
Sbjct: 56  NEPLYKQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTA 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G LA   +N + D  LM         P F FA +L  +F   LGW P +G ++ G     
Sbjct: 116 GTLAALNQNSRWDYILMSFSMLGVIMPSFVFAPVLVLIFAIYLGWLP-AGGWNGGTAM-- 172

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
                     +  LP  SL +  + G A  MR  +I  + +++IR  ++ G+S  +I++K
Sbjct: 173 ----------YMILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILK 222

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA + A+LP +T L      ++ G++ ++ VF  PG+G + + G +N+DY L+    +++
Sbjct: 223 HALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILV 282

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
               ++ N ++D+LYAIIDP++R
Sbjct: 283 GTLTILFNAIVDILYAIIDPKIR 305


>sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKB
           >gi|628767|pir||S39595 NikB protein - Escherichia coli
           >gi|404846|emb|CAA51660.1| (X73143) NikB [Escherichia
           coli]
           Length = 314
           
 Score =  141 bits (351), Expect = 1e-32
 Identities = 104/324 (32%), Positives = 167/324 (51%), Gaps = 23/324 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           RY+LR+ ++ I     A  I F+I R+  GDP    L R + LP   + L S      GL
Sbjct: 3   RYVLRRFLLLIPMVLAASVIIFLIVRLGTGDPALDYL-RLSNLPPTPEMLASTRTM-LGL 60

Query: 67  DKPLWEQYISF-WKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
           D+PL+ QY ++ WKA LH D GIS +   +PV + +   LP  L L   ALV        
Sbjct: 61  DQPLYVQYGTWLWKA-LHLDFGIS-FASQRPVLDDMLNFLPATLELAGAALVLILLTSVP 118

Query: 126 LGALAGKNK-KLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
           LG  A +++ +L ++ +    FL  S P FW A LL   F+  L W P  G   YG    
Sbjct: 119 LGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG---YG---- 171

Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL-M 242
             W+       H  LP +S+  + L   A  +R  ++      ++ +    G+++K    
Sbjct: 172 -GWQ-------HIILPAVSIAFMSLAINARLLRPSMLDVAGQRHVTWARLRGLNDKQTER 223

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
           +H  +NA LP +T + + +G L+ G + ++ +F++PG+G   +  I N+DY +IQ   L+
Sbjct: 224 RHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLM 283

Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
           +++  +V N ++DLL A +DPR+R
Sbjct: 284 MVVVFVVCNLIVDLLNAALDPRIR 307


>pir||F72215 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4982325|gb|AAD36812.1|AE001813_4 (AE001813)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 341
           
 Score =  141 bits (351), Expect = 1e-32
 Identities = 90/330 (27%), Positives = 167/330 (50%), Gaps = 24/330 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFA----TLPEATKYLHSY--F 60
           ++LL++ +   ++    + I +++  + PG+   +   R A    T P+   Y  +   F
Sbjct: 26  KFLLKRLLTIAISMVVVIVITYVLMWLAPGNFFELQRVRDAIARVTTPDDPAYQATLKGF 85

Query: 61  VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
            + +GL+ PLW+Q + + K  +    G S     + + +++KE  P    L   +++ + 
Sbjct: 86  EERYGLNNPLWKQILMYLKGAVVFKFGPSFSDPARNIEDLIKEKFPITFTLALSSILFAL 145

Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
            VG  LG LA   KN  +D   M +     A P +  A+ L  +F+  LGW P SG    
Sbjct: 146 VVGVPLGILAALKKNTWIDYTAMTVSVIGVAIPSYVVAVFLILIFSIYLGWLPTSG---- 201

Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
                  WE I+  +    LP ++L +  L   A   R  ++  +  D+IR   + G  +
Sbjct: 202 -------WEGIRTKI----LPTIALALGPLASVARFTRVSLLDTLNQDFIRTAYAKGGDD 250

Query: 239 K-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
           + ++MKHA + +M+P VT +  Q+  L+ G V V+ +F  PG+G +     + +DY L+ 
Sbjct: 251 RTVIMKHALRPSMIPLVTIVGPQMAYLMVGTVWVENIFRIPGLGQLFANAAVTRDYPLLV 310

Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
            +  ++ LTV++ N ++D+LYAI+DPR+++
Sbjct: 311 TSTFILALTVMIMNLIVDVLYAILDPRIKL 340


>gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T45531 agaB
           protein [imported] - Agrobacterium tumefaciens plasmid
           pTi15955 >gi|2665707|gb|AAB88467.1| (AF242881) agaB
           [Agrobacterium tumefaciens]
           Length = 323
           
 Score =  139 bits (348), Expect = 3e-32
 Identities = 94/314 (29%), Positives = 164/314 (51%), Gaps = 17/314 (5%)

Query: 17  ILTFFFAVTIDFIIPRIMPGDPIAVLLSRFAT-LPEATKYLHSYFVQAFGLDKPLWEQYI 75
           ++  +   T+ F I  IMPGDP+ +LL   +   PEA   +        GLD+P+  QY+
Sbjct: 19  LVQLWVIATLVFSIMYIMPGDPVLLLLGPESNPSPEAVAAMR----HQLGLDQPVMSQYL 74

Query: 76  SFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KN 133
            +      GDLG S+      V E +  ++P  + L   A++ +  +G  +G  A   + 
Sbjct: 75  KWLGNAASGDLGNSVDGVS--VVEYITASIPKTMELATAAIILASIIGVPIGIAAALRRG 132

Query: 134 KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKDYL 193
           + LD+ L  +     + P +    LL  +F+ KLGW P SG     I  S+   F K   
Sbjct: 133 RFLDSLLTSLSTLGISLPVYILGSLLILMFSLKLGWLPSSGYTD--ISRSVFLHFQK--- 187

Query: 194 HHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLP 252
              TLP ++L +      A   R+ ++  +  D++R L + G+ E+ ++  H  +NA +P
Sbjct: 188 --LTLPAVTLGLGLAASIARMTRSSMLEILGRDFVRSLRARGMRERRVIWVHVLRNAAIP 245

Query: 253 QVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANF 312
            VT + LQLG L+ G V V+ ++++PG+  +L+  + N++Y L+QG+ L I    ++ N 
Sbjct: 246 IVTIIGLQLGNLMGGTVLVEALYNWPGLSTLLVTAVSNRNYPLVQGSILTIAALFILINL 305

Query: 313 VIDLLYAIIDPRVR 326
            +D+LY+++DPR+R
Sbjct: 306 CVDILYSLLDPRIR 319


>pir||S47696 nickel transport system permease protein nikB - Escherichia coli
           >gi|466613|gb|AAB18452.1| (U00039) nikB [Escherichia
           coli] >gi|1789888|gb|AAC76502.1| (AE000423) transport of
           nickel, membrane protein [Escherichia coli K12]
           Length = 314
           
 Score =  139 bits (347), Expect = 4e-32
 Identities = 103/324 (31%), Positives = 167/324 (50%), Gaps = 23/324 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           RY+LR+ ++ I     A  I F++ R+  GDP    L R + LP   + L S      GL
Sbjct: 3   RYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYL-RLSNLPPTPEMLASTRTM-LGL 60

Query: 67  DKPLWEQYISF-WKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
           D+PL+ QY ++ WKA LH D GIS +   +PV + +   LP  L L   ALV        
Sbjct: 61  DQPLYVQYGTWLWKA-LHLDFGIS-FASQRPVLDDMLNFLPATLELAGAALVLILLTSVP 118

Query: 126 LGALAGKNK-KLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPS 183
           LG  A +++ +L ++ +    FL  S P FW A LL   F+  L W P  G   YG    
Sbjct: 119 LGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG---YG---- 171

Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL-M 242
             W+       H  LP +S+  + L   A  +R  ++      ++ +    G+++K    
Sbjct: 172 -GWQ-------HIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTER 223

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
           +H  +NA LP +T + + +G L+ G + ++ +F++PG+G   +  I N+DY +IQ   L+
Sbjct: 224 RHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLM 283

Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
           +++  +V N ++DLL A +DPR+R
Sbjct: 284 MVVVFVVCNLIVDLLNAALDPRIR 307


>dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
           Length = 315
           
 Score =  139 bits (347), Expect = 4e-32
 Identities = 92/326 (28%), Positives = 161/326 (49%), Gaps = 25/326 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLS--RFATLPEATKYLHSYFVQAF 64
           R  +R+ +   L   F   + F+  R+ PGDP+  +L+    +   E  + L     +  
Sbjct: 3   RIFIRRLLEVALFVLFVTFVSFLFVRLAPGDPVLTILNVDELSVSQEEVETLR----EDM 58

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
           G +KPL  QY  +    +  D G+S Y   +PV +++ + LP  L L   +L+    V  
Sbjct: 59  GFNKPLLVQYGHWLLDFVRLDFGVS-YVTGQPVMDMIMKGLPATLELTVGSLIVMLIVSI 117

Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
            LG+LA   +N+ +D+    +     A P FW  ++   LF  +L W P  G        
Sbjct: 118 PLGSLAALYRNRWIDHLSRILAILGAAIPSFWLGLIFIDLFAVRLNWLPTMG-------- 169

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-IL 241
                  +D      LP ++L +     +   +R+ ++  +  ++IR   + G+SEK I 
Sbjct: 170 -------RDGFVSLILPSVTLGLAISSVYVRLLRSSLLDSLSQEFIRAARARGLSEKRIF 222

Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
           + HA ++++ P +T   + LG L+ G V ++V+F+YPGIG +++  I  +DY LIQG  L
Sbjct: 223 VAHALRHSLPPVITVFGVSLGSLIGGVVVIEVLFAYPGIGKLVVDAIRQRDYPLIQGYIL 282

Query: 302 VIILTVLVANFVIDLLYAIIDPRVRI 327
           V+ L V V N  +DL Y  ++P +++
Sbjct: 283 VMALIVFVINTSVDLSYRYLNPEMKL 308


>pir||B75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
           (strain R1) >gi|6459333|gb|AAF11132.1|AE002000_8
           (AE002000) peptide ABC transporter, permease protein
           [Deinococcus radiodurans]
           Length = 333
           
 Score =  139 bits (346), Expect = 6e-32
 Identities = 95/329 (28%), Positives = 170/329 (50%), Gaps = 13/329 (3%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y+LR+ + +I TF  A  + F I +  PGD ++ L    +  PE  + L     + FGLD
Sbjct: 10  YILRRVLQFIPTFVLATMLAFFITQAAPGDFLSQLKENPSVKPETIERLR----REFGLD 65

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           +P++ QY+ ++K +L GDLG S + Y +PVAE+++      L L+  + V  + V   +G
Sbjct: 66  QPVFVQYLYWFKNLLMGDLGDS-FQYKRPVAEVIQGPFLNSLILVVISTVLHFAVSIPVG 124

Query: 128 ALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTF---KLGW-FPISGAYSYGII 181
             +  K     + +   F ++    P F+F +L  Y       + GW  P+ G  S  + 
Sbjct: 125 VYSALKPYSFWDRVFTFFSYIGLGIPSFFFGLLAIYAMLQLKQQFGWDLPLGGKSSSALP 184

Query: 182 PSLS-WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK- 239
             +S    + D   H  +P + L +  + G +  +R  ++  +  DYIR   + G++++ 
Sbjct: 185 TDISPLRHVWDVFLHALIPSIILVLRGISGESRFIRGQMLEVLGQDYIRTARAKGLNDRA 244

Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
           +  KHAFK AM+P + GL   L  L+ G   +++VF++PG+  + +  + NQD +++   
Sbjct: 245 VTYKHAFKLAMIPTIAGLGGLLPALIGGAGFLEIVFNWPGLTPLQLTALGNQDIYILMAV 304

Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
             +  L  ++ N + DLL A +DPR+R S
Sbjct: 305 TALGTLLYMIGNLLSDLLLAAVDPRIRYS 333


>dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 305
           
 Score =  139 bits (346), Expect = 6e-32
 Identities = 93/318 (29%), Positives = 156/318 (48%), Gaps = 24/318 (7%)

Query: 12  KTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLW 71
           K +  ++   F ++        + G+P+A++L   A+  +  +   S      GLD+P  
Sbjct: 7   KRLAEMIPVLFIISFIVFALVFVAGNPVALMLPEDASQEDIDQLTAS-----LGLDQPFL 61

Query: 72  EQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG 131
            QY  +   ++ GD G S  Y    +  +L E LP  L L   ALV +  +   LG  + 
Sbjct: 62  VQYGKYLLNLVQGDFGESFRYNTSALPLVL-ERLPATLELAVAALVLAVAMAIPLGVWSA 120

Query: 132 --KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFI 189
             ++  +D          +A P FW  I+L  +F+  LGWFP+SG  + G          
Sbjct: 121 TKQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSGRGTLG---------- 170

Query: 190 KDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKN 248
                H  LP ++L           +R+ +I  +  DYIR   S G+ E  ++ KHAF+N
Sbjct: 171 -----HLVLPAMTLATGIAAEITRLLRSSMIEILNQDYIRTARSKGIREGMVVYKHAFRN 225

Query: 249 AMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVL 308
           +++P VT +ALQ   +V G +  + VFS+PG+G +L+Q +  +D  ++Q    VI + V+
Sbjct: 226 SLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQAVHTRDMAIVQACVFVIAILVI 285

Query: 309 VANFVIDLLYAIIDPRVR 326
             N V D+LY ++DPR++
Sbjct: 286 FMNLVADVLYRLLDPRIK 303


>pir||B75118 dipeptide abc transporter, permease protein (dppb) PAB1872 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458170|emb|CAB49659.1| (AJ248285) dipeptide ABC
           transporter, permease protein (dppB) [Pyrococcus abyssi]
           Length = 332
           
 Score =  138 bits (345), Expect = 8e-32
 Identities = 97/338 (28%), Positives = 166/338 (48%), Gaps = 20/338 (5%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
           M+ +K++L+R+ + +I T      I F+I   +P DP       +A   +ATK       
Sbjct: 1   MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA----WAGGEKATKEAIELIK 56

Query: 62  QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
           + + LD+P ++QY+   K ++     I       PV   + +  P    L   A      
Sbjct: 57  KMYHLDEPWYDQYVFLIKGLITNT--IIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILI 114

Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSY 178
           +G  LG ++   +N  +D  ++ IF  L  S P FW   L+ Y+F  K     I+G   +
Sbjct: 115 IGIPLGIISALKRNSWIDT-VVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPF 173

Query: 179 GI----IPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYI 228
                 IP +      ++E  K +L  + LP  +L  + +G  A  +RN  +  + +DY+
Sbjct: 174 PEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV 233

Query: 229 RYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
           ++L++ GV +  + +HA KNA++P VT L LQ G L+ G    + VF  PG+G   +Q I
Sbjct: 234 QFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293

Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
            N D+ ++     +  +  +  N ++D+LYA+IDPRVR
Sbjct: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331


>pir||B72617 probable dipeptide transport system permease protein APE1395 -
           Aeropyrum pernix (strain K1) >gi|5105078|dbj|BAA80392.1|
           (AP000061) 336aa long hypothetical dipeptide transport
           system permease protein [Aeropyrum pernix]
           Length = 336
           
 Score =  138 bits (344), Expect = 1e-31
 Identities = 93/337 (27%), Positives = 159/337 (46%), Gaps = 18/337 (5%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
           +S + R+L+R+ + +I T      + F+I  ++PG+P  +        PE  + +    V
Sbjct: 5   VSNLTRFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKASPEVVEQI----V 60

Query: 62  QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
           + + LD+P WEQY  F   +L   +   +      V +++ E LP  + L   A V    
Sbjct: 61  REYRLDRPFWEQYFFFMYKLLTNTMISPVT--SNYVWDMIVERLPVTIQLTLLAFVFIIL 118

Query: 122 VGNWLGALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA---- 175
           +G  LG ++   +   +D  +  +     + P FW A LL ++F  K     ++G     
Sbjct: 119 LGIPLGIISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPP 178

Query: 176 YSYGIIP------SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
           YS   IP       L     +D L  +T+P  +L    +G  A  +RN  +  +  DY+ 
Sbjct: 179 YSITGIPLIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVE 238

Query: 230 YLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIM 289
           ++++ G+      +H  +N+ +P VT L L  G L+ G    + +F  PG+G  L+  I 
Sbjct: 239 FMDARGLPSTWKYRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSIN 298

Query: 290 NQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           N DY  + G  L + +  L  N ++D+ YAIIDPRVR
Sbjct: 299 NYDYLSLMGGVLFVGIIYLTVNLLVDITYAIIDPRVR 335


>sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDR
           >gi|7449121|pir||A64902 peptide transport system
           permease protein b1486 - Escherichia coli
           >gi|1742426|dbj|BAA15141.1| (D90789) Dipeptide transport
           system permease protein DppB. [Escherichia coli]
           >gi|1742437|dbj|BAA15151.1| (D90790) Dipeptide transport
           system permease protein DppB. [Escherichia coli]
           >gi|1787761|gb|AAC74559.1| (AE000245) putative transport
           system permease protein [Escherichia coli K12]
           Length = 340
           
 Score =  137 bits (342), Expect = 2e-31
 Identities = 99/317 (31%), Positives = 159/317 (49%), Gaps = 23/317 (7%)

Query: 26  IDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYISFWKAVLHGD 85
           I FII  ++PGDP  +L         A+  +     Q  GLD+PL+ Q+  +   + HGD
Sbjct: 24  ITFIISHLIPGDPARLLAG-----DRASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGD 78

Query: 86  LGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPI 143
           LG SI    +PV E L+   P  L L F AL+ +  +G  LG L+   +N+ LD+ +  +
Sbjct: 79  LGTSIRT-GRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVWRNRWLDHLVRIM 137

Query: 144 FYFLQASPYFWFAILLSYLFTFKLGWFP--------------ISGAYSYGIIPSLSWEFI 189
                ++P FW  + +  LF   L   P              ++G Y    +   + E  
Sbjct: 138 AITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVF 197

Query: 190 KDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKN 248
            + L H  LP L+L  V LG  A  +R+ ++ ++  DYIR   + G+    I++ +A  N
Sbjct: 198 FNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPN 257

Query: 249 AMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVL 308
           A++P +T L L LG L+ G V  + VF++PG+G  ++  I   D+  + G  +V+    +
Sbjct: 258 ALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYV 317

Query: 309 VANFVIDLLYAIIDPRV 325
           + N V+DLLY  IDPR+
Sbjct: 318 LVNLVVDLLYLWIDPRI 334


>pir||C82242 oligopeptide ABC transporter, permease protein VC1092 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9655561|gb|AAF94251.1| (AE004190) oligopeptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 306
           
 Score =  136 bits (339), Expect = 4e-31
 Identities = 88/323 (27%), Positives = 158/323 (48%), Gaps = 23/323 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++ ++    I T    +TI F + R  PG+P +   S     PE    +++     +GL
Sbjct: 3   KFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINA----KYGL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKP+ EQY+++   ++ GD G S  Y    V E++  ALP  + +   A V +  +G  +
Sbjct: 56  DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G +A   +N  +D  +M         P F  A +L Y+F  +   FP  G    G     
Sbjct: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGF---- 171

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMK 243
                     +  LP L + ++ +  +A   R  +I  + +++IR   + G+S   I++K
Sbjct: 172 ---------EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVK 222

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA K A+LP V+ +      ++ G+V ++ +F  PGIG + +    N+DY L+ G  ++I
Sbjct: 223 HALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILI 282

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
               ++ N ++D+L A IDP++R
Sbjct: 283 GFLFILFNAIVDILLAYIDPKIR 305


>pir||C71841 probable peptide ABC transporter, ATP-binding protein -
           Helicobacter pylori (strain J99)
           >gi|4155769|gb|AAD06746.1| (AE001544) putative Peptide
           ABC transporter, ATP-binding protein [Helicobacter
           pylori J99]
           Length = 348
           
 Score =  134 bits (335), Expect = 1e-30
 Identities = 101/344 (29%), Positives = 171/344 (49%), Gaps = 30/344 (8%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPE-------------ATK 54
           Y+L++ ++ I T    +TI+F + +  PG PI  ++++                   A++
Sbjct: 4   YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63

Query: 55  YLHSYFVQ----AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLA 110
            L S  ++     +G DKP+ E+Y+   K  L  D G S Y   K V +++KE LP  ++
Sbjct: 64  GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIK-VIDLIKEKLPVSIS 122

Query: 111 LLFPALVASWFVGNWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFK-- 166
           L F + +  + +   LG    K  N+ LD     +     A P F FA++L   F     
Sbjct: 123 LGFFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNY 182

Query: 167 LGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWA---IGMRNMIIYEI 223
             WFP+ G  S       +   IKDYL H TLP L    + LGG+A   + ++N  + E+
Sbjct: 183 WHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLC---ISLGGFASLTLLVKNSFLDEM 239

Query: 224 EADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQ-LGLLVAGNVTVQVVFSYPGIG 281
              Y+   ++ G S  +I   H F+NA+L  V G     LG+  + ++ +++VFS  G+G
Sbjct: 240 GKLYVVSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLG 299

Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
            +  + I+++DY ++ G+  +  L  LVA+ + DLL  +IDPR+
Sbjct: 300 LLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343


>gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis]
           Length = 311
           
 Score =  134 bits (334), Expect = 1e-30
 Identities = 91/333 (27%), Positives = 169/333 (50%), Gaps = 29/333 (8%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +Y+ R+ +  I+T F  VT+ F + +  PG P +         PE    L++++    GL
Sbjct: 3   KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKPL+ QY+S+ K+V   D G S  Y  + V +++    P    L   A++ +  +G   
Sbjct: 56  DKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLF 115

Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIP 182
           G +A   + K  +Y + I      S P F  A +L Y+F+ KLG FP++G  +++Y  +P
Sbjct: 116 GVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLP 175

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKIL 241
           S++           ++P    F+ +L       R+ +I  + +DYIR  ++ G+S +++ 
Sbjct: 176 SIALA---------SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSAQRLQ 218

Query: 242 MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
               F+      +  L      ++ G+  ++ +F  PG+G   +  I N+DY +I G  +
Sbjct: 219 CGTPFETHFCRLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTV 278

Query: 302 VIILTVLVANFVIDLLYAIIDPRVRISYTEEGA 334
              + +L+   ++D+LY IIDPR+++S  ++GA
Sbjct: 279 FFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA 311


>pir||D71014 probable dipeptide transport system permease protein dppB -
           Pyrococcus horikoshii >gi|3257833|dbj|BAA30516.1|
           (AP000006) 332aa long hypothetical dipeptide transport
           system permease protein dppB [Pyrococcus horikoshii]
           Length = 332
           
 Score =  134 bits (334), Expect = 1e-30
 Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 20/338 (5%)

Query: 2   MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
           M+ +K++L+R+ + +I T      I F+I   +P DP       +A   +AT+       
Sbjct: 1   MANLKKFLIRRLLTFIPTIIGVTLIVFLIAYKIPADPAKA----WAGGEKATQQAIELIK 56

Query: 62  QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
           + + LD+P ++QY+   K ++     I       P+   + +  P  L L   A +    
Sbjct: 57  KMYHLDRPWYDQYVFLIKGLIANT--IIDPRTSNPIMYDVGKRFPVTLQLAIIAFIFILI 114

Query: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGA--- 175
           +G  LG ++   +N  +D  ++ IF  L  S P FW   L+ Y+F  K     I+G    
Sbjct: 115 IGIPLGIISALKRNTWVDT-VVRIFALLGVSTPAFWLGYLMIYIFFVKYKVTTIAGVPPM 173

Query: 176 -YSYGIIPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYI 228
                 +P +      +++  K +L  + LP  +L  + +G  A  +RN  +  + +DY+
Sbjct: 174 PKPITYVPMIDALLRGNFDLFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV 233

Query: 229 RYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
            +L++ GV +  + +HA KNA++P VT L LQ G L+ G    + VF  PG+G   +Q I
Sbjct: 234 LFLKAKGVPKMRVYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQSI 293

Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
            N D+ ++     +  +  +  N ++D+LYAIIDPRVR
Sbjct: 294 QNLDFPVVIAITFIYAIIYVTINLIVDVLYAIIDPRVR 331


>gb|AAC67218.1| (U78968) transmembrane transport protein DppB [Streptococcus
           pyogenes]
           Length = 325
           
 Score =  134 bits (334), Expect = 1e-30
 Identities = 90/318 (28%), Positives = 166/318 (51%), Gaps = 12/318 (3%)

Query: 14  MIYILTFFFAVTI-DFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWE 72
           +I  +T  F V++  F++ +  P DP+   ++   +L  A    +      +GLDKP   
Sbjct: 12  IIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQ---YKAIAHHYGLDKPALV 68

Query: 73  QYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK 132
           QY  + K V+ GDLG S+ Y  +PV++I++        L+  + + S  +G  LG L+  
Sbjct: 69  QYFIWLKNVIQGDLGTSLVYR-QPVSDIIRSRAGASFILMGLSWILSGLIGFILGTLSAF 127

Query: 133 NK-KLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEF-I 189
           ++ KL + ++  F +LQ S P FW  ++   +F+ +LGWFPI  +   G   +LS +  +
Sbjct: 128 HQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIG---TLSQDITL 184

Query: 190 KDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKN 248
            D + H  LP  +L ++ +    +  R  ++  + ++Y+ +  + G ++ +I   H  +N
Sbjct: 185 ADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHHCLRN 244

Query: 249 AMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVL 308
           A++P +T      G L  G+V  + VFSYPG+G  L +  +  D  L+    ++  L V 
Sbjct: 245 AIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVF 304

Query: 309 VANFVIDLLYAIIDPRVR 326
             N + D+L +II+P++R
Sbjct: 305 AGNLIADILNSIINPQLR 322


>sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
           >gi|1074012|pir||G64188 transmembrane protein dppB -
           Haemophilus influenzae (strain Rd KW20)
           >gi|972895|gb|AAA95972.1| (U17295) DppB [Haemophilus
           influenzae] >gi|1574114|gb|AAC22840.1| (U32798)
           dipeptide ABC transporter, permease protein (dppB)
           [Haemophilus influenzae Rd]
           Length = 333
           
 Score =  132 bits (330), Expect = 4e-30
 Identities = 98/345 (28%), Positives = 166/345 (47%), Gaps = 40/345 (11%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++ ++ ++ I TF     I F +   +PGDP+ +++       E    +H   +   GL
Sbjct: 3   KFVFKRILMVIPTFIAITLITFALVHFIPGDPVEIMMGERGLTAE----VHQQMMHQLGL 58

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           D PL++QY  +   V+ GD G S +   +PV        P    L F AL  S   G  L
Sbjct: 59  DLPLYQQYFHYIGNVIQGDFGAS-FRTQQPVLTEFFTLFPATAELAFFALFWSLLGGIIL 117

Query: 127 GALAGKNK-----------KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGW------ 169
           G +A   K            L  Y MPIF         W+ ++L    + +LG       
Sbjct: 118 GTIAAVKKDSWISHTVTAASLTGYSMPIF---------WWGLILILYVSPQLGLPQGGRL 168

Query: 170 ---FPISGAYSYGIIPS----LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYE 222
              F I     + +I S    +S  F ++ +    LP + L  V L       R+ ++  
Sbjct: 169 DNEFWIDTPTGFMLIDSWLSGVSGAF-ENAVKSLILPAIVLGTVPLAIITRMTRSAMLEV 227

Query: 223 IEADYIRYLESLGVS-EKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIG 281
           +  DYIR  ++ G+S  +I++ HA +NA++P VT + L +  L++G V  + +FS+PGIG
Sbjct: 228 LGEDYIRTAKAKGLSYTRIVIVHALRNALIPVVTVVGLIVAQLLSGAVLTETIFSWPGIG 287

Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
             ++  I  +DY ++QG+ L+I   ++V N  +DLLY +++PR+R
Sbjct: 288 KWIIDAIQARDYPVLQGSVLIIATIIIVVNLTVDLLYGVVNPRIR 332


>sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TP
           >gi|2182646|gb|AAB91869.1| (AE000098) Y4tP [Rhizobium
           sp. NGR234]
           Length = 313
           
 Score =  132 bits (330), Expect = 4e-30
 Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 20/324 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y+LR+ +  I          F++ R+ PGDP AV+       P AT+ + +   +  GL+
Sbjct: 4   YILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAG-----PTATEQMVANIREELGLN 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           +PL  Q++ +   VL G+ G S++    PV ++L + L   ++L    ++ S  VG   G
Sbjct: 59  EPLPVQFVHWASDVLRGNFGASVFT-GVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFG 117

Query: 128 ALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISG--AYSYGIIPS 183
            LA       +D  L        + P F    +L Y F  +  W P+ G  + + G+ P 
Sbjct: 118 VLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAP- 176

Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILM 242
                   +  H  LP ++L +  +   A   R  ++  +  DY+R   + G S   +L 
Sbjct: 177 --------WFLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLF 228

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
            HA KNA +P +T + +    ++ G V  + VF+ PGIG +++  I N+DY +IQ   ++
Sbjct: 229 HHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVL 288

Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
           I    ++ N ++DL Y +IDPR+R
Sbjct: 289 ISGLYVLINLLVDLAYTLIDPRIR 312


>pir||C64676 oligopeptide ABC transporter, permease protein - Helicobacter
           pylori (strain 26695) >gi|2314415|gb|AAD08295.1|
           (AE000630) oligopeptide ABC transporter, permease
           protein (oppB) [Helicobacter pylori 26695]
           Length = 348
           
 Score =  132 bits (330), Expect = 4e-30
 Identities = 100/344 (29%), Positives = 170/344 (49%), Gaps = 30/344 (8%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPE-------------ATK 54
           Y+L++ ++ I T    +TI+F + +  PG PI  ++++                   A++
Sbjct: 4   YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63

Query: 55  YLHSYFVQ----AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLA 110
            L S  ++     +G DKP+ E+Y+   K  L  D G S Y   K V +++KE LP  ++
Sbjct: 64  GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIK-VIDLIKEKLPVSIS 122

Query: 111 LLFPALVASWFVGNWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFK-- 166
           L   + +  + +   LG    K  N+ LD     +     A P F FA++L   F     
Sbjct: 123 LGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNY 182

Query: 167 LGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWA---IGMRNMIIYEI 223
             WFP+ G  S       +   IKDYL H TLP L    + LGG+A   + ++N  + E+
Sbjct: 183 WHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLC---ISLGGFASLTLLVKNSFLDEM 239

Query: 224 EADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQ-LGLLVAGNVTVQVVFSYPGIG 281
              Y+   ++ G S  +I   H F+NA+L  V G     LG+  + ++ +++VFS  G+G
Sbjct: 240 GKLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLG 299

Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
            +  + I+++DY ++ G+  +  L  LVA+ + DLL  +IDPR+
Sbjct: 300 LLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343


>sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|1075747|pir||C53290 oligopeptide transport protein
           oppB - Lactococcus lactis subsp. lactis
           >gi|308852|gb|AAA16165.1| (L18760) transmembrane protein
           [Lactococcus lactis]
           Length = 319
           
 Score =  131 bits (327), Expect = 1e-29
 Identities = 93/327 (28%), Positives = 158/327 (47%), Gaps = 17/327 (5%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           + ++R+ ++ I   F    + F   ++MPGDP + L+    T P   + L     +A GL
Sbjct: 3   KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPH-TDPHEVEALR----RAAGL 57

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEIL--KEALPYDLALLFPALVASWFVGN 124
             P WEQY+ +    +HG+LG+S Y   +PV  ++  +    + ++LL   L   + +  
Sbjct: 58  YDPWWEQYLRWLGNAIHGNLGMS-YNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPM 116

Query: 125 WLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS---YGII 181
            + A   + K  D   +         P + F +L+ ++F + L WFP  G  S    GII
Sbjct: 117 SIVAARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGII 176

Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL 241
           P     F K Y  H  LP  SL +    G     R+ I+ E   DY+R   + GV EK++
Sbjct: 177 PVF---FSKIY--HMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVI 231

Query: 242 MK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
            + H  +NA LP  +     +  L+ G +  + +F YPG+G + +  I  +DY +I    
Sbjct: 232 FRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALI 291

Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
           L+   + L+   + D++ A++DPR+RI
Sbjct: 292 LLNGFSGLLGALLPDIIMAMVDPRIRI 318


>sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|495179|gb|AAB00535.1| (U09553) transmembrane protein
           [Lactococcus lactis]
           Length = 319
           
 Score =  131 bits (326), Expect = 1e-29
 Identities = 93/327 (28%), Positives = 157/327 (47%), Gaps = 17/327 (5%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           + ++R+ ++ I   F    + F   ++MPGDP + L+    T P   + L     +A GL
Sbjct: 3   KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPH-TDPHEVEALR----RAAGL 57

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEIL--KEALPYDLALLFPALVASWFVGN 124
             P WEQY+ +    +HG+LG+S Y   +PV  ++  +    + ++LL   L   + +  
Sbjct: 58  YDPWWEQYLRWLGNAIHGNLGMS-YNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPM 116

Query: 125 WLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS---YGII 181
            + A   + K  D   +         P + F +L+ ++F + L WFP  G  S    GII
Sbjct: 117 SIVAARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLNWFPTGGTVSPDAMGII 176

Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKIL 241
           P     F K Y  H  LP  SL +    G     R+ I+ E   DY+R   + GV EK++
Sbjct: 177 PVF---FSKIY--HMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVI 231

Query: 242 MK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
            + H  +NA LP  +     +  L+ G +  + +F YPG+G + +  I  +DY +I    
Sbjct: 232 FRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALI 291

Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
           L+     L+   + D++ A++DPR+RI
Sbjct: 292 LLNGFLGLLGALLSDIIMAMVDPRIRI 318


>gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [Listeria monocytogenes]
           Length = 309
           
 Score =  131 bits (325), Expect = 2e-29
 Identities = 88/325 (27%), Positives = 157/325 (48%), Gaps = 25/325 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +Y L++ +  ++T F   ++ F++ + +PG P          L +   ++ +   + +GL
Sbjct: 3   KYTLKRVLYMLITLFIIASVTFVLMKFLPGTPYR----NQEKLSDEQIHMTN---EKYGL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           +  +  QY ++   ++ GDLG+S     +PV+EIL   +   + L   A+      G  L
Sbjct: 56  NDSIPVQYFNYMTGLVKGDLGVSFQLDNRPVSEILSALIGPSVQLALEAMAFGVIFGILL 115

Query: 127 GALAGK-NKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G +A     +  +Y       L  S P F FA +L Y    KL  FP++G          
Sbjct: 116 GVIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAG---------- 165

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
            W    D +    LP  +L M  L   A  MR  +I    +DY+   ++ G S  ++ +K
Sbjct: 166 -WGTFADTI----LPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKGNSRTEVAVK 220

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA +NA++P +T L      L+ G++ ++ ++S PGIG   +  I   DY +I G  ++ 
Sbjct: 221 HAIRNALIPLITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYPVIMGTTILF 280

Query: 304 ILTVLVANFVIDLLYAIIDPRVRIS 328
            + ++    V+D+LY +IDPR+R+S
Sbjct: 281 AVMLVFVILVVDILYGLIDPRIRVS 305


>pir||B82356 peptide ABC transporter, permease protein VC0172 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9654575|gb|AAF93348.1| (AE004107) peptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 342
           
 Score =  130 bits (324), Expect = 2e-29
 Identities = 95/334 (28%), Positives = 165/334 (48%), Gaps = 21/334 (6%)

Query: 4   GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA 63
           G+  +L+++    ++  F    + F I   + GDP+  L+ +  +  E            
Sbjct: 17  GMFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAE-----RQALRDE 70

Query: 64  FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
            GL+ P   +Y  F  A + GDLG S Y++ +P  E++ + L   L L+F A +      
Sbjct: 71  LGLNDPFIIKYSRFVTAAVQGDLGTS-YFFKRPALEVIFDKLVATLELVFGATLIIIVFS 129

Query: 124 NWLGALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYG-- 179
             LG  +  + K      +M       + P F  AI+L Y+F+ +LGW P     SYG  
Sbjct: 130 IPLGVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWXP-----SYGRG 184

Query: 180 -IIPSLSWE---FIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLG 235
             +  L WE   F  D L H  LP ++L  + L  +   +R+ ++  + ++YI++ ++ G
Sbjct: 185 ETVNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKG 244

Query: 236 VS-EKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYF 294
           +   KI  +HA KN MLP +T   +Q+G +VA  +  + VF +PG G++ ++ I   D  
Sbjct: 245 LPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTP 304

Query: 295 LIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
           LI    + + L  +V N ++DLLY +I+P V ++
Sbjct: 305 LITAYVIFVGLIFVVTNTIVDLLYGLINPTVNLT 338


>gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis]
           Length = 300
           
 Score =  129 bits (322), Expect = 4e-29
 Identities = 89/323 (27%), Positives = 163/323 (49%), Gaps = 29/323 (8%)

Query: 17  ILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYIS 76
           I+T F  VT+ F + +  PG P +         PE    L++++    GLDKPL+ QY+S
Sbjct: 2   IITLFVIVTVTFFLMQAAPGGPFS---GEKKLPPEIEANLNAHY----GLDKPLFVQYVS 54

Query: 77  FWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK-NKK 135
           + K+V   D G S  Y  + V +++    P    L   A++ +  +G   G +A   + K
Sbjct: 55  YLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNK 114

Query: 136 LDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIPSLSWEFIKDY 192
             +Y + I      S P F  A +L Y+F+ KLG FP++G  +++Y  +PS++       
Sbjct: 115 WQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSWAYTFLPSIALA----- 169

Query: 193 LHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMKHAFKNAML 251
               ++P    F+ +L       R+ +I  + +DYIR  ++ G+S +++     F+    
Sbjct: 170 ----SMPMA--FIARLS------RSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFC 217

Query: 252 PQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVAN 311
             +  L      ++ G+  ++ +F  PG+G   +  I N+DY +I G  +   + +L+  
Sbjct: 218 RLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCV 277

Query: 312 FVIDLLYAIIDPRVRISYTEEGA 334
            ++D+LY IIDPR+++S  ++GA
Sbjct: 278 LIVDVLYGIIDPRIKLSKAKKGA 300


>pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC 6803)
           >gi|1001545|dbj|BAA10172.1| (D64000) oligopeptide
           transport system permease protein [Synechocystis sp.]
           Length = 337
           
 Score =  129 bits (320), Expect = 6e-29
 Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 17/329 (5%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y++++ +  ++T   A  + F I ++ PG  +  L       PE  + L    VQ FGLD
Sbjct: 15  YVVQRLIEGLITLLLASLLSFAIVQLAPGSYLDTLQQNPKISPETLQQLK---VQ-FGLD 70

Query: 68  KPLWEQYISFWK----AVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
           +P W  Y+ +W+     V   + G S + Y + VA +L E +P  L L   +++ +W + 
Sbjct: 71  QP-W--YVQYWRWLTQVVTRFNFGES-FVYNRSVASLLIERIPATLLLAITSIILTWAIA 126

Query: 124 NWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
             LG +    +N  +D  L  I Y  Q  P F  A+LL +L        P+    S    
Sbjct: 127 IPLGIVGAVQQNTFIDRSLRVISYIGQGFPSFITALLLLFLAQSVSPLLPVGDMTSIDFA 186

Query: 182 PSLSWEF-IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
              SW   + D   H  LP L+L +    G    MR  ++  +  DYI+   + G+ E +
Sbjct: 187 -EFSWPHKVWDVAWHMILPTLALSITSFAGLQRLMRGQLLDVLRQDYIQTARAKGLPENR 245

Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
           ++  HA +NA+ P +T L  +   L++G    +  F++PG+G +++Q +  QD +L+ G+
Sbjct: 246 VIYVHALRNAINPLITILGFEFASLLSGAFIAEFFFNWPGLGRLILQAVTAQDLYLVMGS 305

Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
            ++    ++V N + DLL    DPR++++
Sbjct: 306 LMMGATLLIVGNLLADLLLKFTDPRIQLA 334


>sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|72438|pir||QREBOB oligopeptide transport system
           permease protein oppB - Salmonella typhimurium
           >gi|47803|emb|CAA29040.1| (X05491) Opp B (AA1-306)
           [Salmonella typhimurium]
           Length = 306
           
 Score =  128 bits (318), Expect = 1e-28
 Identities = 83/323 (25%), Positives = 156/323 (47%), Gaps = 23/323 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++LR+ +  I T F  +TI F + R+ PG P        A  PE    + +     + L
Sbjct: 3   KFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERALPPEVLANIEA----KYHL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           + P+  QY S+ K + HGD G S  Y    V +++  + P    L   A + +  +G   
Sbjct: 56  NDPIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSA 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G +A   +N + D  +M         P F  A LL  +F   L W P  G ++ G +  +
Sbjct: 116 GVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLP-GGGWNGGALKFM 174

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
                        LP ++L +  +   A   R  +I  + +++IR   + G+   +I+ +
Sbjct: 175 ------------ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFR 222

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA K A+LP ++ +      ++ G++ ++ ++  PGIG + + G +N+DY L+    +++
Sbjct: 223 HALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILV 282

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
               ++ N ++D+LYA+IDP++R
Sbjct: 283 GALTILFNAIVDVLYAVIDPKIR 305


>sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|7442404|pir||B36263 oligopeptide transport system
           permease protein oppB - Escherichia coli
           >gi|1787497|gb|AAC74326.1| (AE000223) oligopeptide
           transport permease protein [Escherichia coli K12]
           Length = 306
           
 Score =  127 bits (317), Expect = 1e-28
 Identities = 83/323 (25%), Positives = 156/323 (47%), Gaps = 23/323 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++LR+ +  I T F  +TI F + R+ PG P           PE    + +     + L
Sbjct: 3   KFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERTLPPEVMANIEA----KYHL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           + P+  QY S+ K + HGD G S  Y    V +++  + P    L   A   +  +G   
Sbjct: 56  NDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSA 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G +A   +N K D  +M +       P F  A LL  +F   L W P  G ++ G +  +
Sbjct: 116 GVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLP-GGGWNGGALKFM 174

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
                        LP ++L +  +   A   R  +I  + +++IR   + G+   +I+++
Sbjct: 175 ------------ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILR 222

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA K A+LP ++ +      ++ G++ ++ ++  PGIG + + G +N+DY L+    +++
Sbjct: 223 HALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILV 282

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
               ++ N ++D+LYA+IDP++R
Sbjct: 283 GALTILFNAIVDVLYAVIDPKIR 305


>pir||B70789 probable peptidetransport system permease - Mycobacterium
           tuberculosis (strain H37RV) >gi|2960089|emb|CAA17987.1|
           (AL022121) dppB [Mycobacterium tuberculosis]
           Length = 308
           
 Score =  126 bits (314), Expect = 3e-28
 Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y+ R+  + +  F  A  + + +  ++PGDP+A L       P     L S++     LD
Sbjct: 4   YVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDRPLTPAVAAQLRSHY----HLD 59

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
            P   QY+ +   +LHGDLG +  Y   PV+ +L  A P  + L   AL     +G   G
Sbjct: 60  DPFLVQYLRYLGGILHGDLGRA--YSGLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFG 117

Query: 128 ALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
            +AG  +    D+ ++     + A P F    L  +LF  +L   P++      +   L 
Sbjct: 118 VIAGLRQGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIAPVTVGERASVGRLL- 176

Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKH 244
                       LP + L  +         R+ +     ADY+R   + G+S  +++  H
Sbjct: 177 ------------LPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRVVTVH 224

Query: 245 AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVII 304
             +N+++P VT L   LG L+ G +  + +F+  G+G VL Q +  Q+   +     V++
Sbjct: 225 ILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIVTVLV 284

Query: 305 LTVLVANFVIDLLYAIIDPRVR 326
           L  L+ N ++DLLYA +DPR+R
Sbjct: 285 LIYLITNLLVDLLYAALDPRIR 306


>pir||C70141 oligopeptide ABC transporter, permease protein (oppB-1) homolog -
           Lyme disease spirochete >gi|2281460|gb|AAC46285.1|
           (AF000366) oligopeptide permease homolog B [Borrelia
           burgdorferi] >gi|2688245|gb|AAC66724.1| (AE001140)
           oligopeptide ABC transporter, permease protein (oppB-1)
           [Borrelia burgdorferi]
           Length = 306
           
 Score =  126 bits (313), Expect = 4e-28
 Identities = 86/322 (26%), Positives = 156/322 (47%), Gaps = 21/322 (6%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           ++ L+K +  I T    + + F + R+ PG P       F +       + +  ++ + L
Sbjct: 3   KFTLKKILGIIPTLLVIIFLCFFVMRMAPGSP-------FDSEKPIDPQVKARLMEKYHL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           DKP + Q   +    L GDLG S+      V++ +K   P  L L   +L+ S  +G  +
Sbjct: 56  DKPFYIQAFYYITNALRGDLGPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPI 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G LA   KN  +D  +  I     + P F    +L Y F  K G    SG          
Sbjct: 116 GILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSG---------- 165

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
            W   +    +  LP ++L M  +  +A  +R  ++  I++D+IR   + G+S +KI++K
Sbjct: 166 -WITERGGFSNLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIK 224

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           H  + AMLP V+ +      +++G+V ++ +F   G+G  + +  +N+DY ++ G  LV 
Sbjct: 225 HMLRGAMLPVVSYIGPAFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVY 284

Query: 304 ILTVLVANFVIDLLYAIIDPRV 325
            + +L++  + D++Y I+DPRV
Sbjct: 285 SIILLISILISDIIYKILDPRV 306


>pir||A75027 oligopeptide transport permease protein appb PAB1194 - Pyrococcus
           abyssi (strain Orsay) >gi|5459169|emb|CAB50655.1|
           (AJ248288) OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN APPB
           [Pyrococcus abyssi]
           Length = 353
           
 Score =  126 bits (313), Expect = 4e-28
 Identities = 86/288 (29%), Positives = 140/288 (47%), Gaps = 7/288 (2%)

Query: 49  LPEATKYLHSYFVQAFGLDKPLWEQYISFWKAVLHGDLGI--SIYYYPKPVAEILKEALP 106
           L E  K  +   ++A+GLD+P W + I   K  +  D G   S  +    V +I+  A+P
Sbjct: 66  LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125

Query: 107 YDLALLFPALVASWFVGNWLGALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFT 164
             + L   A +   F+G  LG  A  K   L +  + +F  +  S P +WF ++L  LF+
Sbjct: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185

Query: 165 FKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
           FKL   P  G  S  I P   + +  D L H  LP  ++  V  GGWA   RN++I  ++
Sbjct: 186 FKLNLLPSGGMTS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQ 243

Query: 225 ADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYV 283
            D+I    + GV E K++  HA + A  P +T     L   + G +  + VF++PG+G +
Sbjct: 244 EDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRL 303

Query: 284 LMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTE 331
               I   +  LI G+  + +   L+   + DL Y  +DPRV++  ++
Sbjct: 304 YWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQ 351


>dbj|BAA14776.1| (D90763) Oligopeptide transport system permease protein OppB.
           [Escherichia coli] >gi|1805525|dbj|BAA16039.1| (D90852)
           Oligopeptide transport system permease protein OppB.
           [Escherichia coli]
           Length = 306
           
 Score =  125 bits (310), Expect = 1e-27
 Identities = 82/323 (25%), Positives = 155/323 (47%), Gaps = 23/323 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +++LR+ +  I T F  +TI F + R+ PG P           PE    + +     + L
Sbjct: 3   KFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERTLPPEVMANIEA----KYHL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           + P+  QY S+ K + HGD   S  Y    V +++  + P    L   A   +  +G   
Sbjct: 56  NDPIMTQYFSYLKQLAHGDFDPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSA 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G +A   +N K D  +M +       P F  A LL  +F   L W P  G ++ G +  +
Sbjct: 116 GVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLP-GGGWNGGALKFM 174

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMK 243
                        LP ++L +  +   A   R  +I  + +++IR   + G+   +I+++
Sbjct: 175 ------------ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILR 222

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA K A+LP ++ +      ++ G++ ++ ++  PGIG + + G +N+DY L+    +++
Sbjct: 223 HALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILV 282

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
               ++ N ++D+LYA+IDP++R
Sbjct: 283 GALTILFNAIVDVLYAVIDPKIR 305


>gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola]
           Length = 341
           
 Score =  124 bits (308), Expect = 2e-27
 Identities = 92/327 (28%), Positives = 155/327 (47%), Gaps = 17/327 (5%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFAT---LPEATKYLHSYFVQA 63
           RY+ ++ +  I          FI+  +MPGDPI  +L    T    PE          + 
Sbjct: 21  RYIFKRLVSIIPVLIIMSVAIFILINLMPGDPILAMLDPEKTKAMTPEERALYIENMRKF 80

Query: 64  FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
            G DK   E+Y  +      G+ G SI Y  KPV E +   +     +     + ++ + 
Sbjct: 81  LGYDKGPVERYFLWMGDTFRGEFGYSIKYN-KPVNEFIGTYIKRSFRINIWGFLLAFLIS 139

Query: 124 NWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS-YGI 180
             +G  A   KN   D  +  +     + P F+ A+LL  +F   +   P SG     GI
Sbjct: 140 IPVGITAAVKKNSFFDKTVTVLTIVGISLPSFFLALLLIMVFVIFMQILPFSGMSDPRGI 199

Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKI 240
           +P   W +I        LP   + +  L G    +R+ +I  +++DYIR   + G+SEK+
Sbjct: 200 LPD--WHYI-------ILPVTVVVLTSLVGLIRYVRSAMIEILKSDYIRTARAKGLSEKV 250

Query: 241 LM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
           ++ +HAF+NA++P VT + L +  L  G++ V+ +F+YPG+G ++      +D  ++Q  
Sbjct: 251 VIYRHAFQNALIPVVTLIGLYIPGLFGGSIVVEKIFAYPGMGLLMNYAYGFKDRAVLQTV 310

Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVR 326
            L   L  L+ N  ID+ Y ++DPR+R
Sbjct: 311 LLFFGLLTLLGNIFIDVGYMVVDPRIR 337


>dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 314
           
 Score =  123 bits (305), Expect = 4e-27
 Identities = 88/322 (27%), Positives = 160/322 (49%), Gaps = 18/322 (5%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           +++R+ +  I        I F +  ++PGDP  ++    A  P+ T        +  GL+
Sbjct: 4   FIIRRLLQTIPVLIGVSIIVFSLLHLVPGDPAIMIAGESA--PQQTV---ENIRERLGLN 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
            P+  QY ++   V+ GDLG S +   +PVA+ + +     L L   +++ S F+G   G
Sbjct: 59  DPVPVQYFNYVSGVIQGDLGTS-FRSGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAG 117

Query: 128 ALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLG-WFPISGAYSYGIIPSL 184
            ++   +    D  LM I  F  + P FW  ++L   F      W P   A+     PS 
Sbjct: 118 IVSATKRYSFADTSLMIIALFGLSMPNFWLGLMLIQWFAIGYTPWLPFDTAW---FAPS- 173

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM-K 243
            W   +  +    LP ++L        A   R+ ++  +  DYIR   + GV E++++ +
Sbjct: 174 GWGSFRQIV----LPVITLGTAGAAIVARMTRSSMLEVLHQDYIRTARAKGVKERVVVYR 229

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA KNA++P VT + +Q G L+ G+V  + VF+  G+G ++++ I  +D+ ++QGA LVI
Sbjct: 230 HALKNALIPVVTVVGIQFGFLLGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQGAVLVI 289

Query: 304 ILTVLVANFVIDLLYAIIDPRV 325
            +  +  N ++D+ Y  ++ R+
Sbjct: 290 SVLFVFVNLLVDITYRFLNKRI 311


>sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJB
           >gi|7442459|pir||A64987 hypothetical 40.4 kD protein in
           bcr 5' region - Escherichia coli (strain K-12)
           >gi|1736843|dbj|BAA15986.1| (D90849) Oligopeptide
           transport system permease protein OppB. [Escherichia
           coli] >gi|1788504|gb|AAC75239.1| (AE000307) putative
           transport system permease protein [Escherichia coli K12]
           Length = 364
           
 Score =  122 bits (304), Expect = 5e-27
 Identities = 100/360 (27%), Positives = 161/360 (43%), Gaps = 46/360 (12%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPI-----AVLLSRFATLP----EATKYLHS 58
           YL+R+ ++ I T +  +TI+F I +I PG P+     A+       LP    E  +  H+
Sbjct: 4   YLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHA 63

Query: 59  Y------------------------FVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYP 94
                                        +G DKP+ E+Y       +  D G S++   
Sbjct: 64  QTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSA 123

Query: 95  KPVAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPY 152
             V  ++K++LP  + L   + +  + V   LG         + D +         A P 
Sbjct: 124 S-VLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPA 182

Query: 153 FWFAILLSYLFT----FKLGWFPISGAYSYGIIPSLSW-EFIKDYLHHWTLPFLSLFMVQ 207
           F FAILL   F     F L  FP+ G  S     SL W + I DYL H TLP L+  +  
Sbjct: 183 FLFAILLIVFFAGGSYFDL--FPLRGLVSANF-DSLPWYQKITDYLWHITLPVLATVIGG 239

Query: 208 LGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGL-ALQLGLLV 265
                +  +N  + E+   Y+    + GVSEK IL KH F+NAML  + G  A  + +  
Sbjct: 240 FAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFF 299

Query: 266 AGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
            G++ ++V+FS  G+G +  +  +++DY ++ G   +  L  L+ N V D+ Y ++DPR+
Sbjct: 300 TGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359


>gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; DppB2 [Halobacterium
           sp. NRC-1]
           Length = 347
           
 Score =  122 bits (303), Expect = 6e-27
 Identities = 93/348 (26%), Positives = 152/348 (42%), Gaps = 32/348 (9%)

Query: 6   KRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
           KR++L++ ++ +   F   T  F+I  +  GDP  V+L + A   +  +       Q  G
Sbjct: 4   KRFILKRLLLLVPVLFGVATFVFVILHLASGDPARVILGQRAPQQQVIQLR-----QELG 58

Query: 66  LDKPLWEQYISFWKAVLHGDLGISIYYYP-KPVAEILKEALPYDLALLFPALVASWFVGN 124
           L+ P++ QY  F       D G S        V  +L + +P  L L          +G 
Sbjct: 59  LNDPVYVQYARFLVDAAQFDFGQSYSVAQGTAVRSVLADKIPVTLELALYGQAIGILLGI 118

Query: 125 WLGALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
            LG ++  +   L ++   I      S P +W   LL   F+  LG FP SG     I  
Sbjct: 119 PLGVISAVEQDTLTDHFGRIGALSGISVPIYWSGPLLILAFSTFLGVFPASGRIESTIFL 178

Query: 183 SLSWEFIKDYLH-----------------------HWTLPFLSLFMVQLGGWAIGMRNMI 219
           + SW      L                        H  LP  ++ +  +   +  MR+ +
Sbjct: 179 ADSWSLFGVTLPLTGMLTVDTLLLGNVSAWVSAVMHLILPAATIGIYSMALISRMMRSSM 238

Query: 220 IYEIEADYIRYLESLGVSEKI-LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYP 278
           +  +  DY+R   + G   KI +MKH F+NA++P +T + +Q G L+ G V  + VF   
Sbjct: 239 LEVVRQDYMRTARAKGQGSKITIMKHGFRNALVPVITVIGIQFGSLLGGAVLTETVFGIE 298

Query: 279 GIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           GIG +L+  I   DY L+QG  L   L   + N ++D+ Y+ +DPR++
Sbjct: 299 GIGTILVSAINANDYPLVQGTVLTFALLFTLVNLLVDVTYSYLDPRIQ 346


>sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
           >gi|98272|pir||S16648 dipeptide transport system
           permease protein dppB - Bacillus subtilis
           >gi|580850|emb|CAA40003.1| (X56678) dciAB [Bacillus
           subtilis] >gi|2632014|emb|CAA05573.1| (AJ002571) DppB
           [Bacillus subtilis] >gi|2633647|emb|CAB13150.1| (Z99110)
           dipeptide ABC transporter (permease) [Bacillus subtilis]
           Length = 308
           
 Score =  122 bits (303), Expect = 6e-27
 Identities = 87/324 (26%), Positives = 156/324 (47%), Gaps = 25/324 (7%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           RY++++      T     T+ F++ +++PG P         T     K L +Y+     L
Sbjct: 3   RYMIKRFWAMAATILVITTLTFVLMKVIPGSPFN---EERGTNEAVQKNLEAYY----HL 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           D PL  QYI + K+++  D G SI      V ++L+   P    L   A+V +   G  L
Sbjct: 56  DDPLIFQYIFYLKSIITFDFGPSIKKPSDSVNDMLERGFPVSFELGMTAIVIAVISGLVL 115

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSL 184
           G +A   +N  LD   M +     + P F  A LL   F   L  FP +  ++  I    
Sbjct: 116 GVIAALRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKLFP-AATWTSPI---- 170

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
                     H  LP  +L +  +   A   R+ ++  +  DYIR  ++ G+S  KI++K
Sbjct: 171 ----------HMVLPTAALAVGPMAIIARLTRSSMVEVLTQDYIRTAKAKGLSPFKIIVK 220

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           HA +NA++P +T L   +  ++ G+  ++ +F+ PG+G   ++ I  +DY +I G  +  
Sbjct: 221 HALRNALMPVITVLGTLVASILTGSFVIEKIFAIPGMGKYFVESINQRDYPVIMGTTVFY 280

Query: 304 ILTVLVANFVIDLLYAIIDPRVRI 327
            + +++  F++DL Y ++DPR+++
Sbjct: 281 SVILIIMLFLVDLAYGLLDPRIKL 304


>pir||E72300 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981607|gb|AAD36141.1|AE001766_7 (AE001766)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 327
           
 Score =  121 bits (301), Expect = 1e-26
 Identities = 87/327 (26%), Positives = 162/327 (48%), Gaps = 13/327 (3%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA---- 63
           Y+LR+ +   +T +    I F+I ++ PGD    L S  A L  + + +    ++A    
Sbjct: 4   YILRRLITAFITLWIISIISFVIIQLPPGD---FLTSYIAQLKVSGEDVDIATIEALKKQ 60

Query: 64  FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
           +GLDKP++ QY+ +   +LHGD G S + + KPV E+L   L   + +   +L+ SW  G
Sbjct: 61  YGLDKPIYVQYLKWLWGILHGDFGYS-FSWKKPVNELLWNRLGVTVLVATLSLIFSWIFG 119

Query: 124 NWLGALAGKNK-KLDNYLMPIF-YFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
             +G  +  +   + +YL  I  Y   A P F  A++L +   + L    +SG +S   +
Sbjct: 120 FIIGMYSAVHPYSIGDYLATILGYIGLAVPNFLLALILMWGI-YSLTGINLSGLHSVKYL 178

Query: 182 PS-LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
            + ++ +   D L+H  +P L L    + G    +R  ++ E+   Y+    S G+ E K
Sbjct: 179 NTPMTIDKFLDILNHLWIPVLVLGTSGMAGLIRTLRANLLDELHKPYVEAALSKGLPENK 238

Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
           +  K+  + AM+P ++ +   L  + +G     +V + P +G +L+  + NQD +L    
Sbjct: 239 VFWKYPLRIAMIPFISTVGWSLPWIFSGATITAIVLNLPSVGPLLLNALKNQDMYLAGSL 298

Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVR 326
            + +    ++   + D+L A +DPR+R
Sbjct: 299 VMFLSFFTVIGTLISDILLAWVDPRIR 325


>pir||F83419 probable permease of ABC transporter PA1809 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9947793|gb|AAG05198.1|AE004607_4 (AE004607) probable
           permease of ABC transporter [Pseudomonas aeruginosa]
           Length = 360
           
 Score =  120 bits (299), Expect = 2e-26
 Identities = 92/352 (26%), Positives = 155/352 (43%), Gaps = 35/352 (9%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEAT-------------- 53
           Y+LR+ ++ + T F  + I+FII +  PG P+  ++++      A+              
Sbjct: 4   YILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGEV 63

Query: 54  --------------KYLHSYFVQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAE 99
                           L     + +G DK   E+++   K  LH D G S +   K V +
Sbjct: 64  AVAGSQYRGAQGLDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAK-VTD 122

Query: 100 ILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAI 157
           ++ E LP  ++L   + +  + V   LG           D +         A P F FAI
Sbjct: 123 LIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAI 182

Query: 158 LLSYLFT--FKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGM 215
           LL  LF       WFP+ G  S           + DY  H  LP  +L +       +  
Sbjct: 183 LLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNFATITLLT 242

Query: 216 RNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGL-ALQLGLLVAGNVTVQV 273
           +N  + EI   Y+    + G++E ++L  H F+NAML  + GL A  LG+   G++ ++V
Sbjct: 243 KNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEV 302

Query: 274 VFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
           +FS  G+G +  +  MN+DY ++ G   +  L  LV   + D++Y ++DPR+
Sbjct: 303 IFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354


>gi|10954943 Probable accD [Agrobacterium tumefaciens]
           >gi|6498296|dbj|BAA87748.1| (AB016260) Probable accD
           [Agrobacterium tumefaciens]
           Length = 308
           
 Score =  120 bits (299), Expect = 2e-26
 Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 29/330 (8%)

Query: 1   MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
           M+S I   L+R  ++ +LT    VT  FII R+  GDP   +L   AT PEA     + F
Sbjct: 1   MISFILARLVRAIIVMMLT----VTFVFIILRL-GGDPARAMLGENAT-PEAL----AAF 50

Query: 61  VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
             A+GLD+ + EQ++ +  + L GD G+S     + V  ++ E +P  L L   A V S 
Sbjct: 51  RTAWGLDRSIPEQFLIYLASALRGDFGVSAAD-GREVFTVIAERIPKTLTLTISAFVLSI 109

Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
            VG   G +A   ++   D  +M       + P F   + L ++F       P SG    
Sbjct: 110 LVGIPAGIIAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSG---- 165

Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
               S +W+       H  LP  +  +V     A   R+ +I  +E  YI    + G+ +
Sbjct: 166 ----SSTWQ-------HAILPVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPK 214

Query: 239 -KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
            +++++HA  NA +P VT L      L+ G+  V+ VF++PG+G   ++ I   D  ++Q
Sbjct: 215 WEVVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQ 274

Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
              L+    ++  N ++D+LYA+++P++R+
Sbjct: 275 AMILLFTAFMVTINLIVDVLYAVLNPKIRL 304


>pir||T03433 probable transport protein accD - Agrobacterium tumefaciens plasmid
           pTiC58 >gi|3153180|gb|AAC17200.1| (AF010180) AccD
           [Agrobacterium tumefaciens]
           Length = 306
           
 Score =  119 bits (295), Expect = 5e-26
 Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 31/330 (9%)

Query: 1   MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
           M+S I   L+R  ++ +LT    VT  FII R+  GDP   +L   AT PEA     + F
Sbjct: 1   MISFILARLVRAIIVMMLT----VTFVFIILRL-GGDPARAMLGENAT-PEAL----AAF 50

Query: 61  VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASW 120
             A+GLD+ + EQ++ +  + L GD G+S     + V  ++ E +P  L L   A V S 
Sbjct: 51  RTAWGLDRSIPEQFLIYLASALRGDFGVSAAD-GREVFTVISERIPKTLTLTISAFVLSI 109

Query: 121 FVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSY 178
            VG   G +A   ++   D  +M       + P F   + L ++F       P SG    
Sbjct: 110 LVGIPAGIIAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSG---- 165

Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
               S +W+       H  LP  +  +V     A+  R  +I  +E  YI    + G+ +
Sbjct: 166 ----SSTWQ-------HAILPVATFGLVNAAAIALPFR--VIEVLEQPYIAAARADGIPK 212

Query: 239 -KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
            +++++HA  NA +P VT L      L+ G+  V+ VF++PG+G   ++ I   D  ++Q
Sbjct: 213 WEVVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQ 272

Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
              L+    ++  N ++D+LYA+++P++R+
Sbjct: 273 AMILLFTAFMVTINLIVDVLYAVLNPKIRL 302


>pir||A71212 probable oligopeptide transport system permease protein appB -
           Pyrococcus horikoshii >gi|3258405|dbj|BAA31088.1|
           (AP000007) 349aa long hypothetical oligopeptide
           transport system permease protein appB [Pyrococcus
           horikoshii]
           Length = 349
           
 Score =  119 bits (295), Expect = 5e-26
 Identities = 79/277 (28%), Positives = 128/277 (45%), Gaps = 11/277 (3%)

Query: 58  SYFVQAFGLDKPLWEQYISFWKAVLHGDLG---ISIYYYPKPVAEILKEALPYDLALLFP 114
           +Y+   F LD+P W + + + K  +  D G   I I+   + V  I+  ALP  + L   
Sbjct: 71  AYYRHQFKLDRPYWWRVLYYSKRTIMLDFGNTRIPIFGTERNVKNIISLALPRTILLFTT 130

Query: 115 ALVASWFVGNWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPI 172
           A +    +G  LG  A +      D  L  +     + P +WF ++   +F FKLGWFP 
Sbjct: 131 AQIIVIIIGLLLGVKAAQMVGSAFDRSLSILALVTTSIPMWWFGMMSLLIFAFKLGWFPA 190

Query: 173 SGAYSYGIIPSLSW-EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYL 231
           +        P+L+    + D      LP  ++  V  GGWA   RN++I  ++ D+I   
Sbjct: 191 NSMPD----PNLTGLAHVLDVAKRLVLPIFTIVFVLFGGWAWVTRNIMITTMQEDFIMAA 246

Query: 232 ESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMN 290
            + GV E K++  HA + A  P VT     L   + G +  + VF++PG+G V    I  
Sbjct: 247 RAKGVPERKVIYGHALRAAAPPIVTMTIFSLLGSLGGAIITESVFNWPGMGRVYWIAIQT 306

Query: 291 QDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
            +  L+ G   + +   L    + D+ Y  +DPRVR+
Sbjct: 307 NEINLVMGLTFISVALYLTGVIIADISYGFLDPRVRV 343


>pir||F72720 probable oligopeptide transport system permease protein oppB
           APE0303 - Aeropyrum pernix (strain K1)
           >gi|5103942|dbj|BAA79258.1| (AP000059) 342aa long
           hypothetical oligopeptide transport system permease
           protein oppB [Aeropyrum pernix]
           Length = 342
           
 Score =  118 bits (294), Expect = 7e-26
 Identities = 94/344 (27%), Positives = 164/344 (47%), Gaps = 31/344 (9%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +Y++ + +  I T F    + FI+ R++ GDP A+ +    T PE  + +     + +  
Sbjct: 4   KYIIYRFLSAIPTLFGLSILVFILTRLV-GDPAAIYIHPDMT-PEDVQRVR----ELYHF 57

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           D PL+ QYI + K VL GDLG S+     PV E +K  LP  L L   A   S  VG +L
Sbjct: 58  DDPLYVQYIYWLKGVLQGDLGYSVTAN-MPVTEAIKSFLPATLELALYAFTLSIIVGVYL 116

Query: 127 G--ALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLF--------------TFKLGWF 170
           G  A A K+K +D+    +     + P FW A++L YLF                +  + 
Sbjct: 117 GTKAAANKDKLIDHLTRLLALSGYSMPVFWLALMLLYLFYNVLDFVGPGRLSLEVRFKYM 176

Query: 171 PISGAYSY--GIIP-----SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEI 223
           P  G + +  G++      + + E   D + H   P L+   + +  +   +R+ +I E+
Sbjct: 177 PPYGDFKFYTGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIEEM 236

Query: 224 EADYIRYLESLGVSEKILMK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGY 282
             +Y+ +  S G+  ++++K +  +N+ +  V    LQ   L++G V  + VF++PG+G 
Sbjct: 237 NKEYVDFALSKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGLGR 296

Query: 283 VLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
                 +  D   + G  L +    +V N  +D+L A +DPR+R
Sbjct: 297 FAANAAIQLDPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIR 340


>pir||F75529 probable peptide ABC transporter, permease protein - Deinococcus
           radiodurans (strain R1)
           >gi|6458040|gb|AAF09943.1|AE001896_8 (AE001896) peptide
           ABC transporter, permease protein, putative [Deinococcus
           radiodurans]
           Length = 340
           
 Score =  118 bits (294), Expect = 7e-26
 Identities = 84/283 (29%), Positives = 136/283 (47%), Gaps = 22/283 (7%)

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
           GL  P   QY  +  + + GDLG S     K V + +KE LP  + L     +    +  
Sbjct: 57  GLRDPFPVQYGRWAASAVQGDLGFS-RASGKDVIDTIKERLPNTIELTLLTAIPILLLSV 115

Query: 125 WLGALAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFP----------- 171
           WLG+L+  NK   +D  L  +     + P F   I+L  +F   LGW P           
Sbjct: 116 WLGSLSALNKDKFIDQVLRVLTILGYSLPTFVLGIVLLAIFYAYLGWLPGAGQLEVVNQF 175

Query: 172 -------ISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
                   +G  +   + +  W    D + H  LP  +L +V        MRN ++  + 
Sbjct: 176 AVSDMKRYTGMLTVDALLNGRWSVAWDVVRHMILPATTLAIVSSADIIKVMRNSMLDVLS 235

Query: 225 ADYIRYLESLGVSEKIL-MKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYV 283
           +DYIR   + G++  ++  KHA +NA+LP +T   L +  L++G++  + +F+YPGIG  
Sbjct: 236 SDYIRTARAKGLTPGVVNRKHARRNALLPVITLGGLLIINLLSGSLITETIFAYPGIGQW 295

Query: 284 LMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
           ++Q  +  D   + G  L+  L V+V N ++D+LY I+DPRVR
Sbjct: 296 VVQSALQIDLAGVLGFALLSALIVVVMNTLVDILYGIVDPRVR 338


>sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
           >gi|628818|pir||S39586 peptide transport system permease
           protein sapB - Salmonella typhimurium
           >gi|414209|emb|CAA52285.1| (X74212) sapB [Salmonella
           typhimurium]
           Length = 321
           
 Score =  118 bits (293), Expect = 9e-26
 Identities = 87/335 (25%), Positives = 148/335 (43%), Gaps = 46/335 (13%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           + LR+ ++ ++T FF   I F +    P  P+                            
Sbjct: 4   FTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQ--------------------------G 37

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
             LW  ++ ++  +LH D G+S     + ++E LKE  P  + L   A   +  VG  +G
Sbjct: 38  ASLWNAWVFWFNGLLHWDFGVSSIN-GQLISEQLKEVFPATMELCILAFGFALMVGIPVG 96

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--YGIIPS 183
            +AG  ++K  D ++  +     + P FW A+LL+  F+  LGW P+SG +   Y + P 
Sbjct: 97  TVAGVTRSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPV 156

Query: 184 LSW--------------EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
             +              E +   + H  LP L+L +         MR   I   + +Y++
Sbjct: 157 TGFAIIDAWISDCPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVK 216

Query: 230 YLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
              + G+S   IL +H   NA+ P +  L LQ   ++   +  ++VFS+PG+G  L+  I
Sbjct: 217 AAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAI 276

Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
             QDY  I    +VI   V+V N + D+L A+ +P
Sbjct: 277 RQQDYAAISAGVMVIGSLVIVVNVISDILGAMANP 311


>pir||D75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
           (strain R1) >gi|6460715|gb|AAF12420.1|AE001863_45
           (AE001863) peptide ABC transporter, permease protein
           [Deinococcus radiodurans]
           Length = 328
           
 Score =  118 bits (293), Expect = 9e-26
 Identities = 90/330 (27%), Positives = 159/330 (47%), Gaps = 19/330 (5%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y LR+ +  I T      + F++ ++ PG      + ++   P  +K   +   +  GLD
Sbjct: 9   YTLRRILGMIPTLLVISVLCFLVIKLQPGS----FIDQYLEDPRFSKETVANITRQLGLD 64

Query: 68  KPLWEQYISFWKAVLHG-DLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           +P W+QY+++   V+   D G S +    PV  I+ E L + + +    L  +W +   L
Sbjct: 65  QPAWKQYLNWITGVVTRLDFGYS-FASGAPVTSIIGERLGWTVFIAALTLALTWLIAVPL 123

Query: 127 GALAGKNK-----KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
           G     N+     ++ N+L    Y   A P F  A+LL  L   +LG   + G +   +I
Sbjct: 124 GIYTAFNRYGIPAQIANFLG---YVGLAIPDFLAALLLVVLVR-QLGGTNVGGLFRPDMI 179

Query: 182 PSLSWEFIK--DYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE- 238
            +  W F K  D L H  +P L++ +  + G    MR   +  +  DYIR  ++ G+ + 
Sbjct: 180 DA-PWSFAKVLDLLAHLWIPVLAVGLEGVAGLMRQMRASTLDVLSQDYIRTAKAKGLPQG 238

Query: 239 KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
           +++ KHA +NA+ P ++   L L  L++G + + +V S P IG +L   ++N+D +    
Sbjct: 239 RVIWKHAVRNAINPLISLAGLSLPTLISGTIIISIVMSLPTIGPLLYDSLLNKDQYTAMT 298

Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
             ++    +L+ N + DL  A  DPRVR S
Sbjct: 299 LLMLSAFLLLIGNLLSDLALAWADPRVRYS 328


>pir||C71545 probable oligopeptide permease - Chlamydia trachomatis  (serotype
           D, strain UW3/Cx) >gi|3328605|gb|AAC67791.1| (AE001293)
           Oligopeptide Permease [Chlamydia trachomatis]
           Length = 313
           
 Score =  117 bits (290), Expect = 2e-25
 Identities = 93/334 (27%), Positives = 153/334 (44%), Gaps = 36/334 (10%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIA-----VLLSRFATLPEATKYLHSYFVQ 62
           Y+ R+ +  +L+ +  VT+ F I + +PGDP       +L S    L +           
Sbjct: 4   YIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFNDENGNILSSETLALLK----------N 53

Query: 63  AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
            +GLDKPL+ QY+ + K +L  D G S+ Y  + V  I+  ALP    L   +L  S F 
Sbjct: 54  RYGLDKPLFTQYLIYLKCLLTLDFGESLIYKDRTVISIIAAALPSSAILGLESLCLSLFG 113

Query: 123 GNWLGALAGKNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPIS--GAYSYG 179
           G  LG LA   KK     +     +Q S P F     L Y+F  K    PI+  G +S+ 
Sbjct: 114 GITLGILAAFYKKSCGRTIFFSSVIQISVPAFVIGAFLQYVFAIKYSCLPIACWGNFSHT 173

Query: 180 IIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE- 238
           ++PS++                  F+ QL   ++         ++ DY+    + G+S  
Sbjct: 174 LLPSIALAITP-----------MAFITQLTCASVSAN------LKKDYVLLAYAKGLSPF 216

Query: 239 KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQG 298
           K+L+KH    A+ P ++  A  +  L+ G  +++ +F  PG+G   +  I  +DY +  G
Sbjct: 217 KVLIKHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPITLG 276

Query: 299 AFLVIILTVLVANFVIDLLYAIIDPRVRISYTEE 332
             +      ++ +   DLL A IDP++R SY +E
Sbjct: 277 LSVFYGAFFMLTSLCCDLLQAWIDPQIRYSYGKE 310


>pir||E72107 peptide ABC transporter, permease protein CP0568 [imported] -
           Chlamydophila pneumoniae (strains CWL029 and AR39)
           >gi|4376470|gb|AAD18352.1| (AE001606) Oligopeptide
           Permease [Chlamydophila pneumoniae CWL029]
           >gi|7189480|gb|AAF38387.1| (AE002215) peptide ABC
           transporter, permease protein [Chlamydophila pneumoniae
           AR39] >gi|8978572|dbj|BAA98409.1| (AP002545)
           oligopeptide permease [Chlamydophila pneumoniae J138]
           Length = 314
           
 Score =  116 bits (288), Expect = 4e-25
 Identities = 83/333 (24%), Positives = 156/333 (45%), Gaps = 34/333 (10%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA---- 63
           Y+  + +  +L+ +  +T+ F++ + +PGDP            E    L    +Q     
Sbjct: 4   YIKNRILFNLLSLWIVLTLTFLVMKTIPGDPFN---------DEGCNVLSEEVLQTLKSR 54

Query: 64  FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
           +GLDKPL++QY  +  ++   D G S+ Y  + V  I+  A P    L   +L  S   G
Sbjct: 55  YGLDKPLYQQYTQYLHSIAKLDFGNSLVYKDRKVTNIISTAFPISAILGLQSLFLSIGGG 114

Query: 124 NWLGALAG-KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPIS--GAYSYGI 180
             LG +A  K KK   Y++       + P F FA LL Y+F  K+   PI+  G++++ I
Sbjct: 115 IALGTIAALKKKKQRRYILGASILQISIPAFIFATLLQYVFAVKIPLLPIACWGSFTHTI 174

Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
           +P+L+                  F++QL        + +   +  DY+    + G+S  K
Sbjct: 175 LPTLALAVTP-----------MAFIIQL------TYSSVSAALNKDYVLLAYAKGLSPLK 217

Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
           +++KH    A+ P ++  A     ++ G   ++ +F  PG+G   +  I  +DY +  G 
Sbjct: 218 VVIKHILPYAIFPTISYSAFLTTTVITGTFAIENIFCIPGLGKWFICSIKQRDYPVALGL 277

Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRISYTEE 332
            +      ++++ + DL+ +IIDP++R ++ +E
Sbjct: 278 SVFYGTLFMLSSLLSDLIQSIIDPQIRYAHGKE 310


>sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
           >gi|7449120|pir||H64877 peptide transport system
           permease protein sapB - Escherichia coli
           >gi|1279401|emb|CAA65938.1| (X97282) SapB protein
           [Escherichia coli] >gi|1742115|dbj|BAA14854.1| (D90767)
           Peptide transport system permease protein SapB.
           [Escherichia coli] >gi|1742124|dbj|BAA14863.1| (D90768)
           Peptide transport system permease protein SapB.
           [Escherichia coli] >gi|1787550|gb|AAC74375.1| (AE000227)
           homolog of Salmonella peptide transport permease protein
           [Escherichia coli K12]
           Length = 321
           
 Score =  116 bits (287), Expect = 5e-25
 Identities = 86/335 (25%), Positives = 146/335 (42%), Gaps = 46/335 (13%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           + LR+ ++ I+T F    + F +    P  P+                            
Sbjct: 4   FTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQ--------------------------G 37

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
             LW  ++ ++  ++H D G+S     +P+AE LKE  P  + L   A   +  VG  +G
Sbjct: 38  ASLWNAWVFWFNGLIHWDFGVSSIN-GQPIAEQLKEVFPATMELCILAFGFALIVGIPVG 96

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--YGIIPS 183
            +AG  ++K  DN +  I     + P FW A+LL+   +  LGW P+SG +   Y + P 
Sbjct: 97  MIAGITRHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPI 156

Query: 184 LSW--------------EFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
             +              E I   + H  LP ++L +         MR   I   + +Y++
Sbjct: 157 TGFALIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVK 216

Query: 230 YLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
              + G+S   IL +H   NA+ P +  L LQ   ++   +  ++VFS+PG+G  L+  I
Sbjct: 217 AAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI 276

Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
             QDY  I    +V    V++ N + D+L A+ +P
Sbjct: 277 RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANP 311


>gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S77573
           oligopeptide transport protein homolog ophB -
           Agrobacterium tumefaciens plasmid pTiR10
           >gi|1215732|gb|AAC44509.1| (AF242881) ophB
           [Agrobacterium tumefaciens]
           Length = 334
           
 Score =  115 bits (284), Expect = 1e-24
 Identities = 91/327 (27%), Positives = 157/327 (47%), Gaps = 16/327 (4%)

Query: 4   GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA 63
           G+  +LL++    +       ++ FI   ++PGD    +L R AT P A   L     + 
Sbjct: 19  GLALHLLKRVAAGLGLLLVLSSLIFIGSTLLPGDAATAILGRSAT-PAALAELR----ER 73

Query: 64  FGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG 123
            GL++PL  +Y+S+  A +HGDLG S+    + VA+ +   L   L L     + +  + 
Sbjct: 74  LGLNEPLIVRYMSWLNAFVHGDLGSSLIN-GRSVADSIGARLGNTLFLAASVALVAVPLA 132

Query: 124 NWLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGII 181
            +LG L+ +   + LD  +  +     A P F+   LL Y+ +  LGWF    A S  + 
Sbjct: 133 VFLGVLSVRYRGRVLDRTIALVTRTFVALPEFFIGYLLIYILSVSLGWF----ASSSTVF 188

Query: 182 PSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KI 240
             + +    D +    LP L+L  V  G     +R  ++  +E  +I      GVS   +
Sbjct: 189 ARMGFA---DRVVAIALPCLTLVFVVTGHITTMVRASVLDVMERPFIEMAALKGVSHGAV 245

Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
           + +HA  NA+ P +  + + L  LVAG V V+V+F YPGIG  ++  ++N+   ++Q   
Sbjct: 246 VWRHALPNALSPIINVVLVNLAYLVAGVVVVEVIFVYPGIGQYMVDSVVNRHVPVVQATA 305

Query: 301 LVIILTVLVANFVIDLLYAIIDPRVRI 327
           L+     +  N   D+L  + +PR+R+
Sbjct: 306 LLFAGVYIGLNLCADVLSVLANPRLRL 332


>pir||F81699 peptide ABC transporter, permease protein TC0472 [imported] -
           Chlamydia muridarum (strain Nigg)
           >gi|7190513|gb|AAF39320.1| (AE002315) peptide ABC
           transporter, permease protein [Chlamydia muridarum]
           Length = 314
           
 Score =  114 bits (283), Expect = 1e-24
 Identities = 88/329 (26%), Positives = 154/329 (46%), Gaps = 26/329 (7%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y+ ++ +  +L+ +  VT+ F I R +PGDP         +     + + +   + +GLD
Sbjct: 4   YIKKRLLFNLLSLWVVVTLTFFIIRTIPGDPFNDENGNVLS-----EEILAILNKRYGLD 58

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           KPL+ QY+ + K +L  D G S+ Y  + V  I+  ALP    L   +L  + F G  LG
Sbjct: 59  KPLFTQYLIYLKCLLTLDFGESLIYKDRTVIGIITTALPSSAILGLESLCLALFGGITLG 118

Query: 128 ALAGKNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPIS--GAYSYGIIPSL 184
            LA   K+     +     +Q S P F     L Y+F  K    PI+  G +S+ ++PS+
Sbjct: 119 ILAAFYKRGCGRTIFFSSIIQISVPAFVIGAFLQYIFAIKYSLLPIACWGDFSHTLLPSI 178

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMK 243
           +                  F+ QL   ++         ++ DY+    + G+S  K+L+K
Sbjct: 179 ALAIAP-----------MAFITQLTYASVSA------SLKKDYVLLAYAKGLSPLKVLIK 221

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
           H    A+ P ++  A  +  L+ G  +++ +F  PG+G   +  I  +DY +  G  +  
Sbjct: 222 HVLPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPMTLGLSVFY 281

Query: 304 ILTVLVANFVIDLLYAIIDPRVRISYTEE 332
               ++ + + DLL A IDP++R SY +E
Sbjct: 282 GAFFMLISLLCDLLQAWIDPQIRYSYGKE 310


>gb|AAC18097.1| (AF058302) membrane protein of putative ABC transporter
           [Streptomyces roseofulvus]
           Length = 323
           
 Score =  113 bits (281), Expect = 2e-24
 Identities = 100/324 (30%), Positives = 148/324 (44%), Gaps = 22/324 (6%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLH--SYFVQAF 64
           RYL R+    +L  + A T+ F +  ++PGDP+  +LS  A    A    H         
Sbjct: 4   RYLARRLGRVVLVVWAAYTLSFAVLYLLPGDPVQTMLSGAAGGDGAAVDPHEAQRLRHTL 63

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
           GLD+PL  QY S     L GDLG SI     PV   L +ALP  L++  PALV S  V  
Sbjct: 64  GLDRPLAVQYTSMLGHALRGDLGTSI-RSGAPVRGQLAQALPDTLSVALPALVLSVLVAL 122

Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
            L  L    + + L      +     A P FW  +LL+   +F+ G  P +G    G  P
Sbjct: 123 CLALLGAWPRRRALRRAATALPSLGTAMPSFWLGLLLAQWVSFRWGLLPATGG---GRSP 179

Query: 183 SLSWEFIKDYLHHWTLPF-LSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KI 240
             +       L   TL   +   + Q+ G  +      + E  AD  R   S G    ++
Sbjct: 180 RAT------LLAALTLALPIGCVLAQVLGRGL---RAALAEPYADVAR---SRGAGRARL 227

Query: 241 LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
           L+  A +NA +  +  L +  G L+AG V V+ VF+  GIG + M  +  QD  ++QG  
Sbjct: 228 LLARALRNASVAALALLGVVCGQLLAGAVLVETVFARGGIGRLAMDAVTYQDLPVVQGVV 287

Query: 301 LVIILTVLVANFVIDLLYAIIDPR 324
           ++  L   + N V+DLL  +++PR
Sbjct: 288 VLAALVAALVNLVVDLLLPLLEPR 311


>sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1283C
           >gi|7442425|pir||G70771 probable peptidetransport system
           permease - Mycobacterium tuberculosis (strain H37RV)
           >gi|1322407|emb|CAA97749.1| (Z73419) oppB [Mycobacterium
           tuberculosis]
           Length = 325
           
 Score =  112 bits (278), Expect = 5e-24
 Identities = 88/331 (26%), Positives = 159/331 (47%), Gaps = 17/331 (5%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           RYL R+ + Y++    A  + + +  +    P+  L+ R    P+A     ++ +   GL
Sbjct: 3   RYLARRLLNYLVLLALASFLTYCLTSLA-FSPLESLMQRSPRPPQAVIDAKAHDL---GL 58

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWL 126
           D+P+  +Y ++    + GD G +I    +PV   L   +   L LL    V     G  +
Sbjct: 59  DRPILARYANWVSHAVRGDFGTTIT--GQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVI 116

Query: 127 GALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGW------FPISGAYSY 178
           GA     + +  D  +  +   + ++P F  A LL  L   ++ W      F  +G  S 
Sbjct: 117 GAWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLL-ILGALRVNWAVGIQLFDYTGETSP 175

Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
           G+   + W+ + D L H  LP L+L +    G++   RN ++  +  D+IR   + G++ 
Sbjct: 176 GVAGGV-WDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTR 234

Query: 239 K-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
           +  L+KH  + A++P  T  A  +  LV G V V+ +F + G+G  +++GI  QD  ++ 
Sbjct: 235 RRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVA 294

Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
              +     VL+A  + D++YA +DPRVR+S
Sbjct: 295 AITVFSGAVVLLAGLLSDVIYAALDPRVRVS 325


>pir||T34758 oligopeptide transport system integral membrane protein -
           Streptomyces coelicolor >gi|3402245|emb|CAA20181.1|
           (AL031184) oligopeptide transport system integral
           membrane protein [Streptomyces coelicolor A3(2)]
           Length = 332
           
 Score =  112 bits (277), Expect = 7e-24
 Identities = 94/349 (26%), Positives = 161/349 (45%), Gaps = 38/349 (10%)

Query: 1   MMSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYF 60
           M++ + R L    ++ ++       I F++P+   G  IA+        P A + +    
Sbjct: 1   MLAYLIRRLFAAAVMLVVIILVVFCIFFLVPK-WAGVDIALNFVGKQADPAAVEGVR--- 56

Query: 61  VQAFGLDKPLWEQYISFWKAVLHGDL---GISIYYYPKP-----------VAEILKEALP 106
            +  GL  P++ Q   F+K +  G     G  + +   P           V  +L E  P
Sbjct: 57  -EKLGLGDPVFVQAWEFFKGIFAGRTYAAGGDVTHCAAPCFGYSFKTEQSVWPVLTERFP 115

Query: 107 YDLALLFPALVASWFVGNWLGALAGKNKKL--DNYLMPIFYFLQASPYFWFAILLSYLFT 164
             LAL   A V     G   G L+   +    D   M +     + P ++  +L   +F+
Sbjct: 116 VTLALALGAAVLWLIFGVAAGVLSALKRGTLWDRGAMVVALAGVSLPIYFTGLLSLAIFS 175

Query: 165 FKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWT----LPFLSLFMVQLGGWAIGMRNMII 220
           + LGW  I G +    +P      ++D L  W     LP+++L  +    +A   R  ++
Sbjct: 176 YGLGW--IDGEF----VP------LEDSLTGWLGGMILPWITLAFLYAAMYARITRATML 223

Query: 221 YEIEADYIRYLESLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPG 279
             +  DYIR   + G+ E++++ KHA ++ + P +T L + LG L+ G +  +  FS PG
Sbjct: 224 EILGEDYIRTARAKGLKEQVVISKHAMRSTLTPLLTMLGMDLGALMGGAILTETTFSLPG 283

Query: 280 IGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
           +G  ++  I N D   I G  L+  L VL+AN V+D+LYA+IDPRVR++
Sbjct: 284 LGQKVLDAIKNHDLPFILGVVLITSLAVLIANLVVDILYAVIDPRVRLA 332


>pir||F82377 ABC transporter, permease protein VCA1099 [imported] - Vibrio
           cholerae (group O1 strain N16961)
           >gi|9658546|gb|AAF96991.1| (AE004435) ABC transporter,
           permease protein [Vibrio cholerae]
           Length = 318
           
 Score =  112 bits (277), Expect = 7e-24
 Identities = 88/313 (28%), Positives = 152/313 (48%), Gaps = 31/313 (9%)

Query: 25  TIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA----FGLDKPLWEQYISFWKA 80
           T+ FI+ R +PGD    +  R A       Y+++    A     GLD+  +E Y+ +   
Sbjct: 21  TLTFILMRFIPGD----VAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELYLQWLWD 76

Query: 81  VLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK--NKKLDN 138
           +LH +LG S+    +PV   +   L + L L   A + S F+   +G   GK  ++  DN
Sbjct: 77  LLHLNLGHSLVS-SEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRWADN 135

Query: 139 YLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAY--SYGIIPSLSWEFIKDYLHHW 196
             +     ++A P F   + L  LF  +L W P++G     + I+P+L+           
Sbjct: 136 LALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLILPALA----------- 184

Query: 197 TLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVS-EKILMKHAFKNAMLPQVT 255
               L+L M  +    I  RN     +++ Y  +    G++ E+   +HA +N  LP + 
Sbjct: 185 ----LALGMAAMSSRMI--RNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMA 238

Query: 256 GLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVID 315
            + +Q   LV G V ++ +FS+PG+G+ L   I  +D  +IQG+ LV+ L  +  N ++D
Sbjct: 239 FVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVD 298

Query: 316 LLYAIIDPRVRIS 328
           L+   +DPR+R+S
Sbjct: 299 LVQYALDPRLRLS 311


>gb|AAC69838.1| (AF076683) oligopeptide transporter putative membrane permease
           domain [Staphylococcus aureus]
           Length = 311
           
 Score =  111 bits (275), Expect = 1e-23
 Identities = 78/324 (24%), Positives = 151/324 (46%), Gaps = 24/324 (7%)

Query: 5   IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
           +KR  L   ++ +++F     + F++  I   +P   +L    T P  T  L +   + +
Sbjct: 6   LKRIALMFPLMIVVSF-----MTFLLTYITNENPAVTILHAQGT-PNVTPELIAETNEKY 59

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
           G + PL  QY ++    +  + G S Y    PVAE +  A    L L   + V       
Sbjct: 60  GFNDPLLIQYKNWLLEAMQFNFGTS-YITGDPVAERIGPAFMNTLKLTIISSVMVMITSI 118

Query: 125 WLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
            LG ++   + K  D  +  + +FL A P +W A +L    + KL   P SG        
Sbjct: 119 ILGVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGP---- 174

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
                        + LP + + +   G +   +R  ++ ++  DY+ YL + GV    LM
Sbjct: 175 -----------ESYILPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLM 223

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
            H  +NA+   V+   + + +++ G V ++ +F++PG+G + ++ I+  D+ +IQ   L+
Sbjct: 224 LHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLI 283

Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
           + +  +V N + D++ A+++PR+R
Sbjct: 284 VAVLFIVFNTLADIINALLNPRLR 307


>gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1]
           Length = 315
           
 Score =  111 bits (275), Expect = 1e-23
 Identities = 89/324 (27%), Positives = 163/324 (49%), Gaps = 26/324 (8%)

Query: 14  MIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQ 73
           M+ I +F   V I F       GDP+A L  +    P   + LH+  V+   LD+PL ++
Sbjct: 4   MMLIASFLMFVVISF------SGDPLAGL--KTMQPPPPPEVLHAMAVK-LRLDQPLLDR 54

Query: 74  YISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVG---NWLGALA 130
           Y  +   +  GD G SI+      AE++K  L   L LL   +V ++ +    + +GA+ 
Sbjct: 55  YWMWLSGLFVGDFGPSIHNIDIG-AELVKR-LGVSLRLLALGIVLAFLMAVAASVIGAVL 112

Query: 131 GKNKKLDNYLMPIFYFLQASPYFWFAILLSYL-------FTFKLGWFPISGAYSYGIIPS 183
            +    D+ +  +   + + P FW A+ L  L         F+L +    GA   G+  S
Sbjct: 113 -QFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQELGFRLLYTSGDGA---GMTAS 168

Query: 184 LSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILM 242
             W+ +   +    LP ++L M   G W+   R  +I  + ++Y++   + G+SE ++++
Sbjct: 169 TPWDRVLLLIGVLALPTIALSMQACGKWSRYGRVALIDALNSEYVKLARAKGLSETRVVL 228

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
            H  + ++ P +T +A    +++  +V  + VF + G+G +L+ GI N D +++ G  LV
Sbjct: 229 AHGLRTSLAPMLTVVAAGGAVILGESVVTETVFQWRGMGDLLVTGIQNNDVYVVLGWLLV 288

Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
             L ++V N + D+LYA++DPR+R
Sbjct: 289 AGLIIMVFNLIADILYAVLDPRIR 312


>gb|AAG20451.1| (AE005117) dipeptide ABC transporter permease; DppB1 [Halobacterium
           sp. NRC-1]
           Length = 363
           
 Score =  111 bits (274), Expect = 2e-23
 Identities = 99/359 (27%), Positives = 168/359 (46%), Gaps = 35/359 (9%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF--G 65
           Y+ ++ ++ +    F +T+ F+I  + P DP+  +L + AT P A + L       +  G
Sbjct: 6   YIAKRLLLGVPVLLFGLTLTFLILYLGPIDPVLAILGKDAT-PTAARNLEISLGIRYPNG 64

Query: 66  LDKPLWEQYISFWKAVLHGDLGIS-IYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
              PLW QY +F   ++  D G S      +PVA ++   LP  + L F +++ + FVG 
Sbjct: 65  SLVPLWVQYKNFLVNMVTFDFGTSWAIARDQPVAAMIVGRLPATIWLGFWSVLVALFVGI 124

Query: 125 WLGALAGKNKKLDNYLMPIFYFL--QASPYFWFAILLSYLFTFK-----LGWFPI----- 172
            +G  AG N    +     F  +  +A P FW A++LS L T        G F I     
Sbjct: 125 PVGLYAGLNSNSWSDYAASFGGIVWRAMPNFWLAVMLSGLLTAGGVLDGYGDFLIKTDVV 184

Query: 173 ----------SGAYSYGIIPSLSWEFIK-------DYLHHWTLPF-LSLFMVQLGGWAIG 214
                     SG   +  +P L + +I             W LP  L L    +G     
Sbjct: 185 GTSNALQHLFSGIDPFAGVPVLEFFWIPVPNLGPMAEAFKWILPAALVLGSSSMGNEVRI 244

Query: 215 MRNMIIYEIEADYIRYLESLGVS-EKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQV 273
            R  ++  + ++Y+   ++ GVS  +I++KH  +NA++P +  +  +  LL+ G+V V+ 
Sbjct: 245 GRTAVLESLRSEYVDTAKAKGVSPRRIIVKHIGRNAVIPLLPVIMGEFYLLIGGSVLVEK 304

Query: 274 VFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTEE 332
           VFS  GIG + ++   N D  ++     + IL  ++ N + D+LY  IDPR+ +S T E
Sbjct: 305 VFSINGIGNLFIRAAFNSDIPVMMSLVFIFILMQILFNLLQDVLYTYIDPRITLSDTTE 363


>gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
           Length = 323
           
 Score =  111 bits (274), Expect = 2e-23
 Identities = 86/312 (27%), Positives = 148/312 (46%), Gaps = 11/312 (3%)

Query: 14  MIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQ 73
           +I +L    A T  FI+    P DPI   +     L       ++     +GLD+PLWE+
Sbjct: 11  LIILLVLVAAGT--FILLSFSPVDPIRAYIGN--DLLHVPPEQYARIAARWGLDQPLWER 66

Query: 74  YISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGALAGK- 132
           +  ++  +L GD+G S+ +   PVA +++E      ALL  A + S  +G  LG LAG+ 
Sbjct: 67  FGHWFWRLLQGDMGYSMLFN-MPVASVIRERFATSFALLAGAWLLSGVLGVTLGFLAGRF 125

Query: 133 -NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKD 191
            ++  D  +  I Y L + P FW A +LS      L   P+  A+  G   +     + +
Sbjct: 126 LHRWPDKMICRISYLLSSLPTFWIA-MLSGAVCRPLAVLPVCCAWDPG--NNAGTALLSE 182

Query: 192 YLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKH-AFKNAM 250
            L H  LP  +L ++ +G  A+  R  I   +++++IR+  + G     L++H   ++A+
Sbjct: 183 RLRHLVLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARAQGDKGWSLLRHQVLRHAI 242

Query: 251 LPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVA 310
            P +      LG L+ G +  + VF+YPG+G   +   +  D  L+ G  L   L V   
Sbjct: 243 TPALCLQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFCTLLVFAG 302

Query: 311 NFVIDLLYAIID 322
           N +   L  +++
Sbjct: 303 NTISAWLVVVLN 314


>gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB-1) [Sulfolobus
           solfataricus]
           Length = 348
           
 Score =  110 bits (273), Expect = 2e-23
 Identities = 83/347 (23%), Positives = 168/347 (47%), Gaps = 25/347 (7%)

Query: 4   GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLS----RFA-TLPEATKYLHS 58
           G   Y+++K +IY       +TI +I    +  + IA  ++    +F+ TL +    L+S
Sbjct: 2   GFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLNS 61

Query: 59  YFVQ------------AFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKP-----VAEIL 101
             +Q            A+GL++P+ ++Y      ++  D G + Y+   P     V+ I+
Sbjct: 62  TQIQIAVEKYRESLIAAYGLNQPIIDKYFIQMYNLMRFDFGTA-YFLQAPSGSREVSSII 120

Query: 102 KEALPYDLALLFPALVASWFVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSY 161
              LP  + L   A +     G  +G L+ K+K  +  +  I     + P +W   +L  
Sbjct: 121 AYYLPNTILLFTTATIVFIVAGTIIGLLSAKSKFWEKVIAIIAVIHSSIPTWWLGFVLIA 180

Query: 162 LFTFKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIY 221
              + +  FP  G  S    P   +++    L+H  LP +++F+V +GG+A  +R+++  
Sbjct: 181 ALAYAVKVFPPGGMTSVPP-PKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRSLVTS 239

Query: 222 EIEADYIRYLESLGV-SEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGI 280
            ++ D++   ++ G+ + +IL +H  ++      T   L L   + G++T +VVF +PG+
Sbjct: 240 IMKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFEWPGV 299

Query: 281 GYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
           G +    I   D  +I G   V+ + +L+  F+ +L+Y ++DPR+++
Sbjct: 300 GLLTYVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIKV 346


>dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 310
           
 Score =  110 bits (272), Expect = 3e-23
 Identities = 79/323 (24%), Positives = 148/323 (45%), Gaps = 19/323 (5%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y++++    I   F    + F+   + P DP  V+L     +P  T  L +   Q  GLD
Sbjct: 4   YVMKRLFSVIPLLFIISFLTFVFINLSPLDPAEVVLQAQG-VPTITDELIAQTKQELGLD 62

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
           +P   QY  +  A L  D G S Y   +PV+ I+  A    L L   + +    +   LG
Sbjct: 63  QPFLIQYFHWLLACLQLDFGHS-YVTKEPVSAIIGPAFFNTLKLTLVSSIVIIVLSILLG 121

Query: 128 ALAGKN--KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
            +      K +D  +    + L   P +  A  + + F+ KL   P SG  SY       
Sbjct: 122 VICAMKGGKAIDKSIRGFSFLLMGIPSYLLASFMIWYFSVKLDLLPTSGLDSY------- 174

Query: 186 WEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMKHA 245
                     + LP   +    +G +   +RN ++  +  D++ Y  + G+SEK +  H 
Sbjct: 175 --------QSYILPVTVITASYVGIYFRSVRNSMLSHLNEDFVLYGRACGISEKKVTIHI 226

Query: 246 FKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIIL 305
            +N++   ++   + +  ++ G V V+ VF++PG+G + ++ I+N+D+ +IQ   L++ +
Sbjct: 227 LRNSLQVAISIFCMGIPTILGGTVVVENVFAWPGLGSLSVKSILNRDFPIIQAYVLILAV 286

Query: 306 TVLVANFVIDLLYAIIDPRVRIS 328
           + +  N   D++ A ++P+ R S
Sbjct: 287 SFVFFNTFSDIINAAMNPKQRKS 309


>gi|10954708 hypothetical ABC-transporter gene~similar to agaB gene
           [Agrobacterium rhizogenes] >gi|8918708|dbj|BAA97773.1|
           (AB039932) hypothetical ABC-transporter gene~similar to
           agaB gene [Agrobacterium rhizogenes]
           >gi|10567372|dbj|BAB16181.1| (AP002086) hypothetical
           ABC-transporter gene~similar to agaB gene [Agrobacterium
           rhizogenes]
           Length = 319
           
 Score =  109 bits (271), Expect = 4e-23
 Identities = 87/344 (25%), Positives = 160/344 (46%), Gaps = 53/344 (15%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           R LL+  +I +L  F    I F + R++PGDP  +++   A  P+A   + +   +  GL
Sbjct: 2   RRLLQGGLIILLVIF----IIFTLLRVVPGDPARLIVGGMA--PDAVVAMKA---KELGL 52

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKP-------------------VAEILKEALPY 107
           D+ +  Q++S+   +  GDLG S +  PK                    V +++   LP 
Sbjct: 53  DRAIPLQFVSYLGHLATGDLGTS-FVRPKSGASLAGSAYNDPTREERAKVLDLILGTLPM 111

Query: 108 DLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTF 165
            L L   ALV +  V   LG   G  + +  D   + +     ++P FW  I+L+   + 
Sbjct: 112 TLQLAAVALVIALLVAVPLGLAGGLYQGRWPDKLALALGSIFVSTPNFWLGIVLTLFLSV 171

Query: 166 KLGWFPISG--AYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEI 223
           KL   P  G   + Y I+P++                  +  V++  + +    + + ++
Sbjct: 172 KLRVLPAIGYNGFEYTILPAI------------------VLAVEIAPFILRTLTVSVAQV 213

Query: 224 -EADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIG 281
              D+I+     G+S  + +  H   N+ +P +  L +QLG+L+ G + V+ +F YPG+G
Sbjct: 214 LREDFIQLAAVRGLSRGRTIFSHVLGNSAVPLINLLGVQLGMLLGGVLVVEFIFDYPGLG 273

Query: 282 YVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
            + +  +  +D+ LIQG  + I +  +V N ++DL+   IDPR+
Sbjct: 274 LLTINAVQQRDFPLIQGVAIFISVMFVVINILVDLIAMTIDPRL 317


>gb|AAC69843.1| (AF076684) oligopeptide transporter putative membrane permease
           domain [Staphylococcus aureus]
           Length = 328
           
 Score =  109 bits (269), Expect = 6e-23
 Identities = 87/326 (26%), Positives = 160/326 (48%), Gaps = 25/326 (7%)

Query: 5   IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
           I + +L + M  I+  F   T+ FI+ ++ PG+P+  +L        +T+ +++      
Sbjct: 3   IIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKIL-HLDVAQVSTEQINA-TKDKL 60

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
           GL+  L  Q+  +   +LH +LG S +   +PV +IL    P  L + F  LV S  +  
Sbjct: 61  GLNDSLLVQWWHWMNHLLHFNLGKS-FESKEPVTQILFNYAPITLLISFSTLVVSLCISI 119

Query: 125 WLGALAGK--NKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
            LG +A K  +K  D  +  I     + P F+  I+L ++ T  +             I 
Sbjct: 120 PLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMN------------ID 167

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILM 242
           S+        L  + LP ++L +         +R+ ++  ++++ ++     G++E+ ++
Sbjct: 168 SV-------ILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYIL 220

Query: 243 KH-AFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFL 301
            H   K  +LP +  L + LG L+ G V ++ +F  PGIGY+LM  I ++DY +IQG  L
Sbjct: 221 IHDLLKPTILPIIPLLGISLGSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVL 280

Query: 302 VIILTVLVANFVIDLLYAIIDPRVRI 327
            I   V++ N + DLL  ++DP+ R+
Sbjct: 281 FIGFFVVIINTIADLLTLLLDPKQRL 306


>gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB-2) [Sulfolobus
           solfataricus]
           Length = 333
           
 Score =  108 bits (268), Expect = 8e-23
 Identities = 76/333 (22%), Positives = 156/333 (46%), Gaps = 16/333 (4%)

Query: 4   GIKRYLLRKTMIYILTFFFAVTIDFIIPRIMP---GDPIAVLLSRFATLPEATKYLHSYF 60
           G   Y +++ +  I+     V + + +   +P   G   A+  +    L ++  Y  +  
Sbjct: 7   GFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNII 66

Query: 61  ---VQAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALV 117
                 +G ++PL+ Q+I +  A+   +LG    ++   + E+L + LPY + L  P  +
Sbjct: 67  NDITTLYGFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVL-QYLPYTIILTLPPFI 125

Query: 118 ASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
               +   +GA A   +NK +D+ +          P F+   +L  +F   +   PISG 
Sbjct: 126 FQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAIPISG- 184

Query: 176 YSYGIIPSLSWEFIKDYLHHWTLPFL-SLFMVQLGGWAIGMRNMIIYEIEADYIRYLESL 234
                I  L    I   L  + LP++  +F+       I MRN ++  +++D+++Y    
Sbjct: 185 -----IQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLS 239

Query: 235 GVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYF 294
           G+ E  +   A +N+++P +T   + L  ++ G   ++ +F  PG+GY+ +      +  
Sbjct: 240 GLKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIP 299

Query: 295 LIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
           L+ G+F  + L  LV  + +DL+Y ++DPR+++
Sbjct: 300 LLTGSFFFLTLYALVVLYAMDLIYPLVDPRIKL 332


>pir||E72424 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980546|gb|AAD35154.1|AE001692_11 (AE001692)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 328
           
 Score =  107 bits (265), Expect = 2e-22
 Identities = 82/329 (24%), Positives = 162/329 (48%), Gaps = 19/329 (5%)

Query: 10  LRKTMIYILTFFFAVTI-DFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQA----F 64
           + K ++Y +   F ++I  FII  + PGD    L +   TL ++ + +    ++     +
Sbjct: 5   IAKRVLYAIPLLFVISIVSFIIIELPPGD---YLTTYVMTLRQSGETIDQAALEVLKKRY 61

Query: 65  GLDKPLWEQYISFW--KAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFV 122
           GLDKP+  +Y  +W    +  GD G S + + KPV+++L + + + + +   +   +W  
Sbjct: 62  GLDKPVIVRYF-YWIGNIITKGDFGYS-FMWEKPVSDLLNQRVWWTILISVLSTAFAWVF 119

Query: 123 GNWLGALAGKNK-KLDNYLMPIF-YFLQASPYFWFAILLSYLFTFKLGWFPISGAYS--Y 178
           G  +G  +G ++  + +Y+  +  Y   A+P F  A++L + F F      + G +S  Y
Sbjct: 120 GFLIGVYSGTHQYSIGDYVFTVLGYIGLATPNFLLALILLW-FMFVTTGVSLGGLFSPEY 178

Query: 179 GIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE 238
              P  SW    D L H  +P + L    + G    +R  ++ EI   Y+    + GV E
Sbjct: 179 AGAP-WSWAKFVDLLKHIWIPVVVLGTGSMAGLIRVLRANLLDEINKPYVVAARARGVPE 237

Query: 239 K-ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQ 297
           + ++ K+  + A++P  +     L  +V+G V   +V + P +G +L+  + +QD +L  
Sbjct: 238 RELVWKYPLRVAVIPFASTAGWALPQIVSGAVVTGIVLNLPTVGTLLLDALTSQDMYLAG 297

Query: 298 GAFLVIILTVLVANFVIDLLYAIIDPRVR 326
              L++ +  ++   + D+L A +DPR+R
Sbjct: 298 SLVLILSVFTIIGTLISDILLAWLDPRIR 326


>pir||F72371 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981014|gb|AAD35588.1|AE001726_22 (AE001726)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 345
           
 Score =  107 bits (265), Expect = 2e-22
 Identities = 87/342 (25%), Positives = 150/342 (43%), Gaps = 23/342 (6%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y++R+ ++  L       I F + + +  D +         L + T        + +GL+
Sbjct: 4   YIIRRLLLLPLILLGVTFIVFSMIQSLGPDKLLAAYVNPNMLDKLTPEQMDALKEKYGLN 63

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
                +Y+ +    L GDLG S+    +PV + L   LPY + L   A+    FVG WLG
Sbjct: 64  DFFVVRYVKWLANTLRGDLGWSLVG-KEPVKDALLRRLPYTVELALYAIFPVVFVGIWLG 122

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLS 185
             A   + K LD+++        + P F F +L+  +F   L W P      +      S
Sbjct: 123 VKAAVHRGKFLDHFIRIFAVVGWSFPDFVFGLLVLMIFYSILNWLPPGNLSMWAEEVIKS 182

Query: 186 WEFIK-------------------DYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEAD 226
            EF +                   D L H   P ++L  +         R+ ++  +  +
Sbjct: 183 PEFHRYTKLITIDALLNGRLDIFWDGLKHLIGPIITLSWLWWAYLLRITRSSMLEVLNKE 242

Query: 227 YIRYLESLGVSEKILM-KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLM 285
           Y+R   + G+ E +++ KHA +NA++P  T     +  L +G V V+ VF+  G+G    
Sbjct: 243 YVRTARAKGLPEDVVINKHARRNALIPVTTVAGGMVIGLFSGTVIVETVFNRTGVGSFTA 302

Query: 286 QGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
           Q  +  DY  +  + L     ++V N +ID+LYA+IDPR+R+
Sbjct: 303 QAALQLDYASVMASALFFSTILVVGNLIIDILYALIDPRIRL 344


>pir||T35939 probable transport permease protein - Streptomyces coelicolor
           >gi|4158198|emb|CAA22761.1| (AL035206) putative
           transport permease protein [Streptomyces coelicolor
           A3(2)]
           Length = 334
           
 Score =  104 bits (256), Expect = 2e-21
 Identities = 86/329 (26%), Positives = 150/329 (45%), Gaps = 21/329 (6%)

Query: 6   KRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFG 65
           +R L    ++ ++TF       F I    P DP+       A    A +       +  G
Sbjct: 19  RRALFAVPVVLVVTFGA-----FAIAAASPFDPVRAYAGTAAL--GADQETLDRLRENLG 71

Query: 66  LDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNW 125
           +D+    ++  +  + L GDLG S     +PV +++ E L +   L   A   +  +G  
Sbjct: 72  VDESFVARWWHWLTSALTGDLGHSSVLR-QPVTQVIGERLVWSALLCAVAFAVAVGLGLL 130

Query: 126 LGALAGKN--KKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISG---AYSYGI 180
           LG LA +     LD  +  + Y L+A+P FW A+L  +LF  +    P  G     S  +
Sbjct: 131 LGVLAARRPGSVLDRAVTSLSYTLEAAPVFWIALLAVWLFALQWDVLPAGGLTDTASQQV 190

Query: 181 IPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-K 239
            P            H  LP   L + QL  + + +R  +   +  D +R   + G++E  
Sbjct: 191 TPG-------QVAGHIVLPAGVLAVSQLPWFTLYVRQGVGDALAEDPVRGARARGLAEGT 243

Query: 240 ILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGA 299
           +L+ HA ++ +LP +T +  ++  L+ G + V+ VFS+PGI    ++     D+ L+   
Sbjct: 244 VLVGHALRSGLLPVLTLIGSRVPELITGALLVETVFSWPGIAAATVEAATAVDFPLLAAL 303

Query: 300 FLVIILTVLVANFVIDLLYAIIDPRVRIS 328
            ++  + VL  N + DLLY + DPRV++S
Sbjct: 304 TVLATVAVLAGNLLADLLYGLFDPRVKLS 332


>dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus]
           Length = 320
           
 Score =  101 bits (250), Expect = 1e-20
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 19/245 (7%)

Query: 101 LKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAIL 158
           L    P  L L F A + S  +G  LG +AG  + K LD  +  +     ++P FW A+L
Sbjct: 69  LAVVFPATLELCFFAFLVSLLIGIPLGTVAGMKQGKWLDTSISFMSMSGYSAPIFWVALL 128

Query: 159 LSYLFTFKLGWFPISGAYS----------YGIIPSLSWE------FIKDYLHHWTLPFLS 202
           L  +F+ +   FP++G Y           + II +   +       ++  + H  LP L 
Sbjct: 129 LIMVFSLEYQLFPVAGRYDLLYEIDHVTGFAIIDAFMAKGEYRAHALQSVIEHMVLPCLV 188

Query: 203 LFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQL 261
           L +         MR+ +   +  +YIR     G+S + I+ +H  +NA+ P +  + +QL
Sbjct: 189 LALAPTTQVVGLMRSSVAEVMSQNYIRAARIKGLSNREIVTQHVLRNAIPPIIPKVGVQL 248

Query: 262 GLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAII 321
             ++   +  + +F++PGIG  L+  + NQDY  IQ   +V+   VL AN + DL+ A+I
Sbjct: 249 SSMITLAIITESIFNWPGIGRWLLDALANQDYASIQAGVMVLATLVLTANILSDLIGAMI 308

Query: 322 DPRVR 326
           +P VR
Sbjct: 309 NPLVR 313


>pir||A72537 probable oligopeptide transport permease protein APE1582 -
           Aeropyrum pernix (strain K1) >gi|5105269|dbj|BAA80582.1|
           (AP000062) 363aa long hypothetical oligopeptide
           transport permease protein [Aeropyrum pernix]
           Length = 363
           
 Score =  100 bits (247), Expect = 2e-20
 Identities = 74/303 (24%), Positives = 145/303 (47%), Gaps = 23/303 (7%)

Query: 49  LPEATKYLHSYFVQAFGL------DKPLWEQYISFWKAVLHGDLGISIYYY---PKPVAE 99
           L E ++ L+   ++ +GL      D   W   +   K+ +  D G++ Y Y      + +
Sbjct: 63  LEEKSRQLYENLMERYGLTGNFVQDVATWT--VKLIKSNITFDFGVTQYSYIGGTNVIGD 120

Query: 100 ILKEALPYDLALLFPALVASWFVGNWLG-ALAGKNKKLDNYLMPIFYFLQAS-PYFWFAI 157
           IL  A+     L   A + ++ +G  LG  +A K   + +  + +F  +  S P +W AI
Sbjct: 121 ILLLAMKNTAILFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWVAI 180

Query: 158 LLSYLFTFKLGWFPISGAYSYGIIPSLS---------WEFIKDYLHHWTLPFLSLFMVQL 208
           ++  +F+F L  FP    Y Y  +  L           E  K +L + T+P +++ +V  
Sbjct: 181 IMILIFSFYLRLFPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSF 240

Query: 209 GGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAMLPQVTGLALQLGLLVAG 267
           GG +  +RN+++  ++ D++    + G+ E+ ++  H  + +  P VT LAL +     G
Sbjct: 241 GGASYLIRNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGG 300

Query: 268 NVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRI 327
            +  + VF +PG+G V    I   D  ++  +  V+ +  ++   ++D +Y+++DPRVR 
Sbjct: 301 AIITEAVFGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRVRT 360

Query: 328 SYT 330
             T
Sbjct: 361 GAT 363


>pir||S77118 oligopeptide transport system permease protein appB - Synechocystis
           sp. (strain PCC 6803) >gi|1652757|dbj|BAA17676.1|
           (D90908) oligopeptide transport system permease protein
           [Synechocystis sp.]
           Length = 326
           
 Score = 99.8 bits (245), Expect = 4e-20
 Identities = 80/324 (24%), Positives = 152/324 (46%), Gaps = 17/324 (5%)

Query: 9   LLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDK 68
           + ++  I ++T      + F +  + PG+P+  L    AT P  ++ +     ++ GLD+
Sbjct: 13  ICKRLAIAVITLLGISLVIFSLLALAPGNPLGEL----ATNPSISQEVRDNLRRSLGLDQ 68

Query: 69  PLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGA 128
            L  +Y+ +  ++L GDLG S +    PV +++ + LP  L L+  A + S  +   LG 
Sbjct: 69  ALPIRYLKWLWSLLQGDLGYS-FTSRSPVIDLIGQRLPTTLWLMGTAYLISLAIAIPLGV 127

Query: 129 LAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPI--SGAYSYGIIPSL 184
            A   + +  +  +  I     + P F   +L   +F+ +L W P       +   + SL
Sbjct: 128 TAALYRGRWWEPLISGISLMGFSLPTFLTGLLFILIFSVQLRWLPFIYDSTLTVDSMASL 187

Query: 185 SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR--YLESLGVSEKILM 242
             +     +    +P   L   Q       +R+  + E+  +YIR  Y + LG +  +L 
Sbjct: 188 GTQ-----IRQLLMPVGVLVFYQSAVILRFVRSAALEELPQNYIRTAYAKGLG-TWGMLK 241

Query: 243 KHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLV 302
            H  KNA LP +T +AL +  +  G +  + VF  PGIG +L++ I   D  ++     +
Sbjct: 242 NHLLKNASLPLITLIALDVPTIFTGALVTEQVFRVPGIGALLIESIYRSDTPVVMAVTFL 301

Query: 303 IILTVLVANFVIDLLYAIIDPRVR 326
             + ++  + + DL+Y ++DPR+R
Sbjct: 302 YAVLIVFFSSLADLIYQLVDPRIR 325


>pir||C82170 peptide ABC transporter, permease protein VC1681 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9656197|gb|AAF94831.1| (AE004246) peptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 320
           
 Score = 97.9 bits (240), Expect = 2e-19
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 47/338 (13%)

Query: 8   YLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLD 67
           Y +RK  ++I+T      + + + R  P  P  ++                         
Sbjct: 4   YTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLI------------------------- 38

Query: 68  KPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLG 127
              W+ + S+   ++  + G++      P+   L    P  + L   A + S  VG  +G
Sbjct: 39  -GFWQGWSSYLVQLMEFNFGLN--KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIG 95

Query: 128 ALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYS-------- 177
            LAG  + K LD  +  I     ++P FW A+++   F+     FP++G Y         
Sbjct: 96  TLAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHV 155

Query: 178 --YGIIPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIR 229
             + +I +         + ++  + H TLP L L +         MR  +   +  +YIR
Sbjct: 156 TGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIR 215

Query: 230 YLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
             +  G+S  +I+ +H  +NA+ P +    +QL  ++   +  + +F++PGIG  L+  +
Sbjct: 216 AAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDAL 275

Query: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
            N+D+  IQ   +V+   VL AN + DL+ A  +P VR
Sbjct: 276 ANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313


>gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halobacterium sp.
           NRC-1]
           Length = 326
           
 Score = 94.4 bits (231), Expect = 2e-18
 Identities = 74/325 (22%), Positives = 144/325 (43%), Gaps = 8/325 (2%)

Query: 5   IKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAF 64
           +K Y++++ +   +  + A+T+ F +    P       +   +      +     + +  
Sbjct: 1   MKWYIVKRVLWTFVVMWIALTLTFGLLVASPDTGQTKSVMSCSASGGDAQQCREQYRERQ 60

Query: 65  GLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGN 124
            LDKP+ E+Y+++   +   + G S       +A I  EA PY      P LV S  +G 
Sbjct: 61  NLDKPITERYVNYVTNMATLNWGWSESRSQSVMAAI-SEAWPYTAQYAIPVLVVSTILGY 119

Query: 125 WLGALAGKNK--KLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIP 182
            LG  +      K D     + +F  + P FWFA++L  L      +  IS  Y  GI  
Sbjct: 120 GLGLYSAYKPYTKADYLGSFVGFFGISIPNFWFALVLIILLGTHFEF--ISTYYQSGIPI 177

Query: 183 SLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KIL 241
           +  W  + + +    +P   L    L       R   I ++  ++++  ++ G S+ +++
Sbjct: 178 NQGWASMAN-ITQLLIPSFVLLTASLAWQMRYSRAQAIEQMNQEFVKVAKAKGASQWRLM 236

Query: 242 MKHAFKNAMLPQVTGLALQL-GLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAF 300
           + H F+ A +P  T     L  +  +G+V ++ +FS PG+G +    I  QD  L+    
Sbjct: 237 IHHVFRMAAVPLTTSFVSSLLAIFWSGSVIIEQIFSIPGLGLMTFTAITEQDTTLVLATT 296

Query: 301 LVIILTVLVANFVIDLLYAIIDPRV 325
           ++ +   ++ N + D+ Y I+DPR+
Sbjct: 297 MITVFLAIIGNLIEDVSYTILDPRI 321


>emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.]
           Length = 207
           
 Score = 91.7 bits (224), Expect = 1e-17
 Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 12/179 (6%)

Query: 151 PYFWFAILLSYLFTFKLGWFPISG--AYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQL 208
           P F    +L Y F  +  W P+ G  + + G+ P         +  H  LP ++L +  +
Sbjct: 37  PVFVIGYILIYFFAIQTRWLPVQGYTSINQGVAP---------WFLHLILPTVTLSVPYI 87

Query: 209 GGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAG 267
              A   R  ++  +  DY+R   + G S   +L  HA KNA +P +T + +    ++ G
Sbjct: 88  AFIARITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPILTVIGISFAYMIGG 147

Query: 268 NVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
            V  + VF+ PGIG +++  I N+DY +IQ   ++I    ++ N ++DL Y +IDPR+R
Sbjct: 148 VVLTETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIR 206


>pir||E81253 probable peptide ABC-transport system permease protein Cj1583c
           [imported] - Campylobacter jejuni (strain NCTC 11168)
           >gi|6969000|emb|CAB73571.1| (AL139079) putative peptide
           ABC-transport system permease protein [Campylobacter
           jejuni]
           Length = 314
           
 Score = 86.6 bits (211), Expect = 4e-16
 Identities = 80/323 (24%), Positives = 141/323 (42%), Gaps = 19/323 (5%)

Query: 9   LLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDK 68
           +L++ +  I   FF+  + F++     G      ++    +   +K       Q  GLDK
Sbjct: 1   MLKRLVFSIFIAFFSTFLCFVLLHFSKGS-----IAYANGVNSQSKEFVQRIEQNLGLDK 55

Query: 69  PLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWFVGNWLGA 128
           PL EQY  +    L GDLG+S +   + V +++KE +     L F AL+  + +  +L  
Sbjct: 56  PLLEQYKIWLFKALKGDLGVS-FLSGESVLKLIKERIFNTFILGFSALMLLFLLSVFLAL 114

Query: 129 LAGKNKK--LDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSW 186
           L    K+  +D  +  + +   A P F  A+L   +F       P+ G+   G       
Sbjct: 115 LGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPVMGSSDIG------- 167

Query: 187 EFIKDYLH---HWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEKILMK 243
            F  D+L+   H  LP L L +  L  +    RN I       +I+ L +  + EK +  
Sbjct: 168 -FEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARALREKDIYF 226

Query: 244 HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVI 303
              K ++ P V          + G   V+ VF+Y G+G +L + I+ +DY ++       
Sbjct: 227 LVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDYPIVLALIFFS 286

Query: 304 ILTVLVANFVIDLLYAIIDPRVR 326
           +L      F+ D++  I++PR+R
Sbjct: 287 VLLAAFFTFLSDIVARILNPRLR 309


>sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|2146483|pir||S73942 oligopeptide transport system
           permease protein oppB - Mycoplasma pneumoniae (strain
           ATCC 29342) >gi|1674318|gb|AAB96264.1| (AE000058)
           oligopeptide transport system permease protein OppB
           [Mycoplasma pneumoniae]
           Length = 389
           
 Score = 82.3 bits (200), Expect = 8e-15
 Identities = 74/322 (22%), Positives = 144/322 (43%), Gaps = 39/322 (12%)

Query: 21  FFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGLDKPLWEQYISFWKA 80
           F  +TI F +       P++   S+     EA K      + AFG + PL  +Y  +W+ 
Sbjct: 2   FIVMTIVFFLVNSTGQTPLSATSSKDL---EAVKTQ----LDAFGFNDPLIVRYGRYWQT 54

Query: 81  VLHGDLGISIYYYPKP---VAEILKEALPYDLALLFPALVASWFVGNWLGALAG------ 131
           +  G LG    YY  P   + +I+   +P  L ++    + S+F+G+ LG + G      
Sbjct: 55  LFSGSLGT---YYSSPNQTIDQIVFGRVPNTLYVV----LISFFIGSLLGIIFGMISGLF 107

Query: 132 KNKKLDNYLMPIFYFLQASPYFWFAILL---SYLFTFKLGWFPISGA-YSYGIIPSLSWE 187
           + K +D  +  +     + P F   + L   + LF     +     A +++G        
Sbjct: 108 RGKLIDAVINVLVVLFVSIPSFVVGLGLLKAAGLFRLPPRFINFDDANFNFG-------- 159

Query: 188 FIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAF 246
              ++L    +P LSL       +   +RN ++  +  DYI+   S G+S   + + H F
Sbjct: 160 ---NFLLASIIPILSLVFYTSAAFTYRVRNEVVEVMNQDYIKTARSKGLSTFAVALYHIF 216

Query: 247 KNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILT 306
           +N+++P V      +    +G   ++ +F   G+  +L+  + + +  L+    + I   
Sbjct: 217 RNSIIPSVPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQSNETNLVMFNIMFIQGI 276

Query: 307 VLVANFVIDLLYAIIDPRVRIS 328
            L+A+  I+L+Y ++DPR+RI+
Sbjct: 277 PLLASVFIELIYVLVDPRIRIA 298


>pir||T45279 oligopeptide transport membrane protein bldKC [imported] -
           Streptomyces coelicolor >gi|1532203|gb|AAB09556.1|
           (U68036) BldKC [Streptomyces coelicolor A3(2)]
           Length = 323
           
 Score = 81.5 bits (198), Expect = 1e-14
 Identities = 74/338 (21%), Positives = 151/338 (43%), Gaps = 33/338 (9%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           ++L+R++   +L         F +   +P D   +L       P+A + +H    +  G 
Sbjct: 3   QFLIRRSFGAVLILVLISAFTFFMFFAIPQD--RMLACGKNCNPDALEIIH----KNLGF 56

Query: 67  DKPLWEQYISFWKAVLHGD-----------LGISIYYYPKPVAEILKEALPYDLALLFPA 115
           D+P+  QY  F   +  G             G+S +   + V + + +  P  ++L   +
Sbjct: 57  DQPVTVQYWHFLAGIFTGREFAVGHCDAPCFGVS-FANNQNVWDTILDRFPLTVSLTVGS 115

Query: 116 LVASWFVGNWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGA 175
           L+    VG   G LA KN+    ++  +F           ++++S L  F      ++  
Sbjct: 116 LIVFLIVGLGAGLLAAKNR--GTWIDKVFSS--------GSLVVSSLQIFLGPLVLLALV 165

Query: 176 YSYGIIPSLSWEFIKDYLHHW----TLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYL 231
           YS G +    +  I +    W     LP++ +  +    +A   R+ +I +++ +++R  
Sbjct: 166 YSTGWLQKPKYVPISEDAAGWFAGLLLPWIVMATIFTANYARMSRSSMIEQLQEEHVRAA 225

Query: 232 ESLGVSEKI-LMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMN 290
            + G+S      ++A++ +++P VT L + L  L+ G +  ++ F   GIG       +N
Sbjct: 226 RAKGMSSNYTFFRYAWRGSLVPIVTILGIDLSALMGGGMVTEMTFGLAGIGRSRWSRSIN 285

Query: 291 QDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
           +D  ++ G  LV    ++V N ++D +YA+IDP  R+S
Sbjct: 286 KDLPMLMGVMLVSAALIIVFNLIVDAMYAVIDPASRLS 323


>sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
           >gi|1361737|pir||E64208 oligopeptide transport system
           permease protein oppB homolog - Mycoplasma genitalium
           >gi|1045754|gb|AAC71295.1| (U39688) oligopeptide ABC
           transporter, permease protein (oppB) [Mycoplasma
           genitalium]
           Length = 407
           
 Score = 81.1 bits (197), Expect = 2e-14
 Identities = 67/333 (20%), Positives = 143/333 (42%), Gaps = 30/333 (9%)

Query: 7   RYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFVQAFGL 66
           +Y+L++  + ++  F  ++I F +       P++   +R     +A        +Q FG 
Sbjct: 3   KYILKRLGLAVVAMFIVMSIVFFLVNATGNVPLSATSARDIAAVQAQ-------LQEFGF 55

Query: 67  DKPLWEQYISFWKAVLHGDLGISIYYYPKP---VAEILKEALPYDLALLFPALVASWFVG 123
           + P+  +Y  +W  +          YY  P   + EI+   +P  L ++  + +    +G
Sbjct: 56  NDPIIVRYFRYWAKLFSFQADALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGSLLG 115

Query: 124 NWLGALAGKNKKLDNYLMPIFYFLQASPYFWFAILLSY-LFTFKLGWFPISGAYSYGIIP 182
            +LG ++G N+           FL A+      + +S   F   LG   ++G  +   +P
Sbjct: 116 IFLGMVSGLNRGK---------FLDAAINVLVVLFVSIPSFVVGLGLLKLAGFLN---LP 163

Query: 183 SLSWEF------IKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGV 236
                F         +L    +P LSL       +   +RN ++  +  DYI+  +S G+
Sbjct: 164 PRFINFDDAFFSFDRFLLASIIPILSLVFYSSAAFTYRIRNEVVEVMNQDYIKTAKSKGL 223

Query: 237 SEKILMK-HAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFL 295
               + + H F+N+++P +      +    +G   ++ +F   G+  +L+  +   +  +
Sbjct: 224 GMFAVARYHIFRNSIIPSIPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQVNETNM 283

Query: 296 IQGAFLVIILTVLVANFVIDLLYAIIDPRVRIS 328
           +    L I    L+A+  I+ +Y ++DPR+RI+
Sbjct: 284 VMFNILFIQGIPLLASVFIEFIYVLVDPRIRIA 316


>emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
           Length = 500
           
 Score = 80.4 bits (195), Expect = 3e-14
 Identities = 60/224 (26%), Positives = 109/224 (47%), Gaps = 16/224 (7%)

Query: 113 FPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWF 170
           F  ++ S  VG  LG      KN   D +      F+ A P    +I + Y+  F  G  
Sbjct: 289 FFGVMFSHIVGLPLGLFMARFKNTYFDRFSTATMTFMLALP----SIAVIYVVRFLGGMV 344

Query: 171 PISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRY 230
            +  ++     P L     K Y+    LP L L ++ +    I  R  ++    +D++R+
Sbjct: 345 GLPDSF-----PMLGASDPKSYI----LPALILGILNIPTTVIWFRRYLVDLQASDWVRF 395

Query: 231 LESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIM 289
             S G+SE +I   H FKNAM+P V+G+   + L + G    + VF++PG+G +L+  I 
Sbjct: 396 ARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIK 455

Query: 290 NQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTEEG 333
           + +  +I G   +  +  +V+  + D++  ++DPR+++S  + G
Sbjct: 456 SANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIKLSTKKGG 499


>sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMIC
           >gi|98016|pir||S11150 amiC protein - Streptococcus
           pneumoniae >gi|47344|emb|CAA35214.1| (X17337) AmiC
           protein [Streptococcus pneumoniae]
           Length = 498
           
 Score = 76.9 bits (186), Expect = 3e-13
 Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 16/203 (7%)

Query: 132 KNKKLDNYLMPIFYFLQASPYFWFAILLSYLFTFKLGWFPISGAYSYGIIPSLSWEFIKD 191
           KN  +D+       FL A P       ++ ++  +L    I+   S+ I+ +  W     
Sbjct: 309 KNTWIDSLSTGALTFLLALP------TIALVYIVRLIGSSIALPDSFPILGAGDWR---- 358

Query: 192 YLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSEK-ILMKHAFKNAM 250
               + LP + L ++   G AI +R  +I     D++R+  + G+SEK I  KH FKNAM
Sbjct: 359 ---SYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGLSEKEISNKHIFKNAM 415

Query: 251 LPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVA 310
           +P V+G+   +  ++ G    + VF++PG+G +L+  +   +  ++ G   +     + +
Sbjct: 416 VPLVSGIPAAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFS 475

Query: 311 NFVIDLLYAIIDPRVRISYTEEG 333
             + D+   IIDPR+++  TE+G
Sbjct: 476 RLLGDIWMTIIDPRIKL--TEKG 496


>pir||D71510 probable oligopeptide permease - Chlamydia trachomatis  (serotype
           D, strain UW3/Cx) >gi|3328914|gb|AAC68079.1| (AE001321)
           Oligopeptide Permease [Chlamydia trachomatis]
           Length = 492
           
 Score = 73.7 bits (178), Expect = 3e-12
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 97  VAEILKEALPYDLALLFPALVASWFVGNWLGALAGKNKK--LDNYLMPIFYFLQASPYF- 153
           V+E++K  L   L L    ++  + +    G +   NK   +D+ L  +F  L + P F 
Sbjct: 247 VSEVIKR-LGSSLILSLLPMIVVFILCQVFGMIMAVNKNHWIDHLLNFLFLILFSIPVFV 305

Query: 154 ---WFA--ILLSYLFTFKLGWFPISGAYSYGII--PSLSWEFIKDYLHHWTLPFLSLFMV 206
              W     +L+    F     P SG  S   I     S+E + D + H  LPF ++   
Sbjct: 306 AVPWIIDNFVLNKTVPFTSISMPYSGLCSSPEIFKEMTSFEKLTDIVLHSFLPFCAVSYG 365

Query: 207 QLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLV 265
                +   R + +  +  D+I  L + G+S+  IL++H  KN+    +T LA  L  L+
Sbjct: 366 AFAAQSRLSRAVFLEVLGEDHISALRARGISQYDILVRHVGKNSAATLITSLASSLSALL 425

Query: 266 AGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRV 325
            G + V+ +F   G G    Q I+N+D+ ++  + ++  +  L+   + D+ Y ++DPRV
Sbjct: 426 GGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVIMGSVISLIGYLIGDICYVLLDPRV 485

Query: 326 RI 327
           ++
Sbjct: 486 QL 487


>pir||D72059 peptide ABC transporter, permease protein, probable CP0150
           [imported] - Chlamydophila pneumoniae (strains CWL029
           and AR39) >gi|4376893|gb|AAD18737.1| (AE001644)
           Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
           >gi|7189086|gb|AAF38032.1| (AE002176) peptide ABC
           transporter, permease protein, putative [Chlamydophila
           pneumoniae AR39]
           Length = 493
           
 Score = 72.2 bits (174), Expect = 8e-12
 Identities = 65/244 (26%), Positives = 115/244 (46%), Gaps = 16/244 (6%)

Query: 97  VAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYF- 153
           ++E++K  L   L L    ++  + +    G +    +N+ +D+ L  IF  L + P F 
Sbjct: 248 ISEVIKR-LRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306

Query: 154 ---WFA--ILLSYLFTFKLGWFPISGAYS----YGIIPSLSWEFIKDYLHHWTLPFLSLF 204
              W     +++    F     P SG  S    +  + +L   F  D + H  LPF ++ 
Sbjct: 307 AVPWILDNFVINKTIPFTTIPMPYSGLRSPPEVFNELSTLGRIF--DLVSHGFLPFCAVS 364

Query: 205 MVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGL 263
              L   +   R++ +  +  D+I   ++ G+    IL KH  KNA +  VT LA  LG 
Sbjct: 365 YGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIVTSLASSLGT 424

Query: 264 LVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
           L+ G + V+ +F+  G G    Q I+N+D+ ++  + LV     LV   + D+ Y ++DP
Sbjct: 425 LLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYVLLDP 484

Query: 324 RVRI 327
           RV++
Sbjct: 485 RVQL 488


>pir||G81668 peptide ABC transporter, permease protein, probable TC0764
           [imported] - Chlamydia muridarum (strain Nigg)
           >gi|7190789|gb|AAF39567.1| (AE002344) peptide ABC
           transporter, permease protein, putative [Chlamydia
           muridarum]
           Length = 492
           
 Score = 72.2 bits (174), Expect = 8e-12
 Identities = 62/245 (25%), Positives = 118/245 (47%), Gaps = 18/245 (7%)

Query: 97  VAEILKEALPYDLALLFPALVASWFVGNWLGAL--AGKNKKLDNYLMPIFYFLQASPYF- 153
           V+E++K  L   L L    ++  + +    G +    KN+ +D+ L  +F  L + P F 
Sbjct: 247 VSEVIKR-LGSSLVLSLLPMIVVFVLCQVFGMIMAVNKNRWIDHLLNFLFLILFSIPVFV 305

Query: 154 ---WFAILLSYLFTFKLGWFPISGAYSYGIIPS-------LSWEFIKDYLHHWTLPFLSL 203
              W  I+ +++    + +  IS  YS G+  S        S E + D + H  LPF ++
Sbjct: 306 AVPW--IIDNFVLNKTVPFTSISMPYS-GLCSSPEVFKDMTSLEKLIDIVLHSFLPFCAV 362

Query: 204 FMVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLG 262
                   +   R + +  +  D+I  L + G+S+  IL++H  KN+    +T LA  L 
Sbjct: 363 SYGAFAAQSRLSRAVFLEVLGEDHIPALRARGISQYDILIRHVGKNSAATLITSLASSLS 422

Query: 263 LLVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIID 322
            L+ G + V+ +F   G G    Q I+N+D+ ++  + ++  +  L+   + D+ Y ++D
Sbjct: 423 ALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVIMGSVISLIGYLIGDICYVLLD 482

Query: 323 PRVRI 327
           PRV++
Sbjct: 483 PRVQL 487


>dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila pneumoniae J138]
           Length = 493
           
 Score = 72.2 bits (174), Expect = 8e-12
 Identities = 65/244 (26%), Positives = 115/244 (46%), Gaps = 16/244 (6%)

Query: 97  VAEILKEALPYDLALLFPALVASWFVGNWLGALAG--KNKKLDNYLMPIFYFLQASPYF- 153
           ++E++K  L   L L    ++  + +    G +    +N+ +D+ L  IF  L + P F 
Sbjct: 248 ISEVIKR-LRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306

Query: 154 ---WFA--ILLSYLFTFKLGWFPISGAYS----YGIIPSLSWEFIKDYLHHWTLPFLSLF 204
              W     +++    F     P SG  S    +  + +L   F  D + H  LPF ++ 
Sbjct: 307 AVPWILDNFVINKTIPFTTIPMPYSGLRSPPEVFNELSTLGRIF--DLVSHGFLPFCAVS 364

Query: 205 MVQLGGWAIGMRNMIIYEIEADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGL 263
              L   +   R++ +  +  D+I   ++ G+    IL KH  KNA +  VT LA  LG 
Sbjct: 365 YGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIVTSLASSLGT 424

Query: 264 LVAGNVTVQVVFSYPGIGYVLMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDP 323
           L+ G + V+ +F+  G G    Q I+N+D+ ++  + LV     LV   + D+ Y ++DP
Sbjct: 425 LLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLGDICYVLLDP 484

Query: 324 RVRI 327
           RV++
Sbjct: 485 RVQL 488


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.147    0.461 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125535903
Number of Sequences: 2977
Number of extensions: 5463805
Number of successful extensions: 17462
Number of sequences better than 1.0e-10: 133
Number of HSP's better than  0.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 17003
Number of HSP's gapped (non-prelim): 150
length of query: 334
length of database: 189,106,746
effective HSP length: 49
effective length of query: 285
effective length of database: 159,780,883
effective search space: 45537551655
effective search space used: 45537551655
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)