BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0630 (appF-2) DE:OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN
APPF
(322 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 651 0.0
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 640 0.0
pir||D71163 probable oligopeptide transport ATP-binding protein ... 570 e-162
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 379 e-104
pir||G71211 probable oligopeptide transport ATP-binding protein ... 298 8e-80
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 293 3e-78
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 291 6e-78
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 276 3e-73
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 261 6e-69
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 261 1e-68
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 257 9e-68
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 254 1e-66
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 254 1e-66
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 253 2e-66
pir||E72536 probable oligopeptide transport ATP-binding protein ... 253 2e-66
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 250 2e-65
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 249 3e-65
pir||E71130 probable oligopeptide transport ATP-binding protein ... 245 4e-64
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 244 1e-63
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 238 9e-62
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 236 3e-61
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 235 4e-61
pir||A72452 probable peptide transport ATP-binding protein APE22... 235 4e-61
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 235 8e-61
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 232 5e-60
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 230 2e-59
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 228 6e-59
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 228 7e-59
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 227 2e-58
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 226 4e-58
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 225 5e-58
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 224 1e-57
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 224 1e-57
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 223 2e-57
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 223 2e-57
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 223 2e-57
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 223 2e-57
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 223 2e-57
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 222 4e-57
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 222 6e-57
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 222 6e-57
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 221 7e-57
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 220 1e-56
sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 220 2e-56
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 220 2e-56
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 220 2e-56
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 220 2e-56
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 219 3e-56
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 219 3e-56
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 219 4e-56
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 219 5e-56
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 218 6e-56
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 218 6e-56
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 217 1e-55
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 217 1e-55
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 215 7e-55
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 214 9e-55
sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 213 2e-54
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 213 3e-54
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 210 1e-53
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 210 1e-53
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 210 1e-53
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 210 1e-53
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 210 2e-53
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 210 2e-53
pir||QREBOT oligopeptide transport protein oppD - Salmonella typ... 208 7e-53
pir||F71163 probable oligopeptide transport ATP-binding protein ... 208 9e-53
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 207 1e-52
pir||F72617 probable dipeptide transport system ATP-binding prot... 207 1e-52
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 207 2e-52
pir||T45280 probable ABC transporter intracellular ATPase chain ... 206 2e-52
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 206 4e-52
gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport pro... 205 8e-52
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 204 1e-51
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 204 1e-51
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 203 2e-51
pir||T35982 probable peptide transport ATP-binding protein - Str... 203 3e-51
gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 202 4e-51
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 202 5e-51
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 202 5e-51
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 201 9e-51
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 200 2e-50
pir||F71211 probable oligopeptide transport ATP-binding protein ... 200 2e-50
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 200 2e-50
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 200 2e-50
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 198 1e-49
pir||D72720 probable oligopeptide transport ATP-binding protein ... 196 2e-49
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 195 5e-49
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 195 7e-49
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 195 7e-49
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 195 7e-49
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 194 1e-48
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 193 2e-48
pir||A72618 probable oligopeptide transport ATP-binding protein ... 192 5e-48
gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia... 191 8e-48
sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 191 8e-48
pir||C72536 probable oligopeptide transport ATP-binding protein ... 189 3e-47
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 189 3e-47
pir||E83082 probable ATP-binding component of ABC transporter PA... 188 7e-47
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 188 9e-47
pir||F71130 probable oligopeptide transport ATP-binding protein ... 187 2e-46
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 187 2e-46
sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 186 3e-46
sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 185 8e-46
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 183 2e-45
pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei ... 182 4e-45
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 182 4e-45
pir||C72452 probable peptide transport ATP-binding protein APE22... 182 5e-45
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 182 7e-45
emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyo... 181 1e-44
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 181 1e-44
dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elon... 178 8e-44
pir||T35983 probable peptide transport ATP-binding protein - Str... 178 8e-44
pir||H71951 dipeptide transport system dipeptide transport syste... 176 3e-43
pir||C72371 oligopeptide ABC transporter, ATP-binding protein - ... 176 3e-43
sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 175 5e-43
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 175 7e-43
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 175 7e-43
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 175 9e-43
pir||A72282 oligopeptide ABC transporter, ATP-binding protein - ... 175 9e-43
sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 174 1e-42
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 173 3e-42
sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 171 1e-41
emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi] 171 1e-41
pir||F71483 probable dipeptide transport - Chlamydia trachomatis... 171 1e-41
sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 170 2e-41
sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 169 4e-41
gb|AAD48155.1|AF086619_1 (AF086619) ABC transporter homolog [Loo... 169 4e-41
gi|10954941 Probable accB [Agrobacterium tumefaciens] >gi|649829... 169 5e-41
gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae] 166 3e-40
pir||T03431 probable transport protein accB - Agrobacterium tume... 164 1e-39
pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 ... 164 1e-39
pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 ... 162 4e-39
pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 ... 161 8e-39
pir||E70485 ABC transporter - Aquifex aeolicus >gi|2984365|gb|AA... 161 1e-38
gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T... 160 2e-38
gi|10954942 Probable accC [Agrobacterium tumefaciens] >gi|649829... 158 1e-37
pir||F70141 probable oligopeptide transport ATP-binding protein ... 157 2e-37
pir||T03432 probable transport protein accC - Agrobacterium tume... 156 3e-37
emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding prot... 156 4e-37
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 155 6e-37
dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 154 1e-36
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 153 2e-36
sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 153 3e-36
dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus] 152 7e-36
dbj|BAB05796.1| (AP001514) oligopeptide ABC transporter (ATP-bin... 150 3e-35
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 149 5e-35
pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 ... 148 8e-35
pir||F64557 dipeptide transport ATP-binding protein dppF - Helic... 145 5e-34
pir||A71952 dipeptide transport system ATP-binding protein - Hel... 145 5e-34
pir||A82876 oligopeptide transport system permease protein UU560... 144 2e-33
pir||T35941 probable ABC-type transport systsem ATP-binding prot... 140 2e-32
dbj|BAB05519.1| (AP001513) oligopeptide ABC transporter (ATP-bin... 131 1e-29
dbj|BAB04290.1| (AP001509) oligopeptide ABC transporter (ATP-bin... 116 3e-25
emb|CAB59828.1| (AJ012388) hypothetical protein [Lactococcus lac... 115 6e-25
gi|11498288 glutamine ABC transporter, ATP-binding protein (glnQ... 112 5e-24
pir||H72356 amino acid ABC transporter, ATP-binding protein - Th... 110 2e-23
pir||F82170 peptide ABC transporter, ATP-binding protein VC1684 ... 109 3e-23
pir||H82377 ABC transporter, ATP-binding protein VCA1101 [import... 104 1e-21
pir||A72279 sugar ABC transporter, ATP-binding protein - Thermot... 102 4e-21
dbj|BAA97047.1| (AB015765) compensate SapD [Vibrio alginolyticus] 102 4e-21
gi|11498623 ABC transporter, ATP-binding protein [Archaeoglobus ... 102 7e-21
gi|11499064 ABC transporter, ATP-binding protein [Archaeoglobus ... 99 8e-20
sp|P45022|YA78_HAEIN PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BIN... 98 2e-19
pir||S77386 nitrate transport protein D-3 - Synechocystis sp. (s... 98 2e-19
pir||E72378 sugar ABC transporter, ATP-binding protein - Thermot... 97 2e-19
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 96 4e-19
sp|O30506|AOTP_PSEAE ARGININE/ORNITHINE TRANSPORT ATP-BINDING PR... 94 2e-18
pir||S75652 ABC-type transport protein sll1878 - Synechocystis s... 94 3e-18
pir||B75076 daunorubicin resistance ATP-binding protein drra PAB... 92 8e-18
pir||E72757 probable phosphate transport ATP-binding protein pst... 92 1e-17
pir||F71849 amino acid ABC transporter, ATP-binding protein - He... 91 1e-17
pir||G81344 ABC transport system ATP-binding protein Cj0732 [imp... 90 2e-17
emb|CAC11998.1| (AL445065) ABC transporter related protein [Ther... 89 5e-17
pir||D83356 probable ATP-binding component of ABC transporter PA... 89 7e-17
emb|CAC11290.1| (AL445063) probable ATP-binding protein [Thermop... 89 7e-17
gb|AAC04471.1| (AF007800) MtlK [Pseudomonas fluorescens] 89 9e-17
pir||E75108 daunorubicin resistance ATP-binding protein (drra-1)... 89 9e-17
pir||C71197 probable ATP-binding transport protein - Pyrococcus ... 88 1e-16
gb|AAC69845.1| (AF076684) oligopeptide transporter putative ATPa... 88 1e-16
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 88 2e-16
pir||C83353 probable ATP-binding component of ABC maltose/mannit... 88 2e-16
gb|AAD22041.1| (AF118229) ATP-binding cassette protein PstB [Str... 87 2e-16
sp|Q50734|YP64_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 87 3e-16
pir||H72342 ABC transporter, ATP-binding protein - Thermotoga ma... 87 3e-16
pir||C69223 anion permease - Methanobacterium thermoautotrophicu... 87 4e-16
dbj|BAB03338.1| (AB035453) ABC transporter [Staphylococcus aureus] 86 5e-16
pir||T45265 cobalt transport ATP-binding protein O homolog [impo... 86 6e-16
pir||T47012 hypothetical protein [imported] - Yersinia pestis >g... 86 6e-16
pir||C82526 ABC transporter ATP-binding protein XF2695 [imported... 86 6e-16
pir||S75960 nitrate transport protein D-1 - Synechocystis sp. (s... 85 8e-16
gb|AAF99694.1|AF267498_4 (AF267498) ABC transporter OrfX [Strept... 85 1e-15
pir||C72336 ABC transporter, ATP-binding protein - Thermotoga ma... 85 1e-15
pir||H75151 abc transporter, ATP-binding protein PAB0249 - Pyroc... 85 1e-15
gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Myc... 85 1e-15
pir||A82974 probable ATP-binding component of ABC transporter PA... 85 1e-15
gi|11499941 ABC transporter, ATP-binding protein [Archaeoglobus ... 84 2e-15
pir||C72303 ABC transporter, ATP-binding protein - Thermotoga ma... 84 2e-15
gb|AAG18646.1| (AE004970) amino acid ABC transporter, ATP-bindin... 84 2e-15
gb|AAK43169.1| Arabinose ABC transporter, ATP-binding protein [S... 83 3e-15
pir||G69192 ABC transporter (glutamine transport ATP-binding pro... 83 3e-15
pir||B70849 hypothetical protein Rv0073 - Mycobacterium tubercul... 83 3e-15
pir||H71008 probable ATP-binding transport protein - Pyrococcus ... 83 3e-15
pir||E75122 hypothetical protein PAB1845 - Pyrococcus abyssi (st... 83 4e-15
sp|P55604|Y4OS_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 83 5e-15
pir||H75157 daunorubicin resistance ATP-binding protein (drra-2)... 82 7e-15
emb|CAC05880.1| (AL391754) putative ABC transporter ATP-binding ... 82 7e-15
pir||G64435 cobalt transport ATP-binding protein O homolog - Met... 82 9e-15
pir||T35994 probable ABC-type transport system ATP-binding chain... 82 9e-15
pir||E83248 probable ATP-binding component of ABC transporter PA... 82 1e-14
gb|AAK42960.1| ABC transporter, ATP binding protein (glucose) [S... 81 2e-14
gb|AAD51830.1|AF175299_5 (AF175299) ThuK [Sinorhizobium meliloti] 80 3e-14
pir||E69098 phosphate transport system ATP-binding - Methanobact... 80 5e-14
pir||H71241 probable multiple sugar-binding transport ATP-bindin... 79 8e-14
pir||S63613 probable ATP-binding protein cymD - Klebsiella oxyto... 78 1e-13
gb|AAD03804.1| (AF047427) ATPase FbpC [Pasteurella haemolytica] 78 1e-13
pir||A70338 ABC transporter - Aquifex aeolicus >gi|2983088|gb|AA... 78 2e-13
gb|AAD32695.1|AF143949_1 (AF143949) glucose ABC transporter ATPa... 78 2e-13
dbj|BAB04758.1| (AP001510) iron (III) dicitrate transport system... 77 2e-13
pir||G69043 cobalt transport ATP-binding protein O - Methanobact... 77 3e-13
dbj|BAB07632.1| (AP001520) ABC transporter (ATP-binding protein)... 77 3e-13
gb|AAK42084.1| ABC transporter, ATP binding protein. [Sulfolobus... 76 4e-13
dbj|BAB06418.1| (AP001516) ABC transporter (ATP-binding protein)... 76 4e-13
emb|CAB76006.1| (AL157916) putative ABC transporter, ATP-binding... 76 5e-13
gi|11499468 daunorubicin resistance ATP-binding protein (drrA) [... 76 5e-13
gb|AAK42217.1| ABC transporter [Sulfolobus solfataricus] 76 5e-13
pir||G71192 probable cobalt transport ATP-binding protein - Pyro... 76 5e-13
pir||T43920 YfuC protein [imported] - Yersinia enterocolitica >g... 76 7e-13
sp|P54933|SMOK_RHOSH ATP-BINDING TRANSPORT PROTEIN SMOK (POLK) >... 76 7e-13
gb|AAF13757.1|AF117351_14 (AF117351) hypothetical ABC transpoter... 76 7e-13
emb|CAB60755.1| (Y18641) ATP-binding protein [Staphylococcus aur... 75 9e-13
pir||F82303 ABC transporter, ATP-binding protein VC0589 [importe... 75 9e-13
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 651 bits (1660), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM
Sbjct: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY
Sbjct: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA
Sbjct: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL
Sbjct: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV
Sbjct: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
Query: 301 EPKLVKVGRDHYAACHLLGGES 322
EPKLVKVGRDHYAACHLLGGES
Sbjct: 301 EPKLVKVGRDHYAACHLLGGES 322
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 640 bits (1632), Expect = 0.0
Identities = 316/322 (98%), Positives = 320/322 (99%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM
Sbjct: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY
Sbjct: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA
Sbjct: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL
Sbjct: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPP+GCRFYTRCPFAME C +V
Sbjct: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPRGCRFYTRCPFAMEHCPEV 300
Query: 301 EPKLVKVGRDHYAACHLLGGES 322
EPKLVKVG++HYAACHLLGGES
Sbjct: 301 EPKLVKVGKEHYAACHLLGGES 322
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 570 bits (1453), Expect = e-162
Identities = 277/322 (86%), Positives = 302/322 (93%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M LL VRNLR+YY TP G+V+AVDGVSFEV +GEVFG+AGESGCGKSTLVHSLILRKPPM
Sbjct: 1 MILLRVRNLRIYYSTPRGFVKAVDGVSFEVKKGEVFGIAGESGCGKSTLVHSLILRKPPM 60
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+KGG AIFKG+DLM L R+E RKIQY ELSIIPQYAMNALNPTK+IKDIVWDLAREHG
Sbjct: 61 THKGGKAIFKGKDLMKLSREEARKIQYKELSIIPQYAMNALNPTKKIKDIVWDLAREHGM 120
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
D++EVE+LL+ERLSMVKLSP+VA+MYPVELSGGMRQRATMVVSTLLNPDLLIADE+TSA
Sbjct: 121 QDKKEVEKLLKERLSMVKLSPKVAEMYPVELSGGMRQRATMVVSTLLNPDLLIADEVTSA 180
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDVTTQRVVIELLHHFM+EGIVKSIIFVTHDLALLRQIADRVM+MYAGKVVEIG MEEVL
Sbjct: 181 LDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAGKVVEIGSMEEVL 240
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
E+PAHPYTQLLLNSLPRMGVHYKRERL GIPGYPISLLNPP+GCRFYTRCP+AM+ CR+V
Sbjct: 241 ESPAHPYTQLLLNSLPRMGVHYKRERLRGIPGYPISLLNPPEGCRFYTRCPYAMQVCREV 300
Query: 301 EPKLVKVGRDHYAACHLLGGES 322
EP+LV+V HYAACHLLGG S
Sbjct: 301 EPELVEVSPGHYAACHLLGGGS 322
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 379 bits (964), Expect = e-104
Identities = 179/307 (58%), Positives = 242/307 (78%), Gaps = 1/307 (0%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
+LDVR+LR+YYRT GYV+AVDGVSF++ GE+ G+AGESGCGKSTL + LIL KPPM+Y
Sbjct: 8 VLDVRDLRIYYRTLYGYVKAVDGVSFDIKRGEILGIAGESGCGKSTLGNGLILLKPPMKY 67
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
GG AI G+++M+L ELRK++Y ++SIIPQYAM+A+NPTK+IK I+ DL EHG +
Sbjct: 68 MGGEAILDGKNIMALSPKELRKVRYEKISIIPQYAMDAMNPTKKIKQIIDDLLHEHGESF 127
Query: 123 RREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALD 182
R+ ++++ ERL +V L +V +MYP+ELSGGM+QR MV+STL+NPD+LIADEITSALD
Sbjct: 128 ERK-KDVIEERLEIVNLGKKVLNMYPIELSGGMKQRMVMVISTLMNPDVLIADEITSALD 186
Query: 183 VTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLEN 242
V++QR VI++L+ ++ I+ S+ F+THDL++L QIAD+VMV+YAG+V EI PME++++
Sbjct: 187 VSSQRSVIQMLYEMREKEIMGSLAFITHDLSVLYQIADKVMVLYAGRVAEISPMEDIIQE 246
Query: 243 PAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEP 302
P HPYT++LL+SLP++GV Y + +L GIPGYP SLLN GCRF RCP+A E C P
Sbjct: 247 PLHPYTKMLLSSLPKIGVRYSQTKLKGIPGYPPSLLNIGPGCRFRDRCPYAFEKCEQDPP 306
Query: 303 KLVKVGR 309
GR
Sbjct: 307 VFDVDGR 313
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 298 bits (754), Expect = 8e-80
Identities = 153/318 (48%), Positives = 223/318 (70%), Gaps = 5/318 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
+L+V+NL++YY T G V+AVD V+F++ +GEV G+AGESGCGKS++ +L+ + +PP
Sbjct: 8 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 67
Query: 62 YKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GGS GR+++ LP D LR+ I++ ++S+I Q AMNALNP + + + H
Sbjct: 68 IVGGSIKIDGREIVGLPEDVLRREIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHKG 127
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
DR + + + L +V L P + YP ELSGGM+QR + ++ LL PD++IADE T+A
Sbjct: 128 MDREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIAMALLLEPDIVIADEPTTA 187
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDV Q +I L+ +++ + S+IF+THDL++L +I+DRV VMYAGK+VEIGP E++
Sbjct: 188 LDVVVQAQIINLMKR-LKKKLGLSMIFITHDLSILAEISDRVAVMYAGKLVEIGPSEKIY 246
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
PAHPYTQ LL ++PR+ H E+L IPG P +L+NPP GCRF+ RCP+AM+ C++
Sbjct: 247 YEPAHPYTQKLLAAIPRL--HEDVEKLEFIPGSPPNLINPPSGCRFHPRCPYAMDKCKEE 304
Query: 301 EPKLVKVGRDHYAACHLL 318
EPK+V+V +DHYAAC LL
Sbjct: 305 EPKMVEVDKDHYAACWLL 322
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 293 bits (741), Expect = 3e-78
Identities = 150/318 (47%), Positives = 220/318 (69%), Gaps = 5/318 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
+L+V+NL++YY T G V+AVD V+F++ +GEV G+AGESGCGKS++ +L+ + +PP
Sbjct: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
Query: 62 YKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GS GR+++ LP D LRK I++ ++S+I Q AMNALNP + + + H
Sbjct: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
R + + + L +V L P + YP ELSGGM+QR + + +L PD++IADE T+A
Sbjct: 125 MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTA 184
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDV Q +I L+ +++ + S+IF+THDL++L +I+D++ +MYAGK+VEIGP E+V
Sbjct: 185 LDVVVQAQIINLMKR-LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVY 243
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
PAHPYTQ LL ++PR+ H E+L IPG P +LLNPP GCRF+ RCP+AM+ C++
Sbjct: 244 YEPAHPYTQKLLAAIPRL--HEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
Query: 301 EPKLVKVGRDHYAACHLL 318
EPK+V+V +DHYAAC LL
Sbjct: 302 EPKMVEVDKDHYAACWLL 319
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 291 bits (738), Expect = 6e-78
Identities = 156/321 (48%), Positives = 208/321 (64%), Gaps = 7/321 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRK-PPME 61
LL N+R YY+ V+AVDG+SFE+ E EV GV GESGCGK+TL + + + P+
Sbjct: 5 LLKAENVRAYYKLEKVSVKAVDGLSFEILEDEVIGVVGESGCGKTTLSNVIFMNMVKPLT 64
Query: 62 YKGGSAIFKGR----DLMSLPRDEL-RKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
G + +L S+ RDE+ RK E++IIPQ AMNAL PT R++ V LA
Sbjct: 65 LVDGKIFLRVNGEFVELSSMTRDEVKRKFWGKEITIIPQAAMNALMPTIRMEKYVRHLAE 124
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
HG D E+ + R R V L P YP ELSGGMRQRA + ++T+LNP LLIADE
Sbjct: 125 SHGI-DEEELLDKARRRFEEVGLDPLWIKRYPFELSGGMRQRAVIAIATILNPSLLIADE 183
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
TSALDV Q+V++++L ++GIVKSIIF+THD+A +RQIADR+++MYAGK+VE P+
Sbjct: 184 PTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATVRQIADRMIIMYAGKIVEFAPV 243
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
E +LE P HPYTQ L NS+ K+ ++ IPG P +L+NPP GCRF+ RCP AM+
Sbjct: 244 ESLLEKPLHPYTQGLFNSVLTPEPEVKKRGITTIPGAPPNLINPPSGCRFHPRCPHAMDV 303
Query: 297 CRDVEPKLVKVGRDHYAACHL 317
C++ EP L ++ AC L
Sbjct: 304 CKEKEPPLTEIEPGRRVACWL 324
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 276 bits (698), Expect = 3e-73
Identities = 145/331 (43%), Positives = 212/331 (63%), Gaps = 21/331 (6%)
Query: 3 LLDVRNLRVYY--------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
L++ +NL+ YY RT +RAVD VS ++ GE++G+AGESGCGKSTL+ +L+
Sbjct: 4 LVEGKNLKAYYVLEFWGKKRT----IRAVDNVSLKIFSGEIYGIAGESGCGKSTLLKTLL 59
Query: 55 LR-KPPMEYKGGSAIF----KGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKD 109
+PP+ GG + K +++SL +E R++++ +S IPQ +M+ LNP KRI+D
Sbjct: 60 ANLEPPLRLFGGELNYWLDSKPVNVVSLKEEERRRLKWRFISYIPQGSMHVLNPVKRIRD 119
Query: 110 IVWDLAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNP 169
++ + H + E+ E L + L RV DM+P +LSGGMRQR T+ ++TLL P
Sbjct: 120 TFMEILKSHVRRQKETFLEMAIEHLKALGLPSRVLDMFPHQLSGGMRQRVTIALATLLKP 179
Query: 170 DLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
+++ADE T+ALDV QR VI+L+ +E + +I+ VTHD+ + Q+ R+ +MYAGK
Sbjct: 180 RIILADEPTTALDVVAQRAVIQLIKKIQKE-LKNTIVLVTHDMGIHAQVTTRMAIMYAGK 238
Query: 230 VVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTR 289
+VE GP E+ + P HPYT+ L+ SLPR+G RE GIPG P SL++PP GCRF+ R
Sbjct: 239 IVEEGPTLEIFKEPLHPYTRYLIQSLPRVGDKQLRE---GIPGSPPSLVSPPSGCRFHPR 295
Query: 290 CPFAMEDCRDVEPKLVKVGRDHYAACHLLGG 320
CP A + C + EP ++V H AAC LLGG
Sbjct: 296 CPHATQRCEEEEPVFLEVNPGHRAACFLLGG 326
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 261 bits (661), Expect = 6e-69
Identities = 138/320 (43%), Positives = 202/320 (63%), Gaps = 5/320 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
L+ + NL + + T G V+A+DGVSF++ +GE+ + GE+GCGKS +++ P
Sbjct: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAI 65
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
G I+KGR+L+ LP E+RKI+ E+++I Q + +LNP I+D + ++ + H
Sbjct: 66 VKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPV 125
Query: 123 RREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+ + + + L MVK+ + YP ELSGGMRQR + + P LLIADE T+A
Sbjct: 126 VGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTA 185
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDVT Q ++ L+ ++E SI+ +TH+ ++ ++ADRV+VMYAG+VVEI P+EE+
Sbjct: 186 LDVTIQAQIMNLMLE-LREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIF 244
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
+NP HPYTQ LL +LPR H L IPG +LLNPPKGCRF+ RC A E C
Sbjct: 245 DNPLHPYTQGLLRALPR--GHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKE 302
Query: 301 EPKLVKVGRDHYAACHLLGG 320
+PKL++V ++HY ACHL GG
Sbjct: 303 KPKLIEVEKEHYVACHLYGG 322
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 261 bits (659), Expect = 1e-68
Identities = 142/323 (43%), Positives = 198/323 (60%), Gaps = 13/323 (4%)
Query: 8 NLRVYYRTPVG----YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR-KPPMEY 62
NLR YY G +RAVD VS E EV+G+AGESGCGKSTL+ L KPP++
Sbjct: 9 NLRAYYFIKSGDKTTSIRAVDNVSLHFFENEVYGIAGESGCGKSTLLKVLFGEIKPPLKL 68
Query: 63 KGGSAIFK--GRD--LMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH 118
G +FK G + + S+ D+L+KI++ +S +PQ +M+ LNP ++I+ I D+ EH
Sbjct: 69 VDGEVVFKLDGEEYRINSMSLDQLKKIRWKYVSYVPQGSMSVLNPVRKIRRIFLDVIEEH 128
Query: 119 GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
R E + + L RV D YP +LSGGMRQR T+ ++T+LNP ++ ADE T
Sbjct: 129 TSMSREEAFSRIESYFEALGLPVRVLDSYPHQLSGGMRQRVTIALATVLNPKVIFADEPT 188
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDV QR VI+LL +E +++ VTHD+ + +A R+ VMYAG+++E E
Sbjct: 189 TALDVVVQRGVIQLLKKIHKEQ-KNTLVIVTHDMGVHAHLATRIGVMYAGRLIEEAETHE 247
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ +NP HPYT+ L+NSLPR G R R G PG P SL N P GC F+ RCP A + C
Sbjct: 248 IFKNPLHPYTRFLINSLPRFG---DRSRKEGTPGSPPSLANLPSGCPFHPRCPIADQICM 304
Query: 299 DVEPKLVKVGRDHYAACHLLGGE 321
++EP L++V R+H AC +G E
Sbjct: 305 EMEPDLIEVARNHKVACWKVGVE 327
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 257 bits (651), Expect = 9e-68
Identities = 136/327 (41%), Positives = 208/327 (63%), Gaps = 13/327 (3%)
Query: 3 LLDVRNLRVYYRTPVG----YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRK 57
L+ +NL+ YY + V+AVD VS ++ E++G+AGESGCGKSTL+ +L+ L
Sbjct: 4 LISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLALLD 63
Query: 58 PPMEYKGGSAIF--KGR--DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
PP+ G ++ +GR ++ L + +RK+++S +S IPQ +M+ LNP KR++D +
Sbjct: 64 PPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDTFIE 123
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
+ H +E +L + L + L RV +M+P +LSGGMRQR T+ ++T+L P ++
Sbjct: 124 ILSSHVKKQTKEFLDLAVQHLKDLGLPERVLNMFPHQLSGGMRQRVTIALATVLKPRVIF 183
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE T+ALDV QR V++L+ +Q + +++ VTHD+ + QI R+ +MYAGK+VE
Sbjct: 184 ADEPTTALDVVAQRAVMQLIRK-IQNDLKNTVVLVTHDMGVHAQITTRMAIMYAGKIVEE 242
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFA 293
GP E+ +NP HPYT+ L+ SLP +G ++ SGIPG P SL+ PP GCRF+ RCP A
Sbjct: 243 GPTLEIFKNPLHPYTRYLIQSLPAIG---DKKLRSGIPGSPPSLVAPPPGCRFHPRCPHA 299
Query: 294 MEDCRDVEPKLVKVGRDHYAACHLLGG 320
+ CR+ EP L ++ H AC L+ G
Sbjct: 300 SQRCREEEPLLKEIKPGHKVACFLMEG 326
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 254 bits (641), Expect = 1e-66
Identities = 135/317 (42%), Positives = 204/317 (63%), Gaps = 9/317 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKP-PME 61
LL+VRNL+VY+ T G V+AVDGV+ + +GE+ G+AGESG GKST+ ++++ P P +
Sbjct: 6 LLEVRNLKVYFYTKRGIVKAVDGVNLYLDKGEIVGLAGESGSGKSTIGYAIMRLVPFPGK 65
Query: 62 YKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+ G +FKG +++ L + RK ++ +++++ Q +M+ P +IKD + ++ R HG+
Sbjct: 66 IESGEILFKGENILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIKDQIIEVLRIHGW 125
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+ EE ++E MV + P++A+ YP ELSGG +QRA + ++ LNP++LIADE T+A
Sbjct: 126 --NGDYEERIKELFKMVNMDPQLAEKYPHELSGGQKQRAFIAMALALNPEVLIADEPTTA 183
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDV Q ++ LL +E + SIIF+THDLALL +I+DR +YAGKV+E GP E +
Sbjct: 184 LDVMVQEHILNLLKKLRKE-LNLSIIFITHDLALLSEISDRDYTLYAGKVMESGPSEVIF 242
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
+ P HPYT LL+ S+ + ++ + GIPG L +PP GCRF TRCPFA + C
Sbjct: 243 KKPRHPYTSLLIESIATL----DKDIIKGIPGAMPDLSSPPLGCRFNTRCPFARDICFKE 298
Query: 301 EPKLVKVGRDHYAACHL 317
EPK+ AC L
Sbjct: 299 EPKMKTFSDGDEVACWL 315
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 254 bits (641), Expect = 1e-66
Identities = 139/321 (43%), Positives = 198/321 (61%), Gaps = 6/321 (1%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPM 60
+LL V L Y G+V V V+FEV E+F +AGESGCGKSTL ++ L K P
Sbjct: 7 SLLKVNELTAGYFNQDGFVIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYGLLKYPG 66
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G K +D++S+ ++ELRK++ E +PQ+AM+AL+P +I D + A HG
Sbjct: 67 VVLRGHVYLKDKDILSITQEELRKLRMKEFVYVPQFAMDALDPVAKIGDQMMRAAVSHG- 125
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+ E +L++E+L +V L V +MYP ELSGGMRQR + S LLNP L+I DE T+
Sbjct: 126 VNVEEARKLIKEKLELVDLPYNVVNMYPHELSGGMRQRVVIATSILLNPSLIILDEPTTG 185
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDV Q +++ L +Q + S++ ++HD+++L I+DRV +MYAG++VEIG EE++
Sbjct: 186 LDVIVQYEILKDLKR-IQRQLGVSLVIISHDISMLLMISDRVGIMYAGEIVEIGSKEEII 244
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGY-PISLLNPPKGCRFYTRCPFAMEDCRD 299
+ P+HPYT LL++SLP + +RE+L IPG P+ L P CRFY RCPF ME C
Sbjct: 245 KRPSHPYTYLLISSLP--SLVKRREKLLSIPGNPPLMLSKVPNSCRFYDRCPFKMEKCST 302
Query: 300 VEPKLVKVGRDHYAACHLLGG 320
+ P L + H A C L G
Sbjct: 303 LNPALGDIMDGHKARCFLQKG 323
Score = 122 bits (302), Expect = 8e-27
Identities = 80/244 (32%), Positives = 133/244 (53%), Gaps = 17/244 (6%)
Query: 20 VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSLPR 79
+ AV+ VSFE+ +G + + G SG GKST+ L ++ G I G+D+
Sbjct: 378 INAVNDVSFELKKGTITALVGGSGHGKSTIAKILA---GMIQQTSGKIILLGKDVSEY-- 432
Query: 80 DELRKIQYSE-LSIIPQYAMNALNPTKRIKDIVWDLAR----EHGYADRREVEELLRERL 134
+ Y E + +I Q ++L+P ++ W + R +++ ++ + E L
Sbjct: 433 GVRNSMWYKENVQMIFQDPYSSLDPRHTVR---WHVERPLLIHKKVSNKDQLLPKIIEVL 489
Query: 135 SMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIEL 192
V L P + YP ELSGG RQR + +T + P +L+ADE S LD + + ++ L
Sbjct: 490 KNVGLKPPEKYLYKYPHELSGGERQRVAIARATAVEPKVLVADEPVSMLDASLRAGILNL 549
Query: 193 LHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLL 252
+ F + GI SI+++THD+A + IAD +MV+Y G++VE G EV+ NP+H YT+ L+
Sbjct: 550 IKKFKKNGI--SILYITHDIATVNYIADEIMVIYKGRIVEKGNTYEVISNPSHEYTKRLI 607
Query: 253 NSLP 256
++P
Sbjct: 608 EAVP 611
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 253 bits (640), Expect = 2e-66
Identities = 145/328 (44%), Positives = 203/328 (61%), Gaps = 12/328 (3%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M LL+V NL+V + G V+AVDG+S+++ +GE G+ GESG GKS V SL+ L
Sbjct: 2 MELLNVNNLKVEFHRVEGIVKAVDGISYKLNKGESLGIVGESGSGKSVSVLSLLRLINRN 61
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-----KDIVWDL 114
G AIF G+DL+ L ++ELR I+ ++SII Q M +LNP R+ + I+W
Sbjct: 62 GRIVDGEAIFLGKDLLKLNKEELRNIRGKDISIIFQNPMTSLNPIIRVGIQVMEPIIWHR 121
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
++ A R +E L ER+ + + SP+ YP + SGGMRQR + ++ +P LLIA
Sbjct: 122 LMKNEEARERAIE--LLERVGIPE-SPKRFLNYPFQFSGGMRQRVMIAMALACHPKLLIA 178
Query: 175 DEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
DE T+ALDVT Q ++ELL +E S+IF+THDL++ DR++ MYAGK+VE
Sbjct: 179 DEPTTALDVTIQAQIMELLQELKEE-YGMSVIFITHDLSVATNFCDRIITMYAGKIVEEA 237
Query: 235 PMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAM 294
P+EE+L+ P HPYT+ LLNS +G K +L IPG P + P GC+F+ RC FAM
Sbjct: 238 PVEEILKTPLHPYTKGLLNSTLEIGSRGK--KLVPIPGNPPNPTKHPSGCKFHPRCSFAM 295
Query: 295 EDCRDVEPKLVKVGRDHYAACHLLGGES 322
E C+ EP LV + +H ACHL+ GES
Sbjct: 296 EICQREEPPLVNISENHRVACHLIKGES 323
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 253 bits (639), Expect = 2e-66
Identities = 139/320 (43%), Positives = 195/320 (60%), Gaps = 5/320 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
LL V +L+ Y+ T G V+AVDGVSF + GEV G+AGESG GKSTL S++ L PP
Sbjct: 5 LLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGR 64
Query: 62 YKGGSAIFKGRDLMSLPRDELR-KIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GG + G D+ S+ ELR K+++ ++S++ Q AMN L P + + ++ + H
Sbjct: 65 IVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRG 124
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
R E + + E L V L +AD YP ELSGG +QR + ++ L PD++IADE T+A
Sbjct: 125 VGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTA 184
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDV Q ++ LL E + SII +THDL+++ ++A+ VM+MY GK+ E GP + V
Sbjct: 185 LDVVVQAQILNLLKKLAWEKNL-SIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVF 243
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
P HPYTQ LL ++P++ +RL+ IPG P L NPP GCRF+ RCP A + C
Sbjct: 244 TKPQHPYTQALLKAIPKL--RGPIDRLAYIPGSPPDLRNPPPGCRFHPRCPKAFDRCSRE 301
Query: 301 EPKLVKVGRDHYAACHLLGG 320
EP L +VG H +AC L G
Sbjct: 302 EPPLFRVGDGHLSACWLNEG 321
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 250 bits (631), Expect = 2e-65
Identities = 136/320 (42%), Positives = 195/320 (60%), Gaps = 8/320 (2%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M LLD+ NL +RT G VRAVD VS V +GE + GESGCGKSTL HS++ L P
Sbjct: 1 MMLLDIENLTTIFRTRRGVVRAVDNVSMSVEKGEFISIVGESGCGKSTLAHSVMRLIDYP 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
E GG IF G DL+SL +E+R+I+ S++ ++ Q M +L+P ++I D + + EH
Sbjct: 61 GEISGGKIIFDGVDLLSLGDEEMREIRGSKIGMVFQDPMTSLDPLEKIGDQISETIMEHM 120
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
++E ++ RE L V L P D YP +LSGG RQR + ++ LNP LLIADE T+
Sbjct: 121 DVTKKEAWQMAREMLEKVGLQPERVDSYPHQLSGGQRQRVMIAMAISLNPKLLIADEPTT 180
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALDV Q +++LL +EG ++++ +THD AL + +DR+ VMYAG +VE+G E++
Sbjct: 181 ALDVIVQEKIMDLLEDMKREG--RAVMLITHDFALAAERSDRIAVMYAGWLVELGKAEKL 238
Query: 240 LENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRD 299
P HPYT+ L+ S+P + + + + +PG+P L+NPP+GCRF RC A + C
Sbjct: 239 TNEPLHPYTKGLIQSVPDV---WMDKEIKPLPGFPPDLINPPEGCRFRPRCSEASKRCMK 295
Query: 300 VEPKLVKVGRDHYAACHLLG 319
P+ GR C L G
Sbjct: 296 EPPEFEVDGR--VVKCWLYG 313
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 249 bits (629), Expect = 3e-65
Identities = 127/316 (40%), Positives = 198/316 (62%), Gaps = 4/316 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
L+ +RNL V Y T G VRA + VSF++ GEVFG+AGESGCGKST+ SL+ L KPP
Sbjct: 5 LISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAF 64
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
GG IF G D++ + ++ ++ E+S++ Q AMNALNP +++ D+ H
Sbjct: 65 ITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRHTNM 124
Query: 122 DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSAL 181
R + + L +V + P + YP + SGGMRQR + ++ LNP ++I DE T+AL
Sbjct: 125 TREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEPTTAL 184
Query: 182 DVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLE 241
DV QR +++ + + ++E SI+F+THDL+L+ + +DR+ +MY+G+++E+ P +++LE
Sbjct: 185 DVVVQREILQKI-YALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQILE 243
Query: 242 NPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVE 301
P HPYT+ L +S P + + +L+GIPG P++LL+ P+GCRF RC E C V
Sbjct: 244 TPYHPYTKGLGSSFPPL--TGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVP 301
Query: 302 PKLVKVGRDHYAACHL 317
L ++ ++ CHL
Sbjct: 302 TVLRQIEHGRFSNCHL 317
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 245 bits (620), Expect = 4e-64
Identities = 127/318 (39%), Positives = 202/318 (62%), Gaps = 8/318 (2%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP-M 60
++L++ L V Y+T G V A+ VSF V +G + G+ GESG GKSTL H+++ P
Sbjct: 3 SILEIEGLTVKYKTRYGTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPENA 62
Query: 61 EYKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLARE-H 118
+ G +F+G DL+ + + R+ ++ ++S+I Q +MNA +P RI+D + D+AR+
Sbjct: 63 RIESGKIMFEGSDLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQDQLLDVARKCF 122
Query: 119 GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
R E+ E+++E+L + + V YP ELSGG RQR + ++ L +P+++IADE T
Sbjct: 123 PNKSRNELLEIIKEKLRIANIDESVLKKYPHELSGGQRQRVAIGMALLADPEIVIADEPT 182
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ LDV TQ ++ L +Q+ + +++ +THD++++ ++ V+V+YAGKV+E G ++
Sbjct: 183 TGLDVVTQYQILNRLKE-IQKDLGITLLLITHDVSVVAALSTDVLVLYAGKVLEYGDIKR 241
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
V +N HPYT LLL S P MG +E+L IPG P L NPP GC F+ RCP+A + CR
Sbjct: 242 VFKNSHHPYTYLLLRSYPEMG----KEKLYEIPGSPPDLRNPPSGCVFHPRCPYATDLCR 297
Query: 299 DVEPKLVKVGRDHYAACH 316
EPKLV++ H++ACH
Sbjct: 298 KEEPKLVEIEEGHFSACH 315
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 244 bits (616), Expect = 1e-63
Identities = 132/328 (40%), Positives = 197/328 (59%), Gaps = 14/328 (4%)
Query: 1 MALLDVRNLRVYYRTPV----GYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
M +L NL+ YY + V+AVD V+ + E E++G+AGESGCGKSTL+ +L
Sbjct: 1 MEVLRTENLKSYYILDIFGKKRVVKAVDDVNISIMENEIYGIAGESGCGKSTLLRALFAA 60
Query: 57 -KPPMEYKGGSAIFKGR----DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIV 111
+PP GG +++ D+ SL +E R++++S +S +PQ +M+ LNP +IK+
Sbjct: 61 IEPPQRIVGGKVLYRENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNPVVKIKETF 120
Query: 112 WDLAREHGYAD-RREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPD 170
D H + E E+ +E + + L + + YP +LSGGMRQR T+ ++T+L+P
Sbjct: 121 KDFIESHTTGKTKEEAYEMAKEHIKELGLPIEILNAYPHQLSGGMRQRVTIALATVLSPK 180
Query: 171 LLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
++IADE T+ALDV TQR V++LL +Q +II VTHD+ + + DR+ +MYAGK+
Sbjct: 181 VIIADEPTTALDVVTQRGVVQLLKE-IQSSRQNTIILVTHDMGVHANVTDRIAIMYAGKI 239
Query: 231 VEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRC 290
+E G EE+ ENP HPYT+ L+ SLP+ G +RE PG P SL + P GC F+ RC
Sbjct: 240 IEEGKTEEIFENPMHPYTKYLIYSLPKFGDKGRRE---SAPGSPPSLADLPPGCSFHPRC 296
Query: 291 PFAMEDCRDVEPKLVKVGRDHYAACHLL 318
P A + C+ P L + H AC L+
Sbjct: 297 PHAFDRCKKEVPPLKEYLPGHRVACWLV 324
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 238 bits (600), Expect = 9e-62
Identities = 134/324 (41%), Positives = 194/324 (59%), Gaps = 14/324 (4%)
Query: 3 LLDVRNLRVYY-------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLIL 55
+L++R+++ Y+ + VG V+AVDGVSF + +GE G+ GESGCGKST ++I
Sbjct: 9 ILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIR 68
Query: 56 RKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
P E G +FKG+D+ +L ++LRK + ++ Q +LNP K ++ I+ +
Sbjct: 69 LYKPTE---GQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPF 125
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
H RE E + E L+ V L P A YP E SGG RQR + + LNP+L+IAD
Sbjct: 126 NTHNMYTMRERNEKVEELLARVGLHPSFAGRYPHEFSGGQRQRIGIARALTLNPELIIAD 185
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E SALDV+ Q VI L+ +QE + +F++HDL+++R I+DRV VMY GK++E+
Sbjct: 186 EPVSALDVSIQPQVINLMEE-LQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTG 244
Query: 236 MEEVLENPAHPYTQLLLNSLP--RMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFA 293
E+ +NP HPYTQ LL+S+P R KRER+ + G S NPPKGC F+TRCP A
Sbjct: 245 KHELYDNPLHPYTQALLSSVPVTRKRGSVKRERIV-LKGELPSPANPPKGCVFHTRCPVA 303
Query: 294 MEDCRDVEPKLVKVGRDHYAACHL 317
C++ P+ + H+ ACHL
Sbjct: 304 KPICKEQIPEFKEAAPSHFVACHL 327
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 236 bits (595), Expect = 3e-61
Identities = 140/327 (42%), Positives = 195/327 (58%), Gaps = 11/327 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
LL ++NLR Y+ T G V+AVDGVSFE+ EG GV GESGCGKS S+I L
Sbjct: 4 LLQIKNLRTYFFTDEGVVKAVDGVSFEIEEGRTLGVVGESGCGKSVTARSIIKLLSTAGR 63
Query: 62 YKGGSAIFK--GR--DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLARE 117
G ++ G+ DL+ ++E+RK++ +++I Q M A +P I D + +
Sbjct: 64 IVSGEILYNMDGQMVDLVKFSKEEIRKVRGRHIAMIFQEPMAAFSPVYTIGDQITEGMIY 123
Query: 118 HGYADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
H ++E E E L V + ++ D YP E SGGMRQRA + ++ NP LLIAD
Sbjct: 124 HFGITKQEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIAMALSCNPRLLIAD 183
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E T+ALDVT Q V++LL QE +I+ +TH++ ++ ++AD V+VMY G+VVE P
Sbjct: 184 EPTTALDVTIQAQVLDLLKDLQQE-YKMAIMMITHNMGVVAEMADHVVVMYLGRVVESAP 242
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAME 295
+EE+ NP HPYT LLL S+P +G + ERL I G N PKGCRF+ RCP+ M+
Sbjct: 243 VEELFYNPKHPYTSLLLRSIPVVG--KRVERLEVIEGDVPDPRNMPKGCRFHPRCPYMMK 300
Query: 296 D-CRDVEPKLVKVGRDHYAACHLLGGE 321
C + EP V+VG +H +C L GGE
Sbjct: 301 GICDEREPVEVEVGPEHRVSCFLYGGE 327
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 235 bits (594), Expect = 4e-61
Identities = 127/324 (39%), Positives = 190/324 (58%), Gaps = 16/324 (4%)
Query: 6 VRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGG 65
+RN+ V ++T G V A+ VSF++ +G G+ GESG GKSTL S++ P G
Sbjct: 1 MRNVSVEFKTYSGIVHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSLLPENAMMRG 60
Query: 66 SAIFKGRDLMS--------------LPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIV 111
S KG + +S + D LR I++ +S++ Q AMN+ NP I+ +
Sbjct: 61 SIYLKGTEYISDVIINNAKKKKARKILEDNLRNIRWKNISMVFQGAMNSFNPVYTIRRQM 120
Query: 112 WDLAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDL 171
+++ + H D E+E+ + E L M L+ V DMYP ELSGGM+QRA + ++ L+PD+
Sbjct: 121 FEVFKIHTTLDNDEIEKKVEEALRMAGLNISVLDMYPHELSGGMKQRAVIAMALSLDPDI 180
Query: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
+IADE T+ LDV TQ +I L + G +KS+I ++HDL ++ Q+AD VMV+YAGKV
Sbjct: 181 VIADEPTTGLDVITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGKVF 240
Query: 232 EIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
E G + +N A+PYT L+ S P + + + GIPG + KGC+F RC
Sbjct: 241 EYGEKSRIFQNTANPYTYKLIGSYP--SIRNAKRYVEGIPGSLPDPMKIGKGCKFADRCY 298
Query: 292 FAMEDCRDVEPKLVKVGRDHYAAC 315
A + CR+ EP+L+KV +HY+AC
Sbjct: 299 MARDVCREEEPELIKVEDNHYSAC 322
Score = 167 bits (419), Expect = 1e-40
Identities = 107/319 (33%), Positives = 174/319 (54%), Gaps = 29/319 (9%)
Query: 19 YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYK-------GGSAIFKG 71
+VRAVD ++F + +GE+ G+ GESG GK+TL +L+ P K G I
Sbjct: 376 FVRAVDDITFAIRKGEILGIVGESGSGKTTLGKTLLGLYSPTAGKITYSFSNGDVEITPT 435
Query: 72 RDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD--LAREH--GYADRREVE 127
L R +RK E +I Q ++LNP + DIV + +AR + G ++ ++
Sbjct: 436 TSESELMRSSIRK----ETQMIFQDPYDSLNPKLTVYDIVAEPIIARRYHKGNKEKDDIY 491
Query: 128 ELLRERLSMVKLSPRVADM---------YPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ E L++VK++ A + YP ELSGG RQR + +LN + +IADE T
Sbjct: 492 KNPLEILNLVKIALAKASLKPVENYLFRYPHELSGGERQRVATARALVLNSEFIIADEPT 551
Query: 179 SALDVTTQRVVIELLHHFM-QEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
S LDV+ + + ++ +EGI ++++++HD+A ++D+++VMY GK VE+G +
Sbjct: 552 SMLDVSIRASFMNMMKEIRSKEGI--TMVYISHDIASTYYMSDKILVMYLGKAVEMGSAD 609
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
++ P HPYT+ L+ ++P + ++ I G + +N PKGCRFY RC + + C
Sbjct: 610 AIINEPLHPYTKALIKAIPTPFSDWDPSKID-IIGEIGNAINVPKGCRFYNRCIYRQDIC 668
Query: 298 RDVEPKLVKVGRDHYAACH 316
+D P VK DH+ CH
Sbjct: 669 KD-NPPTVKGAEDHWYLCH 686
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 235 bits (594), Expect = 4e-61
Identities = 129/315 (40%), Positives = 190/315 (59%), Gaps = 8/315 (2%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
MA+LD+++L+V+Y T G VRAVDGVS V +GE + GESG GKSTL S+ L PP
Sbjct: 5 MAVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPP 64
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
GG ++ G DL+SL +ELR+ + E+ ++ Q L+P + + + + EHG
Sbjct: 65 GRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHG 124
Query: 120 YADR-REVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
A E E + + L +V + A +YP +LSGG RQR + + L P +LIADE T
Sbjct: 125 LASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPT 184
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDV Q +++L+ +E + +++ VTHD+ L + +DR+ VMYAG++VEIGP E+
Sbjct: 185 TALDVVVQAKIMDLMKKLQEERGL-TVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAED 243
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
V+ NP HPYT++L+ S+P ++ + IPG P L NPP GCRF+ RCP C
Sbjct: 244 VVSNPIHPYTEMLIKSVPDP---WEDREVKPIPGSPPDLRNPPPGCRFHPRCPLRQPLCT 300
Query: 299 DVEP--KLVKVGRDH 311
+ P ++V GR H
Sbjct: 301 NTRPSLRMVDGGRGH 315
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 235 bits (592), Expect = 8e-61
Identities = 127/316 (40%), Positives = 189/316 (59%), Gaps = 6/316 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
LL+V+NL ++ G V+AV+ VSF + EV G+ GE+G GKS V S++ L KPP +
Sbjct: 7 LLEVKNLSTWFYMEEGIVKAVNDVSFSLNSNEVLGIVGETGSGKSVTVKSIMRLIKPPGK 66
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G I+KG+D++ +P E+ +I+ E+++I Q M +LNP I D + + R H
Sbjct: 67 IVSGEIIYKGQDILKIPEKEMHRIRGKEIAMIFQDPMMSLNPLYTIGDQLMETIRYHLGY 126
Query: 122 DRREVEELLRERLSMVKLSPRVADM--YPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
D+R E L +V + M YP E SGGMRQR + ++ NP +LIADE T+
Sbjct: 127 DKRRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSCNPSVLIADEPTT 186
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALDVT Q ++EL+ +E +IF+THDL ++ +ADR+MVMY G+ VEIG +++
Sbjct: 187 ALDVTIQAQILELMKELQKE-FKTGLIFITHDLGVIASMADRIMVMYGGRQVEIGTSDQI 245
Query: 240 LENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRD 299
+P HPYT++LL S+PR V + E+L IPG P +++ P C F RCP +E C
Sbjct: 246 FYSPRHPYTKMLLRSVPR--VDKRLEKLESIPGQPPRMVDIPPVCPFLPRCPRRVERCLK 303
Query: 300 VEPKLVKVGRDHYAAC 315
P+L ++ +HY C
Sbjct: 304 ELPELSEIEENHYVRC 319
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 232 bits (585), Expect = 5e-60
Identities = 134/323 (41%), Positives = 200/323 (61%), Gaps = 15/323 (4%)
Query: 3 LLDVRNLRVYYRTPVG-YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR--KPP 59
+L+V NL V Y ++AV+ VSF V +GE+ G+ GESG GK+TL+ S ILR +PP
Sbjct: 45 ILEVHNLNVIYDEGNSRIIKAVNDVSFGVEKGEILGIIGESGSGKTTLI-SAILRAIRPP 103
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
+ G IF G D+ S+ DE RK+ + ++S +PQ + NALNP I +I + A HG
Sbjct: 104 GKIISGKVIFNGMDIFSMTIDEFRKLLWKDISYVPQASQNALNPVLPISEIFYHEAISHG 163
Query: 120 YADRREVEELLRERLSMVKLSP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
AD++ V E E L +V L P RV MYP +LSGGM+QR + +S LLNP L++ DE T
Sbjct: 164 EADKKRVIERASELLKLVGLDPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLILMDEPT 223
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
SALD+ Q ++++L+ + QE V +I++VTHD+ + QIA+R++VMY G V+E G EE
Sbjct: 224 SALDMLNQELLLKLIKNINQEMGV-TIVYVTHDILNIAQIANRLLVMYKGYVMEEGKTEE 282
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPIS--LLNPPKGCRFYTRCPFAMED 296
++++P +PYT LL++S+P + K + P+ L++ KGC F RC A
Sbjct: 283 IIKSPLNPYTSLLVSSIPSLKGEVK------VINVPLDEPLVSKEKGCPFLARCSKAFGR 336
Query: 297 CRDVEPKLVKVGRDHYAACHLLG 319
C++ P+ +++ D CHL G
Sbjct: 337 CKEELPE-IRLVYDRKVRCHLYG 358
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 230 bits (580), Expect = 2e-59
Identities = 131/320 (40%), Positives = 194/320 (59%), Gaps = 7/320 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
LL+V++L+V + T G V+AV GV+F++ +GE + GESG GKS +L ++ PP
Sbjct: 4 LLEVKDLQVSFDTHAGEVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPNPPG 63
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
K G +F+GRDL L E+++++ ++++I Q M +LNPT I + + + +H
Sbjct: 64 RIKNGEIVFEGRDLTKLTEKEMQQVRGKDIAMIFQDPMTSLNPTMTIGNQIMEGLIKHQG 123
Query: 121 ADRREVEELLRERLSMVKLSPRVADM--YPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ + ++ E + +V + A + YP + SGGMRQR + ++ NP LLIADE T
Sbjct: 124 MSKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLLIADEPT 183
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++EL+ Q+ +IIF+THDL ++ +ADRV VMYAGKVVEIG ++E
Sbjct: 184 TALDVTIQAQILELMKDIQQK-TEAAIIFITHDLGVVANVADRVAVMYAGKVVEIGTVDE 242
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ NP HPYT L+ S+P + E L IPG P LL PPKG F R P A++
Sbjct: 243 IFYNPKHPYTWGLIASMP--SLDGSEEELYAIPGTPPDLLKPPKGDAFAPRNPQALKIDF 300
Query: 299 DVEPKLVKVGRDHYAACHLL 318
+++P L KV HYAA LL
Sbjct: 301 EMDPPLFKVSDTHYAATWLL 320
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 228 bits (576), Expect = 6e-59
Identities = 125/330 (37%), Positives = 194/330 (57%), Gaps = 20/330 (6%)
Query: 1 MALLDVRNLRVYY-----------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTL 49
MAL++V+NL+ Y+ R P +V+AVDGV+F++ EG+ G+ GESG GK+T
Sbjct: 1 MALIEVQNLKKYFPVKQGPIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTT 60
Query: 50 VHSLILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKD 109
++ + P + G IF GRD+ L ++E+RK++ E+ II Q M +LNP R+
Sbjct: 61 GRVILRLEEPTD---GKIIFDGRDITKLSKEEMRKLR-KEMQIIFQDPMASLNPYMRVGK 116
Query: 110 IVWDLAREHGYADRREVEELLRERLSMVKLSPR--VADMYPVELSGGMRQRATMVVSTLL 167
+ HG DR +E++ E L V L P + YP ELSGG RQR + + +L
Sbjct: 117 AIEHALEIHGIGDRSSRKEMVLEMLRRVNLEPAEDIYRRYPRELSGGQRQRVVIARALIL 176
Query: 168 NPDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYA 227
P L++ADE + LDV+ + ++ LL +E + +++F+THDLA + + D + VMY
Sbjct: 177 KPRLVVADEAVAMLDVSVRSQLLRLLQELRKEFNL-TMLFITHDLATTKYVCDEIAVMYL 235
Query: 228 GKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFY 287
GK+VEIG E++ NP HPYTQ L++++P + K++ + G + ++ P GCRF+
Sbjct: 236 GKIVEIGDFEDIYLNPKHPYTQALISAVPEPSLKKKKKFIP--EGETPNPIDVPSGCRFH 293
Query: 288 TRCPFAMEDCRDVEPKLVKVGRDHYAACHL 317
RCP+ M+ C EP+L V +H ACHL
Sbjct: 294 PRCPYRMDICMKEEPQLKAVEENHKVACHL 323
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 228 bits (575), Expect = 7e-59
Identities = 127/326 (38%), Positives = 203/326 (61%), Gaps = 16/326 (4%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
+L VR+L V++ T G V+A++ VSF+V +GE F + GE+GCGKS ++ L + P
Sbjct: 8 ILQVRDLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
Query: 62 YKGGSAIFKGRD-----LMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
GG ++ D L+ L +E+RKI+ +E++ I Q ++L+P + + +
Sbjct: 68 IVGGQVLYYREDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHSSLDPLYTVGYQIAEAME 127
Query: 117 EHGYADRREVEELLRERLSMVK--LSP---RVADMYPVELSGGMRQRATMVVSTLLNPDL 171
HG + ++E +++ + ++K L P R + YP ELSGGM+QR + + NP +
Sbjct: 128 VHGKI--KNIKEGIKKAVDILKSVLIPDPQRRVNNYPHELSGGMKQRVVIGIGLSNNPRI 185
Query: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
LIADE T+ALDVT Q +++L++ ++E ++I +TH+L ++ + ADRV VMYAGK+V
Sbjct: 186 LIADEPTTALDVTVQAQILDLINQ-LKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
Query: 232 EIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
EIG ++++ +NP HPYTQ LL ++P K E+L IPG +L+NPP GCRF+ RCP
Sbjct: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLT--KIEKLEAIPGTVPNLINPPSGCRFHPRCP 302
Query: 292 FAMEDCRDVEPKLVKVGRDHYAACHL 317
AM+ C+ P+L ++ H+ ACHL
Sbjct: 303 KAMDICKQKVPELKEIEPGHFVACHL 328
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 227 bits (572), Expect = 2e-58
Identities = 133/314 (42%), Positives = 188/314 (59%), Gaps = 7/314 (2%)
Query: 6 VRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPMEYKG 64
+ NL+ Y+ T G V+AVDGVSFEV EGE G+ GESG GKS S++ L +
Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60
Query: 65 GSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRR 124
G IFKGR+L+ L +E+RKI+ E+++I Q M ALNP I D + + H +
Sbjct: 61 GKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEK 120
Query: 125 EVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALD 182
E ++ + L V + + D YP +LSGGMRQRA + ++ P LLIADE T+ALD
Sbjct: 121 EARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALD 180
Query: 183 VTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLEN 242
VT Q ++EL+ +E +II +THD+ ++ +++D+V VMYAGKVVE G ++ +
Sbjct: 181 VTIQAQILELMKELQKE-YGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTE 239
Query: 243 PAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV-E 301
P HPYT LL S+PR+ V ++ERL IPG LN P GC+F+ RC F + DV E
Sbjct: 240 PKHPYTYALLESIPRIDV--EQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEE 297
Query: 302 PKLVKVGRDHYAAC 315
P+L + +H C
Sbjct: 298 PELEDLDGNHKVRC 311
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 226 bits (569), Expect = 4e-58
Identities = 132/322 (40%), Positives = 189/322 (57%), Gaps = 6/322 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
LL VR L+ Y+ T G V +V+GVSFEV GE V GESGCGKS S++ L + P +
Sbjct: 6 LLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGK 65
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
GG F G+DL ++ E RK++ +ELS+I Q + +LNP I + + ++ +H
Sbjct: 66 IVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQV 125
Query: 122 DRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ E ++ E L V + + +V YP +LSGGMRQR + ++ P LLIADE T+
Sbjct: 126 TKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTT 185
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALDVT Q +++L+ ++E +I+ +THDL ++ ++AD V+VMYAG+VVE + +
Sbjct: 186 ALDVTIQAQILQLMRKLVKENDT-AILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTL 244
Query: 240 LENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRD 299
PAHPYTQ LL S P +H E+L I G + PKGCRF+ RC A E C
Sbjct: 245 FATPAHPYTQGLLASTP--NIHASGEKLQSIEGTVPTHETMPKGCRFFPRCLHATEQCVH 302
Query: 300 VEPKLVKVGRDHYAACHLLGGE 321
EP L+K GR + C L G+
Sbjct: 303 QEPPLMKTGRGQHVRCWLFDGK 324
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 225 bits (568), Expect = 5e-58
Identities = 127/318 (39%), Positives = 194/318 (60%), Gaps = 13/318 (4%)
Query: 4 LDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPMEY 62
+ V+NL V Y + G ++ + VS ++ E ++ GVAGESG GKSTL +++ PP+
Sbjct: 6 ISVKNLNVGYLSDYGIIKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPPLYV 65
Query: 63 KGGSAIFKGR-DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG-- 119
+ GS I + D++S+ RDEL KI+ S +S +PQ A N+LNP +++K+ D+ + G
Sbjct: 66 ERGSIIVDSKYDILSMSRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKAKGMD 125
Query: 120 -YADRREVEELLRERLSMVKLSPR-VADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
YA+ V L E V L+ R V DMYP +LSGGM+QR + +S LLNP +LI DE
Sbjct: 126 YYANIDVVYNTLEE----VGLTDRQVLDMYPFQLSGGMKQRVVIAISLLLNPKILIMDEP 181
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ LDV Q +++LL +E + +++ ++HD+A+L QI+D + VMY G++VE G
Sbjct: 182 TTGLDVVVQYEILKLLKKIQKEKDL-TLVVISHDIAMLFQISDYIAVMYGGQIVEYGKYN 240
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
+LE HPYT LLL+S+P V + ++L IPG + PKGC F +RCPF C
Sbjct: 241 TLLEEAYHPYTYLLLSSVPT--VRSRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTSTC 298
Query: 298 RDVEPKLVKVGRDHYAAC 315
++V P++V + + C
Sbjct: 299 KEVPPQIVAYDKFGFYKC 316
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 224 bits (565), Expect = 1e-57
Identities = 125/319 (39%), Positives = 192/319 (60%), Gaps = 10/319 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LLDVR+L ++ RA+ GV+F V GE+ G+ GESGCGKS S++ P
Sbjct: 12 LLDVRDLETHFYGEESVTRALGGVNFHVKSGEMLGIVGESGCGKSVTALSILRLLPKQTA 71
Query: 63 K--GGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
K GG IFKGR+L+ L ++R+++ + +++I Q M +L+P + + + + HG
Sbjct: 72 KTVGGEVIFKGRNLLELSERQMREVRGNRIAMIFQDPMTSLSPVHTVGRQIAEAVQIHGR 131
Query: 121 ADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
R E E E L +V+++ R + YP E+SGGMRQRA + ++ +P+LLIADE T
Sbjct: 132 VSRAEALEKALEMLRLVRIADPERRLNNYPHEMSGGMRQRAMIAMALACSPELLIADEPT 191
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++ L+ +++ + +++F+THDL ++ + RV+VMYAG++VE + +
Sbjct: 192 TALDVTIQAQILRLIVD-LKDRMGTAVMFITHDLGVVAETCQRVIVMYAGRIVEQASVTD 250
Query: 239 VLENPAHPYTQLLLNSLP--RMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
+ P HPYT+ L+NS+P R G ++ RL IPG SL P GC F RCPFA+
Sbjct: 251 LFARPTHPYTRALMNSVPDRRRG---RQSRLPEIPGVVPSLREPLVGCSFAERCPFAIGV 307
Query: 297 CRDVEPKLVKVGRDHYAAC 315
CR+ P L ++ H AAC
Sbjct: 308 CREKMPVLSEIQPGHAAAC 326
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 224 bits (564), Expect = 1e-57
Identities = 128/328 (39%), Positives = 195/328 (59%), Gaps = 14/328 (4%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
A L+VR+L+V++ T G V++VDG+SF++ +G+ G+ GESG GKS ++ +
Sbjct: 23 AFLEVRDLKVHFPTDDGLVKSVDGLSFQLEKGKTLGIVGESGSGKSVTSLGIMGLHTAGQ 82
Query: 62 YK------GGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
Y G G +L+S D +RK++ E+++I Q ++AL+P I + +
Sbjct: 83 YGKRKARISGEIWLDGTELLSADPDHVRKLRGREMAMIFQDPLSALHPYYTIGQQIVEAY 142
Query: 116 REHGYADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
R H D++ + E L V + + D YP E SGGMRQRA + +S + NP+LLI
Sbjct: 143 RIHHKVDKKTAKRRAVEMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIAMSLVNNPELLI 202
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE T+ALDVT Q +++L+ +E ++I +THDL ++ ++AD ++VMY G+ VE
Sbjct: 203 ADEPTTALDVTVQAQILDLIRDLQKE-FGSAVIVITHDLGVVAELADDLLVMYGGRCVER 261
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFA 293
GP E+V P HPYT LL S+PR+ ++ERL + G P SL+N P GC F RCP+A
Sbjct: 262 GPAEKVFYEPRHPYTWGLLGSMPRLD-RDQQERLIPVKGSPPSLINLPSGCAFNPRCPYA 320
Query: 294 ----MEDCRDVEPKLVKVGRDHYAACHL 317
+ R V P+L +VG H+AACH+
Sbjct: 321 DVPKDDVTRTVRPELTEVGSKHWAACHM 348
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 223 bits (562), Expect = 2e-57
Identities = 124/320 (38%), Positives = 192/320 (59%), Gaps = 6/320 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
LL+V++L + ++T G V+A+ GV+F + +GE + GESG GKS ++ ++ PP
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+K G +F+G+DL+ L E++ ++ E+ +I Q M +LNPT ++ + ++ +H
Sbjct: 67 YFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEK 126
Query: 121 ADRREVEELLRERLSMV--KLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ ++ E L +V + + + +P E SGGMRQR + ++ NP LLIADE T
Sbjct: 127 ISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPT 186
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++EL+ +Q+ I SIIF+THDL ++ +ADRV VMYAG++VE G ++E
Sbjct: 187 TALDVTIQAQILELMKD-LQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDE 245
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ +P HPYT LL S+P + E L+ IPG P L NPPKG F R +AM+
Sbjct: 246 IFYDPRHPYTWGLLASMPTL-ESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDF 304
Query: 299 DVEPKLVKVGRDHYAACHLL 318
+ EP + KV HY LL
Sbjct: 305 EQEPPMFKVSDTHYVKSWLL 324
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 223 bits (562), Expect = 2e-57
Identities = 124/320 (38%), Positives = 192/320 (59%), Gaps = 6/320 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
LL+V++L + ++T G V+A+ GV+F + +GE + GESG GKS ++ ++ PP
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+K G +F+G+DL+ L E++ ++ E+ +I Q M +LNPT ++ + ++ +H
Sbjct: 67 YFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEK 126
Query: 121 ADRREVEELLRERLSMV--KLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ ++ E L +V + + + +P E SGGMRQR + ++ NP LLIADE T
Sbjct: 127 ISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPT 186
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++EL+ +Q+ I SIIF+THDL ++ +ADRV VMYAG++VE G ++E
Sbjct: 187 TALDVTIQAQILELMKD-LQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDE 245
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ +P HPYT LL S+P + E L+ IPG P L NPPKG F R +AM+
Sbjct: 246 IFYDPRHPYTWGLLASMPTL-ESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDF 304
Query: 299 DVEPKLVKVGRDHYAACHLL 318
+ EP + KV HY LL
Sbjct: 305 EQEPPMFKVSDTHYVKSWLL 324
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 223 bits (562), Expect = 2e-57
Identities = 124/320 (38%), Positives = 192/320 (59%), Gaps = 6/320 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
LL+V++L + ++T G V+A+ GV+F + +GE + GESG GKS ++ ++ PP
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+K G +F+G+DL+ L E++ ++ E+ +I Q M +LNPT ++ + ++ +H
Sbjct: 67 YFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEK 126
Query: 121 ADRREVEELLRERLSMV--KLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ ++ E L +V + + + +P E SGGMRQR + ++ NP LLIADE T
Sbjct: 127 ISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPT 186
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++EL+ +Q+ I SIIF+THDL ++ +ADRV VMYAG++VE G ++E
Sbjct: 187 TALDVTIQAQILELMKD-LQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDE 245
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ +P HPYT LL S+P + E L+ IPG P L NPPKG F R +AM+
Sbjct: 246 IFYDPRHPYTWGLLASMPTL-ESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDF 304
Query: 299 DVEPKLVKVGRDHYAACHLL 318
+ EP + KV HY LL
Sbjct: 305 EQEPPMFKVSDTHYVKSWLL 324
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 223 bits (562), Expect = 2e-57
Identities = 130/330 (39%), Positives = 189/330 (56%), Gaps = 20/330 (6%)
Query: 1 MALLDVRNLRVYY-------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL 53
M LL+V+ L+ Y+ + VGYVRAVD VSF++ +GE + GESGCGK+T S+
Sbjct: 1 MKLLEVKGLKKYFPLTKGFFKKVVGYVRAVDDVSFDIKQGETLALVGESGCGKTTTAKSI 60
Query: 54 ILRKPPMEYKGGSAIFK--GRD--LMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKD 109
+ P + G I G+D + L RDEL+ + + +I Q +LNP ++K+
Sbjct: 61 LRAIDPTD---GDVILHLDGKDVNIAKLSRDELKPYR-RYMQMIFQNPYTSLNPRMKVKE 116
Query: 110 IVWDLAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNP 169
IV + +G A +E+E+ + E L V L P YP SGG RQR + + L P
Sbjct: 117 IVGEPLLVNGIAKGKELEDRVAELLKAVGLRPEYMIRYPHAFSGGQRQRIVIARAIALRP 176
Query: 170 DLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
L++ DE TSALDV+ + ++ LL +QE + +F+THDL+++ I+DRV VMY GK
Sbjct: 177 KLVVCDEPTSALDVSIRAQILNLLMD-LQEEFALTYLFITHDLSVVEHISDRVAVMYLGK 235
Query: 230 VVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTR 289
+VE+ EE+ ENP HPYT+ LL S+P+ RE L I G + NPP GC F+ R
Sbjct: 236 IVELSSTEEIFENPKHPYTETLLRSVPKPDPDL-REELVPIEGEVPNPANPPSGCYFHPR 294
Query: 290 CPFAMEDCRDVEPKLVKVGRD---HYAACH 316
CP+A C++ P+ +G + HY ACH
Sbjct: 295 CPYAKSICKEEYPEFRNLGTEDNPHYVACH 324
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 223 bits (562), Expect = 2e-57
Identities = 127/320 (39%), Positives = 187/320 (57%), Gaps = 7/320 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP--M 60
LL+V++L + + T G V+A+ GV+F++ +GE + GESG GKS S++ P
Sbjct: 4 LLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPEGNS 63
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
E K G +F G D+ +++KI+ ++++I Q M +LNPT I + + +H
Sbjct: 64 EIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIKHQK 123
Query: 121 ADRREVEELLRERLSMVKLS--PRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ E + L +V ++ YP + SGGMRQR + +S NP +LIADE T
Sbjct: 124 ISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIADEPT 183
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q +++L+ +Q+ I SIIF+THDL ++ +ADRV VMY GK+VEIG ++E
Sbjct: 184 TALDVTIQAQILDLMKD-LQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTVDE 242
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ NP HPYT L++S+P + E L IPG P LL+PPKG F R +AM+
Sbjct: 243 IFYNPQHPYTWGLISSMPTLDT--DDEELFVIPGTPPDLLHPPKGDAFAARNKYAMQIDL 300
Query: 299 DVEPKLVKVGRDHYAACHLL 318
+ EP L KV HYAA LL
Sbjct: 301 EEEPPLFKVSDTHYAATWLL 320
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 222 bits (560), Expect = 4e-57
Identities = 126/326 (38%), Positives = 200/326 (60%), Gaps = 16/326 (4%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
+L VRNL V++ T G V+A++ VSF+V +GE F + GE+GCGKS ++ ++ P
Sbjct: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
Query: 61 EYKGGSAIFKGR----DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
+G ++ DL+ L +E+RKI+ +E++ I Q +L+P + + +
Sbjct: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
Query: 117 EHGYADRREVEELLRERLSMVK--LSP---RVADMYPVELSGGMRQRATMVVSTLLNPDL 171
HG + ++E +++ + ++K L P R + YP ELSGGM+QR + + NP +
Sbjct: 128 VHGKI--KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
Query: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
LIADE T+ALDVT Q +++LL+ M+E ++I +TH+L ++ + ADRV VMYAGK+V
Sbjct: 186 LIADEPTTALDVTIQAQILDLLNK-MKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
Query: 232 EIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
EIG ++++ +NP HPYTQ LL ++P K E+L IPG +L+ PP GCRF+ RCP
Sbjct: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLT--KIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
Query: 292 FAMEDCRDVEPKLVKVGRDHYAACHL 317
M C++ P+L ++ H+ ACHL
Sbjct: 303 KVMSICKEKVPELKEIEPGHFVACHL 328
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 222 bits (559), Expect = 6e-57
Identities = 130/322 (40%), Positives = 189/322 (58%), Gaps = 5/322 (1%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M +L+++N+ V Y+T V AV+ VSF + +GE G+ GESGCGKSTL S++ P
Sbjct: 1 MKVLELKNVSVRYKTGEKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRLLPKG 60
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH-G 119
GS +G D+ SL +E+R+I+ S++++I Q M +LNP RI+D ++ H
Sbjct: 61 TKIDGSIKIEGIDISSLSDEEMRQIRGSKVAMIFQDPMTSLNPILRIEDHFVEMILTHRP 120
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ + EL + L V ++ YP + SGGMRQR + +S +LNP +LIADE T+
Sbjct: 121 ELSKEDARELAAKALEDVGINRNRLKDYPFQFSGGMRQRVMIALSIVLNPAVLIADEPTT 180
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
+LDV Q ++ELL +E ++I +THD+ L+ + ADR+ VMYAG +VE+ E +
Sbjct: 181 SLDVIVQAQIMELLEKLTKEHRT-AMILITHDMGLVAEAADRIGVMYAGHLVELASKERI 239
Query: 240 LENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRD 299
NP HPYT LL S+P V+ K R IPG P L NPP+GCRF RC AM+ C +
Sbjct: 240 FTNPLHPYTVGLLRSIPNTDVNDKELRY--IPGSPPDLSNPPEGCRFAPRCEKAMKICWE 297
Query: 300 VEPKLVKVGRDHYAACHLLGGE 321
EP ++ C L GG+
Sbjct: 298 KEPPEFEIDGTR-VKCWLYGGD 318
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 222 bits (559), Expect = 6e-57
Identities = 128/325 (39%), Positives = 195/325 (59%), Gaps = 17/325 (5%)
Query: 3 LLDVRNLRVYYRT-----PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRK 57
+L V NL+ Y+ VG+V+AVDGVSFE+ +GE FG+ GESGCGK+T +++
Sbjct: 8 VLKVENLKKYFPVRGLLRTVGWVKAVDGVSFEIYKGETFGLVGESGCGKTTTGRTILRLI 67
Query: 58 PPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLARE 117
P + G IF G+D+ L +EL+ + + I+ Q ++L+P + + I+ + R
Sbjct: 68 EPTD---GRIIFMGKDVTKLKGNELKWFR-RKAQIMFQDPYSSLDPRQTVFQIIMEPVRF 123
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
HG + EE + + L V L+ YP E SGG RQR + L P+ ++ DE
Sbjct: 124 HGI-QVDDPEEFVIKLLESVGLNEMHLYRYPHEFSGGQRQRIALARLLALKPEFIVLDEP 182
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
TSALDV+ Q ++ L +QE + +F++HDL +++ ++DR+ VMY GK+VE+GP +
Sbjct: 183 TSALDVSVQANILNTLKE-LQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPAD 241
Query: 238 EVLENPAHPYTQLLLNSL----PRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFA 293
+V ENP HPYTQ+L +++ P + K++R+ + G P S +NPPKGCRF+ RCP+A
Sbjct: 242 KVFENPLHPYTQMLFSAIPIPDPDIAREMKKKRMK-VTGEPPSPVNPPKGCRFHPRCPYA 300
Query: 294 MED-CRDVEPKLVKVGRDHYAACHL 317
C EP LV+V +DHY AC L
Sbjct: 301 KAGLCDKKEPPLVEVEKDHYVACWL 325
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 221 bits (558), Expect = 7e-57
Identities = 130/329 (39%), Positives = 189/329 (56%), Gaps = 13/329 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
+L++R+L+VY+ G V+AVDGVSF++ GE+ G+ GESGCGKS S+ IL K
Sbjct: 4 VLEIRDLKVYFDLTEGTVKAVDGVSFDIRRGEILGLVGESGCGKSVTAQSILRILPKSAR 63
Query: 61 EYKGGSAIFKGRDLMSLPR-----DELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
G + + L R +E+R I+ ++S+I Q M + +P + + +
Sbjct: 64 IVNGEIVFHRNGKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFSPVYTVGAQMIEAI 123
Query: 116 REHGYADRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
H + E + + E L VK+ + +V DMYP ELSGGM QR + ++ LNP LL+
Sbjct: 124 LLHENVSKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRCMIAMAMSLNPTLLL 183
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE T+ALDVT Q ++ L+ +E SI+ +THD+ ++ Q+ADRV VMY G +VE
Sbjct: 184 ADEPTTALDVTIQAQILYLMKELQKE-YHSSILLITHDMGVVAQMADRVAVMYLGNIVET 242
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFA 293
+ E+ +NP HPYTQ LL S+P++G+ ++ RL I G N P GCRF+ RC
Sbjct: 243 AEVFELFKNPLHPYTQALLRSIPKIGI--RKTRLETIKGMVPDPYNLPTGCRFHNRCEKF 300
Query: 294 MEDCRDV-EPKLVKVGRDHYAACHLLGGE 321
M+ DV EP V+V H C L GGE
Sbjct: 301 MKGLCDVKEPPEVEVKPGHKVKCFLYGGE 329
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 220 bits (556), Expect = 1e-56
Identities = 126/329 (38%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKS--TLVHSLILRKPPM 60
LL V NL+ Y+ T G V++VDGV+F + +GE V GESG GKS +L ++ PP
Sbjct: 33 LLAVNNLKTYFNTDDGVVKSVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRLIPMPPG 92
Query: 61 EYKGGSAIFKGRD-----LMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
+ GG +F G+D L+++ E+R+I+ +++S+I Q M +LNP + D + +
Sbjct: 93 QIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLNPVYTVGDQIAEAV 152
Query: 116 REHGYADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
H R+E ++ + L V + + + YP ++SGGMRQR + ++ P LLI
Sbjct: 153 VLHQGKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALSCKPALLI 212
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE T+ALDVT Q +++L+ + +E + SI+F+TH+L ++ ++ADRV+VMY G+VVE
Sbjct: 213 ADEPTTALDVTIQAQILDLMRNLQRE-VGMSILFITHNLGVVAEMADRVVVMYGGRVVEE 271
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMGVH-------YKRERLSGIPGYPISLLNPPKGCRF 286
G + E+ + P HPYT LLNS+PR ++RL IPG + LN P GC F
Sbjct: 272 GDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAIPGNVPNPLNLPPGCTF 331
Query: 287 YTRCPFAMEDCRDVEPKLVKVGRDHYAAC 315
RC FA+ C P L G H A C
Sbjct: 332 EPRCKFAVPQCSQAVPALEDTGGGHMARC 360
>sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075084|pir||C64184 oligopeptide transport
ATP-binding protein oppD - Haemophilus influenzae
(strain Rd KW20) >gi|1574676|gb|AAC22775.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppD)
[Haemophilus influenzae Rd]
Length = 323
Score = 220 bits (555), Expect = 2e-56
Identities = 128/317 (40%), Positives = 189/317 (59%), Gaps = 6/317 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LLDV+NL V ++TP G V AV+ ++F + G G+ GESG GKS +L+
Sbjct: 4 LLDVKNLYVRFKTPDGVVTAVNDLNFTLNAGSTLGIVGESGSGKSQTAFALMGLLAANGE 63
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
GSAIF+G++L++LP EL KI+ ++S+I Q M +LNP +I + + ++ + H D
Sbjct: 64 VEGSAIFEGKELVNLPNAELNKIRAEQISMIFQDPMTSLNPYMKIGEQLMEVLQLHKGYD 123
Query: 123 RREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
++ + L VK+ + + MYP E SGGMRQR + ++ L P LLIADE T+A
Sbjct: 124 KQTAFAESVKMLDAVKMPEAKKRMGMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 183
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDVT Q ++ LL+ +E +II +THDL ++ I D+VMVMYAG+ +E G E++
Sbjct: 184 LDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDQVMVMYAGRTMEYGTAEQIF 242
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
+P HPY+ L++++PR+ + E L IPG P +LL+ PKGC F RC FA E C+ +
Sbjct: 243 YHPTHPYSIGLMDAIPRLDGN--EEHLVTIPGNPPNLLHLPKGCPFSPRCQFATEQCQ-I 299
Query: 301 EPKLVKVGRDHYAACHL 317
PKL C L
Sbjct: 300 APKLTTFNHGQLRNCWL 316
>dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli] >gi|1805527|dbj|BAA16041.1| (D90852)
Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 337
Score = 220 bits (555), Expect = 2e-56
Identities = 126/303 (41%), Positives = 180/303 (58%), Gaps = 5/303 (1%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
ALL+V++LRV + TP G V AV+ ++F + GE G+ GESG GKS +L+
Sbjct: 18 ALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG 77
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
GGSA F GR++++LP EL K++ ++S+I Q M +LNP R+ + + ++ H
Sbjct: 78 RIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNM 137
Query: 122 DRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ E E L VK+ + + MYP E SGGMRQR + ++ L P LLIADE T+
Sbjct: 138 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 197
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALDVT Q ++ LL+ +E +II +THDL ++ I D+V+VMYAG+ +E G +V
Sbjct: 198 ALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDV 256
Query: 240 LENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRD 299
P HPY+ LLN++PR+ + E + IPG P +LL PKGC F RCP AME C
Sbjct: 257 FYQPVHPYSIGLLNAVPRLDA--EGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSS 314
Query: 300 VEP 302
P
Sbjct: 315 APP 317
>sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442530|pir||A64872 oligopeptide transport
ATP-binding protein oppD - Escherichia coli
>gi|1787499|gb|AAC74328.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 337
Score = 220 bits (555), Expect = 2e-56
Identities = 126/303 (41%), Positives = 180/303 (58%), Gaps = 5/303 (1%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
ALL+V++LRV + TP G V AV+ ++F + GE G+ GESG GKS +L+
Sbjct: 18 ALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG 77
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
GGSA F GR++++LP EL K++ ++S+I Q M +LNP R+ + + ++ H
Sbjct: 78 RIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNM 137
Query: 122 DRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ E E L VK+ + + MYP E SGGMRQR + ++ L P LLIADE T+
Sbjct: 138 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 197
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALDVT Q ++ LL+ +E +II +THDL ++ I D+V+VMYAG+ +E G +V
Sbjct: 198 ALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDV 256
Query: 240 LENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRD 299
P HPY+ LLN++PR+ + E + IPG P +LL PKGC F RCP AME C
Sbjct: 257 FYQPVHPYSIGLLNAVPRLDA--EGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSS 314
Query: 300 VEP 302
P
Sbjct: 315 APP 317
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 220 bits (554), Expect = 2e-56
Identities = 126/326 (38%), Positives = 194/326 (58%), Gaps = 19/326 (5%)
Query: 3 LLDVRNLRVYY------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
+L V NL+ Y+ RT +G+V+AVDGVSFE+ GE FG+ GESGCGK+T +++
Sbjct: 5 VLKVENLKKYFPIRGLFRT-IGWVKAVDGVSFEIKRGETFGLVGESGCGKTTTGRTILRL 63
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
P + G IF G+D+ L +EL+ + + I+ Q ++L+P + + I+ + +
Sbjct: 64 IEPTD---GKIIFMGKDVTKLKGEELKWFR-RKAQIMFQDPYSSLDPRQTVFQIIMEPVK 119
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
HG + EE + L V L+ YP E SGG RQR + L P+ ++ DE
Sbjct: 120 FHGI-QVDDPEEFVIRLLESVGLNEMHLYRYPHEFSGGQRQRIALARLLALKPEFIVLDE 178
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
TSALDV+ Q ++ L +QE + +F++HDL +++ ++DR+ VMY GK+VE+GP
Sbjct: 179 PTSALDVSVQANILNTLKE-LQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPA 237
Query: 237 EEVLENPAHPYTQLLLNSL----PRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPF 292
+ + ENP HPYTQ+L +++ P + K++R+ + G P S +NPPKGCRF+ RCP+
Sbjct: 238 DRIFENPLHPYTQMLFSAIPIPDPDLAREMKKKRMK-VTGEPPSPINPPKGCRFHPRCPY 296
Query: 293 AMED-CRDVEPKLVKVGRDHYAACHL 317
A C EP +V+V +DHY AC L
Sbjct: 297 AKAGLCDKEEPPMVEVEKDHYVACWL 322
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 219 bits (553), Expect = 3e-56
Identities = 128/319 (40%), Positives = 182/319 (56%), Gaps = 7/319 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
+L V+NL V + T G V+AV GVSF++ +GE F + GESGCGKS S++ PP
Sbjct: 4 VLSVQNLHVSFTTYGGTVQAVRGVSFDLYKGETFAIVGESGCGKSVTSQSIMGLLPPYSA 63
Query: 63 K--GGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
K G +FK +DL L E+R I+ +++S+I Q M ALNPT + D + + H
Sbjct: 64 KVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMTALNPTLTVGDQLGEALLRHKK 123
Query: 121 ADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
++ + + LS+V + YP + SGGMRQR + ++ + PD+LIADE T
Sbjct: 124 MSKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALICEPDILIADEPT 183
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++EL ++ V S+I +THDL ++ Q+ADRV VMYAGK+ EIG ++
Sbjct: 184 TALDVTIQAQILELFKEIQRKTDV-SVILITHDLGVVAQVADRVAVMYAGKMAEIGTRKD 242
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ P HPYT+ LL S+PR+ ++ L+ I G P L +PP GC F RCP M C
Sbjct: 243 IFYQPQHPYTKGLLGSVPRLDLN--GAELTPIDGTPPDLFSPPPGCPFAARCPNRMVVCD 300
Query: 299 DVEPKLVKVGRDHYAACHL 317
V P H C L
Sbjct: 301 RVYPGQTIRSDSHTVNCWL 319
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 219 bits (553), Expect = 3e-56
Identities = 124/321 (38%), Positives = 187/321 (57%), Gaps = 10/321 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
LL+VR+L V + T G +AV+GVS+ V GE V GESG GKS ++ IL PP
Sbjct: 2 LLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILDIPPG 61
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G +F+GRDL+ L +E RK++ +E+++I Q A+++LNP + + ++ H
Sbjct: 62 RVTAGEILFEGRDLLKLKEEERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHRG 121
Query: 121 ADRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
R++ E + V++ + YP + SGGMRQR + ++ L P L+IADE T
Sbjct: 122 MSRKDAHAKAVELMDRVRIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLIIADEPT 181
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q V++LL +E + +I +THDL ++ +AD++ VMYAG++VE P+ +
Sbjct: 182 TALDVTVQAQVMDLLAELQRE-LHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD 240
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ + PAHPYT+ LL S+PR+ K + L I G P +L P GC F+ RCP A + CR
Sbjct: 241 IYKAPAHPYTRGLLESIPRL--DQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCR 298
Query: 299 DVEPKLVKV---GRDHYAACH 316
P L V + +ACH
Sbjct: 299 TDVPPLYDVTESDAERGSACH 319
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 219 bits (552), Expect = 4e-56
Identities = 126/313 (40%), Positives = 187/313 (59%), Gaps = 11/313 (3%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M +L +RNL VYY T + +V+ + V+ +V +GE+ GV GESG GKSTL H++ PP
Sbjct: 4 MVVLQIRNLNVYYNTLISWVKVLSDVNLDVEKGEIVGVVGESGSGKSTLGHAISRILPPN 63
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA--REH 118
G I G +L L EL+K + + + +I Q +N+LNP K++ + + R
Sbjct: 64 ARIQGDIIVDGVNLAKLKDSELQKYRGTWVFMIFQNPLNSLNPVKKVGSQLLEAVKIRYQ 123
Query: 119 GYADRREVEELLRERLSMVK----LSP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
+ E E L+R+ + ++K P + D YP +LSGG QR + ++ LL P LLI
Sbjct: 124 REGKKAEEESLMRDVIEVLKDLRLPDPYSIIDRYPHQLSGGQVQRIVISMALLLKPKLLI 183
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE TSALDVT Q V+ L +E I SI+F+THD++L ++DR++VMYAG+++E
Sbjct: 184 ADEPTSALDVTIQAQVVNLFKQLNKE-INTSILFITHDISLAYVVSDRIVVMYAGRIMED 242
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFA 293
G +EEVL++P HPYTQ L+ S+P K ++L+ IPG P S P GC+F RC
Sbjct: 243 GKVEEVLKSPMHPYTQGLVASIPSGD---KNQKLTAIPGNPPSFFALPTGCKFSNRCSKV 299
Query: 294 MEDCRDVEPKLVK 306
+ CR EP +++
Sbjct: 300 FDICRKKEPSIIE 312
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 219 bits (551), Expect = 5e-56
Identities = 117/291 (40%), Positives = 176/291 (60%), Gaps = 5/291 (1%)
Query: 26 VSFEVGEGEVFGVAGESGCGKSTLVHSLILR-KPPMEYKGGSAIFKGRDLMSLPRDELRK 84
++ V +G + G+AGESG GKSTL ++ K P E G +D++ + ++LR+
Sbjct: 1 MNLRVRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQVYLDDQDILRINGEDLRR 60
Query: 85 IQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLSMVKLSPRVA 144
I+ + S IPQ AMNALNP KRI+ +DL HG + E+ ++ + MV+L V
Sbjct: 61 IRATRFSFIPQAAMNALNPVKRIRYQFYDLLIAHGLQPEKN-EDRIQAAIKMVRLRENVL 119
Query: 145 DMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKS 204
+ +P ELSGGMRQR + +S LL PDL+I DE T+ LDV Q +++ L ++ + +
Sbjct: 120 ESFPHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQSGL-T 178
Query: 205 IIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKR 264
+IF+THDL++L +IAD + ++YAG++VE GP +E+L +P HPY LLL S+PR+G KR
Sbjct: 179 MIFITHDLSILYEIADEIAMIYAGEIVEFGPRDEMLNDPQHPYNFLLLRSMPRIGA--KR 236
Query: 265 ERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAAC 315
+ G P + GC+FYTRCPF++ C P+L H+ C
Sbjct: 237 GTGYRLIGNPGNFREDFNGCQFYTRCPFSVPQCVSKHPELTSDDGRHFRRC 287
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 218 bits (550), Expect = 6e-56
Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 10/308 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKS-TLVHSLILRKPPME 61
+L+VR+LR + T V+AVDGV+F V +G+ G+ GESG GKS T + L L + P +
Sbjct: 12 ILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEPGK 71
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
GG FKG +L++ +RKI+ +E+S+I Q M +LNP + + + R H
Sbjct: 72 VVGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRIHEKL 131
Query: 122 DRREVEELLRERLSMVKL----SP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
++E L+ + M+KL SP + YP ELSGGMRQR + ++ NP+LLIADE
Sbjct: 132 GKKEA---LKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIADE 188
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T+ALDVT Q ++EL+ +Q+ + SII +THDL ++ + D V VMY GKVVE +
Sbjct: 189 PTTALDVTIQAQILELMKD-LQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADV 247
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
+ + +NP HPYT LLNSLPR + + E LS I G S + P+GCRF RCPFA +
Sbjct: 248 KTLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDI 307
Query: 297 CRDVEPKL 304
C++ P L
Sbjct: 308 CKERLPDL 315
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 218 bits (550), Expect = 6e-56
Identities = 131/329 (39%), Positives = 190/329 (56%), Gaps = 22/329 (6%)
Query: 3 LLDVRNLRVYY--------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
LL V L+ Y+ RT V +V+AVD VSF + EGE + GESGCGKST +++
Sbjct: 5 LLKVEGLKQYFPIKGGILGRT-VNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAIL 63
Query: 55 LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
P + G F+G DL+SL + E+RK + +L II Q ++NP + I+ ++ +
Sbjct: 64 RLDEPTD---GKIEFQGEDLLSLNKREMRK-KRKDLQIIFQDPYASINPRQTIRQVLEEA 119
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
R + E +RE + V L AD +P E SGG RQR + + +NP L++
Sbjct: 120 MEIQKVVPRDKRGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNPKLIVC 179
Query: 175 DEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
DE SALDV+ Q VI LL +E + +F++HDL ++R I+DRV+VMY G++VEI
Sbjct: 180 DEAVSALDVSIQAQVINLLKRLQRE-FKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIA 238
Query: 235 PMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAM 294
+ ENP HPYT+ LL+++P K+ER+ + G S ++PP GCRF+TRCPFA
Sbjct: 239 DKTSLFENPQHPYTKALLSAIPVPDPEKKKERII-LKGDVPSPIDPPNGCRFHTRCPFAT 297
Query: 295 EDCRDVEPKL-----VKVGRDHYAACHLL 318
+ CR P+L +K G H AACH +
Sbjct: 298 DKCRTETPELRTADYMKDG--HLAACHYM 324
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 217 bits (547), Expect = 1e-55
Identities = 120/322 (37%), Positives = 194/322 (59%), Gaps = 9/322 (2%)
Query: 4 LDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYK 63
L VR+L + Y+ G +RA++ V F++ +G+ GV GE+G GK+T+ ++++ P
Sbjct: 3 LQVRDLNISYKIGKGSIRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIMRALPENAEY 62
Query: 64 GGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRI-KDIVWDLAREHGYA 121
GS F +D++ + ++ RK I++ ++SIIPQY+MNA NP KR+ + +V +
Sbjct: 63 SGSIFFNNKDILKMDQETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMMENDSNI 122
Query: 122 DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSAL 181
D + E + + + L P + P ELSGG RQR + + LL+P+L+IADE T+AL
Sbjct: 123 DTSKASERIFYLFNQLSLPPEIYKKLPDELSGGQRQRVVIASALLLDPELVIADEPTTAL 182
Query: 182 DVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLE 241
DV Q VI L+ + + K++I++THD+A++ +A +V+ +YAG+++E G ++ +
Sbjct: 183 DVINQARVISLIKREIVDK-QKTLIYITHDIAVVAGVAKKVLTLYAGEIMEFGDSRKIFK 241
Query: 242 NPAHPYTQLLLNSLP--RMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRD 299
P HPY++ LL+S+P R G K +++ IPG P L KGC F RC A + C+
Sbjct: 242 EPLHPYSKGLLSSVPDIRFG---KVKKVHYIPGDPPDLSKEIKGCPFAPRCSIAKDICKV 298
Query: 300 VEPKLVKVGRDHYAACHLLGGE 321
+PKL V Y ACHL+GGE
Sbjct: 299 EKPKLRYVD-GRYVACHLVGGE 319
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 217 bits (547), Expect = 1e-55
Identities = 120/319 (37%), Positives = 188/319 (58%), Gaps = 7/319 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
+L++ LR ++ T G V AVDGVS + +GE+ G+ GESGCGKS S+ ++ PP
Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+ G FKG DL+ + +++I+ +++++I Q M +LNP I + + + R H
Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124
Query: 121 ADRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
++E + L V + + +A YP +LSGGMRQR + ++ +P +LIADE T
Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPT 184
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q +++L+ H + E +I+ +THDL ++ ++ +RV+VMYAG+VVE G +
Sbjct: 185 TALDVTIQAQILDLMRH-LNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRM 243
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+L++P HPYT+ LL SLP+ +H + +RL IPG GCRF RC A E C+
Sbjct: 244 ILKHPKHPYTKGLLKSLPK--IHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCK 301
Query: 299 DVEPKLVKVGRDHYAACHL 317
P+L +V H C L
Sbjct: 302 TTAPQLQQVATGHQCRCFL 320
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 215 bits (541), Expect = 7e-55
Identities = 125/322 (38%), Positives = 184/322 (56%), Gaps = 9/322 (2%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPP 59
++L +RNL+ +RT ++RAVDG+S + GE G+ GESG GKS S+ ++ P
Sbjct: 17 SILSIRNLQTVFRTDHEHIRAVDGISLSISPGETLGIVGESGSGKSVTARSIMGLVDAPG 76
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
S +F G +L L D+ ++++ S + +I Q + +LNP + + + + R +
Sbjct: 77 EVLPESSIVFDGTELTELSADQYQEVRGSGVGMIFQDPLKSLNPVYTVGNQIREALRINR 136
Query: 120 YADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+E ++ + L V + R D YP E SGGMRQRA + + +PD+LI DE
Sbjct: 137 GITGQEATDVAIDLLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMMLACDPDVLICDEP 196
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDVT Q ++ELL E + +I+F+THD+ ++ +I+DRV VMYAG+ VE P+E
Sbjct: 197 TTALDVTIQAQIVELLQDIQAERDL-AILFITHDMGVIAEISDRVNVMYAGEFVEKAPVE 255
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
E+ NP HPYTQ LL+++P G ERL+ I G + P CRF RCP A EDC
Sbjct: 256 ELFANPKHPYTQGLLDAIP--GTSVDDERLNTIEGDVPTPNQPATDCRFAPRCPKAFEDC 313
Query: 298 RDVEPKLVKVG--RDHYAACHL 317
+V P V V DH AC L
Sbjct: 314 TEVHPTHVSVSDTHDHSTACLL 335
>pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC1094 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655563|gb|AAF94253.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 324
Score = 214 bits (540), Expect = 9e-55
Identities = 121/317 (38%), Positives = 187/317 (58%), Gaps = 5/317 (1%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M+LLDV++LRV + T G V AV+ ++F + +GE G+ GESG GKS V +++
Sbjct: 2 MSLLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKN 61
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GSA F+G+++++LP EL K++ ++++I Q M +LNP ++ D + ++ H
Sbjct: 62 GKITGSAKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKG 121
Query: 121 ADRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ E E L VK+ + + MYP E SGGMRQR + ++ L P LLIADE T
Sbjct: 122 MGKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 181
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++ELL+ +E +II +THDL ++ D+V+VMYAG+ +E G + +
Sbjct: 182 TALDVTVQAQIMELLNELKRE-FNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVND 240
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ NP+HPY + LL+++PR+ + E L IPG P +LL P GC + RC + C+
Sbjct: 241 IFYNPSHPYAEGLLSAIPRLDT--EGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCK 298
Query: 299 DVEPKLVKVGRDHYAAC 315
P L+ G AC
Sbjct: 299 REAPILLPFGNSRQRAC 315
>sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|47805|emb|CAA29042.1| (X05491) Opp D (AA1-335)
[Salmonella typhimurium]
Length = 335
Score = 213 bits (537), Expect = 2e-54
Identities = 123/302 (40%), Positives = 177/302 (57%), Gaps = 5/302 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL+V +LRV + TP G V AV+ ++F + GE G+ GESG GKS +L+
Sbjct: 17 LLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLATNGR 76
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
GGSA F GR++++LP EL ++ ++S+I Q M +LNP R+ + + ++ H
Sbjct: 77 IGGSATFNGREILNLPERELNTLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 136
Query: 123 RREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+ E E L VK+ + + MYP E SGGMRQR + ++ L P LLIADE T+A
Sbjct: 137 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 196
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDVT Q ++ LL+ +E +II +THDL ++ I D+V+VMYAG+ +E G +V
Sbjct: 197 LDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVF 255
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
P HPY+ LLN++PR+ + + IPG P +LL PKGC F RCP AME C +
Sbjct: 256 YQPVHPYSIGLLNAVPRL--DSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNA 313
Query: 301 EP 302
P
Sbjct: 314 PP 315
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 213 bits (536), Expect = 3e-54
Identities = 116/317 (36%), Positives = 186/317 (58%), Gaps = 7/317 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL +L+ Y+ ++AVDG+S E+ EGE G+ GESGCGKSTL +++ P
Sbjct: 13 LLQTVDLKKYFPQGKRILKAVDGISIEIKEGETLGLVGESGCGKSTLGRTILKLLRP--- 69
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
GG F+G+D+ +L E++ + ++ II Q + +LNP + I+ D H
Sbjct: 70 DGGKIFFEGKDITNLNDKEMKPYR-KKMQIIFQDPLGSLNPQMTVGRIIEDPLIIHKIGT 128
Query: 123 RREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALD 182
++E + + E L MV + + +P E SGG +QR + + LNP ++ DE SALD
Sbjct: 129 KKERRKRVEELLDMVGIGREFINSFPHEFSGGQQQRIGIARALALNPKFIVCDEPVSALD 188
Query: 183 VTTQRVVIELLHHFMQE-GIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLE 241
V+ Q +I+LL Q+ GI S +F+ H+LA++ I+ +V VMY GK+VE G ++++
Sbjct: 189 VSIQAQIIDLLEEIQQKMGI--SYLFIAHNLAVVEHISHKVAVMYLGKIVEYGDVDKIFL 246
Query: 242 NPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVE 301
NP HPYT+ LL S+P++ +++R + G S ++ PKGCRF TRC C + E
Sbjct: 247 NPIHPYTRALLKSVPKIPWDGQKQRFYSLKGELPSPIDLPKGCRFQTRCTEKKAICFEKE 306
Query: 302 PKLVKVGRDHYAACHLL 318
P+L +V ++H+ +CHL+
Sbjct: 307 PELTEVEKNHFVSCHLV 323
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 210 bits (530), Expect = 1e-53
Identities = 120/320 (37%), Positives = 183/320 (56%), Gaps = 13/320 (4%)
Query: 3 LLDVRNLRVYY-------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLIL 55
LL+V NL+ Y+ V V+AV+ ++F VG+GEV G+ GESG GK+T +L+
Sbjct: 27 LLEVNNLQKYFPIRGGLMSRVVANVKAVNDITFRVGKGEVVGLIGESGSGKTTAGRALLR 86
Query: 56 RKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
P GG IF G D+ L + ++R + E+ II Q +LNP + DI+ +
Sbjct: 87 LIEPT---GGQVIFNGTDITKLGKSQMRDYR-REMQIIFQDPFASLNPRMTVSDILGEAM 142
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
+ H + + + E L V L P YP E SGG RQR + + ++P ++AD
Sbjct: 143 QIHNLHPGKARVDRIAELLQRVGLRPEHMGRYPHEFSGGQRQRIGIARALAVDPSFIVAD 202
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E SALDV+ Q V+ L+ +QE + +++F+ HDL ++ I DR++VMY G+++EI P
Sbjct: 203 EPVSALDVSIQAQVVNLIQD-LQEELGLTVLFIAHDLHVVEYICDRMIVMYLGRIMEIAP 261
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAME 295
E+ NP HPYT+ LL++ P KR+R+ + G S +NPP GC F TRC +A+
Sbjct: 262 SRELNRNPKHPYTEALLSASPVPDPTIKRQRII-LEGDIPSPINPPSGCVFRTRCRYAIA 320
Query: 296 DCRDVEPKLVKVGRDHYAAC 315
DC ++ P+L +V DH+ AC
Sbjct: 321 DCANIVPELREVSPDHFKAC 340
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 210 bits (530), Expect = 1e-53
Identities = 119/303 (39%), Positives = 180/303 (59%), Gaps = 12/303 (3%)
Query: 14 RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRD 73
R P VRAVDGVS V GE G+ GESG GKST+ +++ P+ G+ F GR
Sbjct: 28 RRPASAVRAVDGVSLSVQAGETLGLVGESGSGKSTIGRAILGLNEPLS---GTIHFDGRP 84
Query: 74 LMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRER 133
S R +LR+ + ++ Q ++LNP +I D + ++ R H +++V+ +R
Sbjct: 85 THS--RRDLRR----RMQMVFQDPYSSLNPRLKIGDAIGEVLRFHSIVPKQDVDREVRRL 138
Query: 134 LSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELL 193
LS+V LS +A+ P E+SGG RQRA + + L PD L+ DE +ALDV+ Q ++ LL
Sbjct: 139 LSLVGLSAAMAERRPREMSGGQRQRAGIARALALRPDFLVLDEPVAALDVSIQAQILNLL 198
Query: 194 HHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLN 253
QE + +++F+ H L ++R ++DR+ V+Y GK++E+GP V E+ HPYT+ LL+
Sbjct: 199 TDLRQE-LGLTMLFIAHGLGVVRHMSDRIAVLYLGKIMEVGPAHAVFESSRHPYTKALLS 257
Query: 254 SLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYA 313
++P + + KR+R G S LN P GCRF TRCP A + C+ +P V VG DH++
Sbjct: 258 AVPEINL-VKRQRPPVTQGDVPSPLNVPSGCRFRTRCPVAQDICK-TQPPEVPVGPDHFS 315
Query: 314 ACH 316
CH
Sbjct: 316 RCH 318
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 210 bits (530), Expect = 1e-53
Identities = 125/322 (38%), Positives = 186/322 (56%), Gaps = 13/322 (4%)
Query: 3 LLDVRNLRV-------YYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLIL 55
LL+V+NL ++ VG VRAVD +SF V EGEV G+ GESGCGKST IL
Sbjct: 5 LLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKST-TGKAIL 63
Query: 56 RKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
R +E G F G ++ +L ++RK + ++ II Q +LNP I+ I+ +
Sbjct: 64 RL--IEPSSGEVYFAGTEITALSEGDMRK-RRRDMQIIFQDPYASLNPRHTIEKIIREPL 120
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
H ++E E + E L V LS A YP + SGG RQR + + ++P L+I D
Sbjct: 121 IVHQIGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICD 180
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E SALDV+ Q ++ L+ ++E + IF+ HDL++++ I+DRV VMY G++VE+
Sbjct: 181 EPVSALDVSVQSQILNLMAD-LKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMAT 239
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAME 295
+++ ENP HPYT+ LL+++P +E++ + G S NPP+GC F+TRCP M+
Sbjct: 240 KDQLFENPKHPYTRALLSAVPVPDPDAAKEKIL-LKGDVPSPSNPPEGCAFHTRCPDCMD 298
Query: 296 DCRDVEPKLVKVGRDHYAACHL 317
C+ P L + + HY ACHL
Sbjct: 299 VCKIKRPSLHEKEKGHYVACHL 320
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 210 bits (530), Expect = 1e-53
Identities = 121/311 (38%), Positives = 181/311 (57%), Gaps = 10/311 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL +++L V+Y T G + +D ++ ++ +GE+ + GES GKSTL + PP+
Sbjct: 2 LLSIKHLNVWYNTVAGKYKVIDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLPPVGI 61
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD-LAREHGYA 121
G + G D++ L E+ KI+ + + +I Q +N+LNP KRI++ + + LA +
Sbjct: 62 TSGEVVLDGVDVLKLSEKEMTKIRGTTVFMIFQNPLNSLNPVKRIEEQLMEALAIRNSRM 121
Query: 122 DRREVEELLRERLSMVKLSPRVAD------MYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
+ + E R+ + S R+ D YP ELSGG QR + ++ LL P LLIAD
Sbjct: 122 NIQMTFEEARKEVIKALESLRLPDPEKILIRYPHELSGGQVQRVVICMALLLRPKLLIAD 181
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E T+ALDVT Q V++LL + +IIF+THD+ L ++DR++V YAG+V+E G
Sbjct: 182 EPTTALDVTIQAQVVKLLKD-LNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRVMEQGQ 240
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAME 295
E+++NP HPYT LL S+P H +L IPGYP S L+ PKGC+F RC FA E
Sbjct: 241 TVEIVKNPLHPYTSGLLASIPSSPKH--SGKLYSIPGYPPSYLSLPKGCKFAPRCRFAFE 298
Query: 296 DCRDVEPKLVK 306
C + EP +K
Sbjct: 299 RCFEEEPSYIK 309
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 210 bits (529), Expect = 2e-53
Identities = 124/295 (42%), Positives = 176/295 (59%), Gaps = 20/295 (6%)
Query: 14 RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRD 73
R P YVRA+D VS E+ +GEV GV GESG GK+TL L + P GG+ IF G +
Sbjct: 29 REPPIYVRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPT---GGNLIFMGME 85
Query: 74 LMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRER 133
+ + +RK + ++ Q M ++NP ++KDIV + +E + EE +++
Sbjct: 86 VNDRNINHVRK----HIHMVFQNPMTSINPRMKVKDIVREAMKE-------KREERVKKL 134
Query: 134 LSMVKLSPR-VADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIEL 192
L V L V D YP ELSGG QR + + PD LI DE TSALD + Q ++ L
Sbjct: 135 LEEVGLDYNYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNL 194
Query: 193 LHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLL 252
L +E + + +F+TH++A+ R I+DRV++MYAGK+VE G +EV+ P HPYTQ LL
Sbjct: 195 LVDLQKERKL-TYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPMHPYTQSLL 253
Query: 253 NSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKV 307
+S+P +G ++ L G SL+NPP GCRF RCPFAM C++ EP LV++
Sbjct: 254 SSVPELG----KKELKPPSGEVPSLINPPSGCRFNPRCPFAMSVCKEKEPPLVEI 304
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 210 bits (528), Expect = 2e-53
Identities = 122/318 (38%), Positives = 181/318 (56%), Gaps = 14/318 (4%)
Query: 8 NLRVYYRTPVG-------YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
NL+ Y+ G YV AVDG+S + +GE FG+AGESGCGKST L+ P
Sbjct: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPT 70
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
E GS F G D+ L +DE+RK++ + I+ Q ++LNP I D + H
Sbjct: 71 E---GSIYFDGIDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRL 126
Query: 121 ADRREVE-ELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
A+ E + + + E L V L YP ELSGG QR ++ + + NPD ++ DE TS
Sbjct: 127 AESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTS 186
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALD++ Q ++ LL + +Q + +F++HD+++L+ ++DR+ +MY GKVVEI +++
Sbjct: 187 ALDISVQAQILNLLVN-LQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDF 245
Query: 240 LENPA-HPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ HPYT LL S P + + R + G S +N P GCRF+ RCPF + C+
Sbjct: 246 RKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCK 305
Query: 299 DVEPKLVKVGRDHYAACH 316
D EP LV++ +DHY ACH
Sbjct: 306 DEEPPLVEIKKDHYVACH 323
>pir||QREBOT oligopeptide transport protein oppD - Salmonella typhimurium
Length = 335
Score = 208 bits (524), Expect = 7e-53
Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 5/302 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL+V +LRV + TP G V AV+ ++F + GE G+ GESG GKS L+
Sbjct: 17 LLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQSRLRLMGLLATNGR 76
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
GGSA F GR++++LP EL + ++S+I Q M +LNP R+ + + ++ H
Sbjct: 77 IGGSATFNGREILNLPERELNTRRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 136
Query: 123 RREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+ E E L VK+ + + MYP E SGGMRQR + ++ L P LLIADE T+A
Sbjct: 137 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 196
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDVT Q ++ LL+ +E +II +THDL ++ I D+V+VMYAG+ +E G +V
Sbjct: 197 LDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVF 255
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
P HPY+ LLN++PR+ + + IPG P +LL PKGC F RCP AME C +
Sbjct: 256 YQPVHPYSIGLLNAVPRL--DSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNA 313
Query: 301 EP 302
P
Sbjct: 314 PP 315
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 208 bits (523), Expect = 9e-53
Identities = 123/305 (40%), Positives = 185/305 (60%), Gaps = 13/305 (4%)
Query: 18 GY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMS 76
GY VRAVD VSFEVGEGE+ + GESG GK+T + LILR ++ G +F+G D+ S
Sbjct: 21 GYEVRAVDDVSFEVGEGEIVSLIGESGSGKTT-IGKLILRL--LKPTSGRILFRGEDIWS 77
Query: 77 LPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH---GYADRREVEELLRER 133
R++LR+ Y + + Q + NP ++ D V+DL + G A E EEL++
Sbjct: 78 FDREKLRRYYYKNVQAVFQDPFASFNPLHKV-DRVFDLVFRNFLRGVAPG-EREELIKRS 135
Query: 134 LSMVKLSP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIEL 192
L V L+P V YP +LSGG QR + + L+ P LLIADE S LD +T+ ++ L
Sbjct: 136 LESVGLNPGEVLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDILNL 195
Query: 193 LHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLL 252
L F ++ S+IF+THDLAL I+D++++MY G++VE G E V NP HPYT++LL
Sbjct: 196 LGEF-RDKFGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERVFGNPLHPYTRMLL 254
Query: 253 NSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHY 312
S+P + V ++ + + P + KGCRF RCP+A ++C + P+ +++ ++H+
Sbjct: 255 ESVPDLSVRWEFKGIE--PEREEERVYEIKGCRFAPRCPYARKECYEKPPQTIEIEKNHH 312
Query: 313 AACHL 317
AC+L
Sbjct: 313 VACYL 317
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 207 bits (522), Expect = 1e-52
Identities = 120/326 (36%), Positives = 183/326 (55%), Gaps = 22/326 (6%)
Query: 3 LLDVRNLRVYYRTPVG-----------YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVH 51
+L V NL+ Y+ +VRAVDGVSFE+ +GEV + GESGCGK+T
Sbjct: 1 MLRVENLKKYFPVQKSVLEVLLSGRRDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGR 60
Query: 52 SLILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIV 111
++ + P G FK R++ SL +E R+++ + ++ Q +LNP +I + +
Sbjct: 61 IIVGLERPTS---GKIYFKDREITSLSEEEQRRMK-RHIQMVFQDPYASLNPRMKIGEHL 116
Query: 112 WDLAREHGYADRREVEELLRERLSMVKL-SPRVADMYPVELSGGMRQRATMVVSTLLNPD 170
+ HG A+ E E+ L V L + + P +LSGG RQR + + +L PD
Sbjct: 117 VESLTIHGIAENDEAREMAMSMLDRVGLPGEQFFNRMPYQLSGGQRQRVAIARAMILKPD 176
Query: 171 LLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
++ADE S +DV+ + +++LL F E + S++F+THDL++ R + DR+ VMY GK+
Sbjct: 177 FVVADEPVSMIDVSLRAAILDLLMSFRDEYNL-SMLFITHDLSVARIVGDRIAVMYLGKI 235
Query: 231 VEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRC 290
+EIG EV+ NP HPYT LL+S+P ++ + G PI + P GCR++ RC
Sbjct: 236 MEIGKTREVIHNPRHPYTAALLSSVPSFVKKGRKVEIIGDIANPIDI---PSGCRYHPRC 292
Query: 291 PFAMEDCRDVEPKLVKVGRDHYAACH 316
PFA E C+ EP+L G +H ACH
Sbjct: 293 PFAREKCKKEEPEL--EGGEHSFACH 316
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 207 bits (522), Expect = 1e-52
Identities = 129/327 (39%), Positives = 186/327 (56%), Gaps = 16/327 (4%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
+++V NL+VY+ T G V+A++ VSF + GE + + GE+GCGKS +L L PP
Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68
Query: 62 YKGGSAIF---KGR--DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
G + GR D+MSL ELR+I+ E++ I Q AL+P I V +
Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETML 128
Query: 117 EHGYADRREVEELLRERLSMVK--LSP---RVADMYPVELSGGMRQRATMVVSTLLNPDL 171
HG R + E +R + ++K L P + YP ELSGGM+QR + +S P L
Sbjct: 129 AHGRV--RSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKL 186
Query: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
LIADE T+ALDVT Q +++LL +E + +++ +TH+L L+ + DRV VMYAG +V
Sbjct: 187 LIADEPTTALDVTIQAQIMDLLTQLKREHGL-TLLLITHNLGLVAEYCDRVAVMYAGNIV 245
Query: 232 EIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
E P++E+ NP HPYT+ L+ ++P K E L IPG +L+ PP GCRF+ RCP
Sbjct: 246 EEAPVDELFSNPLHPYTRALIRAVPNPLA--KIENLEHIPGTVPNLITPPPGCRFHPRCP 303
Query: 292 FAMEDCRDVEPKLVKVGRDHYAACHLL 318
A + C +P L + H AAC L
Sbjct: 304 LAFDRCSREKPLLKEYSPGHKAACWAL 330
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 207 bits (521), Expect = 2e-52
Identities = 123/333 (36%), Positives = 186/333 (54%), Gaps = 22/333 (6%)
Query: 1 MALLDVRNLRVYY--------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHS 52
MALL+V+NL+ Y+ R VGY++AVDG+SF + EGE G+ GESGCGK+T
Sbjct: 1 MALLEVKNLKKYFPIIKRGFRRKVVGYLKAVDGISFHIEEGETLGLVGESGCGKTTTAKL 60
Query: 53 LILRKPPMEYKGGSAIF----KGRDLMSLPRDELRKIQYSE-LSIIPQYAMNALNPTKRI 107
++ P E G + + D+ L ELR+ L +I Q ++LNP +
Sbjct: 61 IMRGIEPTE---GEIVLNMDGEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTV 117
Query: 108 KDIVWDLAREHGYAD-RREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTL 166
+DI+ + +G + E++ ++ + L V L P YP SGG RQR + +
Sbjct: 118 RDIIAEPLVVNGVIKGKEEIDAIVSDLLRAVGLRPEYMQRYPHAFSGGQRQRIAIARAIA 177
Query: 167 LNPDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMY 226
L P L++ DE TSALDV+ Q +I LL +E + + +F++HDL ++ I +RV VMY
Sbjct: 178 LKPKLVLCDEPTSALDVSVQAQIINLLKDLQKEYNL-TYLFISHDLGVVEHITNRVAVMY 236
Query: 227 AGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRF 286
G++VE+ EE+ +P HPYT+ LL+++P+ KR++ + + G NPP GC F
Sbjct: 237 VGRIVELAETEELFSSPKHPYTEALLSAVPKPDPKRKRKK-AQLTGEVPDPSNPPSGCYF 295
Query: 287 YTRCPFAMEDCRDVEPKLVKVGRD---HYAACH 316
+ RCP+A C++V P L VG D H ACH
Sbjct: 296 HPRCPYAKAICKEVYPDLRNVGTDQNPHLVACH 328
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 206 bits (520), Expect = 2e-52
Identities = 130/329 (39%), Positives = 190/329 (57%), Gaps = 16/329 (4%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKS-TLVHSLILRKPPM 60
A L VR+L+V++ T G V+AVDG+SF++ G+ G+ GESG GKS T + L L
Sbjct: 18 AFLSVRDLKVHFSTEGGVVKAVDGLSFDLERGKTLGIVGESGSGKSVTNLAVLGLHDRRR 77
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GS G++L +L K++ ++++I Q A+ AL+P + + + +H
Sbjct: 78 TAIDGSITLDGQELTDASEKQLEKLRGKKMAMIFQDALTALSPYYTVGRQIAEPFMKHNG 137
Query: 121 ADRREVE----ELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
A +++ +LL +++ + RV D YP + SGG+ QRA + ++ NPDLLIADE
Sbjct: 138 ASKKDARCGAIDLL-QKVGIPHPQKRVDD-YPHQFSGGIGQRAMIAMALSCNPDLLIADE 195
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T+ALDVT Q +++LL QE +II +THDL ++ +AD +MVMYAG+ VE G +
Sbjct: 196 PTTALDVTVQAQILDLLKDLQQE-FASAIIMITHDLGVVGNMADDIMVMYAGRAVERGTV 254
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPF---- 292
EVL++P HPYT LL+S+P + E L IPG P SL+NPP GC F+ RC F
Sbjct: 255 REVLKSPQHPYTWGLLSSMPNLTSDVD-EPLMPIPGSPPSLMNPPSGCAFHPRCGFTDLV 313
Query: 293 AMEDCRDVEPKLVKVGRDHYAACHLLGGE 321
+ E C P L AACHL G +
Sbjct: 314 SGERCSGERPTL---PHGRAAACHLTGDQ 339
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 206 bits (518), Expect = 4e-52
Identities = 126/324 (38%), Positives = 191/324 (58%), Gaps = 13/324 (4%)
Query: 3 LLDVRNLRVYYRTPV--GY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
LL+V+NL + + + GY VRAVD V+F + EGE+ + GESG GK+T + LILR
Sbjct: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTT-IGKLILRL-- 58
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
++ G +FKG D+ S +D+L Y + + Q + NP ++ D V+DL
Sbjct: 59 IKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKV-DRVFDLVFRTF 117
Query: 120 YADRREVE--ELLRERLSMVKLSPR-VADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
+ +VE EL+R L V L+PR + +P +LSGG QR + + L+ P LLIADE
Sbjct: 118 LKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADE 177
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
S LD +T+ V+ LL F ++ S+IF+THDLAL I+D++++MY G +VE G
Sbjct: 178 AVSMLDASTRIDVLNLLGEF-RDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDT 236
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
E+V +NP HPYT++LL S+P + V ++ + + P + KGC+F RC A +
Sbjct: 237 EKVFDNPLHPYTKMLLESVPDLNVKWEFKGIE--PEREEGKVWELKGCKFAPRCSLAKDK 294
Query: 297 CRDVEPKLVKVGRDHYAACHLLGG 320
C + P+ V+V ++H+ ACHL GG
Sbjct: 295 CWKIRPEPVEVEKNHWVACHLYGG 318
>gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport protein D [Thermotoga
maritima]
Length = 277
Score = 205 bits (515), Expect = 8e-52
Identities = 108/266 (40%), Positives = 171/266 (63%), Gaps = 10/266 (3%)
Query: 3 LLDVRNLRVYYRTPVG----YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRK 57
L+ +NL+ YY + V+AVD VS ++ E++G+AGESGCGKSTL+ +L+ L
Sbjct: 4 LISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLALLD 63
Query: 58 PPMEYKGGSAIF--KGR--DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
PP+ G ++ +GR ++ L + +RK+++S +S IPQ +M+ LNP KR++D +
Sbjct: 64 PPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDTFIE 123
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
+ H +E +L + L + L RV +M+P +LSGGMRQR T+ ++T+L P ++
Sbjct: 124 ILSSHVKKQTKEFLDLAVQHLKDLGLPERVLNMFPHQLSGGMRQRVTIALATVLKPRVIF 183
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE T+ALDV QR V++L+ +Q + +++ VTHD+ + QI R+ +MYAGK+VE
Sbjct: 184 ADEPTTALDVVAQRAVMQLIRK-IQNDLKNTVVLVTHDMGVHAQITTRMAIMYAGKIVEE 242
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMG 259
GP E+ +NP HPYT+ L+ SLP +G
Sbjct: 243 GPTLEIFKNPLHPYTRYLIQSLPAIG 268
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 204 bits (514), Expect = 1e-51
Identities = 125/321 (38%), Positives = 190/321 (58%), Gaps = 13/321 (4%)
Query: 3 LLDVRNLRVYYRTPV--GY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
LL+V+NL + + + GY VRAVDGVSF + EGE+ + GESG GK+T + LILR
Sbjct: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTT-IGKLILRL-- 58
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
+ G +F+G+D+M + EL+ Y ++ + Q + NP ++ D V+ + +
Sbjct: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSY 117
Query: 120 YAD--RREVEELLRERLSMVKLSP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
+ D R E EE++ + L V L+P V YP +LSGG QR + + LL P LLIADE
Sbjct: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
S LD +T+ V+ LL F ++ S++F+THDLAL I+D ++MY G +VE+G
Sbjct: 178 AVSMLDASTRIDVLNLLGEF-RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
E+V NP HPYT++LL S+P + V ++ + + P + KGCR+ RCP A +
Sbjct: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE--PEKEEGKVWKIKGCRYAPRCPKAKDV 294
Query: 297 CRDVEPKLVKVGRDHYAACHL 317
C + P L++V ++H+ ACHL
Sbjct: 295 CFKIRPTLIEVEKNHWVACHL 315
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 204 bits (513), Expect = 1e-51
Identities = 121/319 (37%), Positives = 178/319 (54%), Gaps = 9/319 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI--LRKPPM 60
LL V NL V + TP G V A +GVS ++ GE G+ GESG GKS L +L+ L PP
Sbjct: 6 LLSVDNLNVTFSTPRGNVVANNGVSLQIAGGETLGIVGESGSGKSVLCRALLGLLPSPPA 65
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH-- 118
+ +F GR+++SL E+R ++ E+S++ Q M++LNP I D + + R H
Sbjct: 66 TIRADRLVFAGRNMLSLTAAEMRAVRGQEISMVFQNPMSSLNPVWPIGDQISEGLRVHRG 125
Query: 119 -GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
G A R R+ + RV D YP + SGGM QRA + ++ + P LL+ADE
Sbjct: 126 IGNAQARSAAIAALRRVGIPSPEIRVDD-YPHQWSGGMAQRAVIAMAMIGEPKLLLADEP 184
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDVT Q ++ LL +E + +I+ V+HD++++ + D V VMYAG VVE G
Sbjct: 185 TTALDVTIQDQILSLLMQLQRETGM-AIVLVSHDMSVISETCDNVAVMYAGGVVETGRTT 243
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
++ P+HPYT LLNS+P + + ++L+ IPG P L GC F+ RC A +C
Sbjct: 244 DIFRTPSHPYTAGLLNSIP--PIKGRADKLASIPGQPPDLARLGPGCPFFERCSVASAEC 301
Query: 298 RDVEPKLVKVGRDHYAACH 316
+ L ++ ACH
Sbjct: 302 QTRPVALKRLASGQQTACH 320
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 203 bits (511), Expect = 2e-51
Identities = 119/334 (35%), Positives = 191/334 (56%), Gaps = 22/334 (6%)
Query: 3 LLDVRNLRVYYRT-----------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVH 51
+L V NL+ Y+ P +VRAVDG+SFEV + +VF + GESGCGK+T
Sbjct: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
Query: 52 SLILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIV 111
++ P + G +G+D+ L E K + +I Q +++NP RI D++
Sbjct: 65 LVVKLLEPTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
Query: 112 WDLAREHGYADRR-EVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLN 168
+ HG + R E EEL+ + L MVK++P +P LSGG RQR + + +LN
Sbjct: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
Query: 169 PDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAG 228
P ++ADE S LDV+ + ++EL+ ++E + + +++THDL+ R AD + VMY G
Sbjct: 182 PTFIVADEPVSMLDVSIRAEILELMKE-LKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
Query: 229 KVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIP--GYPISLLNPPKGCRF 286
++VE+GP +EV++NP HPYT+ LL ++P + +++ + +P G S +N P GCRF
Sbjct: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPE-PIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
Query: 287 YTRCPFAMED-CRDVEPKLVKVGRDHYAACHLLG 319
+ RC + + C EPKL++ +H+ CH +G
Sbjct: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
>pir||T35982 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464267|emb|CAB37470.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 398
Score = 203 bits (510), Expect = 3e-51
Identities = 120/319 (37%), Positives = 172/319 (53%), Gaps = 4/319 (1%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M+LL+VR+L+V Y G AV GV + GE GVAGESGCGKSTL +L+ PP
Sbjct: 1 MSLLEVRDLKVTYP---GGAAAVRGVDLTLAAGEKLGVAGESGCGKSTLALALLRLLPPG 57
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GG + G D++++ +R ++++ SI+ Q AM++LN R+ D + + H
Sbjct: 58 ARVGGEILLDGEDVLTMKWGRVRAVRWAGASIVFQGAMHSLNAVHRVGDQIAEPILLHRR 117
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
E L V L A YP ELSGG RQR + ++ +P L++ADE T+A
Sbjct: 118 TTAAGARRRAGELLEQVGLPAARASAYPHELSGGQRQRVMIAMALACDPRLIVADEPTTA 177
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDV Q ++ L+ + E V +I ++HDLA+L DR+ VMYAG+VVE GP +V
Sbjct: 178 LDVMIQAQILRLIEGLVGEQDV-GLIMISHDLAVLADTCDRLAVMYAGRVVEEGPARQVY 236
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
++ HPY + L + P +G R G+PG P P GC F+ RCP A++ C
Sbjct: 237 DDARHPYGRALSEAFPTIGDPASRFAPRGLPGDPPDPAAVPSGCAFHPRCPVALDLCATQ 296
Query: 301 EPKLVKVGRDHYAACHLLG 319
+ L G AAC +G
Sbjct: 297 DQPLRDAGARRRAACVHVG 315
>gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-binding; AppF
[Halobacterium sp. NRC-1]
Length = 440
Score = 202 bits (509), Expect = 4e-51
Identities = 117/297 (39%), Positives = 172/297 (57%), Gaps = 13/297 (4%)
Query: 2 ALLDVRNLRVYY-------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
+L+ V L+ +Y RT VG VRAVDGVSFEV GE G+ GESGCGKST+ S++
Sbjct: 15 SLMRVDGLKKHYPITEGVLRTEVGRVRAVDGVSFEVRAGETLGIVGESGCGKSTVAESVL 74
Query: 55 LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
P GS F G D+ + L++ + E +I Q ++ +P + V +
Sbjct: 75 RLTDPT---AGSVYFDGEDVTAYDDTALKRFR-REAQMIFQNPDSSFDPRMTTGESVAEP 130
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
+ HG R E+ R+ L V +S A YP ELSGG +QR + + ++NP L++A
Sbjct: 131 LKIHGVGPRSRRLEIARDLLERVGMSGEDAARYPHELSGGQKQRVALARALVVNPRLIVA 190
Query: 175 DEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
DE SALDV+ Q V+ LL+ E + ++F++HD+ ++R++ DRV VMY G++VE+G
Sbjct: 191 DEPVSALDVSVQAEVLTLLNDIQAEFNL-GVLFISHDMGVVREVCDRVAVMYLGEIVEMG 249
Query: 235 PMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
E+V +P HPYT+ LL S+P +GV R +G+ G +PP GC F+TRCP
Sbjct: 250 RTEDVFNDPEHPYTRALLRSIPTVGVE-SRGTDAGLRGEVPPPSDPPTGCNFHTRCP 305
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 202 bits (508), Expect = 5e-51
Identities = 121/321 (37%), Positives = 187/321 (57%), Gaps = 13/321 (4%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
LL+V+NL Y+ T G ++AV GV F + G+ G+ GESG GKS S++ L + P +
Sbjct: 5 LLEVKNLHTYFFTNKGTIKAVQGVDFTIEAGKTLGIVGESGSGKSITAFSILNLLEYPGK 64
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G F G +L++L + E+RKI+ +++S+I Q M +LNP RI + + H +
Sbjct: 65 IVQGEINFGGINLVNLGKKEIRKIRGNDISMIFQEPMTSLNPVHRIGRQLSEPLILHQHM 124
Query: 122 DRREVEELLRERLSMVKLS--PRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
++E + L VK+ V YP +LSGGMRQR + ++ P LLIADE T+
Sbjct: 125 SKKEAWAAAIDLLREVKIPNPENVVYNYPFQLSGGMRQRVMIAMALACKPRLLIADEPTT 184
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALDVT Q + +L++ ++ +I+F+THDL + ++AD V VMY G++VE P++ +
Sbjct: 185 ALDVTIQAQIFKLMNDLKKKHNT-AIMFITHDLGAIAELADDVAVMYTGEIVERAPVDVI 243
Query: 240 LENP---AHPYTQLLLNSLPRMG--VHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAM 294
+ +HPY + LL S+P + V Y + +P +P+ L PKGCRF TRC +A
Sbjct: 244 FDRQTQFSHPYKEGLLESIPLLDEEVEYLAQIQGSVP-HPLKL---PKGCRFSTRCEYAT 299
Query: 295 EDCRDVEPKLVKVGRDHYAAC 315
E CR+ +P+LV+V H C
Sbjct: 300 EKCRNEKPELVEVEEGHLIRC 320
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 202 bits (508), Expect = 5e-51
Identities = 124/319 (38%), Positives = 183/319 (56%), Gaps = 9/319 (2%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPM 60
ALL +RNL ++ + AVD V+ V + EV + GESG GKS L ++++ L P
Sbjct: 5 ALLQIRNLTTAFQIKDDFYAAVDNVTLNVNKNEVLAIVGESGSGKSALANTIMGLHNPER 64
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G FKG +L+ LP +L KI+ +LS+I Q + ALNP I + + + H
Sbjct: 65 TKIEGEINFKGENLVKLPVSKLNKIRGDKLSMIFQDPLTALNPLMIIGEQIGEALLLHRS 124
Query: 121 ADRREVEELLRERLSMVKLSPR---VADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+ E ++ + + L++V + PR + YP ELSGGMRQR + + P+ LIADE
Sbjct: 125 LTKAERKKKVIDLLNLVGI-PRPESTYEQYPHELSGGMRQRVMIAAAIACEPEFLIADEP 183
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDVT Q +++L+ ++E I II +THDL ++ ++ADRV VMYAG++VEI +
Sbjct: 184 TTALDVTIQAQILDLIRD-LKEKIHAGIILITHDLGVVAEMADRVAVMYAGQIVEIADVF 242
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLN-PPKGCRFYTRCPFAMED 296
+ E P HPYT+ LLNS+P +E+L I G +L N P KGCRF R P+ E
Sbjct: 243 TLFERPLHPYTRSLLNSVP--SESNDQEKLHVIQGIVPALQNLPRKGCRFKDRIPWLSES 300
Query: 297 CRDVEPKLVKVGRDHYAAC 315
+ P+L +V H+ C
Sbjct: 301 AHEDHPELHEVEPGHFVRC 319
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 201 bits (506), Expect = 9e-51
Identities = 126/325 (38%), Positives = 177/325 (53%), Gaps = 17/325 (5%)
Query: 2 ALLDVRNLRVYY-------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
ALL V +L +Y +T V VRAV+ VSF V GE V GESGCGKSTL L+
Sbjct: 4 ALLKVESLTKHYPIEAGWFKTNVPVVRAVEDVSFTVQAGETLCVVGESGCGKSTLARLLM 63
Query: 55 LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
P G + +G D+ L ++ELR + + ++ Q ++LNP I+ +
Sbjct: 64 RLIDPTS---GRVLVEGTDIAGLRKNELRAWR-RRMQMVFQDPYSSLNPRLTAGQIITEP 119
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
RR+ +EL + L V +SP +A YP E+SGG RQR + + L P L+IA
Sbjct: 120 VENFECLSRRQRQELATDLLRKVGMSPEMASRYPSEMSGGQRQRLGIARALALKPSLIIA 179
Query: 175 DEITSALDVTTQRVVIELLHHFMQE-GIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE SALDV+ Q ++ LL QE GI ++IF++HDLA++ I RV VMY G++VE+
Sbjct: 180 DEAVSALDVSVQAQILNLLMDLQQETGI--ALIFISHDLAVVEHIGHRVAVMYLGRIVEL 237
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLS-GIPGYPISLLNPPKGCRFYTRCPF 292
P + + P HPYT+ L+ + P R RL + G S +NPP GC F+ RCP
Sbjct: 238 SPRDALFAKPVHPYTEALIAAAPVPDP--ARARLEVPLEGEVPSPVNPPSGCAFHPRCPL 295
Query: 293 AMEDCRDVEPKLVKVGRDHYAACHL 317
A++ CR P LV + ACH+
Sbjct: 296 AVDRCRAEVPPLVPMPDGRAVACHV 320
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 200 bits (504), Expect = 2e-50
Identities = 112/302 (37%), Positives = 178/302 (58%), Gaps = 7/302 (2%)
Query: 5 DVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKG 64
D++ + ++ P ++AVDGV+ + EGE GV GESGCGKST ++I ++
Sbjct: 22 DIKEGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII---GLVKATD 78
Query: 65 GSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLARE-HGYADR 123
G + G+DL+ + DE R+++ S++ +I Q + +LNP I +I+ + R H R
Sbjct: 79 GKVAWLGKDLLGMKADEWREVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSR 137
Query: 124 REVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDV 183
++V + ++ + V L P + + YP E SGG QR + + +L P L+I D+ SALDV
Sbjct: 138 QDVRDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDDAVSALDV 197
Query: 184 TTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENP 243
+ Q V+ LL +E + S+IF+ HDLA+++ I+DRV+VMY G VE+G +EV NP
Sbjct: 198 SIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 256
Query: 244 AHPYTQLLLNSLPRMGVHYKR-ERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEP 302
HPYT+ L++++P +R +++ + G S +NPP GC F TRCP A +C P
Sbjct: 257 LHPYTKALMSAVPIPDPDLERNKKIQLLEGELPSPINPPSGCVFRTRCPIAGPECAQTRP 316
Query: 303 KL 304
L
Sbjct: 317 VL 318
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 200 bits (504), Expect = 2e-50
Identities = 116/334 (34%), Positives = 193/334 (57%), Gaps = 22/334 (6%)
Query: 3 LLDVRNLRVYYRT-----------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVH 51
+L V NL+ Y+ P +V+AVDGVSFE+ + +VF + GESGCGK+T
Sbjct: 5 ILKVENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKTTTGK 64
Query: 52 SLILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIV 111
++ P + G +G+D+ L E K ++ +I Q +++NP RI D++
Sbjct: 65 LIVKLLEPTD---GKIYLEGQDVTELRTKEEIKAYRRKVQMIFQDPFSSMNPRFRIYDVL 121
Query: 112 WDLAREHGYADRR-EVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLN 168
+ HG + R E EEL+ + L MVK++P +P LSGG RQR + + +LN
Sbjct: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
Query: 169 PDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAG 228
P ++ADE S LDV+ + ++EL+ ++E + + +++THDL+ R AD + VMY G
Sbjct: 182 PTFVVADEPVSMLDVSIRAEILELMKE-LKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
Query: 229 KVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIP--GYPISLLNPPKGCRF 286
++VE+GP +E+++NP HPYT+ LL ++P + +++ + +P G S +N P GCRF
Sbjct: 241 RIVEMGPAKEIIDNPLHPYTRALLAAVPE-PIPERKDVIKELPIKGEVPSAVNIPSGCRF 299
Query: 287 YTRCPFAMEDCRDV-EPKLVKVGRDHYAACHLLG 319
+ RC + + DV +P+L++ +H+ CH +G
Sbjct: 300 HPRCIYFKKGLCDVKQPQLIEYSHNHWVECHRVG 333
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 200 bits (504), Expect = 2e-50
Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 32/328 (9%)
Query: 3 LLDVRNLRVYY------------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLV 50
+ ++N++ YY + P YVRA+D VS + +G V GV GESG GKST+
Sbjct: 4 IYSLKNVKKYYLAQKRGLIDALVKVPKIYVRALDDVSISIMDGNVIGVVGESGSGKSTMG 63
Query: 51 HSLILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDI 110
++ + P + G FKG + ++RK ++ ++ Q +LNP ++KDI
Sbjct: 64 KVMVTLETPTD---GELYFKGTRVTKSEYPKIRK----QVDMVFQNPATSLNPKMKVKDI 116
Query: 111 VWDLAREHGYADRREVEELLRERLSMVKLS-PRVADMYPVELSGGMRQRATMVVSTLLNP 169
V + G+ D ++E++ + V LS V D ELSGG QR + + + P
Sbjct: 117 V---SEPLGHFDEGAIKEVILK----VGLSYDEVKDKQSRELSGGQVQRVAIARALMKKP 169
Query: 170 DLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
+LL+ DE TSALD + Q V+ LL E + IF+TH++ + + I+D ++V+YAGK
Sbjct: 170 ELLVLDEPTSALDESIQAQVLNLLVDLQTE-YKMTYIFITHNILVAKYISDYIVVLYAGK 228
Query: 230 VVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTR 289
+VE GP EVL P HPYTQLLL+S+P + V + + +P SL+N P+GCRF R
Sbjct: 229 IVEYGPTSEVLSKPLHPYTQLLLSSVPTVDVKDVKPPVGDVP----SLINLPQGCRFNPR 284
Query: 290 CPFAMEDCRDVEPKLVKVGRDHYAACHL 317
CPF ME CR EP L+ G+++ AC L
Sbjct: 285 CPFVMEKCRKEEPPLISQGQNYQVACWL 312
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 200 bits (503), Expect = 2e-50
Identities = 119/319 (37%), Positives = 181/319 (56%), Gaps = 7/319 (2%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
MALLDV+ L V++ +AVD +S++V +GEV G+ GESG GKS +++ L P
Sbjct: 1 MALLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHP 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
S F+ DL++L R++ +++++I Q M +LNP + + + + H
Sbjct: 61 GRVSAESLQFENTDLLTLESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHE 120
Query: 120 YADRREVEELLRERLSMVKLSPRVA--DMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
++ ++ E L +V + + D+YP +LSGGM QR + ++ P LLIADE
Sbjct: 121 GGTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDVT Q ++ELL +Q+ S+I +THDLAL+ + A+R++VMYAG++VE G +
Sbjct: 181 TTALDVTIQAQIMELLLE-LQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAK 239
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
++ P HPYTQ LL SLP + RL + G + P GC RCP+A E C
Sbjct: 240 DIFREPKHPYTQALLRSLPEFA--EGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYC 297
Query: 298 RDVEPKLVKVGRDHYAACH 316
R VEP+L +G CH
Sbjct: 298 RQVEPQLHHIG-SRKVKCH 315
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 198 bits (497), Expect = 1e-49
Identities = 117/313 (37%), Positives = 179/313 (56%), Gaps = 16/313 (5%)
Query: 3 LLDVRNLRVYYRT---------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL 53
LL++ +L+V++ P ++AVDGV+ + EGE GV GESGCGKST ++
Sbjct: 11 LLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 70
Query: 54 ILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
I ++ G + G++L+ + DE R ++ S++ +I Q + +LNP I +I+ +
Sbjct: 71 I---GLVKATDGHVAWLGKELLGMKPDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAE 126
Query: 114 LARE-HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
R H R+EV E ++ + V L P + + YP E SGG QR + + +L P L+
Sbjct: 127 PLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLI 186
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
I DE SALDV+ Q V+ LL +E + S+IF+ HDLA+++ I+DRV+VMY G VE
Sbjct: 187 ICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 245
Query: 233 IGPMEEVLENPAHPYTQLLLNSLPRMGVHY-KRERLSGIPGYPISLLNPPKGCRFYTRCP 291
+G +EV NP HPYT+ L++++P K + + + G S +NPP GC F TRCP
Sbjct: 246 LGTYDEVYHNPLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCP 305
Query: 292 FAMEDCRDVEPKL 304
A +C P L
Sbjct: 306 IAGPECAKTRPVL 318
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 196 bits (494), Expect = 2e-49
Identities = 117/286 (40%), Positives = 168/286 (57%), Gaps = 16/286 (5%)
Query: 40 GESGCGKSTLVHSL--ILRKPPMEYKGGSAIFKGR----DLMSLPRDELRKIQYSELSII 93
GESGCGKSTL S+ IL + KG + G DL+ L DEL KI+ +S+I
Sbjct: 2 GESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMI 61
Query: 94 PQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLS--MVKLSPRVADMYPVEL 151
Q AL+P ++K V D H ++R VE++ +E L M+ + + YP EL
Sbjct: 62 FQDPSAALSPVHKVKKQVTD----HVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHEL 117
Query: 152 SGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHD 211
SGGM+QR + S + P ++IADE T+ALDVT Q ++++L +E + +II +TH+
Sbjct: 118 SGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREE-LETTIILITHN 176
Query: 212 LALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIP 271
LA+ +IADR+ VMYAG VVE+ + + E P HPYT+ LL S+P+ V E + I
Sbjct: 177 LAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPHVD---EEIEPIR 233
Query: 272 GYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAACHL 317
G P SL +PP GCRF+ RCP+ M+ C ++P+L + ACHL
Sbjct: 234 GEPPSLADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHL 279
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 195 bits (491), Expect = 5e-49
Identities = 115/320 (35%), Positives = 182/320 (55%), Gaps = 13/320 (4%)
Query: 3 LLDVRNLRVYYRTPVGY------VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
+L R+L +Y G VRA++GVSFE+ G+ V GESGCGKSTL +L L
Sbjct: 4 VLTARDLTRHYEVSRGLFKGHAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLI 63
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
+ P GS G+++ +D+ R+++ ++ ++ Q +LNP ++I D + +
Sbjct: 64 EEPTS---GSLKIAGQEVKGASKDQRRQLR-RDVQMVFQNPYASLNPRQKIGDQLAEPLL 119
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
+ R E E +++ + V L P YP SGG RQR + + +L P +L+ADE
Sbjct: 120 INTALSREERREKVQQMMRQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVADE 179
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
TSALDV+ Q V+ L Q+ + +F++H+LA++R +AD V+VMY G+ E+GP
Sbjct: 180 PTSALDVSIQAQVLNLFMDLQQQ-FRTAYVFISHNLAVVRHVADDVLVMYLGRPAEMGPA 238
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
+++ ENP HPYT+ LL++ P + + ++ I G + LNPP+GC F+ RCP+A E
Sbjct: 239 DKLYENPLHPYTRALLSATPAIHPDPTKPKIR-IQGELPNPLNPPEGCAFHKRCPYATER 297
Query: 297 CRDVEPKLVKVGRDHYAACH 316
CR P+L ++ ACH
Sbjct: 298 CRSEVPEL-RLLDQRQVACH 316
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 195 bits (490), Expect = 7e-49
Identities = 115/319 (36%), Positives = 177/319 (55%), Gaps = 12/319 (3%)
Query: 3 LLDVRNLRVYYRTPVGY------VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
LL+ L+ YY G V+A+DGVSF++ G+ V GESGCGKSTL L +
Sbjct: 11 LLNAIGLKKYYPVKKGLFAKPQQVKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLTMI 70
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
+ P + G +KG + + E + ++ ++ I+ Q +LNP K+I I+ +
Sbjct: 71 EEPTK---GELYYKGHNFLEND-SETKALRRKKIQIVFQNPYASLNPRKKIGSILEEPLI 126
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
+ +E E + + V L D YP SGG RQR + +L+PD+++ADE
Sbjct: 127 INTKLSAKERREKVLSMMEKVGLRAEFYDRYPHMFSGGQRQRIAIARGLMLDPDVVVADE 186
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
SALDV+ + V+ L+ +Q+ + S +F++HDL+++ IAD VMVMY G+ +E G
Sbjct: 187 PVSALDVSVRAQVLNLMMD-LQDELGLSYVFISHDLSVVEHIADEVMVMYLGRCIEKGTT 245
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
E++ NP HPYT+ LL++ PR+ + +RER+ + G S +NPPKGC F RC A E
Sbjct: 246 EQIFSNPQHPYTKALLSATPRLSPNLRRERIK-LTGELPSPINPPKGCAFNPRCWKATEK 304
Query: 297 CRDVEPKLVKVGRDHYAAC 315
CR+ +P L + AC
Sbjct: 305 CRENQPHLEQHTDGKLIAC 323
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 195 bits (490), Expect = 7e-49
Identities = 119/305 (39%), Positives = 174/305 (57%), Gaps = 13/305 (4%)
Query: 17 VGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMS 76
VG VRAVDG+ FEV GE GV GESGCGKST+ LI R +E G F+G+D+
Sbjct: 60 VGAVRAVDGIDFEVRSGETLGVVGESGCGKSTMGR-LITRL--LEPTAGKVEFQGKDITH 116
Query: 77 LPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLSM 136
L +R ++ ++ +I Q ++LNP I IV + G V++ ++ LS+
Sbjct: 117 LGVGGMRPLR-RDVQMIFQDPYSSLNPRHTIGTIVSAPFKLQGVQPEGGVKKEVQRLLSV 175
Query: 137 VKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHF 196
V L+P + YP E SGG RQR + + LNP L++ADE SALDV+ Q V+ LL
Sbjct: 176 VGLNPEHYNRYPHEFSGGQRQRIGIARALALNPRLVVADEPVSALDVSIQAQVVNLLDDL 235
Query: 197 MQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLP 256
QE + + + + HDL+++R ++DR+ VMY GK++E+ + + + P HPYT+ L++++P
Sbjct: 236 QQE-LGLTYVIIAHDLSVVRHVSDRIAVMYLGKIMELADRDLLYKTPMHPYTKALMSAVP 294
Query: 257 -----RMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDH 311
R G +R L G PI+ PP GCRF+TRC A + C EP L ++
Sbjct: 295 IPDPARRGAKSERILLKGDVPSPIA---PPSGCRFHTRCWKATQVCTTTEPPLKELRPGQ 351
Query: 312 YAACH 316
ACH
Sbjct: 352 QVACH 356
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 195 bits (490), Expect = 7e-49
Identities = 114/324 (35%), Positives = 189/324 (58%), Gaps = 17/324 (5%)
Query: 3 LLDVRNLRVYYR---------TPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL 53
LLDV++L+V++ T ++AVDGV+ + EGE GV GESGCGKST ++
Sbjct: 14 LLDVKDLKVHFNITPKSAWPWTKPVTLKAVDGVNVRLYEGETLGVVGESGCGKSTFARAI 73
Query: 54 ILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
I ++ G ++ G+DL + ++ R+ ++ +I Q + +LNP + DI+ +
Sbjct: 74 I---GLVQATHGEVVWLGQDLTRM-QEVKRRATRKQIQMIFQDPLASLNPRMTVGDIIAE 129
Query: 114 -LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
L + ++EV++ ++E ++ V L P V + YP E SGG QR + + +L P ++
Sbjct: 130 PLQTFYPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMI 189
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
I DE SALDV+ Q V+ LL +E + S++F+ HDL++++ I+DRV+VMY G VE
Sbjct: 190 ICDEPVSALDVSIQAQVVNLLKELQKE-LGLSLVFIAHDLSVVKHISDRVLVMYLGNAVE 248
Query: 233 IGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRER-LSGIPGYPISLLNPPKGCRFYTRCP 291
+G +E+ NP HPYT+ L++++P + +R + + + G S +NPP GC F TRCP
Sbjct: 249 LGVSKELFANPKHPYTKALMSAVPIPDPNIERNKTIQMLEGDLPSPMNPPSGCVFRTRCP 308
Query: 292 FAMEDCRDVEPKLVKVGRDHYAAC 315
A +C +P ++K H +C
Sbjct: 309 QATAECAKTKP-VIKGSDIHSVSC 331
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 194 bits (488), Expect = 1e-48
Identities = 116/319 (36%), Positives = 174/319 (54%), Gaps = 6/319 (1%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
MALL+V L V++ RAVD +S+ V +GEV G+ GESG GKS +++ L P
Sbjct: 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
F G+DL + E R + +E+++I Q M +LNP + + + + H
Sbjct: 61 GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ 120
Query: 120 YADRREVEELLRERLSMVKLSPRVA--DMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
++ + + L+ V + + D+YP +LSGGM QR + ++ P LLIADE
Sbjct: 121 GGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDVT Q +IELL Q+ + +++ +THDLAL+ + A +++VMYAG+VVE G
Sbjct: 181 TTALDVTIQAQIIELLLELQQKENM-ALVLITHDLALVAEAAHKIIVMYAGQVVETGDAH 239
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
+ P HPYTQ LL +LP +ERL+ +PG + P GC RCP+A + C
Sbjct: 240 AIFHAPRHPYTQALLRALPEFA--QDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRC 297
Query: 298 RDVEPKLVKVGRDHYAACH 316
R EP L + + CH
Sbjct: 298 RAEEPALNMLADGRQSKCH 316
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 193 bits (486), Expect = 2e-48
Identities = 120/313 (38%), Positives = 179/313 (56%), Gaps = 9/313 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
LL+V NL+ Y+ + AVDGV F + +GE + GESG GKS S+ +++
Sbjct: 4 LLEVNNLKTYFFRKKEPIPAVDGVDFHISKGETVALVGESGSGKSITSLSIMGLVQSSGG 63
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+ GS + +DL S ++ KI+ +E+S+I Q M +LNP I + + ++ H
Sbjct: 64 KIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGEQITEVLIYHKN 123
Query: 121 ADRREVEELLRERLSMVKLS--PRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
++E + E L MV S ++ YP LSGGMRQR + ++ NP LLIADE T
Sbjct: 124 MKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSCNPKLLIADEPT 183
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q V+EL+ Q+ SI+ +THDL ++ + ADRV+VMY G+VVE +++
Sbjct: 184 TALDVTIQAQVLELMKDLCQK-FNTSILLITHDLGVVSEAADRVIVMYCGQVVENATVDD 242
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ P HPYT+ LL S+P + + ++L+ I G + N P GCRF RCP AM+ C
Sbjct: 243 LFLEPLHPYTEGLLTSIPV--IDGEIDKLNAIKGSVPTPDNLPPGCRFAPRCPKAMDKCW 300
Query: 299 DVEPKLV--KVGR 309
+P L+ K GR
Sbjct: 301 TNQPSLLTHKSGR 313
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 192 bits (483), Expect = 5e-48
Identities = 115/298 (38%), Positives = 166/298 (55%), Gaps = 8/298 (2%)
Query: 19 YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSLP 78
YV+AVD V+ + G+ G+ GESG GK+T ++ + P GG F G D+M L
Sbjct: 51 YVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPT---GGRIFFDGIDVMKLR 107
Query: 79 RDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLSMVK 138
L++ + II Q +LNP K I +++ + + HG +++E + L V
Sbjct: 108 GRGLKEFR-RRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVG-DLQEYIVSLLYQVG 165
Query: 139 LSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQ 198
L+ YP E SGG RQR + L P+ ++ DE TSALDV+ Q ++ LL +Q
Sbjct: 166 LNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKD-LQ 224
Query: 199 EGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRM 258
+ +F++HDL ++R ++D + VMY GK+VE G EEV E P HPYT++LL S+P
Sbjct: 225 RKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIPVP 284
Query: 259 GVHY-KRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAAC 315
KR I G P S +NPP GCRF TRCP A++ C + EP L +V R H+ AC
Sbjct: 285 DPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKCLE-EPPLEEVERGHWVAC 341
>gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 191 bits (481), Expect = 8e-48
Identities = 109/293 (37%), Positives = 165/293 (56%), Gaps = 6/293 (2%)
Query: 16 PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLM 75
P V+A+DGVSF + G+ V GESGCGKSTL L + + P GG ++G+DL+
Sbjct: 31 PERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPT---GGELYYQGQDLL 87
Query: 76 SLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLS 135
+ +K++ ++ I+ Q +LNP K++ I+ + + + + E ++
Sbjct: 88 KHD-PQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMA 146
Query: 136 MVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHH 195
V L D YP SGG RQR + +L+PD++IADE SALDV+ + V+ L+
Sbjct: 147 KVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMD 206
Query: 196 FMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSL 255
QE + S +F++HDL+++ IAD VMVMY G+ VE G +++ NP HPYTQ LL++
Sbjct: 207 LQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSAT 265
Query: 256 PRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVG 308
PR+ +RER+ + G S LNPP GC F RC C ++P+L G
Sbjct: 266 PRLNPDDRRERIK-LSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYG 317
>sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1073370|pir||S47762 dipeptide transport protein dppF
- Escherichia coli >gi|466679|gb|AAB18518.1| (U00039)
was dppE [Escherichia coli] >gi|1789962|gb|AAC76565.1|
(AE000431) putative ATP-binding component of dipeptide
transport system [Escherichia coli K12]
Length = 334
Score = 191 bits (481), Expect = 8e-48
Identities = 109/293 (37%), Positives = 165/293 (56%), Gaps = 6/293 (2%)
Query: 16 PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLM 75
P V+A+DGVSF + G+ V GESGCGKSTL L + + P GG ++G+DL+
Sbjct: 31 PERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPT---GGELYYQGQDLL 87
Query: 76 SLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLS 135
+ +K++ ++ I+ Q +LNP K++ I+ + + + + E ++
Sbjct: 88 KHD-PQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMA 146
Query: 136 MVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHH 195
V L D YP SGG RQR + +L+PD++IADE SALDV+ + V+ L+
Sbjct: 147 KVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMD 206
Query: 196 FMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSL 255
QE + S +F++HDL+++ IAD VMVMY G+ VE G +++ NP HPYTQ LL++
Sbjct: 207 LQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSAT 265
Query: 256 PRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVG 308
PR+ +RER+ + G S LNPP GC F RC C ++P+L G
Sbjct: 266 PRLNPDDRRERIK-LSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYG 317
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 189 bits (476), Expect = 3e-47
Identities = 123/323 (38%), Positives = 177/323 (54%), Gaps = 41/323 (12%)
Query: 3 LLDVRNLRVYY-----------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVH 51
+L V +LRV++ P +V+AVDGVSF + GEVF + GESGCGK+T
Sbjct: 19 VLRVEDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTT-TG 77
Query: 52 SLILRKPPMEYKGGSAIFKGR--------------------DLMSLPRDELRKIQYSELS 91
ILR ++ GG FK + DL+++PR + + ++ EL
Sbjct: 78 KAILRL--VKATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLR-RELQ 134
Query: 92 IIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLSMVKLSPR--VADMYPV 149
I+ Q +LNP IK I+ D H + RE EE++ L VKL+P D YP
Sbjct: 135 IVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAREREEMVARMLEAVKLTPASDFMDRYPH 194
Query: 150 ELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVT 209
+LSGG RQR + + +LNP L++ADE S LDV+ + ++ELL F +E + S++F+T
Sbjct: 195 QLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGF-REKLGTSLLFIT 253
Query: 210 HDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSG 269
HDLA+ R I DR+ VMY GK+VE G ++E P HPYT+ L+ ++P R++L
Sbjct: 254 HDLAVARYICDRIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPS-NRKKLRE 312
Query: 270 IP--GYPISLLNPPKGCRFYTRC 290
+P G S P GCRF+ RC
Sbjct: 313 VPIKGEIPSAAAIPPGCRFHPRC 335
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 189 bits (476), Expect = 3e-47
Identities = 124/336 (36%), Positives = 181/336 (52%), Gaps = 31/336 (9%)
Query: 3 LLDVRNLRVYY--------RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
+L+VR L +Y + VG V+AVDGV F + GE G+ GESGCGKST+ L+
Sbjct: 8 ILEVRGLVKHYPLTSGILFKKQVGAVKAVDGVDFRLARGETLGIVGESGCGKSTVAKMLV 67
Query: 55 LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
+ P G +KG D+ L L+ ++ + + ++ Q +LNP + DI+ +
Sbjct: 68 NLERPT---AGEIRYKGEDITRLSGRALKSVRRN-IQMVFQDPYTSLNPRMTVGDIIGEA 123
Query: 115 AREHG-YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
H A + + +++ L +V L+P + YP + SGG RQR + L P++++
Sbjct: 124 YDIHPEVAPKGDRRRRVQDLLDVVGLNPEYINRYPHQFSGGQRQRIGIARGLALRPEIIV 183
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE SALDV+ Q VI L+ +Q+ S IF+ HDL+++R I+DRV VMY G++VE
Sbjct: 184 ADEPVSALDVSVQAQVINLMAR-LQDEFDLSYIFIAHDLSIVRHISDRVGVMYLGRIVET 242
Query: 234 GPMEEVLENPAHPYTQLLLNSL----PRMGVHYKRERLSG-IPGYPISLLNPPKGCRFYT 288
G EE+ ++P HPYTQ LL+++ P H +R LSG +P S N P GCRF T
Sbjct: 243 GRDEEIYDHPTHPYTQALLSAVPVPDPEAREHRERIILSGDVP----SPTNIPSGCRFRT 298
Query: 289 RCPFAMEDCRDVEPKL--------VKVGRDHYAACH 316
RC A E C P L V H +ACH
Sbjct: 299 RCWKARERCALEVPALAVPAEFRSVSGPAAHDSACH 334
>pir||E83082 probable ATP-binding component of ABC transporter PA4505 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9950745|gb|AAG07893.1|AE004864_5 (AE004864) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 324
Score = 188 bits (473), Expect = 7e-47
Identities = 118/310 (38%), Positives = 178/310 (57%), Gaps = 13/310 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M+LLD++NL V + V VDG+ V +GEV + GESG GKS + +L+ L P
Sbjct: 1 MSLLDIKNLSVRFGDTTA-VPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAP 59
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH- 118
F G D+++L + R+I +++++ Q M ALNP+ + + ++ R H
Sbjct: 60 GWVSADHLRFDGHDMLTLKGRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEVLRLHL 119
Query: 119 ---GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
G A R+ ELL ER+ + + R+ D YP +LSGGM QR + ++ P LLIAD
Sbjct: 120 GLRGKALRQRALELL-ERVEIPAAASRL-DAYPHQLSGGMSQRVAIAMAIAAEPKLLIAD 177
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E T+ALDVT Q ++ELL + ++ + ++I +THDLA++ + A RV VMYAG+ VEIG
Sbjct: 178 EPTTALDVTIQAQIMELLLNLQRDQDM-ALILITHDLAVVAETAQRVCVMYAGEAVEIGG 236
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRE-RLSGIPGYPISLLNPPKGCRFYTRCPFAM 294
+ + + P HPYT+ L+ ++P H E RL+ +PG + P+GC RCP+A
Sbjct: 237 VPALFDRPTHPYTEALIKAIPE---HCAGEARLATLPGIVPGRYDRPRGCLLSPRCPYAQ 293
Query: 295 EDCRDVEPKL 304
E CR P L
Sbjct: 294 EHCRQERPAL 303
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 188 bits (472), Expect = 9e-47
Identities = 108/305 (35%), Positives = 181/305 (58%), Gaps = 25/305 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVR-----AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLIL 55
M LL ++NL Y+ P G++R A+ VS + +G+ + GESG GKSTL ++
Sbjct: 1 MELLSIQNLTKVYKVPAGFLRKKNFFALKEVSLSIKQGDFLAIVGESGSGKSTLGKIILR 60
Query: 56 RKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
+ P + G FKG+D+ S+ ++ RK+ S + Q ++LNP ++++I+ +
Sbjct: 61 LEKPTK---GKVSFKGKDIFSMGKEYTRKV-----SAVFQDPRSSLNPRMKVEEILEEPL 112
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
H R+E + + L V+LS + + P+++SGG QR + + +L P+L++AD
Sbjct: 113 IVHRVKGRKE---RVLKVLQRVRLSEELLEKRPLQISGGQAQRVAIARALILEPELIVAD 169
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E T++LDV+ Q ++EL +GI S FVTHD+ ++ ++A+ V V+YAG ++E+G
Sbjct: 170 EPTASLDVSVQEEILELFKELNSKGI--SFFFVTHDIRVVEKVANMVGVIYAGILMELGK 227
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRER--LSGIPGYPISLLNPPKGCRFYTRCPFA 293
EEVL+NP HPYT+ LL ++P V + ++R L + +S+ P +GC FY RCP A
Sbjct: 228 KEEVLKNPLHPYTKFLLENVP---VRHPKDRKPLKYLQEEEVSI--PEEGCPFYPRCPEA 282
Query: 294 MEDCR 298
ME+C+
Sbjct: 283 MEECK 287
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 187 bits (470), Expect = 2e-46
Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 26/309 (8%)
Query: 20 VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSLPR 79
+RAVD VSFE+ + E+ G+ GESGCGKSTL L+ P G+ +FKG+D+ L
Sbjct: 29 IRAVDNVSFEIKKNEILGLVGESGCGKSTLGKLLVRLLEPTS---GTVLFKGQDIYKLRG 85
Query: 80 DELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA-DRREVEELLRERLSMVK 138
+L++ + S + ++ Q + +P + + + + H A ++ E L + V
Sbjct: 86 KKLKEYRKS-VQMVFQNPYTSFDPRLTLFENIAEPLYTHKLALNKEEALTLAMQYFEDVG 144
Query: 139 LSPRVADM--YPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHF 196
L+P + YP ELSGG QRA++ + L P+ ++ADE TS LD + + ++ L+
Sbjct: 145 LTPPEDFLMRYPHELSGGQLQRASIARAIALEPEFIVADEPTSMLDASLRSGILNLIKKL 204
Query: 197 MQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLN-SL 255
+E + S +F+THDL IADR+ VMY GK+VEIG +EVL+NP HPYTQ LL +L
Sbjct: 205 RKE-LHTSWLFITHDLPSAYYIADRIAVMYLGKIVEIGESKEVLKNPLHPYTQALLEANL 263
Query: 256 P-RMGVHYKRERLSGIP------GYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVG 308
P K ++ G P GY CRF+ RCP+A E C+ EP LV+V
Sbjct: 264 PIDPDASLKEPKVKGEPKPVFETGY----------CRFFPRCPYAFEKCKKEEPPLVEVK 313
Query: 309 RDHYAACHL 317
+DHY AC L
Sbjct: 314 KDHYVACWL 322
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 187 bits (470), Expect = 2e-46
Identities = 109/322 (33%), Positives = 174/322 (53%), Gaps = 13/322 (4%)
Query: 3 LLDVRNLRVYYRTPVGY-------VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLIL 55
LL+ + L ++ G+ +RAVDGV + GE G+ GESGCGKSTL L+
Sbjct: 5 LLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMR 64
Query: 56 RKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
P G+ F G D ++L + LR+ + S++ II Q ++LNP +++I+ +
Sbjct: 65 LLEPTR---GTLSFAGSDFLALKGEALRQ-KRSDIQIIFQDPFSSLNPRMTVREIIGEPL 120
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
+ H A ++ + + E + V L A YP E SGG RQR + + L P L+I D
Sbjct: 121 KTHRLAKGNDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICD 180
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E SALDV+ Q ++ L+ +Q+ + +F+ H L ++ I+DR+ VMY GKVVE+
Sbjct: 181 EPVSALDVSIQAQILNLMVR-LQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELAS 239
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRE-RLSGIPGYPISLLNPPKGCRFYTRCPFAM 294
+ + P HPY++ L+ ++P + + + + G S ++PP GCRF+ RCP+A
Sbjct: 240 KDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQ 299
Query: 295 EDCRDVEPKLVKVGRDHYAACH 316
+ C EP L + H+ ACH
Sbjct: 300 DKCTVQEPALTEKEPGHFVACH 321
>sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDP
>gi|7445758|pir||G64901 ABC-type transport protein b1484
- Escherichia coli >gi|1742424|dbj|BAA15139.1| (D90789)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1742435|dbj|BAA15149.1| (D90790)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1787759|gb|AAC74557.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 328
Score = 186 bits (467), Expect = 3e-46
Identities = 116/310 (37%), Positives = 170/310 (54%), Gaps = 8/310 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
+LD++ L + + G V A++ VS ++ GE+ G+ GESG GKS ++ P Y
Sbjct: 5 VLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSY 64
Query: 63 --KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G G D+++ +LR+ + + +++I Q M ALNPT+RI + D+ R H
Sbjct: 65 CVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQP 124
Query: 121 ADRREVEELLRERLSMVKLSPRVADM--YPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
RRE + L +++ V M YP ELSGGMRQR + ++ P L+IADE T
Sbjct: 125 ISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPT 184
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q V+ LL H + +++F++HD+A++ Q+ D V VMYAG V+E G +
Sbjct: 185 TALDVTVQLQVLRLLKHKARASGT-AVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTAD 243
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
V+ +P HPYT LL P GV R+ L IPG +L + P GC F RC A C
Sbjct: 244 VIHHPRHPYTIGLLQCAPEHGV--PRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQCE 301
Query: 299 DVEPKLVKVG 308
+V P L G
Sbjct: 302 NV-PALTACG 310
>sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV1281C
>gi|7445626|pir||A70756 probable ABC-type peptide
transport protein - Mycobacterium tuberculosis (strain
H37RV) >gi|1480305|emb|CAB00901.1| (Z77137) oppD
[Mycobacterium tuberculosis]
Length = 612
Score = 185 bits (464), Expect = 8e-46
Identities = 115/318 (36%), Positives = 171/318 (53%), Gaps = 9/318 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL+V +L V +RT V AV G+S+ V GEV + GESG GKS +++ P
Sbjct: 4 LLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQ 63
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH---- 118
GS +G +L+ L + + + + + + Q M+AL P + D + + H
Sbjct: 64 VRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPRV 123
Query: 119 -GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
A RR ELL L + R + +P ELSGG RQR + ++ +PDLLI DE
Sbjct: 124 GKKAARRRAVELL--DLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDVT Q ++++L ++ ++ +THDL ++ + ADR +VMYAG+VVE +
Sbjct: 182 TTALDVTVQAQILDVL-KAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVN 240
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
++ + PYT LL S+PR+ + RL IPG P SL GC F RCP +++C
Sbjct: 241 DLYRDRRMPYTVGLLGSVPRLDA-AQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDEC 299
Query: 298 RDVEPKLVKVGRDHYAAC 315
EP+L+ V DH AAC
Sbjct: 300 LTAEPELLDVATDHRAAC 317
Score = 152 bits (380), Expect = 5e-36
Identities = 92/247 (37%), Positives = 141/247 (56%), Gaps = 6/247 (2%)
Query: 11 VYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFK 70
V R +G VRAVDG+S E+ +G G+ GESG GKST +H ++ P + GS
Sbjct: 365 VVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAP---QSGSIEVL 421
Query: 71 GRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELL 130
G D+ +L E R ++ ++ ++ Q + +L+P + D++ + + +G+ + E +
Sbjct: 422 GTDVATLGTAERRSLR-RDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFG-KNETHARV 479
Query: 131 RERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVI 190
E L +V L A YP E SGG +QR + + L P +L DE SALDV+ Q +I
Sbjct: 480 AELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGII 539
Query: 191 ELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQL 250
LL +QE S +FV+HDL++++ +A +V VM AG VVE G EEV NP H YT+
Sbjct: 540 NLLLD-LQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRR 598
Query: 251 LLNSLPR 257
LL ++P+
Sbjct: 599 LLGAVPQ 605
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 183 bits (461), Expect = 2e-45
Identities = 107/321 (33%), Positives = 188/321 (58%), Gaps = 16/321 (4%)
Query: 3 LLDVRNLRVYYR-----TPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LR 56
++ V NL+VY+ T V+A+DGV+ + E E+ GV GESG GK+TL I L+
Sbjct: 14 VVKVENLKVYFTKGGMFTKKYVVKALDGVTLSIKEREIMGVVGESGSGKTTLGRVTIGLQ 73
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
KP G I +++ + +L+ I + + +I Q ++++P R+ D+ LA
Sbjct: 74 KPT---SGNVYIKADNKEINVNKAKLKDIS-NYVQMIYQDPYSSIDPIMRVYDV---LAT 126
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
Y ++++ + E + +V L + + +LSGG RQR ++ + ++NP ++ADE
Sbjct: 127 PLKYKKMSDIDKKIEEAMRLVDLPLELLENRVYQLSGGQRQRLSIARAIVVNPKYIVADE 186
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T+ LD + + +++++ +E S +++TH+L + + I+DR++V+Y GK+VE+G
Sbjct: 187 PTTMLDASLKGEILKIIKD-ARESKGFSFMYITHELPIAKIISDRIIVLYLGKIVELGNS 245
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
E+++NP HPYTQ L+ PR+ R+++ I + ++ P KGC FY RCPFAM
Sbjct: 246 NEIIKNPLHPYTQGLIEVYPRIDPSL-RDKIKEIK-IKVDIVRPDKGCVFYPRCPFAMPK 303
Query: 297 CRDVEPKLVKVGRDHYAACHL 317
C++ EP+L +V ++HY AC L
Sbjct: 304 CKEQEPELKEVSQNHYVACWL 324
>pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei
>gi|1491738|emb|CAA62801.1| (X91502) ABC transporter
[Methanosarcina mazei]
Length = 317
Score = 182 bits (458), Expect = 4e-45
Identities = 109/306 (35%), Positives = 164/306 (52%), Gaps = 11/306 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL+V+NL+V + + V A+ G+SF +GE E + GE+GCGKS H+++ PP
Sbjct: 9 LLEVKNLQVSF-LGIKTVTALSGISFSIGERETLALVGETGCGKSVAAHAIMRLLPPESG 67
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD 122
G+ +GR+L+ L E+ +I+ E+ II Q ALNP I + + R H
Sbjct: 68 VKGTVELRGRNLLGLSEKEMTEIRGKEIGIIFQNPSLALNPVYSIGHQLAEPLRLHRKEK 127
Query: 123 RREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+++ E L + + + + YP SGGM QR + ST+L+P LLIADE
Sbjct: 128 KKKALSRAAEALKNMGFANTGEIINYYPSWCSGGMNQRFLIAASTILDPALLIADEPGKG 187
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LD + + L +E +++ ++HDL +R +ADRV VMYAG++VEI +
Sbjct: 188 LDRSCLSELEAGLKRLKEEKKT-ALLLISHDLGFVRNLADRVAVMYAGEIVEIADSSGIF 246
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
E P HPYT+ LLNSLP G IPG+ L P GCRF+ RCP C +
Sbjct: 247 EEPLHPYTKGLLNSLPEKG-------FIPIPGFSPPLSRLPSGCRFHPRCPLRKRCCIEN 299
Query: 301 EPKLVK 306
+P++++
Sbjct: 300 QPEIIE 305
>gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-binding; YkfD
[Halobacterium sp. NRC-1]
Length = 445
Score = 182 bits (458), Expect = 4e-45
Identities = 111/293 (37%), Positives = 168/293 (56%), Gaps = 10/293 (3%)
Query: 3 LLDVRNLRVYY----RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKP 58
L++V +L+ +Y R V+AVDGV+FE+ EGE G+ GESG GK+TL +LI +
Sbjct: 19 LVEVTDLKKHYGDGGRFSGPPVKAVDGVNFEIQEGETLGLVGESGSGKTTLGRTLIQLET 78
Query: 59 PMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH 118
E G+ F GRD+ L +L++ + I+ Q ++LN I +IV + H
Sbjct: 79 ATE---GTVSFDGRDITKLTGSDLKQWR-KNAQIVFQDPDSSLNDRMTIGEIVREPLDAH 134
Query: 119 GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ E + ++E LS V L YP + SGG RQR + + L P+ ++ DE
Sbjct: 135 DWNSPAERRDRVKELLSSVGLQADHYYRYPHQFSGGQRQRIGIARALALEPEFMVLDEPV 194
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
SALD + Q ++ LL +Q+ + +F+ HDL+++R I DRV VMY GK++EIG EE
Sbjct: 195 SALDASVQAKILNLLED-LQDEFGLTYLFIAHDLSVVRHICDRVAVMYLGKIMEIGETEE 253
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
+ + +PYT+ LL+++PR R R++ +PG P S NPP GC+F TRCP
Sbjct: 254 LYADAKNPYTRSLLSAIPRPDPTIDRNRIT-LPGAPPSPRNPPAGCQFSTRCP 305
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 182 bits (457), Expect = 5e-45
Identities = 119/333 (35%), Positives = 178/333 (52%), Gaps = 28/333 (8%)
Query: 3 LLDVRNLRVYYRT-----------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVH 51
++ +R L+V+Y P VRAVDGV + EGEV + GESGCGK+TL
Sbjct: 13 IVSIRGLKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGK 72
Query: 52 SLILRKPPMEYKGGSAIFKGRDLMS--LPRDE-LRKIQYSELSIIPQYAMNALNPTKRIK 108
+++ + P + G+ ++G L L RD LR+ +L ++ Q +L+P +
Sbjct: 73 AIVGIEEPSD---GAIYYRGELLTPHRLARDRRLRR----KLQMVFQDPYKSLDPLMPVG 125
Query: 109 DIVWDLAREHGYADRREVEELLRERLSMVKLSPRVADMY---PVELSGGMRQRATMVVST 165
D V + HG A E E L V L+P + Y P +LSGG RQR + +
Sbjct: 126 DQVAEPLVIHGLARGEEARRRAVEMLETVGLTPG-REFYWRKPHQLSGGQRQRVAIARTL 184
Query: 166 LLNPDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVM 225
+L P++++ADE S +DV+ + +++L+ + + +I+ +THD+A+ R +ADR+ VM
Sbjct: 185 VLEPEVIVADEPVSMIDVSMRASILDLIMDYHRR-TGATIVLITHDIAVARAVADRIAVM 243
Query: 226 YAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCR 285
Y GK+VE+G V+ENP HPYT L+ S P + +R I G S + P GCR
Sbjct: 244 YLGKIVEVGEPRSVIENPRHPYTAALVTSTP--SISRRRPPRFPISGEVPSAVAIPPGCR 301
Query: 286 FYTRCPFAMEDCRDVEPKLVKVGRDHYAACHLL 318
F+ RCP A CR EP LV+ G YA H L
Sbjct: 302 FHPRCPLASSLCRSREPALVEEGGRLYACHHPL 334
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 182 bits (456), Expect = 7e-45
Identities = 105/306 (34%), Positives = 172/306 (55%), Gaps = 10/306 (3%)
Query: 20 VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPMEYKGGSAIFKGRDLMSLP 78
V A DG+ + EGE G+ GESGCGKSTL +++ L KP G F+G ++ +
Sbjct: 85 VIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYKPT----AGEIFFEGENITNYT 140
Query: 79 RDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRRE--VEELLRERLSM 136
++ ++ ++ II Q ++LNP + I+ + EHG +++ E+ ++E ++
Sbjct: 141 VTQMMPLR-KKMQIIFQDPYSSLNPKMTVGQIIGEALLEHGMFKKKDPAYEKYVKEIMNT 199
Query: 137 VKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHF 196
L+ + YP E SGG RQR + + L P ++ DE SALDV+ Q +I LL+
Sbjct: 200 CGLADYMIYRYPHEFSGGQRQRIGIARALALKPKFIVCDEAVSALDVSIQSQIINLLNDL 259
Query: 197 MQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLP 256
+E + S +F++HDL++++ I+DR+ VMY G +VE E+ NP HPYT++LL+++P
Sbjct: 260 QKEFNL-SYLFISHDLSVVKHISDRIGVMYLGNMVEFTDKREMYANPLHPYTKVLLSAIP 318
Query: 257 RMGVHYKR-ERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAAC 315
+ R +R + G S + P GC+F+TRCP A + C+ P+ + H+ AC
Sbjct: 319 ETDLQKMRTKRRILLEGDIPSNIITPTGCKFHTRCPIAKDICKREIPQFKEEKPGHFVAC 378
Query: 316 HLLGGE 321
H G E
Sbjct: 379 HFSGAE 384
>emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 356
Score = 181 bits (454), Expect = 1e-44
Identities = 115/324 (35%), Positives = 180/324 (55%), Gaps = 7/324 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
+L +++ V + + A+ VS E+ EGEV GESG GKS L + + +
Sbjct: 8 ILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGR 67
Query: 62 YKGGSAIFKGRDLMSLPRD-ELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GS +++G++L L + E KI+ S+++ I Q M +L+P K I + ++ +H
Sbjct: 68 IANGSIVYRGQELTDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQK 127
Query: 121 ADRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ +E+ + ++ V + + + + YP E SGGMRQR + ++ PD+LI DE T
Sbjct: 128 VSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEYSGGMRQRIVIAIALACRPDILICDEPT 187
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++ELL +E +IIF+THDL ++ IAD+V VMYAG++VE G +EE
Sbjct: 188 TALDVTIQAQIVELLKSLQREYHF-TIIFITHDLGVVASIADKVAVMYAGEIVEFGTVEE 246
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ +P HPYT LL+SLP++ + L IPG P SL +P G F R +AM
Sbjct: 247 IFYDPRHPYTWSLLSSLPQLA--DESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDF 304
Query: 299 DVEPKLVKVGRDHYAACHLLGGES 322
+ P + V H+A LL E+
Sbjct: 305 EKAPPAINVSETHWAKTWLLHPEA 328
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 181 bits (454), Expect = 1e-44
Identities = 116/305 (38%), Positives = 172/305 (56%), Gaps = 13/305 (4%)
Query: 1 MALLDVRNLRVYYRT-PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
+ LL+V L++++ V+AVDGV+F++ EGE FG+ GESGCGKSTL L+ P
Sbjct: 4 LPLLEVSQLKMHFDAGKKRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRLYQP 63
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
E GS ++G +L +L E +L +I Q +LNP +++I+ + H
Sbjct: 64 TE---GSVTYRGTNLHALSEKEQFAFN-RKLQMIFQDPYASLNPRMTVREIILEPMEIHN 119
Query: 120 -YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
Y + ++ E L V L P YP E SGG RQR + + LNP+ ++ADE
Sbjct: 120 LYNTHKARLSVVDELLEAVGLHPDFGSRYPHEFSGGQRQRIGIARALSLNPEFIVADEPI 179
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
SALDV+ Q V+ LL +E + + +F+ HDL++++ I+DR+ VMY G ++EI
Sbjct: 180 SALDVSVQAQVVNLLKRLQKEKGL-TFLFIAHDLSMVKHISDRIGVMYLGHMMEITESGT 238
Query: 239 VLENPAHPYTQLLLNSLPRMG--VHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
+ P HPYT+ LL+S+P + KRER+ + G S +NPP GC F TRCP E
Sbjct: 239 LYREPLHPYTKALLSSIPIPDPELEDKRERIL-LKGELPSPVNPPSGCVFRTRCP---ER 294
Query: 297 CRDVE 301
C +VE
Sbjct: 295 CLNVE 299
>dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elongatus]
Length = 531
Score = 178 bits (447), Expect = 8e-44
Identities = 101/254 (39%), Positives = 149/254 (57%), Gaps = 5/254 (1%)
Query: 3 LLDVRNLRVYY---RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
LL++R LRV Y T VDGVSF V GE FG+ G SGCGKST+ +++ PP
Sbjct: 4 LLELRELRVAYPRMETSSAATFVVDGVSFCVAAGERFGLVGASGCGKSTIGKAILRLLPP 63
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G +G+ L+ L +L++++ ++ ++ Q M LNP I D +L R H
Sbjct: 64 GSQIFGQIALQGQSLLGLSASQLQRLRGEQIGLVFQDPMTRLNPLMSIYDHCDELLRSHW 123
Query: 120 YA-DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
++ R + + + E L VK+ YP ELSGGMRQR + ++ LLNP L+IADE T
Sbjct: 124 FSWSRPQRRQRIIEVLERVKIPANRLHQYPHELSGGMRQRVAIALALLLNPPLIIADEPT 183
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT ++E L Q+ + ++ ++HDLAL+ + DR+ VM+ GK++E+G +
Sbjct: 184 TALDVTVAAEILEELTRLCQQE-QRGLLLISHDLALMAKYCDRLAVMHQGKIMELGAAHQ 242
Query: 239 VLENPAHPYTQLLL 252
VL+ P HPYTQ LL
Sbjct: 243 VLQRPQHPYTQSLL 256
Score = 162 bits (406), Expect = 5e-39
Identities = 102/257 (39%), Positives = 143/257 (54%), Gaps = 12/257 (4%)
Query: 3 LLDVRNLRVYYRT-----PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRK 57
LL V NL+ +YR P +RAVDGV + GE G+ GESGCGKSTL LIL+
Sbjct: 275 LLRVENLQRHYRLGGWLQPQTTIRAVDGVDLTLRRGETLGLVGESGCGKSTLSR-LILQL 333
Query: 58 PPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLARE 117
P G +F GR L L +LR+ + +L +I Q LNP + + +
Sbjct: 334 IPAN--AGDVVFLGRSLTQLSAAQLRRTR-RDLQMIFQDPHACLNPKMTVAQNLLEPLLI 390
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADM--YPVELSGGMRQRATMVVSTLLNPDLLIAD 175
H +R +E +RE L V+L+P A + YP LSGG RQR + + + +P L+I D
Sbjct: 391 HRLMAKRAAQERVREMLMQVELTPAEAYLHRYPHALSGGQRQRVAIARALITHPQLVICD 450
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E S LD Q V+ L+ ++E + + +F+THDLA+ R+ DRV VMY GK+VE+ P
Sbjct: 451 EPVSMLDAHIQAQVLALMQE-LKEQLQLTYLFITHDLAIARRFCDRVAVMYRGKIVELAP 509
Query: 236 MEEVLENPAHPYTQLLL 252
++ +P HPYTQ LL
Sbjct: 510 TAQLFAHPQHPYTQKLL 526
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 178 bits (447), Expect = 8e-44
Identities = 124/335 (37%), Positives = 166/335 (49%), Gaps = 41/335 (12%)
Query: 3 LLDVRNLRVYY--RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
LL VR L V + R RAVDGV ++ GE+ + GESGCGK+TL SL+ P
Sbjct: 32 LLSVRGLHVTFPGRRGAAAARAVDGVDLDIRRGEIVALVGESGCGKTTLARSLLGLVRPT 91
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GG F G L R K ++ Q +LNP + DIV + R HG+
Sbjct: 92 ---GGRVTFDGAPLGYSAR--ALKAYRRRAQLVLQDPSGSLNPRHTVYDIVAEGLRIHGH 146
Query: 121 ADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
A + + E LS L P R YP ELSGG RQR + + +L P+LL+ADE
Sbjct: 147 AG--DERTAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLQPELLVADEPV 204
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
++LD + + ++ LL E + S + VTHDL L IADRV VMY G++VE G +E+
Sbjct: 205 ASLDASVRGEILALLLRLRTE-LGLSALVVTHDLGLAWNIADRVAVMYLGRIVETGAVEQ 263
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPK-------GCRFYTRCP 291
VL P HPYTQ LL+ LP PG P+ L P GCRF+ RCP
Sbjct: 264 VLTAPRHPYTQALLSVLPE------------APGAPVVLTGEPPDPSYIPGGCRFHVRCP 311
Query: 292 F----------AMEDCRDVEPKLVKVGRDHYAACH 316
+ CR+ E ++++ G + ACH
Sbjct: 312 VLASGEAVRAGVADACRNEELEILRGGDESQVACH 346
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 176 bits (442), Expect = 3e-43
Identities = 104/274 (37%), Positives = 167/274 (59%), Gaps = 8/274 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
+L+V++L+ Y+ T G +AVDGVSF + + + + GESG GKS S++ L + P +
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGK 61
Query: 62 YKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLAR-EHG 119
GGS F G+DL+ L +++K I+ ++ +I Q M +LNP+ + + ++ + H
Sbjct: 62 IVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKIHHP 121
Query: 120 YADRREVEELLRERLSMVKLSPRVADMY---PVELSGGMRQRATMVVSTLLNPDLLIADE 176
+++E E + L V + P D Y P LSGG RQR + ++ + P++LIADE
Sbjct: 122 SLNKKERLERVVYELERVGI-PHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIADE 180
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T+ALDVT Q ++EL+ Q+ SI+F+THDL ++ QIAD V+VMY G VVE
Sbjct: 181 PTTALDVTIQAQILELMKELQQKKGT-SILFITHDLGVVAQIADEVVVMYKGHVVEQASA 239
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGI 270
+E+ +P HPYT+ LLN++P+ G Y+++RL +
Sbjct: 240 KELFADPRHPYTKALLNAIPKPGKEYRKKRLETV 273
>pir||C72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981011|gb|AAD35585.1|AE001726_19 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 384
Score = 176 bits (442), Expect = 3e-43
Identities = 102/259 (39%), Positives = 148/259 (56%), Gaps = 4/259 (1%)
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
E KG F L LP E RK E+ I+ Q ++LNP R+K IV + H
Sbjct: 127 EAKGSPKKFMSILLDDLP--EKRKKFRREMQIVFQDPYSSLNPRLRVKSIVGEGIVTHRI 184
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
A +EVE+ ++E L V + +P E SGG RQR + + L P L++ADE +A
Sbjct: 185 ARGKEVEKRIKEILEDVGIPSAYVYRFPHEFSGGQRQRIGIARALALEPKLVVADEAVAA 244
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LDV+ + +I L+ +E + + IF++HDLA+++ I+DR+ VMY GK+VE+ P +++
Sbjct: 245 LDVSIRSQIINLMEDLQREHKL-TYIFISHDLAVVKHISDRIGVMYLGKMVELAPKKDLF 303
Query: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
E P HPYT L++++P KRER+ + G S +NPP GCRF+TRCP A E C
Sbjct: 304 EKPLHPYTVALMSAIPVPDPTKKRERII-LKGDVPSPINPPSGCRFHTRCPIAKEICSKE 362
Query: 301 EPKLVKVGRDHYAACHLLG 319
EP +V H+ ACH G
Sbjct: 363 EPAFREVEEGHFVACHFPG 381
>sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIE
>gi|98018|pir||S11152 oligopeptide transport protein
amiE - Streptococcus pneumoniae
>gi|47346|emb|CAA35216.1| (X17337) AmiE protein
[Streptococcus pneumoniae]
Length = 355
Score = 175 bits (440), Expect = 5e-43
Identities = 117/323 (36%), Positives = 179/323 (55%), Gaps = 13/323 (4%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
+L R++ V + + A+ GVS E+ EGEV + GESG GKS L + + +E
Sbjct: 8 ILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTF---RGMLEE 64
Query: 63 KG----GSAIFKGRDLMSLP-RDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLARE 117
G GS ++G+DL +L + +I+ ++++ I Q M +L+P K I + ++ +
Sbjct: 65 NGRIAEGSIDYRGQDLTALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVK 124
Query: 118 HGYADRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
H +E +EL + ++ V + + R + YP + SGGMRQR + ++ PD+LI D
Sbjct: 125 HQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQYSGGMRQRIVIAIALACRPDVLICD 184
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E T+ALDVT Q +I+LL E +I F+THDL ++ IAD+V VMYAG++VE G
Sbjct: 185 EPTTALDVTIQAQIIDLLKSLQNEYHFTTI-FITHDLGVVASIADKVAVMYAGEIVEYGT 243
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAME 295
+EEV +P HPYT LL+SLP++ + L IPG P SL KG F R +AM+
Sbjct: 244 VEEVFYDPRHPYTWSLLSSLPQLA--DDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQ 301
Query: 296 DCRDVEPKLVKVGRDHYAACHLL 318
+ + V H+A LL
Sbjct: 302 IDFEQKAPQFSVSETHWAKTWLL 324
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 175 bits (439), Expect = 7e-43
Identities = 107/315 (33%), Positives = 174/315 (54%), Gaps = 14/315 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVR----AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
M LL+++NL + + R AVD V+F++ E E+F +AGESGCGK+T ++
Sbjct: 1 MPLLEIKNLTKIFTIGSIFSRTRIVAVDNVNFDINEAEIFTLAGESGCGKTTTAKIILGF 60
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDEL-RKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
+ P G I+KGR + + ++E R+ E+ + Q + NP +++ ++
Sbjct: 61 EEPTS---GEIIYKGRKIDRVHQNEKERRELLKEIQAVFQNPFSTFNPLRKVDRYFYETL 117
Query: 116 REHGYAD-RREVEELLRERLSMVKLS-PRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
G AD +++ EE+++E+LS V +S ++ YP E SGG QR ++ + L NP LL+
Sbjct: 118 FNLGIADTKKKAEEIIKEKLSAVGISFEEFSEKYPSEFSGGQLQRISIARALLTNPSLLV 177
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE S +D + + ++ L ++ V S++++THDL ++DR+ VM+ G +VE+
Sbjct: 178 ADEPVSMVDASLRMSIVNLFKDLKEQYGV-SVLYITHDLTTAYYVSDRIAVMFRGNIVEL 236
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMGVHYKRE-RLSGIPGYPISLLNPPKGCRFYTRCPF 292
GP E+VL P HPYTQLL S+P K + R+ L +GC+F RCP
Sbjct: 237 GPAEKVLMEPKHPYTQLLRESVPEPDPKKKWDIRIKLSETEQAEYLR--QGCKFAGRCPK 294
Query: 293 AMEDCRDVEPKLVKV 307
AM+ CR P +V
Sbjct: 295 AMDICRKEPPPYFEV 309
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 175 bits (439), Expect = 7e-43
Identities = 113/300 (37%), Positives = 163/300 (53%), Gaps = 14/300 (4%)
Query: 20 VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSLPR 79
V+AV VSF V GE FG+ GESGCGKSTL L + P G F G++L +L
Sbjct: 302 VKAVRDVSFTVKAGENFGIVGESGCGKSTLTRLLAWLEQP---NAGRIAFLGKNLSNLSA 358
Query: 80 DELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLSMVKL 139
L +++ S ++ Q +L I ++ + HG A RR+ E+ +E + V L
Sbjct: 359 RSLTEMRKS-FQLLLQDPYGSLPAGMSIIRMIEEPLLIHGVA-RRDAEQRAQEAMREVGL 416
Query: 140 SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQE 199
+A+ PV LS G RQR + + +L P LLI DE SALD Q +++L +Q
Sbjct: 417 HADLAERLPVGLSAGQRQRINIARALVLKPRLLILDETLSALDQVEQAELLDLFKR-LQA 475
Query: 200 GIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMG 259
S IF++HDLAL+R+I RV VMY G++VE+ + + E+P HPYT+ LL+++P +
Sbjct: 476 AHGFSYIFISHDLALVRRICHRVAVMYLGRIVELADNKTLFEHPHHPYTRALLSAMPTL- 534
Query: 260 VHYKRERLSG----IPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAAC 315
+ R G + G P S ++ P GC F +RCP A DC +P L +YAAC
Sbjct: 535 ---EENRFPGAQYLLDGEPPSPIHLPVGCSFRSRCPRAQSDCEKTDPMLEGSDGGNYAAC 591
Score = 133 bits (332), Expect = 2e-30
Identities = 87/258 (33%), Positives = 138/258 (52%), Gaps = 5/258 (1%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR-KPPME 61
+L V NL V R VD V F + GEV G+ GE+G GKS L +++ + P++
Sbjct: 5 ILAVSNLSVDLLRDGSKRRIVDNVDFALQPGEVLGLVGEAGSGKSVLARAMVNAIQAPLD 64
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLAREHGY 120
G IF+G+D++SL LR I+ + + I M +L+P I IV L
Sbjct: 65 ISSGQVIFEGKDVLSLDARGLRSIRGNRIGFIGANPMGSLDPRLPIGHQIVEKLRSVRPD 124
Query: 121 ADRREVEELLRERLSMVKL-SPRVA-DMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ E +E + + L V + SPR P + SGGM QR +V + + P L+IAD IT
Sbjct: 125 IGKAEAKEKVLDLLGRVHIPSPRSRFHEAPFQFSGGMMQRVMIVDALVSEPSLVIADNIT 184
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
LDVT +I L+ + ++E + + +F++ L ++ +IA+R +VM G++VE G +
Sbjct: 185 QPLDVTVAAQIIRLIDN-LRESLDTAFLFISSSLPVVSKIAERTLVMQGGRIVEQGETAD 243
Query: 239 VLENPAHPYTQLLLNSLP 256
+ NP YT+ LL+ +P
Sbjct: 244 IAANPQQAYTRALLSRIP 261
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 175 bits (438), Expect = 9e-43
Identities = 103/274 (37%), Positives = 167/274 (60%), Gaps = 8/274 (2%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
+L+V++L+ Y+ T G +AVDGVSF + + + + GESG GKS S++ L + P +
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGQ 61
Query: 62 YKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLAR-EHG 119
GGS F G+DL+ L +++K I+ ++ +I Q M +LNP+ + + ++ + H
Sbjct: 62 IVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKIHHP 121
Query: 120 YADRREVEELLRERLSMVKLSPRVADMY---PVELSGGMRQRATMVVSTLLNPDLLIADE 176
+++E E + L V + P D Y P LSGG RQR + ++ + P++LIADE
Sbjct: 122 NLNKKERLERVVYELERVGI-PHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIADE 180
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T+ALDVT Q ++EL+ Q+ SI+F+THDL ++ QIAD V+VMY G VVE
Sbjct: 181 PTTALDVTIQAQILELMKELQQKKGT-SILFITHDLGVVAQIADEVVVMYKGHVVEQASA 239
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGI 270
+E+ +P HPYT+ LL+++P+ G Y+++RL +
Sbjct: 240 KELFADPRHPYTKALLSAIPKPGKEYRKKRLETV 273
>pir||A72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981772|gb|AAD36294.1|AE001778_15 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 315
Score = 175 bits (438), Expect = 9e-43
Identities = 118/323 (36%), Positives = 180/323 (55%), Gaps = 21/323 (6%)
Query: 1 MALLDVRNLRVYYRTPVGY-----VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLIL 55
M+LL V+NL + P+G+ ++AVD VSFE+ + + GESG GK+T V LIL
Sbjct: 1 MSLLKVQNLTKEF--PLGFFGKERLKAVDDVSFEIERSRIVSLIGESGSGKTT-VGKLIL 57
Query: 56 RKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
+ + G + GRD+ + ELR+ Y ++ + Q ++ NP +I D V D+
Sbjct: 58 KL--IRPSSGQILLNGRDITQIKGRELREY-YRKVQGVFQDPFSSFNPIYKI-DRVLDMV 113
Query: 116 REHGYADRREVEEL--LRERLSMVKLSPR-VADMYPVELSGGMRQRATMVVSTLLNPDLL 172
E + D E + E ++ V ++PR + YP +LSGG QR + + LLN +LL
Sbjct: 114 FEEFFPDTPASERRTKMEEVIASVGMNPREILGKYPHQLSGGQLQRILIARTLLLNVELL 173
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
IADEI S LD +T+ ++ LL + G+ S+IF+THDL+L I+D +MY G +VE
Sbjct: 174 IADEIISMLDASTRVDILNLLGDLRERGM--SVIFITHDLSLGYYISDETFIMYRGNIVE 231
Query: 233 IGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPF 292
+G E+V NP HPYT++LL S+P + + + IP +S N P C++Y RCP
Sbjct: 232 MGDTEKVFHNPIHPYTKMLLESVPEIDRKWDLSK-RFIPEL-VSSSNAP--CKYYDRCPI 287
Query: 293 AMEDCRDVEPKLVKVGRDHYAAC 315
E C +P +V+V +H C
Sbjct: 288 RDERCLVQKPAMVEVEENHKVLC 310
>sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1361734|pir||G64208 oligopeptide transport
ATP-binding protein amiE - Mycoplasma genitalium
>gi|1045756|gb|AAC71297.1| (U39688) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Mycoplasma
genitalium]
Length = 402
Score = 174 bits (437), Expect = 1e-42
Identities = 108/356 (30%), Positives = 186/356 (51%), Gaps = 43/356 (12%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
+LD+ +L V ++ G + AV G+ +V G + G+ GESG GKS V S+I +
Sbjct: 21 ILDITDLHVNFKVKDGILHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQT 80
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPT----KRIKDIVWDLAREH 118
K FK D+ L + + + + + +S I Q + +LNPT K++K+ ++ ++
Sbjct: 81 KAKLMNFKNVDITKLKKHQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKRR 140
Query: 119 GYADR---------------------REVEELLRERLSMVKLSPRVADM----------- 146
+ + +E+++ ++++ + + + ++
Sbjct: 141 YFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAKK 200
Query: 147 ----YPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQEGIV 202
+P E SGGMRQR + ++ PDL+IADE T+ALDVT Q V+ L+ +++ +
Sbjct: 201 RLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQ-LRDLLN 259
Query: 203 KSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHY 262
+IIF++H+++L+ D V VMYAGK+VE G +EE+ NP HPYT L++S+P
Sbjct: 260 ITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISSIPEQ--KD 317
Query: 263 KRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAACHLL 318
K + L+ IPG ++L PPKG F +R +A+ + P +V + H AA LL
Sbjct: 318 KNKPLTSIPGVIPNMLTPPKGDAFASRNQYALAIDFEYHPPFFEVTKTHKAATWLL 373
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 173 bits (434), Expect = 3e-42
Identities = 104/298 (34%), Positives = 166/298 (54%), Gaps = 7/298 (2%)
Query: 20 VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSLPR 79
++AV VSF++ GE GV GESGCGKSTL ++I +E G ++ G+ L
Sbjct: 36 LKAVKDVSFKLYAGETLGVVGESGCGKSTLARAII---GLVEASEGEILWLGKHLRKQSA 92
Query: 80 DELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD-LAREHGYADRREVEELLRERLSMVK 138
+ ++ + ++ +I Q + +LNP I +I+ + L + EV+E ++ + V
Sbjct: 93 KQWKETR-KDIQMIFQDPLASLNPRMNIGEIIAEPLKIYQPHLSAAEVKEKVQAMMLKVG 151
Query: 139 LSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQ 198
L P + + YP E SGG QR + + ++ P ++I DE SALDV+ Q V+ LL +
Sbjct: 152 LLPNLINRYPHEFSGGQCQRIGIARALIIEPKMIICDEPVSALDVSIQAQVVNLLKSLQK 211
Query: 199 EGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRM 258
E + S+IF+ HDLA+++ I+DRV+VMY G +E+G EV + HPYT+ L++++P
Sbjct: 212 E-MGLSLIFIAHDLAVVKHISDRVLVMYLGNAMELGSDVEVYNDTKHPYTKALMSAVPIP 270
Query: 259 GVHYKRER-LSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAAC 315
+R + + + G S +NPP GC F TRC A E+C +P H+ AC
Sbjct: 271 DPKLERNKSIELLEGDLPSPINPPSGCVFRTRCLKADENCAKQKPPFTSQNNSHFVAC 328
>sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|628820|pir||S39588 peptide transport system
ATP-binding protein sapD - Salmonella typhimurium
>gi|414211|emb|CAA52287.1| (X74212) sapD [Salmonella
typhimurium]
Length = 330
Score = 171 bits (429), Expect = 1e-41
Identities = 110/328 (33%), Positives = 177/328 (53%), Gaps = 18/328 (5%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M LLD+RNL + ++T G+V+AVD VS + EGE+ G+ GESG GKS + ++ + K
Sbjct: 1 MPLLDIRNLTIEFKTSEGWVKAVDRVSMTLSEGEIRGLVGESGSGKSLIAKAICGVAKDN 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLA--- 115
F DL+ L E RK+ +S+I Q + L+P++R+ + ++ ++
Sbjct: 61 WRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWT 120
Query: 116 ------REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNP 169
+ G+ RR +E L R + K R +P EL+ G Q+ + ++ P
Sbjct: 121 YKGRWWQRLGWRKRRAIELLHRVGIKDHKEPMR---SFPYELTDGECQKVMIAIALANQP 177
Query: 170 DLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
LLIADE T++++ TTQ + LL Q +I+ ++HDL +L Q AD++ V+Y G+
Sbjct: 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNT-TILLISHDLQMLSQWADKINVLYCGQ 236
Query: 230 VVEIGPMEEVLENPAHPYTQLLLNSLPRMG-VHYKRERLSGIPGYPISLLNPPKGCRFYT 288
VE P ++++ P HPYTQ L+ ++P G + RL+ +PG L P GCR
Sbjct: 237 TVETAPSKDLVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGP 296
Query: 289 RCPFAMEDCRDVEPKLVKVGRDHYAACH 316
RCP+A +C + P+L ++H ACH
Sbjct: 297 RCPYAQREC-IITPRLTG-AKNHLYACH 322
>emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi]
Length = 330
Score = 171 bits (429), Expect = 1e-41
Identities = 108/328 (32%), Positives = 174/328 (52%), Gaps = 18/328 (5%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
MALL++RN+ + + TP G V+AVD VS + EGE+ G+ GESG GKS + ++ + K
Sbjct: 1 MALLEIRNVTIEFLTPDGPVKAVDRVSINLNEGEIRGLVGESGSGKSLIAKAICGINKEN 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLA--- 115
F D++ L + RK+ +S+I Q + L+P+ R+ + ++ +
Sbjct: 61 WRITADRFRFDDVDMLQLTPPQRRKLVRHNMSMIFQEPQSCLDPSARVGRQLIQSIPGWT 120
Query: 116 ------REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNP 169
+ + RR +E L R +K V +P EL+ G Q+ + ++ P
Sbjct: 121 YKGRWWQRFNWRKRRAIELLHRVG---IKDHKDVMRSFPYELTEGECQKVMIAIALANQP 177
Query: 170 DLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
LLIADE +A++ TTQ + LL Q +I+ ++HDL + + ADR+ V+Y G+
Sbjct: 178 RLLIADEPNNAMEATTQAQIFRLLSRLNQNNNT-TILLISHDLQTMSKWADRINVLYCGQ 236
Query: 230 VVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHY-KRERLSGIPGYPISLLNPPKGCRFYT 288
VE +E++ P HPYTQ L+ ++P G + RL+ +PG SL + P GCR
Sbjct: 237 TVESAVSDELISAPHHPYTQALIRAMPDFGCSLPHKSRLNTLPGAIPSLAHLPVGCRLGP 296
Query: 289 RCPFAMEDCRDVEPKLVKVGRDHYAACH 316
RCP++ + C P L+ V R+H+ ACH
Sbjct: 297 RCPYSQKQCM-TAPPLIPV-RNHWYACH 322
>pir||F71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329143|gb|AAC68285.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 321
Score = 171 bits (428), Expect = 1e-41
Identities = 109/319 (34%), Positives = 173/319 (54%), Gaps = 9/319 (2%)
Query: 3 LLDVRNLRVYY-RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
LL V+NL V R V ++ AVD +SF+V G+ + GESG GKS SL+ P
Sbjct: 6 LLQVKNLSVSLNRNRVSFL-AVDSLSFDVFPGQTLAIIGESGSGKSITAQSLMQLLPEEN 64
Query: 62 YK-GGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH-G 119
+ G A+F +L+ + + S++S+I Q + + +P I+ ++ R H G
Sbjct: 65 FSLSGEALFNKENLLDRKNTNAKVLFGSKISMIFQNPLASFDPVFTIEQQFHEVIRTHLG 124
Query: 120 YADRREVEELLRERLSMVKLSP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+++ E++L P R +YP ELSGGM QR + ++ L +PDLLIADE T
Sbjct: 125 ISNKMAHEQMLAVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIADEPT 184
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDV+ Q +++LL +Q+ S++ +THD+ ++ ++AD V V+YAG++ E ++E
Sbjct: 185 TALDVSVQYQILQLLKT-LQKKTGMSLLIITHDMGVVAEMADDVFVLYAGRMAEYSSVQE 243
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+ +PAHPYT+ LL S P Y+++ I G P + PKGC + RC A C
Sbjct: 244 IFHSPAHPYTEDLLASRPS---QYRQQTFVPIAGQPPHYTSLPKGCCYSPRCRKAQPICF 300
Query: 299 DVEPKLVKVGRDHYAACHL 317
+ P + + H C L
Sbjct: 301 EKSPDSLSLNDHHRVRCWL 319
>sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|2146480|pir||S73940 oligopeptide transport
ATP-binding protein oppD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674316|gb|AAB96262.1| (AE000058)
oligopeptide transport ATP-binding protein OppD
[Mycoplasma pneumoniae]
Length = 423
Score = 170 bits (427), Expect = 2e-41
Identities = 112/356 (31%), Positives = 183/356 (50%), Gaps = 43/356 (12%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
+LD+R+L V ++ G ++AV GV +V +G + G+ GESG GKS V S+I +
Sbjct: 21 ILDIRDLHVSFKVKDGIMQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGFNDGAKT 80
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPT----KRIKDIVWDLAREH 118
FK D+ + + + + + + +S I Q + +LNPT +++K+ ++ +
Sbjct: 81 TAKLMNFKNIDISKMKKHQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIYVSCKRR 140
Query: 119 GYADRREVE-ELLRERLSMVKLSPRVADM------------------------------- 146
Y + +++ +L ER+ + ++A
Sbjct: 141 YYQTKSDLKYDLQTERIDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEK 200
Query: 147 ----YPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQEGIV 202
+P E SGGMRQR + ++ PDL+IADE T+ALDVT Q + L+ +++ +
Sbjct: 201 RLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQ-LRDLLN 259
Query: 203 KSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHY 262
+IIF++H+++L+ D V VMYAG++VE G +EE+ NP HPYT L+ S+P G
Sbjct: 260 ITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMASIPE-GTD- 317
Query: 263 KRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAACHLL 318
K L+ IPGY ++L+PPKG F R FA+ + +P V H AA LL
Sbjct: 318 KNAPLTSIPGYIPNMLSPPKGDAFAARNQFALAIDFEHQPPFFDVTETHKAATWLL 373
>sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|7445933|pir||F64877 peptide transport system
ATP-binding protein sapD - Escherichia coli
>gi|1279403|emb|CAA65940.1| (X97282) SapD protein
[Escherichia coli] >gi|1742104|dbj|BAA14844.1| (D90766)
Peptide transport system ATP-binding protein SapD
(fragment). [Escherichia coli]
>gi|1742113|dbj|BAA14852.1| (D90767) Peptide transport
system ATP-binding protein SapD (fragment). [Escherichia
coli] >gi|1742122|dbj|BAA14861.1| (D90768) Peptide
transport system ATP-binding protein SapD (fragment).
[Escherichia coli] >gi|1787548|gb|AAC74373.1| (AE000227)
putative ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 330
Score = 169 bits (424), Expect = 4e-41
Identities = 111/328 (33%), Positives = 177/328 (53%), Gaps = 18/328 (5%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M LLD+RNL + ++T +V+AVD VS + EGE+ G+ GESG GKS + ++ + K
Sbjct: 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDN 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLA--- 115
F DL+ L E RK+ +S+I Q + L+P++R+ + ++ ++
Sbjct: 61 WRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWT 120
Query: 116 ------REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNP 169
+ G+ RR +E L R + K + R +P EL+ G Q+ + ++ P
Sbjct: 121 YKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR---SFPYELTEGECQKVMIAIALANQP 177
Query: 170 DLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
LLIADE T++++ TTQ + LL Q +I+ ++HDL +L Q AD++ V+Y G+
Sbjct: 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNT-TILLISHDLQMLSQWADKINVLYCGQ 236
Query: 230 VVEIGPMEEVLENPAHPYTQLLLNSLPRMG-VHYKRERLSGIPGYPISLLNPPKGCRFYT 288
VE P +E++ P HPYTQ L+ ++P G + RL+ +PG L P GCR
Sbjct: 237 TVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGP 296
Query: 289 RCPFAMEDCRDVEPKLVKVGRDHYAACH 316
RCP+A +C V P+L ++H ACH
Sbjct: 297 RCPYAQREC-IVTPRLTG-AKNHLYACH 322
>gb|AAD48155.1|AF086619_1 (AF086619) ABC transporter homolog [Loofah witches'-broom
phytoplasma]
Length = 264
Score = 169 bits (424), Expect = 4e-41
Identities = 88/263 (33%), Positives = 154/263 (58%), Gaps = 4/263 (1%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M +L+V NL Y+ T G V+AV G+SF + +G+ G+ GESG GKS +S++ L +
Sbjct: 1 MKILEVNNLHTYFETEKGLVKAVQGISFYLEQGKTLGLVGESGSGKSQTANSILKLFEKT 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
+ G IF + + +++KI+ E+S+I Q + +LNP +IKD + ++ H
Sbjct: 61 QKIHQGEIIFNNQVISDFNEKKMQKIRGKEISMIFQDPITSLNPMFKIKDQIMEILFIHQ 120
Query: 120 YADRREVEELLRERLSMVKLS--PRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+E E L K+ ++ + YP +LSGGM QR + ++ + P LLI DE
Sbjct: 121 EITYKEAYEKALNMLKKTKIHNCEQIMNCYPYQLSGGMCQRVMIAIALICQPKLLIVDEA 180
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T ALDV Q+ ++ L+ +E +++F++HDL+++ +I+D ++VM GK++E +
Sbjct: 181 TIALDVIVQKEILNLIKEMQKENQT-AVLFISHDLSVISEISDDIIVMLKGKIIEKASTQ 239
Query: 238 EVLENPAHPYTQLLLNSLPRMGV 260
++L++P HPYT+ LLN+ + +
Sbjct: 240 QILKDPKHPYTRTLLNNFLKTSI 262
>gi|10954941 Probable accB [Agrobacterium tumefaciens]
>gi|6498294|dbj|BAA87746.1| (AB016260) Probable accB
[Agrobacterium tumefaciens]
Length = 321
Score = 169 bits (423), Expect = 5e-41
Identities = 116/318 (36%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL VR+L V + P + ++GVSF + G+ G+ GESGCGKS +++ P
Sbjct: 13 LLTVRDLVV--QVPARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGIS 70
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH---- 118
+ G I +L S P+ + + +++I Q ++LNP I + H
Sbjct: 71 QTGGTI----ELNSGPKADGKPA----IAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLE 122
Query: 119 GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
G R E LL ER+ + + R+ YP E SGGM QR + +L P L+IADE T
Sbjct: 123 GNDARLEAMRLL-ERVGIDRAKSRLRS-YPHEFSGGMNQRVMIATRSLAKPKLMIADEPT 180
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVTTQ ++ LL E + +++ V+HDL ++ ++ADR VMY GK+VE P+ E
Sbjct: 181 TALDVTTQAQILHLLEELRSETGM-ALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAE 239
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+LE+ AHPY + L+ +P + E IPG L N P GC ++ RCP A E C
Sbjct: 240 LLEHAAHPYARALIGCMPTIDAD-DLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCS 298
Query: 299 DVEPKLVKVGRDHYAACH 316
P V VG H AAC+
Sbjct: 299 VSFPGPVNVGAFHDAACY 316
>gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae]
Length = 330
Score = 166 bits (416), Expect = 3e-40
Identities = 110/328 (33%), Positives = 176/328 (53%), Gaps = 18/328 (5%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M LLD+RNL + ++T +V+AVD VS + EGE+ G+ GESG GKS + ++ + K
Sbjct: 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDN 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLA--- 115
F DL+ L E RK+ +S+I Q + L+P++R+ + ++ ++
Sbjct: 61 WRVTADRMRFDDIDLLGLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWT 120
Query: 116 ------REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNP 169
+ + RR +E L R + K + R +P EL+ G Q+ + ++ P
Sbjct: 121 YKGRWWQRFVWRKRRAIELLHRVGIKDHKDAMR---SFPYELTEGECQKVMIAIALANQP 177
Query: 170 DLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
LLIADE T++++ TTQ + LL Q +I+ ++HDL +L Q AD++ V+Y G+
Sbjct: 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNT-TILLISHDLQMLSQWADKINVLYCGQ 236
Query: 230 VVEIGPMEEVLENPAHPYTQLLLNSLPRMG-VHYKRERLSGIPGYPISLLNPPKGCRFYT 288
VE P +E++ P HPYTQ L+ ++P G + RL+ +PG L P GCR
Sbjct: 237 TVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGP 296
Query: 289 RCPFAMEDCRDVEPKLVKVGRDHYAACH 316
RCP+A +C V P+L ++H ACH
Sbjct: 297 RCPYAQREC-IVTPRLTG-AKNHLYACH 322
>pir||T03431 probable transport protein accB - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153178|gb|AAC17198.1| (AF010180) AccB
[Agrobacterium tumefaciens]
Length = 321
Score = 164 bits (412), Expect = 1e-39
Identities = 115/318 (36%), Positives = 166/318 (52%), Gaps = 18/318 (5%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL VR+L V + P + ++GVSF + G+ G+ GESGCGKS +++ P
Sbjct: 13 LLTVRDLIV--QVPARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGIS 70
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH---- 118
+ G I +L S P+ + + +++I Q ++LNP I + H
Sbjct: 71 QTGGTI----ELDSGPKADGKPA----IAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLE 122
Query: 119 GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
G R E LL ER+ + + R+ YP E SGGM QR + + P L+IADE T
Sbjct: 123 GNDARLEAMRLL-ERVGIDRAKSRLRS-YPHEYSGGMNQRVMIAHALAAKPKLMIADEPT 180
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVTTQ ++ LL E + +++ V+HDL ++ ++ADR VMY GK+VE P+ E
Sbjct: 181 TALDVTTQAQILHLLEELRSETGM-ALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAE 239
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCR 298
+LE AHPY + L+ +P + E IPG L N P GC ++ RCP A E C
Sbjct: 240 LLERAAHPYARALIGCMPTIDAD-DLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCS 298
Query: 299 DVEPKLVKVGRDHYAACH 316
P V VG H AAC+
Sbjct: 299 VSFPGPVNVGAFHDAACY 316
>pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376983|gb|AAD18821.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189002|gb|AAF37954.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979054|dbj|BAA98889.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 164 bits (412), Expect = 1e-39
Identities = 100/298 (33%), Positives = 160/298 (53%), Gaps = 5/298 (1%)
Query: 23 VDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKP-PMEYKGGSAIFKGRDLMSLPRDE 81
V +SF + EG+ + GESG GKS H+++ P P G F+G +L++ R
Sbjct: 26 VQSLSFTINEGQTLAIIGESGSGKSVSAHAILRLLPCPPFSVSGQVNFQGHNLLTASRSI 85
Query: 82 LRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLSMVKL-S 140
+KI +E+S+I Q +LNP I+ ++ H +E + L
Sbjct: 86 QKKIIGTEISMIFQNPQASLNPVFTIEQQFREIIHTHLALTAEVAKEKMLYALEETGFHD 145
Query: 141 PRVA-DMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQE 199
PR+ ++YP +LSGGM QR + ++ L +P LLIADE T+ALDV+ Q +++LL +Q+
Sbjct: 146 PRLCLNLYPHQLSGGMLQRICIAMALLCSPKLLIADEPTTALDVSVQYQILQLLKT-LQK 204
Query: 200 GIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLPRMG 259
S++ +TH++ ++ + AD V+V+YAG++VE P ++ NP+HPYT+ LL S P +
Sbjct: 205 KTGMSLLIITHNMGVVAETADDVLVLYAGRMVECAPAVQMFHNPSHPYTRDLLASRPSLQ 264
Query: 260 VHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAACHL 317
+ + IPG P P GCR++ RC + C P++ V H C L
Sbjct: 265 PQ-QLGSFNPIPGQPPHYTAFPSGCRYHPRCSKILNRCSAEAPEIYPVREGHKVRCWL 321
>pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190098|gb|AAF38947.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 321
Score = 162 bits (407), Expect = 4e-39
Identities = 104/320 (32%), Positives = 169/320 (52%), Gaps = 11/320 (3%)
Query: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEY 62
LL V+NL V V+ +SF V G+ + GESG GKS SL+ P +
Sbjct: 6 LLQVKNLSVSLNRNTVSFPVVEDLSFNVFPGQTLAIIGESGSGKSITAQSLMQLLPEEYF 65
Query: 63 KGGSAIFKGRDLMSLPRDELRKIQY-SELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
F ++ + ++ L K + S++++I Q + + +P I+ ++ R H
Sbjct: 66 SISGEAFLHKENLLDRKNLLSKTLFGSKMAMIFQNPLASFDPVFTIEQQFHEVIRTHLDL 125
Query: 122 DRREVEE----LLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
++ E +LRE + + R +YP ELSGGM QR + ++ L +PDLLIADE
Sbjct: 126 TKKVAHEQIVTVLRE--TGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIADEP 183
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDV+ Q +++LL +Q+ S++ +THD+ ++ ++AD V V+YAG++ E ++
Sbjct: 184 TTALDVSVQYQILQLL-KTLQKKTGMSLLVITHDMGVVAEMADDVFVLYAGRMAEYSSVQ 242
Query: 238 EVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDC 297
++ +PAHPYT+ LL S P YK++ I G+P N PKGC + RC A+ C
Sbjct: 243 DIFHSPAHPYTKDLLASRPS---QYKKQTFVPISGHPPHYTNLPKGCCYSPRCQKALPIC 299
Query: 298 RDVEPKLVKVGRDHYAACHL 317
P + + H+ C L
Sbjct: 300 YKQSPHAISLNDHHHVRCWL 319
>pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654573|gb|AAF93346.1| (AE004107) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 571
Score = 161 bits (404), Expect = 8e-39
Identities = 94/263 (35%), Positives = 151/263 (56%), Gaps = 10/263 (3%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M+LL+V+NLR+ Y + G AV ++ ++ GE+ GV GESG GKST+ +++I L PP
Sbjct: 1 MSLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPP 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
GG G + L +R+++ S++ I Q M +LNP ++ + + +
Sbjct: 61 GTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM 120
Query: 120 YADRREVEELLRERLSMVKLS--PRVAD---MYPVELSGGMRQRATMVVSTLLNPDLLIA 174
EE + LS++K P+ + YP + SGGMRQR + ++ PDL+IA
Sbjct: 121 QVS---AEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIA 177
Query: 175 DEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
DE T+ALDV+ Q ++ L+ ++ V ++ VTHD+ ++ + DRV VMY G +VE G
Sbjct: 178 DEPTTALDVSIQDQILNLIRELCKKNNVGCML-VTHDMGVVSNVTDRVAVMYRGDLVEFG 236
Query: 235 PMEEVLENPAHPYTQLLLNSLPR 257
P +VL P HPYT+ L++++PR
Sbjct: 237 PTAKVLGTPEHPYTRSLISAVPR 259
Score = 148 bits (371), Expect = 6e-35
Identities = 85/239 (35%), Positives = 135/239 (55%), Gaps = 5/239 (2%)
Query: 19 YVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSLP 78
YV+A + VSF V EGE FG+ GESG GKST+ + P G F+G DL +L
Sbjct: 325 YVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQP---NAGRVTFEGIDLTALK 381
Query: 79 RDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA-DRREVEELLRERLSMV 137
+ R+ ++ ++ Q ++NP +I DI+ + R H E +++ + L V
Sbjct: 382 SEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHV 441
Query: 138 KLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFM 197
L YP E SGG RQR ++ + P LLI DE TSALDV+ Q ++ LL +
Sbjct: 442 GLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKD-L 500
Query: 198 QEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLP 256
Q+ + +++F++HDL ++RQ+ DRV VM G ++E+ P E++ +P H Y++ L++ +P
Sbjct: 501 QDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559
>pir||E70485 ABC transporter - Aquifex aeolicus >gi|2984365|gb|AAC07884.1|
(AE000776) ABC transporter [Aquifex aeolicus]
Length = 251
Score = 161 bits (402), Expect = 1e-38
Identities = 91/258 (35%), Positives = 153/258 (59%), Gaps = 10/258 (3%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M+LL+V+NL ++YR + + VSFEV GE+ + GESG GKS+++ +++ PP
Sbjct: 1 MSLLEVKNLNLWYREK----QVLFDVSFEVKIGEILCIVGESGSGKSSILFTILRLLPPY 56
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GS F GR+L+ L E++ I+ E+ ++ Q L+P + + + H
Sbjct: 57 ARVSGSVKFLGRELLKLSEREMKSIRGKEVGMVFQEPSLYLDPLFTVGSQIEETYLSHFK 116
Query: 121 ADRREVEELLRERLSMVKLSPRVAD---MYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
A RRE E + + + P+ + MYP +LSGG++QR + + + P L++ADE
Sbjct: 117 AGRREAYEACIKAMKKAGI-PKPEEKYRMYPHQLSGGLKQRVCIANAIVCEPKLVLADEP 175
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T+ALDV+ QR ++ L + +EG K++I +THD ++ ++ DRV+V+ GKVVE G +
Sbjct: 176 TTALDVSVQRRILALFRNMKEEG--KAVILITHDFGVVAEVGDRVIVLKDGKVVEEGDVF 233
Query: 238 EVLENPAHPYTQLLLNSL 255
E+ +NP H YT+ LL+++
Sbjct: 234 EIFDNPKHEYTKKLLSAI 251
>gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T45539 moaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665715|gb|AAB88475.1| (AF242881) moaD
[Agrobacterium tumefaciens]
Length = 588
Score = 160 bits (401), Expect = 2e-38
Identities = 96/258 (37%), Positives = 149/258 (57%), Gaps = 8/258 (3%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
++L V+NL V + G + V +SF++ G V GESG GKS +++ P
Sbjct: 5 SVLSVKNLNVAF----GKKQVVQDLSFDIAPGSTLAVVGESGSGKSVTSLAIMGLLPVGV 60
Query: 62 YKG-GSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
K GS GR+L+SL E+ I+ ++S+I Q M +LNP +++ + + R H
Sbjct: 61 AKASGSIQLNGRELLSLSESEMCGIRGGKISMIFQEPMTSLNPVQKVGFQIGEAIRIHRG 120
Query: 121 ADRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+E+ + E L V + + R D YP SGGMRQR + ++ NP L+IADE T
Sbjct: 121 LRGKELRNAVLEMLKKVGIPDAERRIDNYPHTFSGGMRQRVMIAMALACNPALIIADEPT 180
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALDVT Q ++ELL +E V +++F+THD+ ++ +IADRV+VM G+VVE GP++
Sbjct: 181 TALDVTVQAQILELLKQLQRETNV-ALLFITHDMGVVAEIADRVLVMRGGQVVESGPVDS 239
Query: 239 VLENPAHPYTQLLLNSLP 256
V P PYT++L+ + P
Sbjct: 240 VFTRPESPYTKVLIEAAP 257
Score = 146 bits (364), Expect = 4e-34
Identities = 96/263 (36%), Positives = 143/263 (53%), Gaps = 16/263 (6%)
Query: 3 LLDVRNLRVYYRTPV---------GYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL 53
+L+VR+L V R P+ G V AV+ SF +G+GE G+ GESG GKST+ ++
Sbjct: 286 ILEVRDLTV--RFPLRGGLLGNVQGNVHAVEKASFAIGKGETLGLVGESGSGKSTIGKAI 343
Query: 54 ILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
I P GGS + GR + L ++ ++ +I Q +L+ + I + +
Sbjct: 344 IDLAPRF---GGSIVVDGRTIDYADEKSLAVLR-RDVQMIFQDPFGSLDSRQTIGSAIVE 399
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
HG A RE+ E + L V L P A P E SGG RQR + + ++P L+I
Sbjct: 400 PMYVHGIASGRELREKMEWLLEKVGLDPARASSLPHEFSGGQRQRICIARALSMSPKLII 459
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
ADE SALDV + +IEL+ E V S +F++HD+A + +I RV VMY G++VEI
Sbjct: 460 ADEAVSALDVAIKGQIIELMMDLQSEFGV-SYLFISHDMAAVEKICTRVAVMYFGELVEI 518
Query: 234 GPMEEVLENPAHPYTQLLLNSLP 256
G + V+ P H YT+ LL+++P
Sbjct: 519 GGRDNVIGRPGHSYTKRLLSAVP 541
>gi|10954942 Probable accC [Agrobacterium tumefaciens]
>gi|6498295|dbj|BAA87747.1| (AB016260) Probable accC
[Agrobacterium tumefaciens]
Length = 339
Score = 158 bits (395), Expect = 1e-37
Identities = 113/325 (34%), Positives = 162/325 (49%), Gaps = 24/325 (7%)
Query: 3 LLDVRNLRVYYRTPVG-YVR-----AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
LL R + +R G +V+ AV+ + E+ E V ESG GKSTL L+
Sbjct: 5 LLQARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVSVVRESGSGKSTLGRLLLGL 64
Query: 57 KPPMEYKGGSAIFKG---RDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
E G +F+G D + RK E S++ Q ++ALNP I + + +
Sbjct: 65 TSTTE---GEVLFEGLAHTDRSARDWSTFRK----ETSLVQQNPLSALNPQMTIGEQIAE 117
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
H A+R + L V LS + + YP ++SGG RQR + + +L+P L+I
Sbjct: 118 AVWVHRVANRAGARDRAATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALILDPKLVI 177
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE SALDV+ Q V+ LL QE + + +F+THDL ++R + DR++VMY G+VVE
Sbjct: 178 FDEAVSALDVSVQAQVVALLRQLWQE-LDLAYVFITHDLRIVRHLVDRIVVMYLGRVVET 236
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMG--VHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
G ++ V P HPYT+ LL S+P M V + G + GC F +RCP
Sbjct: 237 GDIKSVYAWPRHPYTRALLASVPTMDPTVRNIEPPIKG----ELDAGKVMTGCAFRSRCP 292
Query: 292 FAMEDCRDVEPKLVKVGRDHYAACH 316
FA+E C P L G AACH
Sbjct: 293 FAIERCAKETPLLRPAG-GQLAACH 316
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 157 bits (392), Expect = 2e-37
Identities = 93/303 (30%), Positives = 164/303 (53%), Gaps = 23/303 (7%)
Query: 20 VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSLPR 79
V AV+ VSFEV + + G+ GESGCGKST + S++ P G+ F G+++ L +
Sbjct: 33 VNAVNNVSFEVEKNKTLGLVGESGCGKSTTLRSIMQLYTPTS---GNIYFNGKNITKLSK 89
Query: 80 DELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY-----ADRREVEELLRERL 134
EL K + ++ ++ Q +L+P IK+I+ + + ++E+E+ + E
Sbjct: 90 KELLKTK-KDMQMVFQDPHTSLDPRMTIKEIIAEPLEIYNENKILPKTKQEIEQRVNELT 148
Query: 135 SMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLH 194
+V L + YP E SGG RQR + + LNP LL+ DE SALDV+ + ++ LL
Sbjct: 149 DIVGLHKSMLTRYPHEFSGGQRQRIGIARALALNPKLLLLDEAVSALDVSIRAQILNLLK 208
Query: 195 HFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNS 254
+E + S +F++HDLA+++ ++D++ VMY G ++E+ P E + NP HPYT++L+ S
Sbjct: 209 ALQKEFNL-SYLFISHDLAVVKYMSDKIAVMYLGVILELAPRETLFSNPIHPYTKMLIAS 267
Query: 255 LPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAA 314
+P + ++ + + ++ + + V PKL +V +DH+ +
Sbjct: 268 IPEINPEKRKNKNIKLDEQTLANIR-------------KIHLSTQVHPKLEEVEKDHFVS 314
Query: 315 CHL 317
+L
Sbjct: 315 KYL 317
>pir||T03432 probable transport protein accC - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153179|gb|AAC17199.1| (AF010180) AccC
[Agrobacterium tumefaciens]
Length = 338
Score = 156 bits (391), Expect = 3e-37
Identities = 113/325 (34%), Positives = 163/325 (49%), Gaps = 25/325 (7%)
Query: 3 LLDVRNLRVYYRTPVG-YVR-----AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
LL R + +R G +V+ AV+ + E+ E GV GESG GKSTL L+
Sbjct: 5 LLQARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVGVVGESGSGKSTLGRLLLGL 64
Query: 57 KPPMEYKGGSAIFKG---RDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
E G +F+G D + RK E S++ Q ++ALNP I + + +
Sbjct: 65 TSTTE---GEVLFEGLAHTDRSARDWSTFRK----ETSLVQQNPLSALNPQMTIGEQIAE 117
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
H A+ + L V LS + + YP ++SGG RQR + + +L+P L++
Sbjct: 118 AVWVHRVANAG-ARDRAATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALILDPKLVV 176
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE SALDV+ Q V+ LL QE + + +F+THDL ++R + DR++VMY G+VVE
Sbjct: 177 FDEAVSALDVSVQAQVVALLRQLWQE-LDLAYVFITHDLRIVRHLVDRIVVMYLGRVVET 235
Query: 234 GPMEEVLENPAHPYTQLLLNSLPRMG--VHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
G ++ V P HPYT+ LL S+P M V + G + GC F +RCP
Sbjct: 236 GDIKSVYAWPRHPYTRALLASVPTMDPTVRNIEPPIKG----ELDAGKVMTGCAFRSRCP 291
Query: 292 FAMEDCRDVEPKLVKVGRDHYAACH 316
FA+E C P L G AACH
Sbjct: 292 FAIERCAKETPLLRPAG-GQLAACH 315
>emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 388
Score = 156 bits (390), Expect = 4e-37
Identities = 108/330 (32%), Positives = 169/330 (50%), Gaps = 18/330 (5%)
Query: 3 LLDVRNLRVYYRTPVGY---VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
+L VRNL V + P G+ + V GV +V GE+ G+ GESG GKS +LI
Sbjct: 44 ILKVRNLHVSF--PQGHKKSIHIVRGVDLDVHRGEIIGLVGESGSGKSVTSKTLINVNES 101
Query: 60 MEYKGGSAIFKGRDLMSLPRDEL-RKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH 118
+L ++ + + + I+ ++ IPQ + +LNPT+ + + D +
Sbjct: 102 GIISADQIQIGEYELTNIKKQKYWQYIRGQKIGYIPQDPLTSLNPTRTVGKQLLDALNNN 161
Query: 119 GYADRREVEELLRERLSMVKL-----SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
E + ++K + ++ YP LSGGM+QR + + L P+L+I
Sbjct: 162 EDWKNSTYTEKKNYLIGLLKTFGLRSAEKIFYAYPHTLSGGMKQRIVITMVVALKPELII 221
Query: 174 ADEITSALDVTTQRVVIELLHHFMQE-GIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
ADE T+ALD T Q V+ L Q+ GI SII ++H+++++ + D + VMYAG++VE
Sbjct: 222 ADEPTTALDPTVQASVLALFEDIRQKMGI--SIILISHNISVIAKFCDYIYVMYAGRIVE 279
Query: 233 IGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPF 292
G +E+ NPAHPYT L++++P K E+L I G P + N P G F R +
Sbjct: 280 KGTKQEIFTNPAHPYTWALISAIPES----KDEKLYTIQGTPPDMANLPLGDPFVYRNDY 335
Query: 293 AMEDCRDVEPKLVKVGRDHYAACHLLGGES 322
A+E EP L+ + H AA LL E+
Sbjct: 336 ALEIDYLKEPPLIPITETHAAATWLLSPEA 365
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 155 bits (388), Expect = 6e-37
Identities = 105/308 (34%), Positives = 169/308 (54%), Gaps = 20/308 (6%)
Query: 20 VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPMEYKGGSAIFKGRDLMSL-P 78
+RA++ VSF++ + V GESG GKST + P G +KGRD+ +
Sbjct: 31 MRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTS---GVIEYKGRDIQDIVS 87
Query: 79 RDELRKIQYSE-LSIIPQYAMNALNPTKRIKDIVWDLAREHGYA---DRREVEELLRERL 134
RD+L + Y E + ++ Q +LNPT I + H +++E+EE + E L
Sbjct: 88 RDDL--MHYREGVQMVWQDPFGSLNPTHTIFHHIARPLLIHKKVTPGNKKELEERVYELL 145
Query: 135 SMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIEL 192
V L P A YP +LSGG RQR + + + ++++ADE TS LDV+ + V+ L
Sbjct: 146 EQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNL 205
Query: 193 LHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLL 252
+ E + S++++THD+A R IA+ + VMY G +VE G +E++ +P HPYT+LL+
Sbjct: 206 MEEMKFERQM-SLLYITHDIATARYIAEDLAVMYVGHMVEWGDTDEIIHDPQHPYTKLLV 264
Query: 253 NSL--PRMGVHYKRERLSGIPGYPISLLNPPK-GCRFYTRCPFAMEDCRDVEPKLVKVGR 309
+++ P+ +H E+L G G I L P GC F RC +A CR+ P++ ++
Sbjct: 265 SAVPDPKKSIH---EKLEGNKG-EIPLWTPNSVGCPFAGRCLYASAKCREALPEVTQLSD 320
Query: 310 DHYAACHL 317
+H+ C+L
Sbjct: 321 NHFVRCYL 328
>dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 308
Score = 154 bits (386), Expect = 1e-36
Identities = 94/266 (35%), Positives = 150/266 (56%), Gaps = 14/266 (5%)
Query: 1 MALLDVRNLRVYYRTP-------VGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL 53
M L V +L+V++ VGY +AVDGVS E+ EG+ +G+ GESG GK+T ++
Sbjct: 1 MGFLKVEDLKVHFPIKGGVIPHTVGYNKAVDGVSLELEEGQTYGLVGESGSGKTTTGRAI 60
Query: 54 I-LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVW 112
I L K G +F G+D+ + + I+ + + +I Q ++LNP KR+ DI+
Sbjct: 61 IGLNK----LTAGHILFDGQDITKQLKKKKNDIRRN-IQMIFQDPYSSLNPKKRVLDIIA 115
Query: 113 DLAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
+ R + E + + E L +V LS YP E SGG RQR + + L P L+
Sbjct: 116 EPLRNFEKLSKLEERKRVEELLEIVGLSRESIFKYPHEFSGGQRQRIGIARAIALKPKLI 175
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
IADE SALDV+ Q V+ + +E + +F++HDL ++R + DR+ +MY G++VE
Sbjct: 176 IADEPVSALDVSVQAQVLNFMKDIQKE-FNLTYLFISHDLGIIRHMCDRIGIMYRGRLVE 234
Query: 233 IGPMEEVLENPAHPYTQLLLNSLPRM 258
G +++ E+P H YT+ L+ ++P M
Sbjct: 235 EGVRDDIYESPQHIYTKRLIAAIPDM 260
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 153 bits (384), Expect = 2e-36
Identities = 89/241 (36%), Positives = 138/241 (56%), Gaps = 5/241 (2%)
Query: 80 DELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYAD-RREVEELLRERLSMVK 138
DE R ++ I+ Q M++LNP + DI+ + HG A R E ++ ++ L V
Sbjct: 148 DEKRMKFRRKIQIVFQDPMSSLNPRMTVGDILTEPILFHGLAKTREEAVDMAKDLLKSVG 207
Query: 139 LSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQ 198
L + YP + SGG RQR + + +NP+++I DE T++LDV+ Q VI L +Q
Sbjct: 208 LKEYHLERYPHQFSGGQRQRIAIARAISINPEIVILDEPTASLDVSVQAQVINLFLK-LQ 266
Query: 199 EGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNS--LP 256
E + +F++HDL L+R I+ V +MY G++VE+G +E+ +NP HPYTQ LL++ +P
Sbjct: 267 EEKGFTYLFISHDLGLVRFISHEVGIMYLGRIVEMGNTDEIFDNPLHPYTQALLSAVPVP 326
Query: 257 RMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAACH 316
V R+R+ G P S +N P GC F+ RCP+ M C P + ++ H+ ACH
Sbjct: 327 DPKVERTRKRIILRGGVP-SPINRPTGCFFHPRCPYKMPVCEKEYPVMKEISPGHWVACH 385
Query: 317 L 317
L
Sbjct: 386 L 386
>sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|1075118|pir||D64134 peptide transport system
ATP-binding protein HI1641 - Haemophilus influenzae
(strain Rd KW20) >gi|1574489|gb|AAC23288.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapD)
[Haemophilus influenzae Rd]
Length = 349
Score = 153 bits (382), Expect = 3e-36
Identities = 106/329 (32%), Positives = 177/329 (53%), Gaps = 20/329 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MALLD+ NL + +T G ++ VDGV+ + EGE+ G+ GESG GKS L+ +I
Sbjct: 1 MALLDICNLNIEIQTSNGRIKIVDGVNLSLNEGEISGLVGESGSGKS-LIAKVICNAIKE 59
Query: 61 EYKGGSAIFKGRD--LMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLA-- 115
+ + F+ D L+ L ++ RK+ E+S+I Q ++ L+P+++I K ++ ++
Sbjct: 60 NWIITADRFRFHDVELLKLSPNKRRKLVGKEISMIFQNPLSCLDPSRKIGKQLIQNIPNW 119
Query: 116 -------REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLN 168
+ G+ RR +E L R +K + YP EL+ G Q+ + ++
Sbjct: 120 TFKNKWWKWFGWKKRRAIELLHRVG---IKDHRDIMASYPNELTEGEGQKVMIAMAVANQ 176
Query: 169 PDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAG 228
P LLIADE T+AL+ TT V LL M + +I+ ++D+ + + D++ V+Y G
Sbjct: 177 PRLLIADEPTNALESTTALQVFRLLSS-MNQNQGTTILLTSNDIKSISEWCDQISVLYCG 235
Query: 229 KVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYK-RERLSGIPGYPISLLNPPKGCRFY 287
+ E P E ++E+P HPYTQ L+N++P + +L + G L P GCR
Sbjct: 236 QNTESAPTEILIESPHHPYTQALINAVPDFTQPLGFKTKLGTLEGTAPILEQMPIGCRLG 295
Query: 288 TRCPFAMEDCRDVEPKLVKVGRDHYAACH 316
RCPFA + C + +P+ +K+ + H +CH
Sbjct: 296 PRCPFAQKKCME-KPRRLKI-KQHEFSCH 322
>dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus]
Length = 331
Score = 152 bits (379), Expect = 7e-36
Identities = 103/326 (31%), Positives = 169/326 (51%), Gaps = 14/326 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M LLD+R+L + TP G V+AVD +S + EGE+ G+ GESG GKS + +++ + K
Sbjct: 1 MPLLDIRHLTIEIETPQGLVKAVDRMSLTLNEGEIRGLVGESGSGKSLVAKAIVGVSKDN 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPT----KRIKDIVWDLA 115
DL+ L E R++ ++++I Q L+P+ +++ + + A
Sbjct: 61 WRITADRMRLGNIDLLQLTPKERRRVIARDIAMIFQEPSTCLDPSEEVGRQLIESIPSRA 120
Query: 116 REHGYADR---REVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
E + +R R+ + + +K R+ YP EL+ G Q+ + ++ P LL
Sbjct: 121 FEGKWWERFKWRKKQAIALLHKVGIKDHKRLMGSYPYELTDGECQKVMIAMAIATKPKLL 180
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
IADE T+ LD TQ ++ LL Q +I+ + HDLA + Q A R+ VMY G+ VE
Sbjct: 181 IADEPTNDLDPITQSQILRLLSRMNQLNNT-TILLIGHDLATITQWAGRITVMYCGQSVE 239
Query: 233 IGPMEEVLENPAHPYTQLLLNSLPRMG--VHYKRERLSGIPGYPISLLNPPKGCRFYTRC 290
+++ P HPYT LL ++P V +K ++L +PG L + P GCR RC
Sbjct: 240 SADTSKIIAAPKHPYTDALLKAMPDFNDWVPHK-QKLQSLPGSIPPLQHLPIGCRLGPRC 298
Query: 291 PFAMEDCRDVEPKLVKVGRDHYAACH 316
P+A + C ++ P ++ ++H CH
Sbjct: 299 PYAQKQCVEI-PHTRRI-KNHKFNCH 322
>dbj|BAB05796.1| (AP001514) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 274
Score = 150 bits (374), Expect = 3e-35
Identities = 89/266 (33%), Positives = 150/266 (55%), Gaps = 5/266 (1%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M LL+V NL V+ + + + SF++ + + GESG GKS S++ P
Sbjct: 1 MNLLEVENLNVWDQHTNQVI--IHNSSFQLKQQSCLAIVGESGSGKSVTCRSIMRLNKPS 58
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+ G+ +FKG +L L E+R + + ++ Q M A +PT I + + +H
Sbjct: 59 IRQSGNILFKGENLHHLSEKEMRSKRGKNICMVLQNGMRAFDPTCVIGIHLKETLSQHTV 118
Query: 121 ADRREVEELLRERLSMVKLSPRVADM--YPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ +E+EE + + V L + M YP +LSGGM QR + ++ +L PD++IADE T
Sbjct: 119 WNNKEIEEKMAFAMESVMLKNPIEIMNKYPHQLSGGMLQRIMIALALVLEPDIIIADEPT 178
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ALD +Q V+E L ++E + SI+FV+HDL ++++IAD V+VM G++VE G +
Sbjct: 179 TALDTISQFEVVEQLIQ-LRERVESSILFVSHDLGVVKRIADDVLVMKDGEIVERGTTQT 237
Query: 239 VLENPAHPYTQLLLNSLPRMGVHYKR 264
+ +P YT+ L+++ +G H+KR
Sbjct: 238 IFSDPQKDYTKYLVSTRQALGDHFKR 263
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 149 bits (372), Expect = 5e-35
Identities = 101/337 (29%), Positives = 176/337 (51%), Gaps = 29/337 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVR-----AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI- 54
M L++++ + V + VG + A+ VS + +G++ V GESG GK+TL ++
Sbjct: 1 MGLMELKGVSVIFEDKVGLFKKRKFYALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVG 60
Query: 55 LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
L+KP G ++ G ++ R +K + ++ +IPQ + L K +++I+
Sbjct: 61 LQKPT----SGEVVYDGYNIWKNKRKIFKKYR-KDVQLIPQDPYSTLPFNKTVEEILVAP 115
Query: 115 AREHGYADRREVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
++ E+ + L L +VKL+P YP +LSGG +QR ++ S +NP ++
Sbjct: 116 ILRWEKINKDELRKRLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVNPRII 175
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQI-----ADRVMVMYA 227
+ADE + +D + + ++ L ++ + +++F+THD+ + R +VM+A
Sbjct: 176 VADEPVTMVDASLRIGILNTLAE-IKNRLNLTMVFITHDIPIARYFYHLFDKGNTIVMFA 234
Query: 228 GKVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFY 287
G++VE +EE+L++P HPYT L+ P + YK + I+ KGC +
Sbjct: 235 GRIVERADLEEILKDPLHPYTNDLIKLTPSIDNLYKEINVK------INYERVEKGCPYR 288
Query: 288 TRCPFAMEDCRDVEPKLVKVGRDHYAACHLLG--GES 322
RCPFAM+ C++ EPKL K H AC L G GES
Sbjct: 289 LRCPFAMDICKNEEPKLFKY--SHEVACFLYGKVGES 323
>pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656199|gb|AAF94833.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 148 bits (370), Expect = 8e-35
Identities = 99/325 (30%), Positives = 160/325 (48%), Gaps = 12/325 (3%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M LLD+R+L + TP G V+AVD +S + EGE+ G+ GESG GKS + +++ + K
Sbjct: 1 MPLLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKEN 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
DL+ L E R++ ++++I Q L+P++ + + +
Sbjct: 61 WRVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRT 120
Query: 120 YADR-------REVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
+ R R+ + + +K + YP EL+ G Q+ + ++ P LL
Sbjct: 121 FEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLL 180
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
IADE T+ +D TQ ++ LL Q SI+ + HDL + Q ADR+ VMY G+ VE
Sbjct: 181 IADEPTNDVDPITQSQILRLLSRMNQVNNT-SILLIGHDLTTITQWADRITVMYCGQSVE 239
Query: 233 IGPMEEVLENPAHPYTQLLLNSLPRMGVHY-KRERLSGIPGYPISLLNPPKGCRFYTRCP 291
+++ P HPYT LL ++P +++L +PG L + P GCR RCP
Sbjct: 240 SAETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRCP 299
Query: 292 FAMEDCRDVEPKLVKVGRDHYAACH 316
+A C VE + ++H +CH
Sbjct: 300 YAQRQC--VEVPHSRWVKNHKFSCH 322
>pir||F64557 dipeptide transport ATP-binding protein dppF - Helicobacter pylori
(strain 26695) >gi|2313400|gb|AAD07371.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Helicobacter pylori 26695]
Length = 268
Score = 145 bits (363), Expect = 5e-34
Identities = 85/264 (32%), Positives = 148/264 (55%), Gaps = 11/264 (4%)
Query: 1 MALLDVRNLRVYYRT------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
M LL+++ L+ Y P + A++G+SFEV + EV + GESGCGKST L
Sbjct: 1 MKLLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILA 60
Query: 55 LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
+ G+ F G+ + + + + ++ +I Q ++LNP ++ +I+ +
Sbjct: 61 GIE---RQDSGAIYFNGKRHLHFSKQDWFDYR-KKVQMIFQDPYSSLNPRWKVGEIIAEP 116
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
+ + ++E++ + E + V L D YP + SGG RQR + + +L+P ++I
Sbjct: 117 LLLNSHFSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVIC 176
Query: 175 DEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
DE SALDV+ Q V+ LL +E + + IF++HDL ++ I+D+++VM G++VE G
Sbjct: 177 DEPVSALDVSIQAQVLNLLLDLQKE-MGLTYIFISHDLGVVEHISDKIIVMNQGQIVETG 235
Query: 235 PMEEVLENPAHPYTQLLLNSLPRM 258
++ V+ P HPYTQ LLN++P +
Sbjct: 236 DVDSVISAPKHPYTQKLLNAVPHL 259
>pir||A71952 dipeptide transport system ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4154801|gb|AAD05857.1|
(AE001465) DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 268
Score = 145 bits (363), Expect = 5e-34
Identities = 85/264 (32%), Positives = 148/264 (55%), Gaps = 11/264 (4%)
Query: 1 MALLDVRNLRVYYRT------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
M LL+++ L+ Y P + A++G+SFEV + EV + GESGCGKST L
Sbjct: 1 MKLLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILA 60
Query: 55 LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
+ G+ F G+ + + + + ++ +I Q ++LNP ++ +I+ +
Sbjct: 61 GIE---RQDSGAIYFNGKRHLHFSKQDWFDYR-KKVQMIFQDPYSSLNPRWKVGEIIAEP 116
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
+ + ++E++ + E + V L D YP + SGG RQR + + +L+P ++I
Sbjct: 117 LLLNSHFSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVIC 176
Query: 175 DEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
DE SALDV+ Q V+ LL +E + + IF++HDL ++ I+D+++VM G++VE G
Sbjct: 177 DEPVSALDVSIQAQVLNLLLDLQKE-MGLTYIFISHDLGVVEHISDKIIVMNQGQIVETG 235
Query: 235 PMEEVLENPAHPYTQLLLNSLPRM 258
++ V+ P HPYTQ LLN++P +
Sbjct: 236 DVDSVISAPKHPYTQKLLNAVPHL 259
>pir||A82876 oligopeptide transport system permease protein UU560 [imported] -
Ureaplasma urealyticum
>gi|6899566|gb|AAF30973.1|AE002154_9 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 506
Score = 144 bits (359), Expect = 2e-33
Identities = 102/323 (31%), Positives = 162/323 (49%), Gaps = 13/323 (4%)
Query: 5 DVRNLRVYYRTPV---GYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPM 60
++ N+R+ + P + S + EGEV + GESG GKS + L L
Sbjct: 161 EIENVRLTFTNPSKPNDRALVLRNTSVQFYEGEVHAIIGESGSGKSVITSLLYGLAGKNA 220
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQY--SELSIIPQYAMNALNPTKRI-KDIVWDLARE 117
+ G + ++ + K +Y +S + Q M+ LNPT +I K I+ +
Sbjct: 221 NVEEGKILLYNNEVQDFSFKDWEKSRYLGKVISAVFQNPMSTLNPTMKIGKQIMEGMLIN 280
Query: 118 HGYADRREVEELLRERLSMVKLS--PRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
R+E E L + K++ + ++YP ELSGGM QR + L+P +L+ D
Sbjct: 281 GIVKTRKEAYNKSIEYLKLTKINNPEEIMELYPHELSGGMIQRVVIASIVSLHPKILVLD 340
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E T+ALD T Q +V++++ +QE IIF+THDL ++ IA+ + +MYAG+++E G
Sbjct: 341 EPTTALDPTVQALVLDVIRE-LQEKFKMCIIFITHDLGVVASIANYISIMYAGQIIEEGQ 399
Query: 236 MEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAME 295
+E+L P HPYT L+ S+P + K +RL+ I G S LN G F R +A+
Sbjct: 400 RDEILWYPQHPYTWGLIMSMPDVN---KGDRLATIKGSVPSRLNDIVGDAFAIRNDYALT 456
Query: 296 DCRDVEPKLVKVGRDHYAACHLL 318
+ EP++ V H LL
Sbjct: 457 RDFEHEPEMYHVSETHRVKSALL 479
>pir||T35941 probable ABC-type transport systsem ATP-binding protein -
Streptomyces coelicolor >gi|4158200|emb|CAA22763.1|
(AL035206) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 140 bits (349), Expect = 2e-32
Identities = 110/331 (33%), Positives = 155/331 (46%), Gaps = 32/331 (9%)
Query: 3 LLDVRNLRVYYRTPVGY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
+L VR L V + P G V AV F+V GE + GESGCGKS L +L+ P
Sbjct: 7 VLSVRGLSVRFLMPGGRRVAAVTDAHFDVAPGECLALIGESGCGKSVLASALLGLLPGNA 66
Query: 62 YKGGSAIFKGRDLMSLPRDEL-RKIQYSELSIIPQYAMNALNPTKRIK----DIVWDLAR 116
G A+ DL++ L R ++ + ++PQ L P + ++ + V +L
Sbjct: 67 QTAGRALLGDLDLLAADERTLARTVRGRLIGLVPQSPAAHLTPVRTVRSQLAETVAELTG 126
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
G R+ + E D +P ELSGG+ QRA ++ + + LL+ADE
Sbjct: 127 VRG--GRKALREAAGAAAERAAFPADHLDHHPHELSGGLAQRAATALALVGDAPLLLADE 184
Query: 177 ITSALDVT-TQRVVIELLHHFMQ-EGIV-------KSIIFVTHDLALLRQIADRVMVMYA 227
T+ LD R V EL H EG V ++++ +THDLA +IADRV VMYA
Sbjct: 185 PTTGLDRDLVDRTVDELRRHVDDAEGKVARGDAGSRALLMITHDLAAAARIADRVAVMYA 244
Query: 228 GKVVEIGPMEEVL--ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCR 285
G++VE+ P HPY++ LL++LP G + IPG P L P GC
Sbjct: 245 GRIVELADAGAFFGAPGPRHPYSRGLLDALPDRG-------FTPIPGLPPELGALPGGCA 297
Query: 286 FYTRCPFAMEDCRDVEPKLVKVGRDHYAACH 316
F RC A + C + P H ACH
Sbjct: 298 FAARCDRATDACAALPP------LRHAVACH 322
>dbj|BAB05519.1| (AP001513) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 253
Score = 131 bits (326), Expect = 1e-29
Identities = 90/262 (34%), Positives = 139/262 (52%), Gaps = 20/262 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M LL V +L Y T G V A+ VSF+V +GE G+ GESGCGKSTL L+ +
Sbjct: 1 MTLLSVDHLVKSYGT--GKV-AISDVSFDVNKGECLGLVGESGCGKSTLARCLLRIE--- 54
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD------- 113
GS FK + + L LR + +L + Q ALNP ++KD + D
Sbjct: 55 SIDRGSITFKHQSIERLKERRLRPFR-KDLQAVFQNPTAALNPKLKVKDSLLDPYDQYKQ 113
Query: 114 --LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDL 171
R Y + + +R+ L V+L +A+ YP ELSGG RQR T+ + + P L
Sbjct: 114 GLKLRHFSYTSK---DAFVRQLLEAVELPSSLAERYPHELSGGQRQRVTIARAISIEPAL 170
Query: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
+I DE T++LDV +Q ++ LL ++ + + +F++HDLA + Q++ R++VM G V
Sbjct: 171 IILDEPTASLDVISQGAILRLLSD-LRNTLNVAYLFISHDLAAVEQMSQRIIVMKDGTFV 229
Query: 232 EIGPMEEVLENPAHPYTQLLLN 253
+ + + HPYT+ L++
Sbjct: 230 DEFQSDHLFSEGRHPYTKELIS 251
>dbj|BAB04290.1| (AP001509) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 271
Score = 116 bits (289), Expect = 3e-25
Identities = 80/262 (30%), Positives = 134/262 (50%), Gaps = 13/262 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVRA------VDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI 54
M+LL+VR++ YRT + + RA + VS + EG G+ G SG GKSTL ++
Sbjct: 1 MSLLEVRDVTHTYRTSLLFWRAKQRAPVLTNVSLSIEEGMCMGLLGTSGAGKSTLGKVIL 60
Query: 55 -LRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWD 113
L KP + G+ F+G+DL + R+++ +L ++ Q +++NP + I+ +
Sbjct: 61 GLAKP----QKGTVFFQGQDLYQMDPKSRRRVR-RDLQVVFQDCYSSVNPRMTAEQIIGE 115
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
+ E + + L MV L YP E SGG QR + + L P L++
Sbjct: 116 PLENYERLSASEQKRKIAHLLDMVGLRSDDMRKYPREFSGGQLQRINIARAIALKPKLIV 175
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE S+LD+ Q V++ELL ++ S +F+THD+ I+D + VM G+++E
Sbjct: 176 LDESVSSLDMVNQTVILELLRE-LKAAFGLSYLFITHDIKAAYSISDELAVMEKGQLIEQ 234
Query: 234 GPMEEVLENPAHPYTQLLLNSL 255
+ L + HP + LL+S+
Sbjct: 235 CKDKAQLFSSKHPAVKNLLSSI 256
>emb|CAB59828.1| (AJ012388) hypothetical protein [Lactococcus lactis]
Length = 368
Score = 115 bits (286), Expect = 6e-25
Identities = 72/264 (27%), Positives = 142/264 (53%), Gaps = 15/264 (5%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
A++++ NL V + V AV + + +G+++GV G SG GKSTLV ++ L + P E
Sbjct: 3 AIIELNNLSVQFHQKGRLVTAVKNATLHIEKGDIYGVIGYSGAGKSTLVRTINLLQKPTE 62
Query: 62 YK---GGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREH 118
+ G IF + + +LR+ + ++ +I Q+ N L+ ++ + L
Sbjct: 63 GQIVINGEKIFDSENPVKFTGAKLREFR-QKIGMIFQH-FNLLSEKTVFNNVAFALQHSQ 120
Query: 119 --------GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPD 170
Y ++E + + E L +V L+ ++D YP +LSGG +QR + + +P+
Sbjct: 121 IEDKNGKKRYLTKKEKNDKVTELLKLVDLAD-LSDKYPAQLSGGQKQRVAIARALANDPE 179
Query: 171 LLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
+LI+DE TSALD T +++LL + E + +++ +TH++ ++++IA++V VM G++
Sbjct: 180 ILISDEGTSALDPKTTNQILDLLKS-LHEKLGITVVLITHEMQVVKEIANKVAVMQNGEI 238
Query: 231 VEIGPMEEVLENPAHPYTQLLLNS 254
+E + ++ P T+ + +
Sbjct: 239 IEQNSLIDIFAQPKEALTKQFIET 262
>gi|11498288 glutamine ABC transporter, ATP-binding protein (glnQ)
[Archaeoglobus fulgidus] >gi|7442524|pir||H69334
glutamine transport protein glnQ - Archaeoglobus
fulgidus >gi|2649950|gb|AAB90561.1| (AE001058) glutamine
ABC transporter, ATP-binding protein (glnQ)
[Archaeoglobus fulgidus]
Length = 242
Score = 112 bits (278), Expect = 5e-24
Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 28/262 (10%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L++ +L + G + + GV+ +V +GEV + G SG GKSTL+ + + P
Sbjct: 1 MAQLEIIDLHKRF----GELEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPT 56
Query: 61 EYKGGSAIFKGRDLMSLPRD--ELRK---IQYSELSIIPQYA--MNALNPTKRIKDIVWD 113
G + G D+ + D ++R+ I + + ++ P N +IK +
Sbjct: 57 S---GKILLDGVDITNSKIDINKVRQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKM--- 110
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
+RE EEL L V L + AD YP +LSGG +QR + + +NP++++
Sbjct: 111 --------SKREAEELGMRLLEKVGLEDK-ADYYPAQLSGGQQQRVAIARALAMNPEVML 161
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE+TSALD + V++++ ++G+ +++ VTH++ R++ DRV+ M G +VE
Sbjct: 162 FDEVTSALDPELVKEVLDVMKQLARDGM--TMVVVTHEMGFAREVGDRVIFMDGGVIVEE 219
Query: 234 GPMEEVLENPAHPYTQLLLNSL 255
G E++ NP H T+ L+ +
Sbjct: 220 GKPEQIFSNPKHERTRKFLSMI 241
>pir||H72356 amino acid ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981110|gb|AAD35676.1|AE001734_3 (AE001734) amino
acid ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 242
Score = 110 bits (273), Expect = 2e-23
Identities = 73/257 (28%), Positives = 135/257 (52%), Gaps = 26/257 (10%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M +L + +L Y+ G + + G+ EV +GEV + G SG GKSTL+ + L +
Sbjct: 1 MTVLKIEDLHKYF----GKLYVLRGIDLEVKKGEVISIIGPSGSGKSTLLRCINLLE--- 53
Query: 61 EYKGGSAIFKGRDLMSLPRDELRK---IQYSELSIIPQYAM--NALNPTKRIKDIVWDLA 115
EY+ G FKG + + +R + + + ++ P ++ N ++K++ D
Sbjct: 54 EYQRGKIYFKGELITHRNINRIRSSIGMVFQQFNLFPHLSVLNNLTLAPMKVKNMQKD-- 111
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
E E ++ L V L ++ + P LSGG +QR + + +++P+L++ D
Sbjct: 112 ---------EAVEKAKKLLERVGLIEKINEK-PGNLSGGQQQRVAIARALMMDPELMLFD 161
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E TSALD + V++++ Q G+ +++ VTH++ R ++DRV+ M G++VE+GP
Sbjct: 162 EPTSALDPELVKEVLDVIKDLAQSGM--TMLIVTHEMRFARDVSDRVVFMDEGRIVEMGP 219
Query: 236 MEEVLENPAHPYTQLLL 252
E++ NP + T+ L
Sbjct: 220 PEKIFSNPENERTREFL 236
>pir||F82170 peptide ABC transporter, ATP-binding protein VC1684 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656200|gb|AAF94834.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 262
Score = 109 bits (271), Expect = 3e-23
Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 13/258 (5%)
Query: 2 ALLDVRNLRVYYRTPVGYVR-----AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
ALL+V NL + T G++R AV VSF + G+ G G++G GKSTL L
Sbjct: 3 ALLEVTNLHKDFVTRSGFLRKQIQHAVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAGM 62
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
P GG G L K+ + +I Q +LNP +I I+ +
Sbjct: 63 VAPT---GGEIRVNGELLEHKDYSTRCKL----IRMIFQDPNTSLNPRLQIGTILEGPLK 115
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
+ +++ L V L P A YP L+ G +QR + + +L P ++IADE
Sbjct: 116 RNTSMTPEARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIADE 175
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
+ LD+ + ++ L +QE + S ++V+ + +++ I D+++VM+ G VVE G
Sbjct: 176 ALNGLDMAMRSQILNLFLE-LQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGET 234
Query: 237 EEVLENPAHPYTQLLLNS 254
EVL +P HP TQ ++ S
Sbjct: 235 HEVLADPQHPITQRMIES 252
>pir||H82377 ABC transporter, ATP-binding protein VCA1101 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658548|gb|AAF96993.1| (AE004435) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 486
Score = 104 bits (258), Expect = 1e-21
Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 9/256 (3%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
ALL V+ L + V+ +SFE+ + + GE+G GKS L +++I P
Sbjct: 29 ALLSVQQLAI----STAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGL 84
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G G+ + E + +L+++PQ +ALNP R + V ++ R
Sbjct: 85 RSQGKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLV-MG 143
Query: 122 DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSAL 181
+ L V L ++ YP +LSGGM QR + +T LLIADE T L
Sbjct: 144 NHAASAALTDSAFQQVALHQDLSK-YPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGL 202
Query: 182 DVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLE 241
D + + +I LL + G +++ +THD+ + ++ ++VM G + E GP ++VL
Sbjct: 203 DASRRDQIIALLQAQLTRG---ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLS 259
Query: 242 NPAHPYTQLLLNSLPR 257
+P YT+ L+N+ PR
Sbjct: 260 HPQSDYTKALINADPR 275
Score = 83.5 bits (203), Expect = 3e-15
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 27/203 (13%)
Query: 24 DGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPMEYKGGSAIFKGR--DLMSLPRD 80
D +SF + GE+ G++G+SGCGKSTL L+ L KP +GR L ++P
Sbjct: 306 DSLSFTLSAGEILGISGDSGCGKSTLADLLLGLLKPS----------QGRIHRLQAIPLG 355
Query: 81 ELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYADRREVEELLRERLSMVKLS 140
+ K+ Q +AL + ++ ++ D+ R+H +R ++ LL ERL+ LS
Sbjct: 356 KALKLY--------QDPPSALAKSVTLQTLLEDVCRQHS-VERSQIPRLL-ERLA---LS 402
Query: 141 PRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSALDVTTQRVVIELLHHFMQEG 200
P + ++SGG QR ++ + L P LL+ADE TS LD T ++L+ QE
Sbjct: 403 PNLLSRKANQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQE- 461
Query: 201 IVKSIIFVTHDLALLRQIADRVM 223
I +++ ++HD L + RV+
Sbjct: 462 IGCALVLISHDKLALEKTCHRVL 484
>pir||A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981786|gb|AAD36307.1|AE001779_9
(AE001779) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 355
Score = 102 bits (253), Expect = 4e-21
Identities = 76/261 (29%), Positives = 128/261 (48%), Gaps = 25/261 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA + + ++ Y+ G VRA+DG+ V EGE + G SGCGK+TL+ + +
Sbjct: 1 MAQVKIDGVKKYF----GNVRALDGIDLVVNEGEFLVLLGPSGCGKTTLLRCIAGLE--- 53
Query: 61 EYKGGSAIFKGRDLMSL-PRDELRKIQYSELSIIPQYAM--NALNPTKRIKDIVWDLARE 117
+ GG F RD+ +L P+D + + ++ P + N P K K
Sbjct: 54 QVTGGKIFFNDRDVTNLPPKDRNISMVFQSYAVWPHMKVYDNIAYPLKLKK--------- 104
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+ E+E+ ++ ++ +S + D YP +LSGG RQR + + + P++L+ DE
Sbjct: 105 ---VPKEEIEKRVKWAADLLHIS-ELLDRYPAQLSGGQRQRVAVARAIVHEPEVLLMDEP 160
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
S LD RV + +QE I + I+VTHD + DR+ VM GK+ ++G
Sbjct: 161 LSNLDALL-RVKMRSELKKLQERIGVTTIYVTHDQTEAMTMGDRIAVMNQGKLQQVGTPS 219
Query: 238 EVLENPAHPYTQLLLNSLPRM 258
E+ +P + + + S P+M
Sbjct: 220 EIYHHPVNIFVAGFVGS-PQM 239
>dbj|BAA97047.1| (AB015765) compensate SapD [Vibrio alginolyticus]
Length = 263
Score = 102 bits (253), Expect = 4e-21
Identities = 78/258 (30%), Positives = 124/258 (47%), Gaps = 13/258 (5%)
Query: 2 ALLDVRNLRVYYRTPVGYVR-----AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILR 56
ALL+V NL + T + AV VSF + G+ G G++G GKSTL L
Sbjct: 3 ALLEVDNLSKQFVTRSRLFKRQVNEAVKPVSFTLEPGQTIGFIGQNGSGKSTLARMLA-- 60
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
+E G G L K+ + +I Q +LNP +I I+ +
Sbjct: 61 -GVVEPSSGEIRVNGERLEHKDYATRCKL----IRMIFQDPNTSLNPRIQIGRILEGPLK 115
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
+ + ++ L V L P A YP L+ G +QR + + +L P +++ADE
Sbjct: 116 RNTNMPPDARMQRVKNTLLRVGLLPEHAYFYPQMLAAGQKQRVCLARALILQPSIIVADE 175
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
+ LD+ + +I L +QE + S ++V+ + +++ I D+VMVM+ G+VVE G
Sbjct: 176 ALNGLDMAMRSQIINLFLE-LQEEMGLSFVYVSQHIGIVKHITDKVMVMHEGEVVEFGET 234
Query: 237 EEVLENPAHPYTQLLLNS 254
+VL +P HP TQ L+ S
Sbjct: 235 NQVLTSPEHPITQRLVES 252
>gi|11498623 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445942|pir||B69377 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2649576|gb|AAB90224.1| (AE001033) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 228
Score = 102 bits (251), Expect = 7e-21
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 9/233 (3%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M ++++RN+ YRT VRA+DGVS +V EGE + G SG GKSTL++ + P
Sbjct: 1 MKVVELRNVYKIYRTEYYEVRALDGVSMDVEEGEFVVIMGPSGSGKSTLLNLIGCLDKPT 60
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
E G + G + SL + L +++ + I Q N + ++++ +L
Sbjct: 61 E---GEVLINGVETSSLNDNRLTELRRDTIGFIFQ-TYNLIPTLTALENV--ELPMIFKG 114
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
RRE EE +E L V L + + P E+SGG +QR + + NP +L+ DE T
Sbjct: 115 VGRREREERAKELLKNVGLEKEM-NRKPNEMSGGQQQRVAIARALANNPKILLCDEPTGN 173
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
LD + V+E++ H E + ++I VTHD +L + DRV+ + GK+ +
Sbjct: 174 LDTKSGEQVMEIIRH-QNEVLGVTVILVTHDPSLAK-YGDRVIRLRDGKIESV 224
>gi|11499064 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445944|pir||D69433 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2649101|gb|AAB89781.1| (AE001001) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 226
Score = 98.7 bits (242), Expect = 8e-20
Identities = 80/233 (34%), Positives = 119/233 (50%), Gaps = 11/233 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL-ILRKPP 59
M ++++ ++ YRT V A+DGVS EV GE + G SG GKSTL++ + L KP
Sbjct: 1 MKVIELVDVYKIYRTAYYEVHALDGVSMEVEAGEFVAIMGPSGSGKSTLLNMIGCLDKPT 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G I G L EL K++ + I + L PT + V +L
Sbjct: 61 K----GEVIINGVKTSGLSDRELTKLRRDSIGFI--FQQYNLIPTLTALENV-ELPMIFR 113
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
R E E +E L +V + +AD P E+SGG +QR + + NP +L+ DE T
Sbjct: 114 GVARAERERRAKELLKVVGIE-ELADRRPREMSGGQQQRVAIARALANNPKILLCDEPTG 172
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
LD + R V+ +L + +E V +++ VTHD + L + ADRV+ + GKVVE
Sbjct: 173 NLDTKSGRQVMGILKNLNEENGV-TVVLVTHDPS-LSEYADRVIRIRDGKVVE 223
>sp|P45022|YA78_HAEIN PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN HI1078
>gi|1075335|pir||G64181 ABC-type transport protein
HI1078 - Haemophilus influenzae
>gi|1574632|gb|AAC22734.1| (U32788) amino acid ABC
transporter, ATP-binding protein [Haemophilus influenzae
Rd]
Length = 257
Score = 97.5 bits (239), Expect = 2e-19
Identities = 76/256 (29%), Positives = 126/256 (48%), Gaps = 16/256 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP- 59
M++L V N++ + + G+ FE+ +GEV + G SG GK+T + L L + P
Sbjct: 1 MSMLKVSNIQKNFNGN----HVLKGIDFEINKGEVVAILGPSGSGKTTFLRCLNLLERPE 56
Query: 60 ---MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
+E+ GS +S DEL+ + S + + QY L P + + V +
Sbjct: 57 QGILEFTDGSLKIDFSQKIS-KADELKLRRRSSM-VFQQYN---LFPHRSALENVMEGMV 111
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
D+ + E L V L + AD++P +LSGG +QR + + + PD+++ DE
Sbjct: 112 VVQKQDKAQAREKALSLLEKVGLKNK-ADLFPSQLSGGQQQRVGIARALAVKPDIILLDE 170
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
TSALD V++ L QEG ++I VTH++ + +ADRV++M G +VE
Sbjct: 171 PTSALDPELVGEVLQTLKMLAQEG--WTMIIVTHEMQFAKDVADRVILMADGHIVEQNTA 228
Query: 237 EEVLENPAHPYTQLLL 252
++ P H T+ L
Sbjct: 229 DKFFTCPQHERTKQFL 244
>pir||S77386 nitrate transport protein D-3 - Synechocystis sp. (strain PCC 6803)
>gi|1652568|dbj|BAA17489.1| (D90906) nitrate transport
protein NrtD [Synechocystis sp.]
Length = 332
Score = 97.5 bits (239), Expect = 2e-19
Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 22/244 (9%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
A L + N+ Y T G +DGV+ EV EGE + G SGCGKSTL++ + P +
Sbjct: 17 AFLAIENVSKVYPTAQGPYTVLDGVNLEVKEGEFICIIGHSGCGKSTLLNMVSGFNQPTQ 76
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G+ K + L++ P + + + Y L P K D V LA E Y
Sbjct: 77 ---GTVKLKNQ-LITAPGPD-------RMMVFQNY---CLLPWKSAYDNV-SLAVESVYP 121
Query: 122 D--RREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
D + E EEL+ L MV L+ A P ++SGGM+QR + + ++P++LI DE
Sbjct: 122 DKSKTEKEELVAHYLEMVGLT-EAAQKKPGQISGGMKQRVAIARALAISPEVLILDEPFG 180
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
ALD T+ + E L +E + +++ +THD+ +ADR+++M G +IG E+
Sbjct: 181 ALDAITKEELQEELLKIWRENNL-TVLMITHDIDEALFLADRLVMMTNGPSAKIG---EI 236
Query: 240 LENP 243
L+ P
Sbjct: 237 LDIP 240
>pir||E72378 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4980927|gb|AAD35506.1|AE001721_5
(AE001721) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 359
Score = 97.1 bits (238), Expect = 2e-19
Identities = 76/257 (29%), Positives = 129/257 (49%), Gaps = 20/257 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M + V NL+ Y+ G V+AVDGVSFEV +GE + G SGCGK+T +L++
Sbjct: 1 MPSIRVVNLKKYF----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTT---TLLMLAGIY 53
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLAREHG 119
+ G F + +P +Y E+ ++ + AL P + ++I + L
Sbjct: 54 KPTSGEIYFDDVLVNDIPP------KYREVGMV--FQNYALYPHMTVFENIAFPLRARR- 104
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ EVE+ + E ++ L + D P +LSGG +QR + + + P +L+ DE S
Sbjct: 105 -ISKDEVEKRVVE-IARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD + ++ + H QE + S ++VTHD A +A R+ V GK+V+ G +EV
Sbjct: 163 NLDANLRMIMRAEIKHLQQELGITS-VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Query: 240 LENPAHPYTQLLLNSLP 256
++P + + + + P
Sbjct: 222 YDSPKNMFVASFIGNPP 238
>gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . carboxy-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 103
Score = 96.3 bits (236), Expect = 4e-19
Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 221 RVMVMYAGKVVEIGPMEEVLENPAHPYTQLLLNSLP--RMGVHYKRERLSGIPGYPISLL 278
R+ VMY GKVVEIG EEV+ P HPYTQ LL ++P + K + G P+ L
Sbjct: 7 RIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLEL- 65
Query: 279 NPPKGCRFYTRCPFAMEDCRDVEPKLVKVGRDHYAACHL 317
PKGC FY+RCPFA + C++ P++ ++ DHY ACHL
Sbjct: 66 --PKGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHL 102
>sp|O30506|AOTP_PSEAE ARGININE/ORNITHINE TRANSPORT ATP-BINDING PROTEIN AOTP
>gi|11277315|pir||T44458 histidine/ornithine transport
protein aotP [imported] - Pseudomonas aeruginosa
>gi|11347446|pir||A83535 arginine/ornithine transport
protein AotP PA0892 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|2668599|gb|AAC71074.1| (AF012537)
ATPase [Pseudomonas aeruginosa]
>gi|9946792|gb|AAG04281.1|AE004523_9 (AE004523)
arginine/ornithine transport protein AotP [Pseudomonas
aeruginosa]
Length = 254
Score = 94.0 bits (230), Expect = 2e-18
Identities = 71/252 (28%), Positives = 131/252 (51%), Gaps = 21/252 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M L+V++L Y G + GVS G+V + G SG GKST + + L + P
Sbjct: 1 MYKLEVQDLHKRY----GSHEVLKGVSLAAKAGDVISIIGSSGSGKSTFLRCINLLEQP- 55
Query: 61 EYKGGSAIFKGRDLMSLP-RD------ELRKIQY--SELSIIPQYAMNALNPTKRIKDIV 111
G + G +L +P RD + R++Q S LS++ Q+ N + +++++
Sbjct: 56 --HAGKILLNGEELKLVPGRDGALKAADSRQLQRMRSRLSMVFQH-FNLWSHMSALENVI 112
Query: 112 WDLAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDL 171
G + + +E+ L+ V ++ R D YP +SGG +QR + + + P++
Sbjct: 113 EAPVHVLGVSKKEAIEKA-EHYLAKVGVAHR-KDAYPAHMSGGEQQRVAIARALAVEPEV 170
Query: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
++ DE TSALD V++++ QEG ++++ VTH++ R+++++++ ++ G V
Sbjct: 171 MLFDEPTSALDPELVGEVLKVMQDLAQEG--RTMVVVTHEMGFAREVSNQLVFLHKGLVE 228
Query: 232 EIGPMEEVLENP 243
E G +EVL NP
Sbjct: 229 EHGCPKEVLANP 240
>pir||S75652 ABC-type transport protein sll1878 - Synechocystis sp. (strain PCC
6803) >gi|1653298|dbj|BAA18213.1| (D90912) ABC
transporter [Synechocystis sp.]
Length = 368
Score = 93.6 bits (229), Expect = 3e-18
Identities = 72/250 (28%), Positives = 125/250 (49%), Gaps = 24/250 (9%)
Query: 2 ALLDVRNLRVYYR---TPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKP 58
++L V++L +R TPV + ++F + GE+ G+ G SGCGK+TL+ + +
Sbjct: 17 SVLTVQDLGKSFRGQSTPV-----LQKINFNLAPGEILGLLGPSGCGKTTLLRIIAGFET 71
Query: 59 PME---YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
P + G + G + ++ P + + + ++ P + +I + L
Sbjct: 72 PTSGTVHLEGDCV-SGENGLTPPEQRQTGMVFQDYALFPHLTIT--------DNIAFGLR 122
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
+ +R++++ + E L +V L+ + YP ELSGG +QR + + P+L++ D
Sbjct: 123 HKSQKLNRQQIQGRVAEVLHLVGLTG-LEKRYPHELSGGQQQRIALARALAPKPNLILLD 181
Query: 176 EITSALDVTT-QRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
E S LDV QR+ E+ H G + IFVTHD I+DR+ VMY G + +IG
Sbjct: 182 EPLSNLDVQVRQRLRHEIRHILKATGT--AAIFVTHDQEEAMAISDRIGVMYRGNLEQIG 239
Query: 235 PMEEVLENPA 244
EE+ +PA
Sbjct: 240 TPEEIYRSPA 249
>pir||B75076 daunorubicin resistance ATP-binding protein drra PAB1703 -
Pyrococcus abyssi (strain Orsay)
>gi|5458423|emb|CAB49911.1| (AJ248286) DAUNORUBICIN
RESISTANCE ATP-BINDING PROTEIN DRRA [Pyrococcus abyssi]
Length = 314
Score = 92.1 bits (225), Expect = 8e-18
Identities = 66/239 (27%), Positives = 122/239 (50%), Gaps = 13/239 (5%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M +L+V+++ + TP G V AV+ VSF GEV G+ G +G GK+T + + P
Sbjct: 1 MPILEVKSVTKKFPTPKGEVIAVNNVSFSANSGEVLGILGPNGAGKTTTLRMIATIYRP- 59
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G + G D + P + ++I Y ++ P L P ++D + R G+
Sbjct: 60 --DSGEVLVDGIDAVKNPLEVRKRIAY--MTQEPD-----LTPPLSVRDYIIYYFRFRGF 110
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+ +R+ ++ + L + L A P +LS G+++R + + + L+ DE T+
Sbjct: 111 S-KRDAKKHCEDILELFGLKTH-AHKKPFQLSTGLKRRVQLACALSSDVPLVFLDEPTAG 168
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
+D ++R EL+ +++ V ++I +HDL + +ADRV++M GK+V G +E+
Sbjct: 169 VDPRSKRKTWELIKEKLEDKGV-TVILTSHDLYEVEYLADRVIIMNQGKIVAEGSPKEL 226
>pir||E72757 probable phosphate transport ATP-binding protein pstB APE0050 -
Aeropyrum pernix (strain K1) >gi|5103438|dbj|BAA78959.1|
(AP000058) 253aa long hypothetical phosphate transport
ATP-binding protein pstB [Aeropyrum pernix]
Length = 253
Score = 91.7 bits (224), Expect = 1e-17
Identities = 75/267 (28%), Positives = 131/267 (48%), Gaps = 33/267 (12%)
Query: 1 MALLDVR--NLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILR 56
M L+DVR L V+ + G+SF+ G V + G SG GKSTL+ + ++
Sbjct: 1 MKLMDVRVSGLNVWITDK----HILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLID 56
Query: 57 KPPMEYKGGSAIFKGRDLMSLPRDELRK---IQYSELSIIPQ---YAMNALNPTKRIKDI 110
P G ++M +R+ + + E + P Y A+ P
Sbjct: 57 LIPGARVEGEVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGP------- 109
Query: 111 VWDLAREHGYA-DRREVEELLRERLSMVKLSPRVADM---YPVELSGGMRQRATMVVSTL 166
+ HG A +++E++E++ L M L V D YP +LSGG RQR ++ +
Sbjct: 110 -----KLHGLAKNKKELDEIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALA 164
Query: 167 LNPDLLIADEITSALD-VTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVM 225
L P +L+ DE T+ +D V+T ++ ++ + +E + ++I VTH +I+D+++ +
Sbjct: 165 LKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEE--MATVIIVTHTPQQAARISDQILFL 222
Query: 226 YAGKVVEIGPMEEVLENPAHPYTQLLL 252
Y G+V+E GP +E++ P H T+ L
Sbjct: 223 YEGRVIEYGPTKELVLRPRHELTKKFL 249
>pir||F71849 amino acid ABC transporter, ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4155696|gb|AAD06680.1|
(AE001537) AMINO ACID ABC TRANSPORTER, ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 91.3 bits (223), Expect = 1e-17
Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 18/260 (6%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
A+L+ + L+ Y+ + +DG++F + +GEV + G SGCGKST + L +
Sbjct: 3 AILETKGLKKTYQNHL----VLDGINFTLNKGEVAVILGPSGCGKSTFLKCL---NGLEK 55
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G +F+ +L + P +++ + Y L P + D ++
Sbjct: 56 IDEGEILFENTNL-NTPSTNWNQMRQKIGMVFQNY---ELFPHLNVLD---NILLAPLKV 108
Query: 122 DRREVEELLRERLSMVKL--SPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+R +E+L + + ++K YP ELSGG +QR +V S + P +++ DE+T+
Sbjct: 109 QKRSKDEVLSQAVELLKRVGLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTA 168
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
+LD + V+E++ + G+ S++ VTH++ ++IA +++ +GK+ E +E
Sbjct: 169 SLDPEMVKEVLEVILELAKTGM--SMVIVTHEMKFAQKIASKIVFFDSGKIAEENSAKEF 226
Query: 240 LENPAHPYTQLLLNSLPRMG 259
+P Q L + +G
Sbjct: 227 FNHPKSQRAQKFLETFHFLG 246
>pir||G81344 ABC transport system ATP-binding protein Cj0732 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968189|emb|CAB73006.1| (AL139076) ABC transport
system ATP-binding protein [Campylobacter jejuni]
Length = 329
Score = 90.5 bits (221), Expect = 2e-17
Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 20/233 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L ++N + Y + + + ++F +GE + G SGCGKSTL+ +
Sbjct: 1 MAYLKIKNFKKAYGDKIIF----EDINFSAKKGEFITLLGPSGCGKSTLLRCIA------ 50
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRI-KDIVWDLAREHG 119
G S I G+ +SL +L K+ + +I + AL P + +++ + L +
Sbjct: 51 ---GLSQINGGK--ISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKIKK- 104
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
D++++E+ +++ L +V+L A YP +LSGG QR + S ++ PDLL+ DE S
Sbjct: 105 -MDKKDIEKRVKKMLKLVELE-EYAKTYPHKLSGGQMQRVALARSLVIKPDLLLLDEPLS 162
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
ALD ++ + + +E + + IFVTHD +++D +++M GK+++
Sbjct: 163 ALDAKIRKYLRVQIKEIQKE-LELTTIFVTHDQEEALELSDTIILMNEGKIIQ 214
>emb|CAC11998.1| (AL445065) ABC transporter related protein [Thermoplasma
acidophilum]
Length = 334
Score = 89.3 bits (218), Expect = 5e-17
Identities = 64/234 (27%), Positives = 124/234 (52%), Gaps = 16/234 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
+ ++ NL Y G ++AVDG++ E+ E E++G+ G++G GK+T + L P
Sbjct: 6 LPIIKTENLTKIYP---GGIKAVDGLNIEIEEAEIYGLLGKNGAGKTTTIKMLTTAIDP- 61
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G+AI G DL ++++R+I + ++PQ + K ++++ +
Sbjct: 62 --TSGNAIIGGYDLRK-DKEKIRRI----IGVVPQ-DLTTDADLKGVENL--RMIASFYN 111
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
++E E+ +++ L +V LS + Y + SGGMR+R ++ + +P +L DE T
Sbjct: 112 IPKQEAEQRIKDLLEIVDLSD-WGNKYVSQYSGGMRKRLELICGLVNSPKILFLDEPTLG 170
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
LDV T+ + + + +E + +II +H L + Q+ADR+ ++ GK++ G
Sbjct: 171 LDVNTRSKMWKYIRDIQKE-LGVTIILTSHYLEEVDQLADRISIIDHGKILITG 223
>pir||D83356 probable ATP-binding component of ABC transporter PA2308 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948341|gb|AAG05696.1|AE004657_3 (AE004657) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 282
Score = 88.9 bits (217), Expect = 7e-17
Identities = 71/224 (31%), Positives = 110/224 (48%), Gaps = 15/224 (6%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
ALL V + + YRT VRA VSFEV + F + G SGCGKSTL+ ++ P E
Sbjct: 15 ALLAVDGVSLEYRTRSRVVRATQRVSFEVDPADRFVLLGPSGCGKSTLLKAVAGFITPSE 74
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G +G+ + + D R + + E +P P K ++ V R G
Sbjct: 75 ---GEIRLQGQAVRAPGPD--RIVVFQEFDQLP--------PWKTVRQNVLFPLRVSGQV 121
Query: 122 DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSAL 181
R E E E L V L+ A+ YP LSGGM+ R + + + P +L+ DE +AL
Sbjct: 122 TRDEAERRADECLEKVGLA-GFAEAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAAL 180
Query: 182 DVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVM 225
D T+R + E L +E + +++FVTH + + +R++++
Sbjct: 181 DALTRRKMQEELLRLWEE-VRFTLLFVTHSIEEALVVGNRILLL 223
>emb|CAC11290.1| (AL445063) probable ATP-binding protein [Thermoplasma acidophilum]
Length = 317
Score = 88.9 bits (217), Expect = 7e-17
Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 22/243 (9%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
A L++RN+ Y G + + +S + +GE F + G SG GKSTL+ ++ + P
Sbjct: 3 AKLELRNINKSY----GKFKVISDLSLTIEKGEFFVILGPSGTGKSTLLKIIVGIEQP-- 56
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKD-IVWDLAREHGY 120
G I G+D+ LP ++ +I + AL P + D I + L H
Sbjct: 57 -DSGKIIIDGKDVTKLPPNKR--------NIAMVFQNYALYPNMNVFDNIAFPLRMNHFR 107
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
R V E ++L + L D ++SGG +QR + + + NP L + DE S
Sbjct: 108 NISRRVHETA-QKLGIENL----LDKKVTQISGGQQQRVALARAIVRNPALFLLDEPLSN 162
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
LD + L QE + ++ +FVTHD + DR+ V+++GK +IG EE+
Sbjct: 163 LDARVRYAARNELKKIQQE-LDQTFLFVTHDQKEAEALGDRIGVLHSGKFEQIGSYEELY 221
Query: 241 ENP 243
+P
Sbjct: 222 NDP 224
>gb|AAC04471.1| (AF007800) MtlK [Pseudomonas fluorescens]
Length = 367
Score = 88.5 bits (216), Expect = 9e-17
Identities = 73/262 (27%), Positives = 127/262 (47%), Gaps = 25/262 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L ++NL+ + G+ + G+ EV + E G SGCGKSTL+ + +
Sbjct: 1 MANLKIKNLQKGFE---GF-SIIKGIDLEVNDKEFVVFVGPSGCGKSTLLRLIAGLE--- 53
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
E G+ GRD+ E+ + + YA+ ++ DLA
Sbjct: 54 EVSEGTIELDGRDIT-----EVTPAKRDLAMVFQTYALYPHMSVRKNMSFALDLAG---- 104
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
D++ VE + E +++L P + + P +LSGG RQR + + + NP + + DE S
Sbjct: 105 VDKQLVESKVNEAARILELGP-LLERKPKQLSGGQRQRVAIGRAIVRNPKIFLFDEPLSN 163
Query: 181 LDVTTQ---RVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
LD + R+ + LH +Q ++I+VTHD +AD+V+V+ +G++ ++G
Sbjct: 164 LDAALRVQMRLELARLHKELQA----TMIYVTHDQVEAMTLADKVVVLNSGRIEQVGSPL 219
Query: 238 EVLENPAHPYTQLLLNSLPRMG 259
E+ PA+ + L + P+MG
Sbjct: 220 ELYHQPANLFVAGFLGT-PKMG 240
>pir||E75108 daunorubicin resistance ATP-binding protein (drra-1) PAB1923 -
Pyrococcus abyssi (strain Orsay)
>gi|5458093|emb|CAB49582.1| (AJ248285) daunorubicin
resistance ATP-binding protein (drrA-1) [Pyrococcus
abyssi]
Length = 328
Score = 88.5 bits (216), Expect = 9e-17
Identities = 79/258 (30%), Positives = 124/258 (47%), Gaps = 25/258 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL-ILRKPP 59
M ++V NL Y G AV G+SF+V +GE+F G +G GK+T VH L L KP
Sbjct: 1 MYAIEVENLVKKY----GDFTAVKGISFKVKKGEIFAFLGPNGAGKTTTVHVLTTLLKP- 55
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G AI G D++ P++ +KI I+ Q +P+ + ++ HG
Sbjct: 56 ---TSGKAIVAGHDVVKEPQEVRKKI-----GIVFQ------DPSLDRELTAYENMYIHG 101
Query: 120 Y---ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
RE++E + E L V+L R D SGGM++R + + + P++L DE
Sbjct: 102 MIYGLKGRELKEKIEELLKFVELW-RFKDRPVKYFSGGMQRRLEIARALIHEPEILFLDE 160
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T LD T+ + E + M+E +I TH + Q+ADR+ ++ GK++ G
Sbjct: 161 PTIGLDPQTRAHIWEYI-RTMKEEHEMTIFLTTHYMDEAEQLADRIAIIDHGKIIAEGTS 219
Query: 237 EEVLENPAHPYTQLLLNS 254
EE+ + + L L S
Sbjct: 220 EELKKLVGNDIIYLKLES 237
>pir||C71197 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3258287|dbj|BAA30970.1| (AP000007) 318aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 318
Score = 88.2 bits (215), Expect = 1e-16
Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 1 MALLDVRNLRVYY--RTP-----VGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL 53
M +++VRNLR Y + P V + A+ G++F V +GE+FG+ G +G GK+T + L
Sbjct: 1 MNVIEVRNLRKLYPKKIPLPFRKVEWFEALKGITFRVKKGELFGLLGPNGAGKTTTIKIL 60
Query: 54 ILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQ-YSELSIIPQYAMNALNPTKRIKDIVW 112
+E G A G D++ R+ ++I +E + + A + I
Sbjct: 61 TTL---LEPSSGEAKVLGLDVVKDAREIRKRINLVAEGERTLYWRLTAYENLRYFASIY- 116
Query: 113 DLAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
Y RRE E+ + E L MV L R D+ + S GM+QR + + + +P++L
Sbjct: 117 -------YIPRREAEKRIEELLKMVGLWDRRNDLV-MNYSRGMKQRLAIAKALINDPEVL 168
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
DE T LDV + V EL+ + E K+++ TH + ++ DR+ ++ GK++
Sbjct: 169 FLDEPTLGLDVQSAVFVRELVRRLVDEE-GKTVLLTTHYMNEAEELCDRIAIIDHGKIIA 227
Query: 233 IGPME 237
+ E
Sbjct: 228 LNTPE 232
>gb|AAC69845.1| (AF076684) oligopeptide transporter putative ATPase domain
[Staphylococcus aureus]
Length = 258
Score = 88.2 bits (215), Expect = 1e-16
Identities = 66/254 (25%), Positives = 124/254 (47%), Gaps = 11/254 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKP-P 59
M+L+D++NL + + ++ +D ++ ++ + GESG GKS + +L+ P
Sbjct: 2 MSLIDIQNLTIKNTSEKSLIKGID---LKIFSQQINALIGESGAGKSLIAKALLEYLPFD 58
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
+ S F G ++ L + I Y I YA + + TK K + + R+H
Sbjct: 59 LSCTYDSYQFDGENVSRLSQYYGHTIGY----ISQNYAESFNDHTKLGKQLT-AIYRKHY 113
Query: 120 YADRREVEELLRERLSMVKLSPR-VADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ E + + LS V L + + + Y +LSGG +R + +L P L+IADE
Sbjct: 114 KGSKEEALSKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPV 173
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
++LD V++LL H + E +++ +TH+L+ + + + V+ G+++E G +
Sbjct: 174 ASLDALNGNQVMDLLQHIVLEH-GQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINH 232
Query: 239 VLENPAHPYTQLLL 252
HPYT+ L+
Sbjct: 233 FKYEHLHPYTERLI 246
>gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 138
Score = 87.8 bits (214), Expect = 2e-16
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 187 RVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHP 246
R+ I L +++ + S+I++THDLA ++DR+ +M+ G +VE+G +E VL +P HP
Sbjct: 7 RMSIVNLFAQLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGDIVEMGSVERVLTDPKHP 66
Query: 247 YTQLLLNSLPRMGVH--YKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKL 304
YT+LL S+P +K E Y L KGC+F RCP M CR+ +P
Sbjct: 67 YTRLLRESIPEPDPEKKWKEEITIADTEYEEYL---RKGCKFAGRCPEVMSICREEKPPE 123
Query: 305 VKVGRDHYAACHL 317
+ VG D CHL
Sbjct: 124 IMVG-DSMVRCHL 135
>pir||C83353 probable ATP-binding component of ABC maltose/mannitol transporter
PA2341 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9948377|gb|AAG05729.1|AE004660_5 (AE004660)
probable ATP-binding component of ABC maltose/mannitol
transporter [Pseudomonas aeruginosa]
Length = 370
Score = 87.8 bits (214), Expect = 2e-16
Identities = 75/260 (28%), Positives = 126/260 (47%), Gaps = 21/260 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L +RNL+ + + G+ +V + E G SGCGKSTL+ + +
Sbjct: 1 MADLKIRNLQKGFDGQA----IIKGIDLDVRDREFVVFVGPSGCGKSTLLRLIAGLE--- 53
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQ-YAMNALNPTKRIKDIVWDLAREHG 119
E GGS G D+ P + +L+++ Q YA+ +R DLA
Sbjct: 54 EASGGSIALDGTDITDTPPAK------RDLAMVFQTYALYPHMTVRRNLSFALDLAG--- 104
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
D+REV + +++L + + P +LSGG RQR + + + NP + + DE S
Sbjct: 105 -VDKREVAAKVDAAARILELQA-LLERKPRQLSGGQRQRVAIGRAIVRNPKIFLFDEPLS 162
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD RV + L + + + ++I+VTHD +AD+V+V+ G+V ++G E+
Sbjct: 163 NLDAAL-RVQMRLELARLHQELAATMIYVTHDQVEAMTLADKVVVLNGGRVEQVGSPLEL 221
Query: 240 LENPAHPYTQLLLNSLPRMG 259
+PA+ + L + P+MG
Sbjct: 222 YHHPANLFVAGFLGT-PKMG 240
>gb|AAD22041.1| (AF118229) ATP-binding cassette protein PstB [Streptococcus
pneumoniae]
Length = 250
Score = 87.4 bits (213), Expect = 2e-16
Identities = 68/255 (26%), Positives = 118/255 (45%), Gaps = 19/255 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKP-- 58
M VR+L ++Y G +A+ +S ++ E ++ + G SGCGKST + +L
Sbjct: 1 MGTFSVRHLDLFY----GDFQALKNISIQLPERQITALIGPSGCGKSTFLKTLNRMNDLV 56
Query: 59 PMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNP-TKRIKDIVWDLARE 117
P + G + +D+ S K ++L NP I D V R
Sbjct: 57 PSCHIEGQVLLDEQDIYS------SKFNLNQLRKRVGMVFQQPNPFAMSIYDNVAYGPRT 110
Query: 118 HGYADRREVEELLRERLSMVKLSPRVAD---MYPVELSGGMRQRATMVVSTLLNPDLLIA 174
HG D+++++ L+ + L + V D + LSGG +QR + + + PD+L+
Sbjct: 111 HGIRDKKQLDALVEKSLKGAAIWEEVKDDLKKSAMSLSGGQQQRLCIARALAVEPDILLM 170
Query: 175 DEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
DE TSALD + + +L+ ++ +II VTH++ +I+D+ G++ E G
Sbjct: 171 DEPTSALDPISTLKIEDLIQQLKKD---YTIIIVTHNMQQASRISDKTAFFLTGEICEFG 227
Query: 235 PMEEVLENPAHPYTQ 249
+V NP T+
Sbjct: 228 DTVDVFTNPKDQRTE 242
>sp|Q50734|YP64_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV2564
>gi|7445795|pir||H70728 probable atp-binding transport
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1460076|emb|CAB01051.1| (Z77250) glnQ [Mycobacterium
tuberculosis]
Length = 330
Score = 87.0 bits (212), Expect = 3e-16
Identities = 77/243 (31%), Positives = 121/243 (49%), Gaps = 18/243 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKP 58
M L + +L V Y + VR +DG+S +V G + + G SGCGK+TL+ L ILR
Sbjct: 1 MGGLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRP- 59
Query: 59 PMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL--AR 116
K GS F D+ +L L K + ++ I+ Q A N ++ +++++ L A
Sbjct: 60 ----KSGSIKFDDVDITTLEGAALAKYRRDKVGIVFQ-AFNLVSSLTALENVMVPLRAAG 114
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
A R+ E+L L V L R+ P ++SGG +QR + + L+P L++ADE
Sbjct: 115 VSRAAARKRAEDL----LIRVNLGERMKHR-PGDMSGGQQQRVAVARAIALDPQLILADE 169
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T+ LD V+ L+ Q V ++ THD +L +ADRV+ + +V P
Sbjct: 170 PTAHLDFIQVEEVLRLIRSLAQGDRV--VVVATHDSRML-PLADRVLELMPAQVSPNQPP 226
Query: 237 EEV 239
E V
Sbjct: 227 ETV 229
>pir||H72342 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981229|gb|AAD35787.1|AE001742_2 (AE001742)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 228
Score = 87.0 bits (212), Expect = 3e-16
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
AL++V NL Y V A+ G++ + GE + G SG GK+TL++ L P
Sbjct: 3 ALIEVHNLWKEYNGKEK-VTALKGINLRINTGEFVVILGPSGSGKTTLLNCLSGVDRPTR 61
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G+ I G DL +L +E + + + + Q+ N + I+++ L
Sbjct: 62 ---GTVIIHGTDLYTLSEEERTRFRAENMGFVFQF-FNLVPVLTAIENVELPLLILG--V 115
Query: 122 DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSAL 181
+R+E E E L V L+ + D +P ELSGG +QR + + + NP ++ ADE T AL
Sbjct: 116 NRKEARERAFEILRKVGLAHK-CDRFPEELSGGEKQRVAIARAIVHNPKVIWADEPTGAL 174
Query: 182 DVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
D T R++I+LL + +++ VTHD + + ADRV+ + G++
Sbjct: 175 DNETGRMIIDLLMEMKEN---STLVVVTHDERIAEK-ADRVIRIRDGQI 219
>pir||C69223 anion permease - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622017|gb|AAB85418.1| (AE000867) anion
permease [Methanobacterium thermoautotrophicum]
Length = 357
Score = 86.6 bits (211), Expect = 4e-16
Identities = 70/250 (28%), Positives = 128/250 (51%), Gaps = 26/250 (10%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M+ LD+ NL + +V VD + G+ + G +G GKS + +++ P+
Sbjct: 1 MSFLDIDNLEIDLGE---FVVRVD--ELHLSRGDYLVIIGPTGSGKSIFLETIMGFFEPI 55
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G+ G DL +LP +E ++SI+ Y + L P +++ + +G
Sbjct: 56 S---GTISLDGADLTTLPPEE------RDVSIV--YQDHCLFPHMTVEENI-----AYGL 99
Query: 121 ADRREVEELLRERLSMVKLS---PRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+ E++E + ++ + V + YP LSGG QRA++ + ++NP LL+ DE
Sbjct: 100 RKQTEMKENIHRQVHEIAAMMGIDHVLNRYPGTLSGGELQRASIARAIIVNPRLLLMDEP 159
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
SALD T ++ + L +++ ++I VTHDL + ++++V VM GK++++G E
Sbjct: 160 FSALDQRT-KISLRKLIADIRDNFETTVIHVTHDLDDIWWLSNKVAVMNHGKIIQMGKKE 218
Query: 238 EVLENPAHPY 247
EV+ P+ PY
Sbjct: 219 EVINKPS-PY 227
>dbj|BAB03338.1| (AB035453) ABC transporter [Staphylococcus aureus]
Length = 253
Score = 86.2 bits (210), Expect = 5e-16
Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 23/237 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA+L+V+ L Y T + ++ + EGE + G SG GK+TL++ L +
Sbjct: 1 MAILEVKQLTKIYGTKKMAQEVLRDINMSIEEGEFIAIMGSSGSGKTTLLNVL----SSI 56
Query: 61 EY-KGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKD------IVWD 113
+Y GS KG+ L L EL I+ ++ I Q N L+ T +K+ V
Sbjct: 57 DYISQGSITLKGKKLEKLSNKELSDIRKHDIGFIFQ-EYNLLH-TLTVKENIMLPLTVQK 114
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
L +EH E + E L+++ +S D YP ELSGG RQR + + + P ++
Sbjct: 115 LDKEH----MLNRYEKVAEALNILDIS----DKYPSELSGGQRQRTSAARAFITLPSIIF 166
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
ADE T ALD + + +++ L M E +II VTHD + A+RV+++ G++
Sbjct: 167 ADEPTGALDSKSTQDLLKRLTR-MNEAFKSTIIMVTHD-PVAASYANRVVMLKDGQI 221
>pir||T45265 cobalt transport ATP-binding protein O homolog [imported] -
Methanobacterium thermoautotrophicum
>gi|1419078|emb|CAA63958.1| (X94292) cbiO
[Methanobacterium thermoautotrophicum]
Length = 277
Score = 85.8 bits (209), Expect = 6e-16
Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTL-VHSLILRKPP 59
M +++ N+R Y P G A+ G+ F +GEV + G +G GKSTL +H + +P
Sbjct: 1 MKIIEAVNIRYTY--PDG-TEALKGIDFHAKKGEVVALLGPNGAGKSTLFLHFNGILQPT 57
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G + G+++ + L K++ ++ I+ Q + L + +D+ +
Sbjct: 58 ----SGKVLVDGKEI-DYSKSGLIKVR-QKVGIVFQNPDDQLFAPRVDEDVAFGPLNMG- 110
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
D EVEE +++ L V +S D P LSGG ++R + + PD++I DE TS
Sbjct: 111 -LDEDEVEERVKDALRKVGMSGTRTD--PHHLSGGEKKRVAIAGILAMKPDIMILDEPTS 167
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD ++ LLH +EG+ +II THD+ L +DR+ ++ G+++ G +V
Sbjct: 168 GLDPRGASQILRLLHELNEEGM--TIIISTHDVDLAPLYSDRIYIISGGEIISEGTPGDV 225
Query: 240 LEN 242
+
Sbjct: 226 FSD 228
>pir||T47012 hypothetical protein [imported] - Yersinia pestis
>gi|4106600|emb|CAA21355.1| (AL031866) ORF32, len:, 236
aa, hypothetical ABC transporter, similar to many, eg:
E. coli YBBA_ECOLI (228 aa), 44.0% identity in 225 aa
overlap, Fasta scores: opt: 611, E(): 0 [Yersinia
pestis]
Length = 237
Score = 85.8 bits (209), Expect = 6e-16
Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
A+++ R+L Y R G V A++ ++ + GE + G SG GK+TL++ L E
Sbjct: 16 AVIETRHL--YKR--FGQVTALEDINIRINRGEFVAIMGASGSGKTTLMNILTCLDTVSE 71
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G + G D L + R+ + ++ ++ + L P + + H
Sbjct: 72 ---GQVLLDGIDAAGLDEEGRRQFRADKIGLV--FQQFHLIPYLTALENIMLAQHYHSVV 126
Query: 122 DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSAL 181
D EE R+ L V ++PR+ + P +LSGG +QR + + + P ++ ADE T L
Sbjct: 127 D----EEAARQVLEQVGMTPRMGHL-PSQLSGGEQQRVCIARALVNQPPIIFADEPTGNL 181
Query: 182 DVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
D ++ V+ELL+H ++G ++I+ VTH+ L +ADRV+ + GK ++
Sbjct: 182 DEENEQRVLELLNHIHRQG--RTIVMVTHN-PDLSCVADRVIRLQHGKYLD 229
>pir||C82526 ABC transporter ATP-binding protein XF2695 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107936|gb|AAF85492.1|AE004075_7 (AE004075) ABC
transporter ATP-binding protein [Xylella fastidiosa]
Length = 228
Score = 85.8 bits (209), Expect = 6e-16
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M++L N+ Y P G++ A+D VSF V EGE+ V G SG GKSTL+ + L + P
Sbjct: 1 MSVLSFDNVSKQY--PDGHL-ALDDVSFSVAEGEMLFVTGHSGAGKSTLLKLIQLDERPT 57
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G +F +L+++ R+I + + Y + L + D V L
Sbjct: 58 Y---GEVLFDDLNLLNV---RGRQIPFHRRQVGAVYQEHRLLMDYSVGDNV-ALPLVLRG 110
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
R E+ + + L V L+ R + P ELS G +QR + + + P LL+ADE T
Sbjct: 111 IPRAEIGKQVCSVLERVSLAHR-SRALPSELSAGEQQRVGIARAIISEPRLLVADEPTGN 169
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV-EIGPME 237
LD T +++L G S++ V+HDLALL+++ RV+++ G++V +I P +
Sbjct: 170 LDPTLAEEIMQLFVELPARG--TSVLVVSHDLALLKKMRKRVLILDHGRLVDDISPQD 225
>pir||S75960 nitrate transport protein D-1 - Synechocystis sp. (strain PCC 6803)
>gi|1001320|dbj|BAA10807.1| (D64006) nitrate transport
protein NrtD [Synechocystis sp.]
Length = 282
Score = 85.4 bits (208), Expect = 8e-16
Identities = 67/233 (28%), Positives = 111/233 (46%), Gaps = 15/233 (6%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
A L + N+ Y T G ++ V+ V EGE V G SGCGKSTL++ + P +
Sbjct: 22 AFLTIENVSKVYPTAKGPYTVLENVNLTVNEGEFICVIGHSGCGKSTLLNMVSGFASPTD 81
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
GS G+ + D R + + +++P + AL D V H
Sbjct: 82 ---GSVQVGGKIITEPGPD--RMVVFQNYALLPW--LTALENVYIAVDAV------HSQK 128
Query: 122 DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSAL 181
E + ++ L+MV L+ + D P ++SGGM+QR ++ + + P++LI DE AL
Sbjct: 129 TEAEKRAIAKDHLAMVGLTDSM-DKKPGQISGGMKQRVSIARALAIRPEVLILDEPFGAL 187
Query: 182 DVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
D T+ + E L + +++ +THD+ +ADR+++M G IG
Sbjct: 188 DAITKEELQEELLQIWNDHRC-TVLMITHDIDEALFLADRLVMMTNGPHANIG 239
>gb|AAF99694.1|AF267498_4 (AF267498) ABC transporter OrfX [Streptococcus mutans]
Length = 246
Score = 85.0 bits (207), Expect = 1e-15
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVR-AVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
M + V +L+ Y+T G A+ ++F V EGE + GESG GKSTL++ L P
Sbjct: 1 MTYIGVSHLKKVYKTQEGLTNEALKDITFSVQEGEFIAIMGESGSGKSTLLNILACMDYP 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G IF L + +E + + I Q N LN +++ +
Sbjct: 61 ---SSGHIIFNNYQLEKVKDEEAAVFRSRHIGFIFQN-FNLLNIFNNKDNLLIPVIISGS 116
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ E+ LR+ ++V + ++ YP ELSGG +QR + + ++NPDL++ADE T
Sbjct: 117 KVN--SYEKRLRDLAAVVGIESLLSK-YPYELSGGQQQRLAIARALIMNPDLILADEPTG 173
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
LD T + ++ LL + + K+I+ VTH A+RV+ + G +
Sbjct: 174 QLDSKTSQRILNLLSNINAKR--KTILMVTHS-PKAASYANRVLFIKDGVI 221
>pir||C72336 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981293|gb|AAD35847.1|AE001746_8 (AE001746)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 265
Score = 84.7 bits (206), Expect = 1e-15
Identities = 73/242 (30%), Positives = 121/242 (49%), Gaps = 41/242 (16%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M +L V++L+ +Y G AVDG+SFEV +GE+F + G +G GK+T + + LRK
Sbjct: 1 MMILRVKDLKKFY----GEKAAVDGISFEVEKGEIFAILGPNGAGKTTTLKCITGLRK-- 54
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
K I LP ++ L P R+K+I+ DL ++ G
Sbjct: 55 ---KDSGEIELNGTFTYLPEEK------------------KLYPYLRVKEII-DLFKKIG 92
Query: 120 --YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+ ++ +E L R R + L+ +V + LS GMR + + N DL I DE
Sbjct: 93 KNFNEKNCLELLERFR---IDLNEKVTN-----LSHGMRTILYLSLVLSENVDLYILDEP 144
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T LD + +++ + EG KS+++ +H LA + +IADRV +M GK++ G ++
Sbjct: 145 TWGLDPIVRNEILDRIRSLTFEG--KSVLYTSHVLAEVEKIADRVAIMKEGKIILTGNLD 202
Query: 238 EV 239
++
Sbjct: 203 DI 204
>pir||H75151 abc transporter, ATP-binding protein PAB0249 - Pyrococcus abyssi
(strain Orsay) >gi|5457805|emb|CAB49295.1| (AJ248284)
ABC transporter, ATP-binding protein [Pyrococcus abyssi]
Length = 280
Score = 84.7 bits (206), Expect = 1e-15
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTL---VHSLILRK 57
M +++V N+ Y Y ++ V+ V +GE G+ G SG GKST ++ LI
Sbjct: 1 MNIIEVENVSFKYGNSKAY--SLRDVNLNVKKGEFLGIIGPSGSGKSTFCLTLNGLIPHS 58
Query: 58 PPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVW----D 113
E++G + D L ++S + + + NP ++ ++
Sbjct: 59 INGEFEGNVFV-----------DGLNTREHSVAELSTRVGLVFQNPDSQLFNMTVLEEVA 107
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
A E+ +R E+ +R L +VKL + + +P LSGG +QR + ++ P +L+
Sbjct: 108 FALENLGVEREEMWRRIRWALKLVKLWDK-REEFPPNLSGGEKQRLAIASVLVMKPKVLV 166
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE TS LD + V+ L+ +E + +II V H+ L + ADR++V G+VV
Sbjct: 167 LDEPTSQLDPLGREEVLSLVRLLNKEEKI-TIILVEHNTDFLLEHADRIVVFDGGRVVME 225
Query: 234 GPMEEVLEN 242
G EEV EN
Sbjct: 226 GKPEEVFEN 234
>gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Mycoplasma bovis]
Length = 156
Score = 84.7 bits (206), Expect = 1e-15
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 189 VIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVLENPAHPYT 248
V+ L QE + SII ++H+++++ + + + VMYAGK+VE G +++ NPAHPYT
Sbjct: 3 VLALFEQIRQEYNI-SIILISHNISVVAKFCEYIYVMYAGKIVERGTRKDIFTNPAHPYT 61
Query: 249 QLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDVEPKLVKVG 308
L++++P ERL I G P + N P G F R FA+E + EP L+++
Sbjct: 62 WALISAIP----ENDDERLFSIQGTPPDMANLPIGDPFAPRNDFALEIDYEKEPPLIEIN 117
Query: 309 RDHYAACHLL 318
H AA LL
Sbjct: 118 SHHKAATWLL 127
>pir||A82974 probable ATP-binding component of ABC transporter PA5376 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9951699|gb|AAG08761.1|AE004950_4 (AE004950) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 392
Score = 84.7 bits (206), Expect = 1e-15
Identities = 74/256 (28%), Positives = 130/256 (49%), Gaps = 18/256 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL-----IL 55
+ LLD R G V V+ +V GE+ + G SG GKS+L+ + +
Sbjct: 21 LKLLDQGLGRAEILKRTGQVLGVEDACLDVNRGEICVLMGLSGSGKSSLLRCINGLNKVS 80
Query: 56 R-KPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL 114
R K +E++G D+ + L+ ++ ++++ + AL P + + V
Sbjct: 81 RGKLLIEHEGSQV-----DIANCSPATLKAMRTKRIAMV--FQKFALMPWLTVAENV-GF 132
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
E E ++L+ E+L +V LS + D P LSGGM+QR + + ++ D+L+
Sbjct: 133 GLEMQGRPAAERKKLIDEKLELVGLS-QWRDKRPDSLSGGMQQRVGLARALAMDGDILLM 191
Query: 175 DEITSALD-VTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE SALD + Q++ ELL +Q + K+I+FV+HDL +I R+ +M G++++
Sbjct: 192 DEPFSALDPLIRQQLQDELL--VLQRQLHKTIVFVSHDLDEALKIGTRIAIMKDGRIIQH 249
Query: 234 GPMEEVLENPAHPYTQ 249
G EE++ +PA Y +
Sbjct: 250 GKPEEIVLSPADDYVR 265
>gi|11499941 ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]
>gi|7445691|pir||D69545 ABC transporter, ATP-binding
protein homolog - Archaeoglobus fulgidus
>gi|2650733|gb|AAB91301.1| (AE001113) ABC transporter,
ATP-binding protein [Archaeoglobus fulgidus]
Length = 254
Score = 84.3 bits (205), Expect = 2e-15
Identities = 83/269 (30%), Positives = 132/269 (48%), Gaps = 30/269 (11%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M +L V NL V VG + + V+ + EGE F + G +G GKSTL+++LI P
Sbjct: 1 MGVLRVVNLGV----KVGEKKILKNVNLFIKEGETFVLFGPNGSGKSTLLNALI-GNPSY 55
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTK----RIKDIVWDLAR 116
+ G +FK D+ +LP +E K+ + I Q NP K ++ D++ AR
Sbjct: 56 KVTSGRILFKKVDITNLPTNERVKL---GIGIAFQ------NPPKISGVKLIDVLRYCAR 106
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
GY + + +E L E++ M R +M SGG +R+ ++ L+NPDL++ DE
Sbjct: 107 VGGYGEDKILE--LAEKMRMTDHLYREINM---GFSGGEVKRSELLQLMLMNPDLVLLDE 161
Query: 177 ITSALDVTTQRVVIE----LLHHFMQEG-IVKSIIFVTHDLALLRQI-ADRVMVMYAGKV 230
S +D+ ++ E LL +EG KS I +TH +L + AD ++Y G++
Sbjct: 162 PDSGVDLENVALIGEAIRTLLERDKEEGERTKSGIIITHQGHILDYVDADYAAILYNGRI 221
Query: 231 VEIGPMEEVLEN-PAHPYTQLLLNSLPRM 258
IG +++L H Y L L M
Sbjct: 222 ACIGEPKDILNQIRNHGYEGCLAKCLANM 250
>pir||C72303 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4981569|gb|AAD36105.1|AE001764_8 (AE001764)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 293
Score = 84.3 bits (205), Expect = 2e-15
Identities = 62/243 (25%), Positives = 118/243 (48%), Gaps = 31/243 (12%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M++++VR+L YY G R V+GV+F V EGE+FG G +G GK+T + L+ P
Sbjct: 1 MSVVEVRDLTKYY----GKSRGVEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFP- 55
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQY--SELSIIPQYAMNAL--NPTKRIKDIVWDLAR 116
G A G+D++ ++ + + Y E+S P+ + + + WD +
Sbjct: 56 --DSGLAEIFGKDVLKEGKEIRKNVGYIPGEVSFYPEVTVEEFLRYSASFYEKVDWDYVK 113
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
E + ++ ++ ELS G +++ +V + + P LLI DE
Sbjct: 114 ELCGVFSLDTKKRIK------------------ELSMGNKKKVAIVQALMHRPKLLILDE 155
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
T+ LD Q E+L + ++G ++ F +H L+ + ++ DRV ++ G+++ + +
Sbjct: 156 PTNGLDPIVQNTFFEILKNEKEKG--TTVFFSSHILSEVERLCDRVAMIKDGRIIRVEKV 213
Query: 237 EEV 239
E +
Sbjct: 214 ENL 216
>gb|AAG18646.1| (AE004970) amino acid ABC transporter, ATP-binding protein; YvrO
[Halobacterium sp. NRC-1]
Length = 221
Score = 84.3 bits (205), Expect = 2e-15
Identities = 66/231 (28%), Positives = 112/231 (47%), Gaps = 17/231 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M+++++ + Y T V A+ GV F GE+ V G SG GKST+++ + L P
Sbjct: 1 MSIIELEGVVKRYETGAETVEALKGVDFSAARGEMVTVVGPSGSGKSTMLNMIGLLDSP- 59
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQ--YAMNALNPTKRIK-DIVWDLARE 117
GS G+D+ DE + + +EL + Q + + L + ++ +WD +
Sbjct: 60 --TAGSVTLDGQDVTGFSEDERTEERRAELGFVFQSFHLLPMLTAVENVELPSMWDTS-- 115
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
DR + L ER V L R+ P ELSGG +QR + S + P++L+ADE
Sbjct: 116 ---VDRHDRAVDLLER---VGLGDRLTHT-PGELSGGQQQRVAIARSLINEPEILLADEP 168
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAG 228
T LD T ++ + +E + +++ +THD L + +DR + + G
Sbjct: 169 TGNLDQETGGTILTEMQRLTEEENI-AVVAITHD-TQLEEFSDRAVNLVDG 217
>gb|AAK43169.1| Arabinose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 371
Score = 83.5 bits (203), Expect = 3e-15
Identities = 70/245 (28%), Positives = 118/245 (47%), Gaps = 11/245 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M + V NL ++ V+AVD VS + G FGV G SG GK+T + + L +P
Sbjct: 1 MTTIRVENLSKIFKKGKTEVKAVDNVSITIDSGMAFGVLGPSGHGKTTFLRLIAGLEEPT 60
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
Y I+ + +S PR + + ++++ + AL P + D + +
Sbjct: 61 SGY-----IYFDNEAVSSPRRVMMSPEKRGIAMV--FQNWALYPNMTVFDNI-AFPLKLA 112
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ ++E ++E + LS V + YP ELSGG QR + + + +P +L+ DE S
Sbjct: 113 KVPKDKIENKVKEVSEELGLS-GVLNRYPKELSGGQMQRTAIARALVKDPKVLLLDEPFS 171
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD + L+ +E + ++I V+HD A + IA++ V+ GK +IG E+
Sbjct: 172 NLDAQIRESARALVRKIQRERKLTTLI-VSHDPADIFAIANKAGVIVNGKFAQIGTPTEI 230
Query: 240 LENPA 244
E PA
Sbjct: 231 YEYPA 235
>pir||G69192 ABC transporter (glutamine transport ATP-binding protein) -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621782|gb|AAB85201.1| (AE000849) ABC transporter
(glutamine transport ATP-binding protein)
[Methanobacterium thermoautotrophicum]
Length = 220
Score = 83.5 bits (203), Expect = 3e-15
Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 17/235 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M ++VR+LR + + G +RA++GV+ EV GE + G SG GKSTL++ + P
Sbjct: 1 MKAIEVRDLRKSFDS--GRIRALNGVNLEVDGGEFISIMGPSGSGKSTLLNMIGALDVP- 57
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G+ GRDL S RD L +++ E+ + Q N T + A +H
Sbjct: 58 --DSGTICVAGRDL-SRERD-LSRLRAEEIGFVFQLHNLIPNLTALENVEIPMFAVKH-- 111
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+EE E L V L+ + A P ELSGG RQR + + +P +++ADE T +
Sbjct: 112 ---ENMEERAMELLEYVDLADK-AHRKPTELSGGERQRVAIARALANDPSIILADEPTGS 167
Query: 181 LDV-TTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIG 234
LD T+QRV+ +L EG+ +++ VTH+ + +A R + + G +V+ G
Sbjct: 168 LDSRTSQRVLRKLRELQEDEGV--TLVVVTHE-PDVAAMASRTIRILDGVIVDDG 219
>pir||B70849 hypothetical protein Rv0073 - Mycobacterium tuberculosis (strain
H37RV) >gi|2808730|emb|CAA16254.1| (AL021428)
hypothetical protein Rv0073 [Mycobacterium tuberculosis]
Length = 330
Score = 83.5 bits (203), Expect = 3e-15
Identities = 72/227 (31%), Positives = 121/227 (52%), Gaps = 18/227 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKP 58
M L ++NL V Y + +R ++G++ +V G + + G SGCGK+TL+ L ILR
Sbjct: 1 MGDLSIQNLVVEYYSGGYALRPINGLNLDVAAGSLVMLLGPSGCGKTTLLSCLGGILRP- 59
Query: 59 PMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDL--AR 116
K G+ F D+ +L EL + +++ I+ Q A N + +++++ L A
Sbjct: 60 ----KSGAIKFDEVDITTLQGAELANYRRNKVGIVFQ-AFNLVPSLTAVENVMVPLRSAG 114
Query: 117 EHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
A RR EEL L+ V L+ R+ + P +LSGG +QR + + L+P L++ADE
Sbjct: 115 MSRRASRRRAEEL----LARVNLAERM-NHRPGDLSGGQQQRVAVARAIALDPPLILADE 169
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVM 223
T+ LD V+ L+ + +G + ++ THD +L +ADRV+
Sbjct: 170 PTAHLDFIQVEEVLRLIRE-LADG-ERVVVVATHDSRML-PMADRVV 213
>pir||H71008 probable ATP-binding transport protein - Pyrococcus horikoshii
>gi|3257789|dbj|BAA30472.1| (AP000006) 308aa long
hypothetical ATP-binding transport protein [Pyrococcus
horikoshii]
Length = 308
Score = 83.5 bits (203), Expect = 3e-15
Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 20/240 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M ++V L Y G +A+D +SF V EG VFG G +G GK+T + S++ P
Sbjct: 1 MYAIEVEKLTKSY----GKFKAIDNLSFVVDEGIVFGFLGPNGAGKTTTILSMLGIIIP- 55
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTK-RIKDIVWDLAREHG 119
G G D+ P + L +P+ A T R D R
Sbjct: 56 --DSGDVRILGYDIFKEPLKAKER-----LGFLPENATIYEELTAWRNLDFFASFYRMSK 108
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ +EELL+ + + + R A + S GMRQR + + + +P+LLI DE TS
Sbjct: 109 QEKEKRIEELLK-LVGLWDVRYRKAKTF----SKGMRQRLLLAQALINDPELLILDEPTS 163
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD R+V +++ ++G K++ F +H L+ + ++AD+V ++ GK+ +G +EE+
Sbjct: 164 GLDPEGARLVKDIIREQRKQG--KTVFFSSHILSEVEELADKVGIIVKGKLRTVGTLEEI 221
>pir||E75122 hypothetical protein PAB1845 - Pyrococcus abyssi (strain Orsay)
>gi|5458205|emb|CAB49694.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 305
Score = 83.1 bits (202), Expect = 4e-15
Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 24/242 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M ++++ NL Y G +AVD +S EV +G +FG G +G GK+T + S++ P
Sbjct: 1 MKVIEIENLTKSY----GKFKAVDNLSLEVEKGIIFGFLGPNGAGKTTTILSMLGIIIP- 55
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVW---DLARE 117
GS G D+ P + L +P+ N T + W D
Sbjct: 56 --DSGSVRLLGYDIFKEPIKAKER-----LGFLPE------NATIYEELTAWRNLDFFAS 102
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
++E E+ + E L +V L V S GM+QR + + + +P+LLI DE
Sbjct: 103 FYNIPKQEKEKRIEELLKLVGLWD-VRYRKVKSFSKGMKQRLLLAQALINDPELLILDEP 161
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
TS LD R+V +++ ++G K++ F +H L+ + ++AD+V ++ GK+ +G +E
Sbjct: 162 TSGLDPQGARLVKDIILEQKKQG--KTVFFSSHILSEVEELADKVGIIVKGKLRTVGTLE 219
Query: 238 EV 239
E+
Sbjct: 220 EI 221
>sp|P55604|Y4OS_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN Y4OS
>gi|2182563|gb|AAB91805.1| (AE000089) Y4oS [Rhizobium
sp. NGR234]
Length = 371
Score = 82.7 bits (201), Expect = 5e-15
Identities = 69/257 (26%), Positives = 126/257 (48%), Gaps = 24/257 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M + +RN+ Y G + + +SF + +GE + G SGCGKSTL+ L +
Sbjct: 17 MTDVTIRNVTKRY----GALTVIPQLSFRIEDGEFVVLVGPSGCGKSTLLRMLA----GL 68
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
E G + G D+++ R + +++I+ + AL P + + + A +
Sbjct: 69 EEISGGDLLMGADVIND-----RPAKERDMAIV--FQNYALYPHMTVAENM-GFALKLRK 120
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
R E++E + + +++ L ++ D YP LSGG RQR M + + +P + + DE S
Sbjct: 121 RPRAEIDERVDKAAAILGLG-KLLDRYPRALSGGQRQRVAMGRAIVRDPQVFLFDEPLSN 179
Query: 181 LDV---TTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
LD R I+ LH + + + ++VTHD +AD+++VM G+V ++G
Sbjct: 180 LDAKLRVQMRAEIKALH----QRLKITTVYVTHDQIEAMTMADKIVVMNEGRVEQMGTPL 235
Query: 238 EVLENPAHPYTQLLLNS 254
E+ + PA+ + + S
Sbjct: 236 ELYDRPANIFVAGFIGS 252
>pir||H75157 daunorubicin resistance ATP-binding protein (drra-2) PAB2068 -
Pyrococcus abyssi (strain Orsay)
>gi|5457853|emb|CAB49343.1| (AJ248284) daunorubicin
resistance ATP-binding protein (drrA-2) [Pyrococcus
abyssi]
Length = 318
Score = 82.3 bits (200), Expect = 7e-15
Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 21/245 (8%)
Query: 1 MALLDVRNLRVYY--RTP-----VGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL 53
M ++V+NLR Y + P + + A+ G++F V +GE+FG+ G +G GK+T + L
Sbjct: 1 MKAIEVKNLRKLYPKKIPLPFRKIEWFEALKGITFNVKKGELFGLLGPNGAGKTTTIKIL 60
Query: 54 ILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQ-YSELSIIPQYAMNALNPTKRIKDIVW 112
+E G A G D++ R+ ++I +E + + A + I
Sbjct: 61 TTL---LEPTSGEARVLGFDIVKEAREIRKRINLVAEGERTLYWRLTAYENLRYFASIY- 116
Query: 113 DLAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
Y ++ EE +R L MV L R D+ + S GM+QR + + + +P++L
Sbjct: 117 -------YVPKKVAEERIRNLLHMVGLWDRKDDLV-MNYSRGMKQRLAIAKALINDPEVL 168
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
DE T LDV + V EL+ ++E K+++ TH + ++ DR+ ++ G+++
Sbjct: 169 FLDEPTLGLDVQSAIFVRELIKKLVEEE-KKTVLLTTHYMHEAEELCDRIAIIDHGRIIA 227
Query: 233 IGPME 237
+ E
Sbjct: 228 LDTPE 232
>emb|CAC05880.1| (AL391754) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor]
Length = 229
Score = 82.3 bits (200), Expect = 7e-15
Identities = 75/231 (32%), Positives = 108/231 (46%), Gaps = 19/231 (8%)
Query: 2 ALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPME 61
+LL LR Y G A+DG F + GEV V G SG GKSTL+H L PP
Sbjct: 7 SLLSADQLRKAY----GPTLALDGAEFSIHPGEVVAVMGPSGSGKSTLLHCLAGIVPP-- 60
Query: 62 YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGYA 121
G+ + GR+L ++ + ++ S+ + Q+ L P + V R +G
Sbjct: 61 -DSGTITYNGRELSAMSDAQRSALRRSDFGFVFQFGQ--LVPELTCVENVALPLRLNG-T 116
Query: 122 DRREVEELL---RERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
R+E E ERL + L + P E+SGG QR + S + NP +L ADE T
Sbjct: 117 SRKEAERAALSWMERLEVDDLRKK----RPGEVSGGQGQRVAVARSLVTNPRVLFADEPT 172
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGK 229
ALD V+ELL +++ VTH+ A + +DR +V+ GK
Sbjct: 173 GALDSLNGERVMELLTD-AARSTNAAVVLVTHE-ARVAAYSDREIVVRDGK 221
>pir||G64435 cobalt transport ATP-binding protein O homolog - Methanococcus
jannaschii >gi|1591732|gb|AAB99089.1| (U67551) cobalt
transport ATP-binding protein (cbiO) [Methanococcus
jannaschii]
Length = 279
Score = 81.9 bits (199), Expect = 9e-15
Identities = 65/243 (26%), Positives = 126/243 (51%), Gaps = 15/243 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTL-VHSLILRKPP 59
M +++ ++L Y+R P G + G++F+V +GE+ + G +G GKSTL +H + +P
Sbjct: 1 MYIVETKDL--YFRYPDG-TAVLKGINFKVKKGEMVSLLGPNGAGKSTLFLHFNGILRPT 57
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G + KG+ + + L +++ + + PT + +D+ +
Sbjct: 58 K----GEVLIKGKPI-KYDKKSLVEVRKTVGLVFQNPDDQIFAPTVK-EDVAFGPLNLG- 110
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ EVE+ ++E L V + + P LSGG ++R + + P++++ DE T+
Sbjct: 111 -LPKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMQPEVIVLDEPTA 168
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD +++LL+ ++G+ +II THD+ L+ AD+V VMY GK+++ G +EV
Sbjct: 169 GLDPVGASKIMKLLYDLNKKGM--TIIISTHDVDLVPVYADKVYVMYDGKILKEGTPKEV 226
Query: 240 LEN 242
+
Sbjct: 227 FSD 229
>pir||T35994 probable ABC-type transport system ATP-binding chain - Streptomyces
coelicolor >gi|5459389|emb|CAB50747.1| (AL096839)
putative ABC transporter ATP-binding subunit
[Streptomyces coelicolor A3(2)]
Length = 254
Score = 81.9 bits (199), Expect = 9e-15
Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 19/245 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L++R+L V + GV V +GE + G +G GKSTL +SL P
Sbjct: 1 MATLEIRDLHVTVEADNATKEILKGVDLTVKQGETHAIMGPNGSGKSTLAYSLA-GHPKY 59
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
GG+ G D++ + DE + + L + QY + + V + R
Sbjct: 60 TITGGTVTLDGEDVLEMSVDERAR---AGLFLAMQYPVEVPGVS------VSNFLRTSAT 110
Query: 121 ADRREVEEL------LRERLSMVKLSPRVADMYPVE-LSGGMRQRATMVVSTLLNPDLLI 173
A R E +L ++E + + + P A+ E SGG ++R ++ LL P + I
Sbjct: 111 AVRGEAPKLRHWVKEVKEAMERLNMDPAFAERNVNEGFSGGEKKRHEILQLELLKPKVAI 170
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQI-ADRVMVMYAGKVVE 232
DE S LDV RVV E ++ + G V +++ +TH +LR I D V V G++ E
Sbjct: 171 LDETDSGLDVDALRVVSEGVNRVRETGEVGTLL-ITHYTRILRYIKPDYVHVFANGRIAE 229
Query: 233 IGPME 237
G E
Sbjct: 230 SGGAE 234
>pir||E83248 probable ATP-binding component of ABC transporter PA3187 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9949305|gb|AAG06575.1|AE004742_11 (AE004742)
probable ATP-binding component of ABC transporter
[Pseudomonas aeruginosa]
Length = 386
Score = 81.5 bits (198), Expect = 1e-14
Identities = 67/273 (24%), Positives = 123/273 (44%), Gaps = 24/273 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L++RNL Y + G + + ++ GE + G SGCGKSTL++ + +
Sbjct: 1 MATLELRNLHKSYGS--GLADTLRDIRLKIDSGEFLILVGPSGCGKSTLMNCIAGLE--- 55
Query: 61 EYKGGSAIFKGRDLMSL-PRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
GG+ + G+D+ + P+D I + AL PT +++ + G
Sbjct: 56 SITGGAILVDGQDISGMSPKDR---------DIAMVFQSYALYPTMSVRENI-----AFG 101
Query: 120 YADRREVEELLRERLSMVKLSPRVADMY---PVELSGGMRQRATMVVSTLLNPDLLIADE 176
R+ + + E ++ V ++ + P +LSGG +QR M + P + + DE
Sbjct: 102 LKIRKMPQAAIDEEVARVARLLQIEHLLERKPSQLSGGQQQRVAMGRALARRPKVYLFDE 161
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
S LD RV + M + + + ++VTHD + D+V VM G + + G
Sbjct: 162 PLSNLDAKL-RVEMRTELKLMHQRLKTTTVYVTHDQIEAMTLGDKVAVMKDGVIQQFGTP 220
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSG 269
+++ +PA+ + + S P + + +R G
Sbjct: 221 QQIYNDPANLFVASFIGSPPMNFIPLRLQRRDG 253
>gb|AAK42960.1| ABC transporter, ATP binding protein (glucose) [Sulfolobus
solfataricus]
Length = 353
Score = 80.8 bits (196), Expect = 2e-14
Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 21/248 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M + V+N+ ++ G V A+D V+ + GE FG+ G SG GK+T + + P
Sbjct: 1 MVRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 61 E---YKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAM--NALNPTKRIKDIVWDLA 115
Y + L+ P D + + ++ P N P +K
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK------- 111
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
+ E+ + + E ++ + V + +P ELSGG +QR + + + +P LL+ D
Sbjct: 112 -----MSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGGQQQRVALARALVKDPSLLLLD 165
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGP 235
E S LD + L+ +Q + +++ V+HD A + IADRV V+ GK+V++G
Sbjct: 166 EPFSNLDARMRDSARALVKE-VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
Query: 236 MEEVLENP 243
E++ +NP
Sbjct: 225 PEDLYDNP 232
>gb|AAD51830.1|AF175299_5 (AF175299) ThuK [Sinorhizobium meliloti]
Length = 342
Score = 80.4 bits (195), Expect = 3e-14
Identities = 72/261 (27%), Positives = 122/261 (46%), Gaps = 24/261 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L +R++R + G + GVS E+ GE G SGCGKSTL+ + +
Sbjct: 1 MAELQLRDIRKSF----GAFDVIKGVSMEIKPGEFMVFVGPSGCGKSTLLRLIAGLE--- 53
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
E G+ F G+ + ++ S I + AL P + + + +
Sbjct: 54 EITSGTLAFDGQ--------IVNQLTPSRRGIAMVFQSYALYPHMTVYENM-AFGMQLAG 104
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
D+++ + + M++L+P + + P +LSGG RQR + + + +P + + DE S
Sbjct: 105 KDKQQCRKRVEAAAEMLQLTPYL-ERLPRQLSGGQRQRVAIGRAIVRDPKVFLFDEPLSN 163
Query: 181 LDVTTQ---RVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
LD + R+ I LH M + ++I+VTHD +ADR+ V+ G V +IG
Sbjct: 164 LDAALRVATRLEIAKLHRSMHK---TTMIYVTHDQVEAMTLADRICVLRDGLVEQIGTPL 220
Query: 238 EVLENPAHPYTQLLLNSLPRM 258
E+ E P + + S P+M
Sbjct: 221 ELYETPNSVFVAGFIGS-PKM 240
>pir||E69098 phosphate transport system ATP-binding - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622862|gb|AAB86201.1| (AE000929) phosphate
transport system ATP-binding [Methanobacterium
thermoautotrophicum]
Length = 253
Score = 79.6 bits (193), Expect = 5e-14
Identities = 68/259 (26%), Positives = 114/259 (43%), Gaps = 27/259 (10%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M ++V +L VY+ + ++ ++ + V + G SGCGKST + +L +
Sbjct: 4 MYRIEVEDLNVYFDE----AHILKDINLKIPKNTVTALIGPSGCGKSTFIRTLNRMNDVI 59
Query: 61 E--YKGGSAIFKGRDLMSLPRD--ELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA- 115
G G+D+ D ELRK + M P K I ++A
Sbjct: 60 SGFRHEGHVYLDGKDIYDPDMDVVELRK----------KVGMVFQKPNPFPKSIFENVAY 109
Query: 116 --REHGYADRREVEELLRERLSMVKLSPRVADMYP---VELSGGMRQRATMVVSTLLNPD 170
R HGY DR +EE + E L L V D + LSGG +QR + + + P+
Sbjct: 110 GLRVHGYDDRDFIEERVEESLRAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAIEPE 169
Query: 171 LLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
+++ DE SALD + + +L+H + +II VTH++ +++ G++
Sbjct: 170 VILMDEPCSALDPISTTKIEDLIHKLKND---YTIIIVTHNMQQATRVSKYTAFFLHGEI 226
Query: 231 VEIGPMEEVLENPAHPYTQ 249
VE G E++ P T+
Sbjct: 227 VESGLTEQIFIEPRDKRTE 245
>pir||H71241 probable multiple sugar-binding transport ATP-binding protein -
Pyrococcus horikoshii >gi|3256580|dbj|BAA29263.1|
(AP000001) 375aa long hypothetical multiple
sugar-binding transport ATP-binding protein [Pyrococcus
horikoshii]
Length = 375
Score = 78.8 bits (191), Expect = 8e-14
Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 12/257 (4%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
+ + +V+ + ++ R G V AV +S E+ +GE + G SGCGK+T + + + P
Sbjct: 2 IGMAEVKLINIWKR--FGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 59
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKD-IVWDLAREHG 119
I+ +L++ P + + E + + AL P + D I + L
Sbjct: 60 R----GQIYIEDNLVADPEKGVF-VPPKERDVAMVFQSYALYPHMTVYDNIAFPLKLRK- 113
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
++E+++ +RE M+ L+ + + P ELSGG RQR + + + P + + DE S
Sbjct: 114 -VPKQEIDKRVREVAEMLGLT-ELLNRKPRELSGGQRQRVALGRAIIRRPKVFLMDEPLS 171
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD RV + +Q + + I+VTHD + DR+ VM G++ ++G +EV
Sbjct: 172 NLDAKL-RVKMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNKGELQQVGTPDEV 230
Query: 240 LENPAHPYTQLLLNSLP 256
P + + + S P
Sbjct: 231 YYKPVNTFVAGFIGSPP 247
>pir||S63613 probable ATP-binding protein cymD - Klebsiella oxytoca
>gi|854231|emb|CAA60003.1| (X86014) cymD [Klebsiella
oxytoca]
Length = 376
Score = 78.4 bits (190), Expect = 1e-13
Identities = 68/264 (25%), Positives = 117/264 (43%), Gaps = 32/264 (12%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA + +R + Y G+ +AV G+ E+ +GE G SGC KST + + +
Sbjct: 1 MATVSLRKIEKRYEN--GF-KAVHGIDLEIHDGEFMVFVGPSGCAKSTTLRMIAGLE--- 54
Query: 61 EYKGGSAIFKGRDLMSLP-RDELRKIQYSELSIIPQYAMN-----ALNPTKRIKDIVWDL 114
+ GG R + LP +D + + ++ P + L KR KD +
Sbjct: 55 DISGGEIYIGNRKVNDLPPKDRGIAMVFQNYALYPHKTVFDNMAFGLKMQKRPKDEI--K 112
Query: 115 AREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIA 174
R A++ E+ ELL + P E+SGG RQR + + + PD+ +
Sbjct: 113 RRVEDAAEKLEITELLYRK--------------PKEMSGGQRQRVAVGRAIVRKPDVFLF 158
Query: 175 DEITSALDV---TTQRVVIELLHHFM-QEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
DE S LD + R+ I LH + +EG ++I+VTHD + DR+ V+ G +
Sbjct: 159 DEPLSNLDAKLRVSMRMKIAQLHRSLKEEGHPATMIYVTHDQTEALTLGDRICVLNHGNI 218
Query: 231 VEIGPMEEVLENPAHPYTQLLLNS 254
+++ ++ P + + + S
Sbjct: 219 MQVDTPTDLYNYPNNKFVASFIGS 242
>gb|AAD03804.1| (AF047427) ATPase FbpC [Pasteurella haemolytica]
Length = 336
Score = 78.4 bits (190), Expect = 1e-13
Identities = 63/249 (25%), Positives = 120/249 (47%), Gaps = 24/249 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M++L + +L + + G + + + V + E+ + G SGCGK+TL+ ++ P
Sbjct: 1 MSVLTINHLNLNF----GSTKVLQNLHLAVNQNEIICLLGASGCGKTTLLKAIAGLLP-- 54
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+ G G L S + ++ ++ +I + AL P + D + + G
Sbjct: 55 -IEQGDIHLAGECLKS------KAVEERQIGLI--FQDYALFPHLTVADNI-----QFGL 100
Query: 121 ADRREVEE--LLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
+ +V++ + + LS+V L +P ELSGG +QR + + P+LL+ DE
Sbjct: 101 SKLPKVQQKAITEKMLSVVHLQG-FESRFPHELSGGQQQRVAIARALACQPELLLLDEPF 159
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
S +D T+ +I+ + ++ V + IFVTH AD++ VM GK+++ G E
Sbjct: 160 SNIDSQTRYAMIQEIKQILKSQNVPA-IFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE 218
Query: 239 VLENPAHPY 247
+ +P +P+
Sbjct: 219 LYHSPVNPF 227
>pir||A70338 ABC transporter - Aquifex aeolicus >gi|2983088|gb|AAC06694.1|
(AE000689) ABC transporter [Aquifex aeolicus]
Length = 219
Score = 77.6 bits (188), Expect = 2e-13
Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 19/233 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M +++++N++ Y P G + A+ GVS V EGE GV G SG GKSTL+H + P
Sbjct: 1 MKVVELKNVKKIY--PDGTI-ALKGVSLSVEEGEFLGVMGPSGSGKSTLLHLIGGLDKPS 57
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQ--YAMNALNPTKRIKDIVWDLAREH 118
E G G+++ L DEL +++ +++ + Q Y + + + + ++ +L
Sbjct: 58 E---GIVKVFGKEINHLDEDELAEMRKRKIAYVFQFYYLLEDFSVLENL-TLIGEL---- 109
Query: 119 GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
A + ++ E L ++LS R+ + P +LSGG +QR + + ++ P L++ADE T
Sbjct: 110 --AGIKNPKKKALELLDFLRLSHRI-NHKPYQLSGGEQQRVAIGRALMVEPKLILADEPT 166
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
LD + EL ++GI + + TH+ + L+ R++ + G++V
Sbjct: 167 GNLDSKEGFRIFELFKELNEKGI--TFVVATHNDS-LKPFFGRIINLRDGEIV 216
>gb|AAD32695.1|AF143949_1 (AF143949) glucose ABC transporter ATPase [Pseudomonas aeruginosa]
Length = 269
Score = 77.6 bits (188), Expect = 2e-13
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 24/270 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA L++RNL Y + G + + ++ GE + G SGCGKSTL++ + +
Sbjct: 1 MATLELRNLHKSYGS--GLADTLRDIRLKIDSGEFLILVGPSGCGKSTLMNCIAGLE--- 55
Query: 61 EYKGGSAIFKGRDLMSL-PRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
GG+ + G+D+ + P+D I + AL PT +++ + G
Sbjct: 56 SITGGAILVDGQDISGMSPKDR---------DIAMVFQSYALYPTMSVRENI-----AFG 101
Query: 120 YADRREVEELLRERLSMVKLSPRVADMY---PVELSGGMRQRATMVVSTLLNPDLLIADE 176
R+ + + E ++ V ++ + P +LSGG +QR M + P + + DE
Sbjct: 102 LKIRKMPQAAIDEEVARVARLLQIEHLLERKPSQLSGGQQQRVAMGRALARRPKVYLFDE 161
Query: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
S LD RV + M + + + ++VTHD + D+V VM G + + G
Sbjct: 162 QLSNLDAKL-RVEMRTELKLMHQRLKTTTVYVTHDQIEAMTLGDKVAVMKDGVIQQFGTP 220
Query: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRER 266
+++ +P + + + S P + + +R
Sbjct: 221 QQIYNDPDNLFVASFIGSPPMNFIPLRLQR 250
>dbj|BAB04758.1| (AP001510) iron (III) dicitrate transport system (permease)
[Bacillus halodurans]
Length = 271
Score = 77.3 bits (187), Expect = 2e-13
Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 28/248 (11%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M ++ +NL + Y + ++ + + +GE+ + G +GCGKSTL+ SL L KP
Sbjct: 1 MFSIETKNLTLGYDDTI----IIEELDLNIPKGEITVLIGGNGCGKSTLLRSLARLLKP- 55
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
+ G+ + +G + L E+ ++L+I+PQ P V+ L ++
Sbjct: 56 ---QSGAVLLEGSSIQQLATKEVA----TKLAILPQ------GPEAPEGLTVYQLIKQGR 102
Query: 120 YADR-------REVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLL 172
Y + + EE + + L +L+ +AD LSGG RQRA + ++ + +++
Sbjct: 103 YPHQGLFKKWTSKDEEKVMQALEATRLT-ELADRPVDALSGGQRQRAWIAMTLAQDTEII 161
Query: 173 IADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVE 232
+ DE T+ LD+T Q +++LL + E ++I+ V HDL L + A ++ + V
Sbjct: 162 LLDEPTTYLDLTHQIEILDLLFE-LNEREKRTIVMVLHDLNLACRYAHHLIAVKDRTVYA 220
Query: 233 IGPMEEVL 240
G EEV+
Sbjct: 221 QGKPEEVI 228
>pir||G69043 cobalt transport ATP-binding protein O - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621173|gb|AAB84639.1| (AE000802) cobalt transport
ATP-binding protein O [Methanobacterium
thermoautotrophicum]
Length = 280
Score = 76.9 bits (186), Expect = 3e-13
Identities = 67/243 (27%), Positives = 118/243 (47%), Gaps = 15/243 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTL-VHSLILRKPP 59
M +++ ++R Y P G A+ G++F GEV + G +G GKSTL +H + +P
Sbjct: 3 MRIIEAVDIRYTY--PDG-TEALRGINFHAERGEVVALLGPNGAGKSTLFLHFNGILQPT 59
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G + G +L + L K + ++ I+ Q + L + +D+ +
Sbjct: 60 ----SGKIMIDGEEL-DYSKSGLIKAR-QKVGIVFQNPDDQLFAPRVDEDVAFGPLNMGL 113
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
D EVEE +R+ L V + + P SGG ++R + + PD+++ DE TS
Sbjct: 114 SED--EVEERVRDALQKVGMLGYESKP-PHHFSGGEKKRVAIAGIIAMKPDIMVLDEPTS 170
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD ++ LLH+ +EG+ +II THD+ L +DR+ ++ G+++ G EV
Sbjct: 171 GLDPRGASQILRLLHNLNEEGM--TIIISTHDVDLAPLYSDRIYIISDGEIISTGAPSEV 228
Query: 240 LEN 242
+
Sbjct: 229 FSD 231
>dbj|BAB07632.1| (AP001520) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 253
Score = 76.9 bits (186), Expect = 3e-13
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 9/230 (3%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
MA+L+ N+ Y T + + G+ V +GE + G SG GK+TL++ L
Sbjct: 1 MAILEATNIHKSYGTKLNKQEVLKGIDIRVEKGEFVSIMGASGSGKTTLLNVL---SSID 57
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+ GS +G ++ L EL + + L I Q N L+ ++I+ L+
Sbjct: 58 KLSNGSIKIEGSEMTRLKEKELAQFRKKHLGFIFQ-EYNLLDTLTVKENILLPLSITK-- 114
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
R+ +E ++ + + + + D YP E+SGG +QRA+ + + P ++ ADE T A
Sbjct: 115 IPRKAADEKFKQVATELGIY-EIKDKYPNEISGGQKQRASAARAFIHEPSIIFADEPTGA 173
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
LD + ++ L + E + +I+ VTHD + RV+ + G++
Sbjct: 174 LDSKSASDLLGKLQQ-LNEKLRATIVMVTHD-PVAASYCSRVIFIKDGQI 221
>gb|AAK42084.1| ABC transporter, ATP binding protein. [Sulfolobus solfataricus]
Length = 530
Score = 76.5 bits (185), Expect = 4e-13
Identities = 68/244 (27%), Positives = 114/244 (45%), Gaps = 15/244 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLV---HSLILRK 57
M +++R+L+V Y +D + E EGE + G SG GKSTLV + +I
Sbjct: 1 MKFVEIRDLQVTYMGKTKPSIVIDKLDIE--EGESVLITGRSGSGKSTLVSVINGVIPHL 58
Query: 58 PPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLARE 117
E KG +F G D+ + P E+ + + L A N I ++ + + E
Sbjct: 59 INAEVKGEVRVF-GLDIKTTPTSEISRYVGTLLQDPDTQAFNYTV----IDEVAFGV--E 111
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+ R E+ + E + + +S + D LSGG QR + + P LI DE
Sbjct: 112 NYMVSREEMINRVEESMKICGIS-HLRDREINTLSGGELQRTVLASVLAMRPKALILDEP 170
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
TS +D R ++EL+ F EGI S++ V H + + DR++V+ +GK+ +
Sbjct: 171 TSNIDPQGTREILELVKTFRSEGI--SLVLVEHKIERVLPFIDRIIVVESGKIAVDIKKD 228
Query: 238 EVLE 241
E+++
Sbjct: 229 EIID 232
>dbj|BAB06418.1| (AP001516) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 251
Score = 76.5 bits (185), Expect = 4e-13
Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 1 MALLDVRNLRVYY-----RTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLIL 55
M +L+ +L Y RT VG +D VS V +G+ + G SG GK+TL++ L
Sbjct: 1 MIILEANHLHKVYGEGGTRTTVG----LDQVSLRVKKGDFLAIMGPSGSGKTTLLNLLSG 56
Query: 56 RKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLA 115
P G+ + G D+ + ++L + EL + Q N L+ ++I+ +
Sbjct: 57 IDAPTS---GTIVINGDDISKMDGNQLALFRRKELGFVFQ-EFNLLDSLTVKENIMVPMI 112
Query: 116 REHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
E A + +EE +E +S+ + +A+ YP LSGG +QR + + + P +L AD
Sbjct: 113 LEKKSA--KHMEEKAKEVMSIFGIDG-LANKYPYHLSGGQQQRVAVSRALVNEPSILFAD 169
Query: 176 EITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDL 212
E T LD + +V++E + +I+ VTHD+
Sbjct: 170 EPTGNLDSKSSKVIMECFEQIVNH-YQTTILLVTHDV 205
>emb|CAB76006.1| (AL157916) putative ABC transporter, ATP-binding subunit
[Streptomyces coelicolor A3(2)]
Length = 312
Score = 76.1 bits (184), Expect = 5e-13
Identities = 74/270 (27%), Positives = 130/270 (47%), Gaps = 37/270 (13%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPP 59
M +++V +LR Y G VDGVSF V EGE+FGV G +G GK+T V + LR P
Sbjct: 13 MPVIEVTDLRKSY----GGRPVVDGVSFAVEEGEIFGVLGPNGAGKTTTVECVEGLRVP- 67
Query: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
G G D P + R++ +E+ + Q + L P +++ + A +
Sbjct: 68 ---DAGRVRVTGLD----PVADHRRV--AEV-LGAQLQQSELQPKLTVREALELYAAFYP 117
Query: 120 Y-ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
AD R L ERL +V + D +LSGG +QR + ++ + +P +++ DE+T
Sbjct: 118 KPADWRP----LAERLDLVPM----LDTRFAKLSGGQKQRLFIALALVGDPRVVVLDELT 169
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEE 238
+ LD +R +L+ G+ +++ VTH + +++ DR+ V+ G++ +
Sbjct: 170 TGLDPRARRETWQLIEDIRAGGV--TVLLVTHFMEEAQRLCDRIAVIDRGRIAALDTPAG 227
Query: 239 VLE----------NPAHPYTQLLLNSLPRM 258
++ P+ P + L +LP +
Sbjct: 228 LIRRSTGATVISFTPSAPLDEADLRALPEL 257
>gi|11499468 daunorubicin resistance ATP-binding protein (drrA) [Archaeoglobus
fulgidus] >gi|7445660|pir||C69485 daunorubicin
resistance ATP-binding protein (drrA) homolog -
Archaeoglobus fulgidus >gi|2648659|gb|AAB89368.1|
(AE000972) daunorubicin resistance ATP-binding protein
(drrA) [Archaeoglobus fulgidus]
Length = 398
Score = 76.1 bits (184), Expect = 5e-13
Identities = 70/242 (28%), Positives = 112/242 (45%), Gaps = 23/242 (9%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M ++V NL + G AV GVSF+V GE+F G +G GK+T VH L P
Sbjct: 77 MYAIEVENLVKKF----GDFEAVRGVSFKVKRGEIFAFLGPNGAGKTTTVHILTTLLKPT 132
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
G A G D++ R+ R+I I+ Q +P+ ++ HG
Sbjct: 133 S---GKAFVAGLDVVREAREVRRRI-----GIVFQ------DPSVDRDLTAYENMLVHGG 178
Query: 121 A---DRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+E++E + L V+L D SGGM++R + S L +P++L DE
Sbjct: 179 VYGLKGKELKEKIERLLKFVELW-EFRDKLVKYFSGGMQRRLEIARSLLHHPEVLFLDEP 237
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
T LD T+ V + +E + +I TH + ++ADRV ++ G+++ G +E
Sbjct: 238 TIGLDPQTRAHVWSYIEAMKEEQDM-TIFLTTHYMEEAEKLADRVAIIDHGRIIAEGSVE 296
Query: 238 EV 239
E+
Sbjct: 297 EL 298
>gb|AAK42217.1| ABC transporter [Sulfolobus solfataricus]
Length = 530
Score = 76.1 bits (184), Expect = 5e-13
Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 15/251 (5%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLV---HSLILRK 57
M +++R+L+V Y VD + E EGE + G SG GKSTLV + +I
Sbjct: 1 MKFVEIRDLQVTYMGKDKPSIVVDKLDIE--EGESVLITGRSGSGKSTLVSVINGVIPHL 58
Query: 58 PPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLARE 117
E KG +F G D+ S P E+ K + L A N I ++ + + E
Sbjct: 59 INAEIKGEVRVF-GFDVKSTPIHEISKYVGTLLQDPDTQAFNYTI----IDEVAFGV--E 111
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+ R E+ E + E + + +S + D LSGG QR + + P LI DE
Sbjct: 112 NYMISRDEMIERVEESMKIYGIS-HLRDREINTLSGGELQRTILASVLAMRPKALILDEP 170
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
TS +D R ++EL+ F EGI S++ V H + + DR++V+ GK+ +
Sbjct: 171 TSNIDPQGTREILELVKTFRSEGI--SLVLVEHKIERVLPFVDRIIVVEEGKIAVDVRKD 228
Query: 238 EVLENPAHPYT 248
E+++ Y+
Sbjct: 229 EIVDKADFLYS 239
>pir||G71192 probable cobalt transport ATP-binding protein - Pyrococcus
horikoshii >gi|3258251|dbj|BAA30934.1| (AP000007) 284aa
long hypothetical cobalt transport ATP-binding protein
[Pyrococcus horikoshii]
Length = 284
Score = 76.1 bits (184), Expect = 5e-13
Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 22/249 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTL---VHSLILRK 57
M +++V ++ Y Y ++ ++ E+ +GE G+ G SG GKST ++ LI
Sbjct: 1 MNVIEVEDVSFRYGNSREY--SLRHINLEIRKGEFLGIIGPSGSGKSTFCLTLNGLIPHS 58
Query: 58 PPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVW----D 113
E+ G + D L ++S + + + NP ++ ++
Sbjct: 59 IAGEFHGNVIV-----------DGLNTREHSVSELSTKVGLVFQNPDSQLFNMTVLEEVA 107
Query: 114 LAREHGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLI 173
A E+ +R E+ +R L +V+L + + +P LSGG +QR + ++ P +L+
Sbjct: 108 FALENLGIERDEMWRRIRWALKLVRLWDK-REEFPPNLSGGEKQRLAIASVLVMKPKVLV 166
Query: 174 ADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
DE TS LD + V+ L+ +E + +II V H+ L + ADR++V G++V
Sbjct: 167 LDEPTSQLDPLGREEVLGLIKLLNKEEKI-TIILVEHNTDFLLEHADRIVVFDKGRIVLE 225
Query: 234 GPMEEVLEN 242
G E+V EN
Sbjct: 226 GKPEDVFEN 234
>pir||T43920 YfuC protein [imported] - Yersinia enterocolitica
>gi|619575|emb|CAA87396.1| (Z47200) YfuC protein
[Yersinia enterocolitica]
Length = 349
Score = 75.7 bits (183), Expect = 7e-13
Identities = 74/259 (28%), Positives = 118/259 (44%), Gaps = 30/259 (11%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M+ LD + Y++ VR ++G+ +V G + G SG GK+TL+ + + P
Sbjct: 1 MSTLDFNKIGKSYQS----VRVLEGIDLQVTAGSRTAIVGPSGSGKTTLLRIIAGFETP- 55
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSI--IPQYAMNALNPT-KRIKDIVWDLARE 117
G I +G L D+ + + I +PQ AL P +I + L
Sbjct: 56 --DSGKVILQGNPLF----DQSTHVPAHKRGIGFVPQDG--ALFPHFTAAGNIAYGLK-- 105
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+++ + + + MV L R+A ++P E+SGG +QR + + P L++ E
Sbjct: 106 ---GSKQDKARRIDKLMEMVALDRRLAQLWPHEISGGQQQRVALARALGQRPALMLLVEP 162
Query: 178 TSALD----VTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEI 233
S LD +T++ V ELL Q I I VTHD + AD+V VM AGK+V +
Sbjct: 163 FSTLDTALRASTRKAVAELL---SQANIAS--ILVTHDQSEALSFADQVAVMRAGKLVHV 217
Query: 234 GPMEEVLENPAHPYTQLLL 252
G +E+ P T L
Sbjct: 218 GAPQELYLRPIDEPTATFL 236
>sp|P54933|SMOK_RHOSH ATP-BINDING TRANSPORT PROTEIN SMOK (POLK)
>gi|2338762|gb|AAC45769.1| (AF018073) sorbitol/mannitol
transport ATP-binding transport protein; SmoK
[Rhodobacter sphaeroides]
Length = 332
Score = 75.7 bits (183), Expect = 7e-13
Identities = 64/261 (24%), Positives = 121/261 (45%), Gaps = 21/261 (8%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M + +RN++ + G + + ++ +GE G SGCGKSTL+ + +
Sbjct: 1 MGKITLRNVQKRF----GEAVVIPSLDLDIEDGEFVVFVGPSGCGKSTLLRLIAGLE--- 53
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIK-DIVWDLAREHG 119
+ G + GRD +P ++ + + AL P +K +I + L
Sbjct: 54 DVSDGQIMIDGRDATEMPP--------AKRGLAMVFQSYALYPHMTVKKNIAFPLRMAK- 104
Query: 120 YADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITS 179
+ +E+E + ++ L+ D P +LSGG RQR + + + P + DE S
Sbjct: 105 -MEPQEIERRVSNAAKILNLT-NYLDRRPGQLSGGQRQRVAIGRAIVREPAAFLFDEPLS 162
Query: 180 ALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEV 239
LD RV + L + + + ++I+VTHD +AD+++V+ AG++ ++G +
Sbjct: 163 NLDAAL-RVNMRLEITELHQSLETTMIYVTHDQVEAMTMADKIVVLNAGRIEQVGSPLTL 221
Query: 240 LENPAHPYTQLLLNSLPRMGV 260
NPA+ + + S P+M +
Sbjct: 222 YRNPANLFVAGFIGS-PKMNL 241
>gb|AAF13757.1|AF117351_14 (AF117351) hypothetical ABC transpoter ATP-binding protein
[Zymomonas mobilis]
Length = 261
Score = 75.7 bits (183), Expect = 7e-13
Identities = 71/247 (28%), Positives = 112/247 (44%), Gaps = 19/247 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M LL RNLR + V +D +S +GE+ + G +G GKSTL+ L+ PP
Sbjct: 12 MTLLQARNLRYRRQKTV----ILDDISLSFHQGELTALLGINGAGKSTLLRLLLGLMPPD 67
Query: 61 EYKGGSAIFKGRDLMSLPRDEL-RKIQY--SELSIIPQYAMNALNPTKRIKDIVWDLARE 117
E G+ + + L ++ R + R I Y E I Y + + R+ I + +
Sbjct: 68 E---GNIFLQNKPLKAISRKTIARHIAYVPQEHKAIFPYTVEEVVSLGRLPYIAF--GQN 122
Query: 118 HGYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEI 177
+D++ V + L + L++ LS R ELSGG RQ + + +L+ DE
Sbjct: 123 LSLSDKQAVRQAL-DYLNIASLSARPY----TELSGGERQSVLLARALAQGAPILVLDEP 177
Query: 178 TSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPME 237
+ LD Q + LL EG I+ THD RQI R +++ G+++ G +
Sbjct: 178 ETGLDFGQQLRLAVLLQKLADEGY--CIVATTHDPLRARQIFSRAILLQQGRIIADGAPK 235
Query: 238 EVLENPA 244
VL A
Sbjct: 236 SVLTRSA 242
>emb|CAB60755.1| (Y18641) ATP-binding protein [Staphylococcus aureus]
>gi|9501787|dbj|BAB03336.1| (AB035452) ABC transporter
[Staphylococcus aureus]
Length = 252
Score = 75.3 bits (182), Expect = 9e-13
Identities = 63/232 (27%), Positives = 116/232 (49%), Gaps = 14/232 (6%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M +L V+++ Y + +A+ ++F++ +GE + G SG GK+TL++ L
Sbjct: 1 MTILSVQHVSKTYGKKHTF-QALKDINFDIQKGEFVAIMGPSGSGKTTLLNVL---SSID 56
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKD-IVWDLA-REH 118
+ GS I G++L L + L K + L I + ++ PT +K+ I+ L+ ++
Sbjct: 57 QISSGSVIANGQELNKLNQKALAKFRKESLGFI--FQDYSILPTLTVKENIMLPLSVQKM 114
Query: 119 GYADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEIT 178
A E + + L + L + YP ELSGG +QR + + P ++ ADE T
Sbjct: 115 SKATMEENYKAITTALGIYDLGNK----YPSELSGGQQQRTAAARAFVHKPQIIFADEPT 170
Query: 179 SALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKV 230
ALD + +++ L M + +I+ VTHD + A+RV+++ G++
Sbjct: 171 GALDSKSANDLLQRLEE-MNKSFDTTIVMVTHD-PVAASFAERVIMLKDGQI 220
>pir||F82303 ABC transporter, ATP-binding protein VC0589 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655020|gb|AAF93756.1| (AE004144) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 305
Score = 75.3 bits (182), Expect = 9e-13
Identities = 63/240 (26%), Positives = 118/240 (48%), Gaps = 17/240 (7%)
Query: 1 MALLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPPM 60
M L++ LR +T G A+ G+S +V +G+ + + G +G GKST + I+
Sbjct: 1 MYALEIEQLR---KTYAGGFEALKGISLQVKKGDFYALLGPNGAGKSTTIG--IISSLVN 55
Query: 61 EYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
+ G +F G DL D ++ +L ++PQ NP + ++ IV A +G
Sbjct: 56 KTSGKVTVF-GYDL-----DSQLELAKQKLGLVPQEFN--FNPFETVEQIVLQQAGYYG- 106
Query: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
+ +E ++ L+ + L + ++ LSGGM++R + + + P LLI DE T+
Sbjct: 107 VPKALAKERAKKYLTQLDLWEKRSERAR-NLSGGMKRRLMIARALMHEPQLLILDEPTAG 165
Query: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
+D+ +R + E L +G+ +II TH L + + ++ G+++E M+ +L
Sbjct: 166 VDIELRRSMWEFLKQINAQGV--TIILTTHYLEEAEMLCRHIGIIQRGELIENTTMKSLL 223
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119136549
Number of Sequences: 2977
Number of extensions: 4919585
Number of successful extensions: 20024
Number of sequences better than 1.0e-10: 1075
Number of HSP's better than 0.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 982
Number of HSP's that attempted gapping in prelim test: 17435
Number of HSP's gapped (non-prelim): 1338
length of query: 322
length of database: 189,106,746
effective HSP length: 54
effective length of query: 268
effective length of database: 156,788,448
effective search space: 42019304064
effective search space used: 42019304064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)