BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0631 (appF-3) DE:OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN
APPF
(322 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 655 0.0
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 519 e-146
pir||F71163 probable oligopeptide transport ATP-binding protein ... 488 e-137
pir||A72282 oligopeptide ABC transporter, ATP-binding protein - ... 377 e-103
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 284 7e-76
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 281 6e-75
pir||F71130 probable oligopeptide transport ATP-binding protein ... 279 3e-74
pir||A72284 oligopeptide ABC transporter, ATP-binding protein - ... 273 2e-72
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 267 1e-70
pir||F71211 probable oligopeptide transport ATP-binding protein ... 263 3e-69
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 262 4e-69
pir||E72428 oligopeptide ABC transporter, ATP-binding protein - ... 262 4e-69
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 261 8e-69
pir||E72393 oligopeptide ABC transporter, ATP-binding protein - ... 261 1e-68
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 256 2e-67
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 254 1e-66
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 247 2e-64
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 243 2e-63
pir||A72618 probable oligopeptide transport ATP-binding protein ... 242 6e-63
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 235 8e-61
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 232 4e-60
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 230 1e-59
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 229 3e-59
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 229 3e-59
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 229 3e-59
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 228 6e-59
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 227 1e-58
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 222 3e-57
pir||C72536 probable oligopeptide transport ATP-binding protein ... 222 3e-57
pir||F70141 probable oligopeptide transport ATP-binding protein ... 222 4e-57
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 220 2e-56
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 220 2e-56
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 220 2e-56
pir||A72452 probable peptide transport ATP-binding protein APE22... 220 2e-56
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 219 3e-56
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 219 3e-56
pir||E71130 probable oligopeptide transport ATP-binding protein ... 219 4e-56
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 218 8e-56
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 218 8e-56
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 217 1e-55
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 217 1e-55
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 217 2e-55
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 216 2e-55
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 216 3e-55
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 216 3e-55
pir||G71211 probable oligopeptide transport ATP-binding protein ... 214 9e-55
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 214 1e-54
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 213 2e-54
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 213 2e-54
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 212 4e-54
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 212 6e-54
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 212 6e-54
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 212 6e-54
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 210 1e-53
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 209 4e-53
gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 209 4e-53
pir||C72452 probable peptide transport ATP-binding protein APE22... 208 5e-53
sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 208 7e-53
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 208 7e-53
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 208 7e-53
pir||D71163 probable oligopeptide transport ATP-binding protein ... 208 9e-53
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 207 2e-52
pir||E72536 probable oligopeptide transport ATP-binding protein ... 207 2e-52
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 207 2e-52
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 205 5e-52
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 204 1e-51
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 204 1e-51
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 204 1e-51
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 204 1e-51
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 203 2e-51
sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 203 2e-51
gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis] ... 203 2e-51
emb|CAC12447.1| (AL445067) probable dipeptide transport system, ... 203 2e-51
gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding;... 203 2e-51
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 203 3e-51
emb|CAA39791.1| (X56347) OppF [Bacillus subtilis] 202 4e-51
emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyo... 202 4e-51
gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus p... 202 5e-51
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 201 7e-51
gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia... 201 9e-51
sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 201 9e-51
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 201 9e-51
pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 ... 200 2e-50
gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T... 200 2e-50
pir||T35983 probable peptide transport ATP-binding protein - Str... 200 2e-50
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 199 5e-50
dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 198 6e-50
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 198 8e-50
pir||F71483 probable dipeptide transport - Chlamydia trachomatis... 196 2e-49
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 196 2e-49
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 195 5e-49
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 194 9e-49
pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 ... 194 1e-48
emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter... 194 2e-48
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 193 2e-48
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 193 3e-48
pir||C72371 oligopeptide ABC transporter, ATP-binding protein - ... 192 3e-48
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 192 5e-48
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 192 5e-48
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 192 5e-48
pir||C72720 probable oligopeptide transport ATP-binding protein ... 191 8e-48
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 191 1e-47
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 190 1e-47
pir||T45281 probable ABC transporter intracellular ATPase chain ... 190 1e-47
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 190 1e-47
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 190 2e-47
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 189 3e-47
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 189 3e-47
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 189 3e-47
pir||H70788 probable peptidetransport system ABC-transporter ATP... 189 5e-47
pir||F64557 dipeptide transport ATP-binding protein dppF - Helic... 188 7e-47
pir||A71952 dipeptide transport system ATP-binding protein - Hel... 188 7e-47
pir||T03432 probable transport protein accC - Agrobacterium tume... 188 9e-47
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 188 9e-47
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 188 9e-47
pir||E64820 probable oligopeptide transport protein - Escherichi... 187 2e-46
dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-bindin... 187 2e-46
sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 187 2e-46
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 186 3e-46
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 186 3e-46
gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1] 186 3e-46
pir||H71951 dipeptide transport system dipeptide transport syste... 186 3e-46
gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocy... 186 3e-46
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 185 4e-46
gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus ... 185 8e-46
sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 184 1e-45
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 183 2e-45
pir||QREBOT oligopeptide transport protein oppD - Salmonella typ... 183 2e-45
dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elon... 183 3e-45
sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 182 4e-45
pir||D72720 probable oligopeptide transport ATP-binding protein ... 182 4e-45
gi|10954942 Probable accC [Agrobacterium tumefaciens] >gi|649829... 182 4e-45
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 182 4e-45
pir||S75333 oligopeptide transport protein oppF - Synechocystis ... 182 5e-45
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 182 7e-45
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 180 2e-44
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 179 3e-44
pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 ... 179 3e-44
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 179 3e-44
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 179 4e-44
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 178 6e-44
sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 178 8e-44
pir||F72617 probable dipeptide transport system ATP-binding prot... 177 1e-43
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 174 1e-42
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 172 4e-42
pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei ... 171 1e-41
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 166 3e-40
gb|AAD48154.1|AF086618_1 (AF086618) ABC transporter homolog [Loo... 163 3e-39
dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus] 162 4e-39
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 161 1e-38
pir||T45280 probable ABC transporter intracellular ATPase chain ... 159 3e-38
pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 ... 159 3e-38
sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 158 7e-38
sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 157 2e-37
sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 157 2e-37
pir||A82876 oligopeptide transport system permease protein UU560... 156 3e-37
dbj|BAB05518.1| (AP001513) oligopeptide ABC transporter (ATP-bin... 156 3e-37
gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . ... 153 3e-36
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 152 4e-36
emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding prot... 143 4e-33
sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 142 6e-33
pir||H64716 ABC transporter, ATP-binding protein - Helicobacter ... 141 1e-32
gb|AAC45666.1| (AF010307) AbcC [Helicobacter pylori] 140 2e-32
pir||F71800 ABC transporter, ATP-binding protein - Helicobacter ... 139 3e-32
sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 134 1e-30
gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 132 5e-30
emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding ... 127 1e-28
pir||H83609 sulfate transport protein CysA PA0280 [imported] - P... 127 1e-28
emb|CAA68077.1| (X99740) oligopeptide transport ATP-binding prot... 126 3e-28
sp|P38045|NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC ... 125 5e-28
pir||F81875 sulfate ABC transporter, ATP-binding protein NMA1097... 125 9e-28
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 124 2e-27
pir||B81147 sulfate ABC transporter, ATP-binding protein NMB0879... 124 2e-27
sp|P75957|YCFV_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 118 7e-26
dbj|BAA35937.1| (D90747) Heterocyst maturation protein (devA) ho... 118 7e-26
dbj|BAB06849.1| (AP001517) sulfate ABC transporter (ATP-binding ... 117 1e-25
sp|P16676|CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN CYSA ... 117 2e-25
pir||G83607 polyamine transport protein PotG PA0302 [imported] -... 116 3e-25
gi|7524830 sulfate transport system permease protein [Chlorella ... 116 3e-25
gi|11466425 probable transport protein [Mesostigma viride] >gi|7... 116 4e-25
gb|AAA23639.1| (M32101) cysA [Escherichia coli] 114 2e-24
pir||H82694 sulfate ABC transporter ATP-binding protein XF1347 [... 114 2e-24
dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.] 113 2e-24
dbj|BAB04472.1| (AP001509) ABC transporter (ATP-binding protein)... 113 4e-24
dbj|BAB06418.1| (AP001516) ABC transporter (ATP-binding protein)... 112 7e-24
pir||C82310 sulfate ABC transporter, ATP-binding protein VC0541 ... 109 3e-23
dbj|BAB03992.1| (AP001507) ABC transporter (ATP-binding protein)... 109 4e-23
sp|P57383|LOLD_BUCAI LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 108 7e-23
sp|Q44613|LOLD_BUCAP LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 106 3e-22
pir||A72401 ABC transporter, ATP-binding protein - Thermotoga ma... 106 4e-22
pir||S75959 nitrate transport protein C-1 - Synechocystis sp. (s... 105 6e-22
pir||A70001 ABC transporter (ATP-binding protein) homolog ytsC -... 105 8e-22
pir||C64666 glutamine transport protein glnQ - Helicobacter pylo... 104 1e-21
gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus... 104 1e-21
emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Su... 104 1e-21
gb|AAD53162.1|AF176824_5 (AF176824) ATP-binding protein of ABC t... 102 4e-21
gi|11467821 probable transport protein [Nephroselmis olivacea] >... 102 4e-21
pir||D81303 branched-chain amino-acid ABC transport system ATP-b... 100 2e-20
pir||A64703 ABC transporter, ATP-binding protein - Helicobacter ... 99 6e-20
pir||H71817 probable amino acid ABC transporter, ATP-binding pro... 99 6e-20
gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein... 98 1e-19
dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacill... 97 2e-19
pir||D81435 probable iron-uptake ABC transport system ATP-bindin... 96 4e-19
pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding pr... 96 4e-19
pir||E82120 zinc ABC transporter, ATP-binding protein VC2082 [im... 96 7e-19
pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A... 94 3e-18
emb|CAB94640.1| (AL359215) putative iron transport protein, ATP-... 94 3e-18
pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB... 93 4e-18
dbj|BAB04009.1| (AP001508) ABC transporter (ATP-binding protein)... 93 5e-18
gi|11498428 branched-chain amino acid ABC transporter, ATP-bindi... 92 8e-18
sp|Q57243|YC72_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 92 8e-18
gb|AAK41273.1| Sugar ABC transporter [Sulfolobus solfataricus] 91 1e-17
sp|P45092|ARTP_HAEIN ARGININE TRANSPORT ATP-BINDING PROTEIN ARTP... 89 5e-17
dbj|BAB04167.1| (AP001508) ABC transporter (ATP-binding protein)... 88 1e-16
pir||A70158 ABC transporter, ATP-binding protein homolog - Lyme ... 86 5e-16
gb|AAF43495.1|AF130119_2 (AF130119) oligopeptide permease F [Myc... 85 1e-15
pir||D71550 probable ABC transporter ATPase - Chlamydia trachoma... 85 1e-15
pir||E72314 ribose ABC transporter, ATP-binding protein - Thermo... 84 2e-15
pir||E81261 probable ABC transport system ATP-binding protein Cj... 83 3e-15
pir||D72485 probable high-affinity branched-chain amino acid tra... 83 5e-15
pir||D71179 probable sugar ABC transporter - Pyrococcus horikosh... 82 7e-15
pir||G72687 probable high-affinity branched-chain amino acid tra... 82 9e-15
pir||F72405 ABC transporter, ATP-binding protein - Thermotoga ma... 81 2e-14
sp|P15031|FECE_ECOLI IRON(III) DICITRATE TRANSPORT ATP-BINDING P... 80 3e-14
dbj|BAB11402.1| (AP002543) ABC transporter-like protein [Arabido... 80 3e-14
pir||F71554 probable ABC amino acid transporter ATPase - Chlamyd... 79 6e-14
pir||D72101 ABC transporter ATPase - Chlamydophila pneumoniae (s... 79 8e-14
gb|AAK41504.1| ABC transporter, ATP binding protein [Sulfolobus ... 78 1e-13
pir||T44443 gliding motility protein [imported] - Flavobacterium... 78 1e-13
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 78 2e-13
pir||D70984 probable drrA protein - Mycobacterium tuberculosis (... 77 3e-13
pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii... 76 4e-13
pir||D81706 amino acid ABC transporter, ATP-binding protein TC04... 76 7e-13
emb|CAC11348.1| (AL445063) FERRIC TRANSPORT ATP-BINDING PROTEIN ... 74 2e-12
pir||F81431 ABC transporter ATP-binding protein Cj0142c [importe... 74 3e-12
pir||I40516 spaF protein - Bacillus subtilis 73 5e-12
gb|AAB91597.1| (U09819) SpaF [Bacillus subtilis] 73 5e-12
pir||T18288 ABC transport protein - slime mold (Dictyostelium di... 70 3e-11
gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Myc... 69 9e-11
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 655 bits (1671), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT
Sbjct: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD
Sbjct: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS
Sbjct: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF
Sbjct: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
Query: 241 HNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRP 300
HNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRP
Sbjct: 241 HNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRP 300
Query: 301 TLIEVEKNHWVACHLYQSSREG 322
TLIEVEKNHWVACHLYQSSREG
Sbjct: 301 TLIEVEKNHWVACHLYQSSREG 322
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 519 bits (1323), Expect = e-146
Identities = 248/319 (77%), Positives = 285/319 (88%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
MLLEVQNLTKIFTSGLIGGYQVRAVD V+F+I EGEIVSLVGESGSGKTTIGKLILRL+
Sbjct: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIK 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG+ILF+G+DI F K +L YYY+ VQAVFQDPFASFNPL++VD+VF ++F ++ +
Sbjct: 61 PTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLVFRTFLKN 120
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ E++E++ +ALE VGLNP E+ GK+PHQLSGGQLQRILIARALL++P LLIADEAVS
Sbjct: 121 VSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLIADEAVS 180
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
MLDASTRIDVLNLLGEFRD +GTSV+FITHDLALGYYISD IIMYRG+IVE G+TEKVF
Sbjct: 181 MLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWGDTEKVF 240
Query: 241 HNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRP 300
NPLHPYTKMLLESVPDLNVKWEFKGIEPE+EEGKVW++KGC++APRC AKD C+KIRP
Sbjct: 241 DNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDKCWKIRP 300
Query: 301 TLIEVEKNHWVACHLYQSS 319
+EVEKNHWVACHLY S
Sbjct: 301 EPVEVEKNHWVACHLYGGS 319
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 488 bits (1242), Expect = e-137
Identities = 230/316 (72%), Positives = 277/316 (86%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++LE++++TK+FTSGL GGY+VRAVD VSF + EGEIVSL+GESGSGKTTIGKLILRLL
Sbjct: 3 LVLELEHVTKVFTSGLFGGYEVRAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLILRLLK 62
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSGRILF G+DI F +++L+ YYY+ VQAVFQDPFASFNPLH+VD+VF ++F ++
Sbjct: 63 PTSGRILFRGEDIWSFDREKLRRYYYKNVQAVFQDPFASFNPLHKVDRVFDLVFRNFLRG 122
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ EREE+I ++LE VGLNP EV GKYPHQLSGGQLQRILIARALL++P LLIADEAVS
Sbjct: 123 VAPGEREELIKRSLESVGLNPGEVLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVS 182
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
MLDASTRID+LNLLGEFRDK+GTSV+FITHDLALGYYISD +IMYRG IVE G+ E+VF
Sbjct: 183 MLDASTRIDILNLLGEFRDKFGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERVF 242
Query: 241 HNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRP 300
NPLHPYT+MLLESVPDL+V+WEFKGIEPE+EE +V++IKGCR+APRCP A+ C++ P
Sbjct: 243 GNPLHPYTRMLLESVPDLSVRWEFKGIEPEREEERVYEIKGCRFAPRCPYARKECYEKPP 302
Query: 301 TLIEVEKNHWVACHLY 316
IE+EKNH VAC+LY
Sbjct: 303 QTIEIEKNHHVACYLY 318
>pir||A72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981772|gb|AAD36294.1|AE001778_15 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 315
Score = 377 bits (957), Expect = e-103
Identities = 186/313 (59%), Positives = 235/313 (74%), Gaps = 6/313 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+VQNLTK F G G +++AVD VSF I IVSL+GESGSGKTT+GKLIL+L+ P
Sbjct: 3 LLKVQNLTKEFPLGFFGKERLKAVDDVSFEIERSRIVSLIGESGSGKTTVGKLILKLIRP 62
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
+SG+IL G+DI + +EL+ YY RKVQ VFQDPF+SFNP++++D+V M+F+ +FPD
Sbjct: 63 SSGQILLNGRDITQIKGRELREYY-RKVQGVFQDPFSSFNPIYKIDRVLDMVFEEFFPDT 121
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
ER +++ + VG+NP E+ GKYPHQLSGGQLQRILIAR LLL LLIADE +SM
Sbjct: 122 PASERRTKMEEVIASVGMNPREILGKYPHQLSGGQLQRILIARTLLLNVELLIADEIISM 181
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LDASTR+D+LNLLG+ R++ G SV+FITHDL+LGYYISD T IMYRG IVEMG+TEKVFH
Sbjct: 182 LDASTRVDILNLLGDLRER-GMSVIFITHDLSLGYYISDETFIMYRGNIVEMGDTEKVFH 240
Query: 242 NPLHPYTKMLLESVPDLNVKWEF-KGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRP 300
NP+HPYTKMLLESVP+++ KW+ K PE C+Y RCP + C +P
Sbjct: 241 NPIHPYTKMLLESVPEIDRKWDLSKRFIPELVSS---SNAPCKYYDRCPIRDERCLVQKP 297
Query: 301 TLIEVEKNHWVAC 313
++EVE+NH V C
Sbjct: 298 AMVEVEENHKVLC 310
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 284 bits (720), Expect = 7e-76
Identities = 155/325 (47%), Positives = 214/325 (65%), Gaps = 13/325 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQ------VRAVDGVSFTINEGEIVSLVGESGSGKTTIGK 53
L+EVQNL K F G I V+AVDGV+F I+EG+ + LVGESGSGKTT G+
Sbjct: 3 LIEVQNLKKYFPVKQGPIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGR 62
Query: 54 LILRLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMI 113
+ILRL PT G+I+F+G+DI K SK+E++ +++Q +FQDP AS NP +V K
Sbjct: 63 VILRLEEPTDGKIIFDGRDITKLSKEEMRKLR-KEMQIIFQDPMASLNPYMRVGKAIEHA 121
Query: 114 FDSYFPDLG-REEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPR 171
+ + +G R R+EM+ + L V L P+E + +YP +LSGGQ QR++IARAL+LKPR
Sbjct: 122 LEIH--GIGDRSSRKEMVLEMLRRVNLEPAEDIYRRYPRELSGGQRQRVVIARALILKPR 179
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIV 231
L++ADEAV+MLD S R +L LL E R ++ ++LFITHDLA Y+ D +MY G IV
Sbjct: 180 LVVADEAVAMLDVSVRSQLLRLLQELRKEFNLTMLFITHDLATTKYVCDEIAVMYLGKIV 239
Query: 232 EMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKA 291
E+G+ E ++ NP HPYT+ L+ +VP+ ++K + K I + + GCR+ PRCP
Sbjct: 240 EIGDFEDIYLNPKHPYTQALISAVPEPSLKKKKKFIPEGETPNPIDVPSGCRFHPRCPYR 299
Query: 292 KDVCFKIRPTLIEVEKNHWVACHLY 316
D+C K P L VE+NH VACHLY
Sbjct: 300 MDICMKEEPQLKAVEENHKVACHLY 324
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 281 bits (712), Expect = 6e-75
Identities = 154/321 (47%), Positives = 214/321 (65%), Gaps = 8/321 (2%)
Query: 2 LLEVQNLTKIFTSGLI-GGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
LLE++NLTKIFT G I ++ AVD V+F INE EI +L GESG GKTT K+IL
Sbjct: 3 LLEIKNLTKIFTIGSIFSRTRIVAVDNVNFDINEAEIFTLAGESGCGKTTTAKIILGFEE 62
Query: 61 PTSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFH-MIFDSYF 118
PTSG I+++G+ I + + E + +++QAVFQ+PF++FNPL +VD+ F+ +F+
Sbjct: 63 PTSGEIIYKGRKIDRVHQNEKERRELLKEIQAVFQNPFSTFNPLRKVDRYFYETLFNLGI 122
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
D +++ EE+I + L VG++ E KYP + SGGQLQRI IARALL P LL+ADE
Sbjct: 123 ADT-KKKAEEIIKEKLSAVGISFEEFSEKYPSEFSGGQLQRISIARALLTNPSLLVADEP 181
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
VSM+DAS R+ ++NL + +++YG SVL+ITHDL YY+SD +M+RG IVE+G EK
Sbjct: 182 VSMVDASLRMSIVNLFKDLKEQYGVSVLYITHDLTTAYYVSDRIAVMFRGNIVELGPAEK 241
Query: 239 VFHNPLHPYTKMLLESV--PDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCF 296
V P HPYT++L ESV PD KW+ + E E+ + + +GC++A RCPKA D+C
Sbjct: 242 VLMEPKHPYTQLLRESVPEPDPKKKWDIRIKLSETEQAEYLR-QGCKFAGRCPKAMDICR 300
Query: 297 KIRPTLIEVEKNHWVACHLYQ 317
K P EV+ V C LY+
Sbjct: 301 KEPPPYFEVD-GVQVKCWLYR 320
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 279 bits (706), Expect = 3e-74
Identities = 155/320 (48%), Positives = 213/320 (66%), Gaps = 7/320 (2%)
Query: 2 LLEVQNLTKIF--TSGLIGG-YQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
L+EV+NLTK+F TS ++G +RAVD VSF I + EI+ LVGESG GK+T+GKL++RL
Sbjct: 6 LIEVKNLTKLFPVTSSILGKKISIRAVDNVSFEIKKNEILGLVGESGCGKSTLGKLLVRL 65
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNP-LHQVDKVFHMIFDSY 117
L PTSG +LF+G+DI K K+LK Y + VQ VFQ+P+ SF+P L + + ++
Sbjct: 66 LEPTSGTVLFKGQDIYKLRGKKLKEYR-KSVQMVFQNPYTSFDPRLTLFENIAEPLYTHK 124
Query: 118 FPDLGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
L +EE + + E+VGL P E +YPH+LSGGQLQR IARA+ L+P ++AD
Sbjct: 125 LA-LNKEEALTLAMQYFEDVGLTPPEDFLMRYPHELSGGQLQRASIARAIALEPEFIVAD 183
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E SMLDAS R +LNL+ + R + TS LFITHDL YYI+D +MY G IVE+GE+
Sbjct: 184 EPTSMLDASLRSGILNLIKKLRKELHTSWLFITHDLPSAYYIADRIAVMYLGKIVEIGES 243
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCF 296
++V NPLHPYT+ LLE+ ++ K + + E V++ CR+ PRCP A + C
Sbjct: 244 KEVLKNPLHPYTQALLEANLPIDPDASLKEPKVKGEPKPVFETGYCRFFPRCPYAFEKCK 303
Query: 297 KIRPTLIEVEKNHWVACHLY 316
K P L+EV+K+H+VAC LY
Sbjct: 304 KEEPPLVEVKKDHYVACWLY 323
>pir||A72284 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981747|gb|AAD36271.1|AE001776_7 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 319
Score = 273 bits (690), Expect = 2e-72
Identities = 149/318 (46%), Positives = 208/318 (64%), Gaps = 7/318 (2%)
Query: 3 LEVQNLTKIFTSG-LIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
L ++NLTK+++ G L+ ++ AVD VSF++ EI +L GESG GK+T K+IL P
Sbjct: 5 LILKNLTKVYSIGSLLFRSKITAVDDVSFSLKRAEIFTLAGESGCGKSTTAKMILGFEEP 64
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
TSG I+FEG I + K+ K + RKVQAVFQ+PF SFNPL VD +F +Y
Sbjct: 65 TSGDIIFEGNSIQWWKKR--KKDFLRKVQAVFQNPFESFNPLLTVDDIFFETVMNYGLAN 122
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
R E E++ID+ L+ VGL ++ G+Y +LSGGQLQR IAR+LL P LLIADE VSM
Sbjct: 123 SRNEAEKLIDEKLQLVGLKFEDINGRYQSELSGGQLQRASIARSLLSNPSLLIADEPVSM 182
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
+DAS R+ ++NL + RD+ G SV++ITHDLA YY+SD IM+RG IVE G +KV
Sbjct: 183 VDASLRMSIVNLFAKLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGNIVETGPVDKVLI 242
Query: 242 NPLHPYTKMLLESVPDLN--VKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIR 299
+P HPYT++L ES+PD + KW + I E + + +GC++A RCP K++C + +
Sbjct: 243 DPKHPYTQLLRESIPDPDPEKKWS-REITVSDTEYEEYLKEGCKFAGRCPYVKEICRREK 301
Query: 300 PTLIEVEKNHWVACHLYQ 317
P + V+ V CH+Y+
Sbjct: 302 PDDVLVD-GVLVKCHIYK 318
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 267 bits (676), Expect = 1e-70
Identities = 153/324 (47%), Positives = 207/324 (63%), Gaps = 14/324 (4%)
Query: 2 LLEVQNLTKIF-TSGLIGGYQ-VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
+L+V+NL K F GL+ V+AVDGVSF I +GE LVGESG GKTT G+ ILRL+
Sbjct: 8 VLKVENLKKYFPVRGLLRTVGWVKAVDGVSFEIYKGETFGLVGESGCGKTTTGRTILRLI 67
Query: 60 TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY-F 118
PT GRI+F GKD+ K ELK ++ RK Q +FQDP++S +P V F +I + F
Sbjct: 68 EPTDGRIIFMGKDVTKLKGNELK-WFRRKAQIMFQDPYSSLDPRQTV---FQIIMEPVRF 123
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
+ ++ EE + K LE VGLN + +YPH+ SGGQ QRI +AR L LKP ++ DE
Sbjct: 124 HGIQVDDPEEFVIKLLESVGLNEMHLY-RYPHEFSGGQRQRIALARLLALKPEFIVLDEP 182
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
S LD S + ++LN L E ++K+G + LFI+HDL + Y+SD +MY G +VE+G +K
Sbjct: 183 TSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPADK 242
Query: 239 VFHNPLHPYTKMLLES--VPDLNVKWEFKGIEPE---KEEGKVWKIKGCRYAPRCPKAK- 292
VF NPLHPYT+ML + +PD ++ E K + + V KGCR+ PRCP AK
Sbjct: 243 VFENPLHPYTQMLFSAIPIPDPDIAREMKKKRMKVTGEPPSPVNPPKGCRFHPRCPYAKA 302
Query: 293 DVCFKIRPTLIEVEKNHWVACHLY 316
+C K P L+EVEK+H+VAC LY
Sbjct: 303 GLCDKKEPPLVEVEKDHYVACWLY 326
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 263 bits (664), Expect = 3e-69
Identities = 153/330 (46%), Positives = 200/330 (60%), Gaps = 21/330 (6%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDGVSFTINEGEIVSLVGESGSGKTTIGK 53
+L+V+NL K F S L G Q V+AVDGVSF I + ++ +LVGESG GKTT GK
Sbjct: 5 ILKVENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKTTTGK 64
Query: 54 LILRLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMI 113
LI++LL PT G+I EG+D+ + KE Y RKVQ +FQDPF+S NP ++ V
Sbjct: 65 LIVKLLEPTDGKIYLEGQDVTELRTKEEIKAYRRKVQMIFQDPFSSMNPRFRIYDVLEEP 124
Query: 114 FDSYFPDLGREEREEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+ R EREE+I KALE V + P E G++PH LSGGQ QR+ IARAL+L P
Sbjct: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
++ADE VSMLD S R ++L L+ E ++K G + L+ITHDL+ Y +D +MY G IVE
Sbjct: 185 VVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
Query: 233 MGETEKVFHNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEKEEGKVWKIKGCRYA 285
MG +++ NPLHPYT+ LL +VP D+ + KG P V GCR+
Sbjct: 245 MGPAKEIIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVP----SAVNIPSGCRFH 300
Query: 286 PRCPK-AKDVCFKIRPTLIEVEKNHWVACH 314
PRC K +C +P LIE NHWV CH
Sbjct: 301 PRCIYFKKGLCDVKQPQLIEYSHNHWVECH 330
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 262 bits (663), Expect = 4e-69
Identities = 148/324 (45%), Positives = 207/324 (63%), Gaps = 14/324 (4%)
Query: 2 LLEVQNLTKIFT-SGLIGGYQ-VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
+L+V+NL K F GL V+AVDGVSF I GE LVGESG GKTT G+ ILRL+
Sbjct: 5 VLKVENLKKYFPIRGLFRTIGWVKAVDGVSFEIKRGETFGLVGESGCGKTTTGRTILRLI 64
Query: 60 TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY-F 118
PT G+I+F GKD+ K +ELK ++ RK Q +FQDP++S +P V F +I + F
Sbjct: 65 EPTDGKIIFMGKDVTKLKGEELK-WFRRKAQIMFQDPYSSLDPRQTV---FQIIMEPVKF 120
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
+ ++ EE + + LE VGLN + +YPH+ SGGQ QRI +AR L LKP ++ DE
Sbjct: 121 HGIQVDDPEEFVIRLLESVGLNEMHLY-RYPHEFSGGQRQRIALARLLALKPEFIVLDEP 179
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
S LD S + ++LN L E ++K+G + LFI+HDL + Y+SD +MY G +VE+G ++
Sbjct: 180 TSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKLVEVGPADR 239
Query: 239 VFHNPLHPYTKMLLESV----PDLNVKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAK- 292
+F NPLHPYT+ML ++ PDL + + K ++ E + KGCR+ PRCP AK
Sbjct: 240 IFENPLHPYTQMLFSAIPIPDPDLAREMKKKRMKVTGEPPSPINPPKGCRFHPRCPYAKA 299
Query: 293 DVCFKIRPTLIEVEKNHWVACHLY 316
+C K P ++EVEK+H+VAC LY
Sbjct: 300 GLCDKEEPPMVEVEKDHYVACWLY 323
>pir||E72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980511|gb|AAD35121.1|AE001690_15 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 268
Score = 262 bits (663), Expect = 4e-69
Identities = 139/263 (52%), Positives = 182/263 (68%), Gaps = 2/263 (0%)
Query: 3 LEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPT 62
L V+NLTKIF+ G ++ AV VSF + E EIVSLVGESGSGKTT K+ILRLL PT
Sbjct: 4 LVVKNLTKIFSLGFFSKRRIEAVKNVSFEVKEKEIVSLVGESGSGKTTTAKMILRLLPPT 63
Query: 63 SGRILFEGKDIMKFSK-KELKTYYYRKVQAVFQDPFASFNPLHQVDK-VFHMIFDSYFPD 120
SG I FEGKDI K K +E + RKV AVFQDPFAS+NP + V++ ++ I
Sbjct: 64 SGEIYFEGKDIWKDIKDRESLVEFRRKVHAVFQDPFASYNPFYPVERTLWQAISLLENKP 123
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
++E E+I ++L VG++P +V GKYPHQ+SGGQ QRI+IAR +L+P L++ADE S
Sbjct: 124 SNKKEALELIKESLFRVGIDPKDVLGKYPHQISGGQKQRIMIARCWILRPLLIVADEPTS 183
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
M+DAS+R ++ LL E R++ GTS++FITHDL L YY+SD+ +M G IVE G +KV
Sbjct: 184 MIDASSRGGIIKLLEELREEQGTSIIFITHDLGLAYYVSDNIFVMKNGEIVERGHPDKVV 243
Query: 241 HNPLHPYTKMLLESVPDLNVKWE 263
P H YTK+L+ S+P L K E
Sbjct: 244 LEPTHEYTKLLVGSIPKLYRKLE 266
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 261 bits (660), Expect = 8e-69
Identities = 150/330 (45%), Positives = 199/330 (59%), Gaps = 21/330 (6%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDGVSFTINEGEIVSLVGESGSGKTTIGK 53
+L+V+NL K F + L G Q VRAVDG+SF + + ++ +LVGESG GKTT GK
Sbjct: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
Query: 54 LILRLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMI 113
L+++LL PT G+I EG+D+ + KE Y R+VQ +FQDPF+S NP ++ V
Sbjct: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
Query: 114 FDSYFPDLGREEREEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+ R EREE+I KALE V + P E G++PH LSGGQ QR+ IARAL+L P
Sbjct: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
++ADE VSMLD S R ++L L+ E ++K G + L+ITHDL+ Y +D +MY G IVE
Sbjct: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
Query: 233 MGETEKVFHNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEKEEGKVWKIKGCRYA 285
MG ++V NPLHPYT+ LL +VP D+ + KG P V GCR+
Sbjct: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVP----SAVNIPPGCRFH 300
Query: 286 PRCPK-AKDVCFKIRPTLIEVEKNHWVACH 314
PRC K +C P LIE NHWV CH
Sbjct: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
>pir||E72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980804|gb|AAD35392.1|AE001712_5 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 316
Score = 261 bits (659), Expect = 1e-68
Identities = 138/320 (43%), Positives = 201/320 (62%), Gaps = 7/320 (2%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQ-VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
M + V+NLTKIF G I + + A+D VSF I GEI SL GESG GKTT K++L L
Sbjct: 1 MRVSVRNLTKIFRVGSIFSLKKLVAIDNVSFEIGSGEIFSLAGESGCGKTTTAKILLGLE 60
Query: 60 TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFP 119
PT+G +L++G + F + E+ ++ +KVQ V Q+PF++FNP +V+ +
Sbjct: 61 EPTNGEVLYDGIKLKDFVENEM--HFLKKVQTVQQNPFSTFNPFRKVEDYLFKTVLRFKM 118
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
++E +I++ L VGLN E++G+YP + SGGQLQRI IARALL P L+ADE V
Sbjct: 119 ANTKDEALRLIEEKLSVVGLNFDEIKGRYPSEFSGGQLQRISIARALLTNPSFLVADEPV 178
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
SM+DAS RI ++NL + ++++G S+L+ITHDL+ YY++D IM+RG+IVEMG + +
Sbjct: 179 SMIDASLRISIVNLFRDLKERFGISILYITHDLSTAYYVADKLAIMFRGSIVEMGRAQDI 238
Query: 240 FHNPLHPYTKMLLES--VPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFK 297
P HPYTK+L S VPD +W+ + I E + + KGC++A RCP+ +C +
Sbjct: 239 LDTPFHPYTKLLKSSIPVPDPEYEWD-ENINLSSTEREEFFAKGCKFASRCPEVMSICRE 297
Query: 298 IRPTLIEVEKNHWVACHLYQ 317
P +V V C LY+
Sbjct: 298 SVPPDFDV-NGRVVKCWLYK 316
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 256 bits (648), Expect = 2e-67
Identities = 142/323 (43%), Positives = 201/323 (61%), Gaps = 12/323 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+ +L K F G ++AVDG+S I EGE + LVGESG GK+T+G+ IL+LL P
Sbjct: 13 LLQTVDLKKYFPQGK---RILKAVDGISIEIKEGETLGLVGESGCGKSTLGRTILKLLRP 69
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
G+I FEGKDI + KE+K Y +K+Q +FQDP S NP V ++ + +
Sbjct: 70 DGGKIFFEGKDITNLNDKEMKPYR-KKMQIIFQDPLGSLNPQMTVGRIIEDPLIIH--KI 126
Query: 122 G-REEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
G ++ER + +++ L+ VG+ E +PH+ SGGQ QRI IARAL L P+ ++ DE VS
Sbjct: 127 GTKKERRKRVEELLDMVGIG-REFINSFPHEFSGGQQQRIGIARALALNPKFIVCDEPVS 185
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD S + +++LL E + K G S LFI H+LA+ +IS +MY G IVE G+ +K+F
Sbjct: 186 ALDVSIQAQIIDLLEEIQQKMGISYLFIAHNLAVVEHISHKVAVMYLGKIVEYGDVDKIF 245
Query: 241 HNPLHPYTKMLLESVPDL---NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFK 297
NP+HPYT+ LL+SVP + K F ++ E + KGCR+ RC + K +CF+
Sbjct: 246 LNPIHPYTRALLKSVPKIPWDGQKQRFYSLKGEL-PSPIDLPKGCRFQTRCTEKKAICFE 304
Query: 298 IRPTLIEVEKNHWVACHLYQSSR 320
P L EVEKNH+V+CHL +S R
Sbjct: 305 KEPELTEVEKNHFVSCHLVRSYR 327
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 254 bits (642), Expect = 1e-66
Identities = 142/328 (43%), Positives = 205/328 (62%), Gaps = 22/328 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGY------QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLI 55
LLEV+NLTK F + GG+ +VRAVD +SF++ EGE++ +VGESG GK+T GK I
Sbjct: 5 LLEVKNLTKSFD--INGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAI 62
Query: 56 LRLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFD 115
LRL+ P+SG + F G +I S+ +++ R +Q +FQDP+AS NP H ++K+
Sbjct: 63 LRLIEPSSGEVYFAGTEITALSEGDMRKRR-RDMQIIFQDPYASLNPRHTIEKIIREPLI 121
Query: 116 SYFPDLG-REEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLI 174
+ +G ++E+ E +++ LE VGL+ S+ +YPHQ SGGQ QRI IARAL + P+L+I
Sbjct: 122 VH--QIGTKKEQLERVEELLETVGLS-SDHATRYPHQFSGGQRQRIGIARALAVHPKLVI 178
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
DE VS LD S + +LNL+ + ++ + + +FI HDL++ +ISD +MY G +VEM
Sbjct: 179 CDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMA 238
Query: 235 ETEKVFHNPLHPYTKMLLESVP-----DLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCP 289
+++F NP HPYT+ LL +VP K KG P +GC + RCP
Sbjct: 239 TKDQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPP----EGCAFHTRCP 294
Query: 290 KAKDVCFKIRPTLIEVEKNHWVACHLYQ 317
DVC RP+L E EK H+VACHLY+
Sbjct: 295 DCMDVCKIKRPSLHEKEKGHYVACHLYE 322
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 247 bits (623), Expect = 2e-64
Identities = 142/326 (43%), Positives = 204/326 (62%), Gaps = 17/326 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
+LE++++ K F SGL V+AVDGVSF++ +GE + +VGESG GK+T G+ ++R
Sbjct: 9 ILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIR 68
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
L PT G+ILF+G+DI S+++L+ + +Q VFQDPFAS NP + + F+++
Sbjct: 69 LYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPFNTH 128
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
RE R E +++ L VGL+PS G+YPH+ SGGQ QRI IARAL L P L+IADE
Sbjct: 129 NMYTMRE-RNEKVEELLARVGLHPS-FAGRYPHEFSGGQRQRIGIARALTLNPELIIADE 186
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
VS LD S + V+NL+ E ++++ + LFI+HDL++ +ISD +MY G ++E+
Sbjct: 187 PVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTGKH 246
Query: 238 KVFHNPLHPYTKMLLESVPDL----NVKWE---FKGIEPEKEEGKVWKIKGCRYAPRCPK 290
+++ NPLHPYT+ LL SVP +VK E KG P KGC + RCP
Sbjct: 247 ELYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPP----KGCVFHTRCPV 302
Query: 291 AKDVCFKIRPTLIEVEKNHWVACHLY 316
AK +C + P E +H+VACHLY
Sbjct: 303 AKPICKEQIPEFKEAAPSHFVACHLY 328
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 243 bits (615), Expect = 2e-63
Identities = 143/323 (44%), Positives = 197/323 (60%), Gaps = 17/323 (5%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDGVSFTINEGEIVSLVGESGSGKTTIGK 53
+L V+NL K F L+ G + VRAVDGVSF + +GE++SLVGESG GKTT G+
Sbjct: 1 MLRVENLKKYFPVQKSVLEVLLSGRRDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGR 60
Query: 54 LILRLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMI 113
+I+ L PTSG+I F+ ++I S++E + R +Q VFQDP+AS NP ++ + H++
Sbjct: 61 IIVGLERPTSGKIYFKDREITSLSEEEQRRMK-RHIQMVFQDPYASLNPRMKIGE--HLV 117
Query: 114 FDSYFPDLGR-EEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+ +E EM L+ VGL + + P+QLSGGQ QR+ IARA++LKP
Sbjct: 118 ESLTIHGIAENDEAREMAMSMLDRVGLPGEQFFNRMPYQLSGGQRQRVAIARAMILKPDF 177
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
++ADE VSM+D S R +L+LL FRD+Y S+LFITHDL++ + D +MY G I+E
Sbjct: 178 VVADEPVSMIDVSLRAAILDLLMSFRDEYNLSMLFITHDLSVARIVGDRIAVMYLGKIME 237
Query: 233 MGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKI-KGCRYAPRCPKA 291
+G+T +V HNP HPYT LL SVP K + +E + I GCRY PRCP A
Sbjct: 238 IGKTREVIHNPRHPYTAALLSSVPSFVKKG--RKVEIIGDIANPIDIPSGCRYHPRCPFA 295
Query: 292 KDVCFKIRPTLIEVEKNHWVACH 314
++ C K P L E H ACH
Sbjct: 296 REKCKKEEPELEGGE--HSFACH 316
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 242 bits (610), Expect = 6e-63
Identities = 143/318 (44%), Positives = 187/318 (57%), Gaps = 10/318 (3%)
Query: 1 MLLEVQNLTKIFT--SGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
+L+E L K F S V+AVD V+ I G+ + LVGESGSGKTT G++ILRL
Sbjct: 29 LLVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRL 88
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
PT GRI F+G D+MK + LK + R+ Q +FQDP+ S NP + + +
Sbjct: 89 EEPTGGRIFFDGIDVMKLRGRGLKEFR-RRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHG 147
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
+G + +E I L +VGLN + + +YPH+ SGGQ QRI IAR L LKP ++ DE
Sbjct: 148 IKVG--DLQEYIVSLLYQVGLNETHLY-RYPHEFSGGQRQRIAIARVLALKPEFIVLDEP 204
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
S LD S + +LNLL + + KY + LFI+HDL + Y+SD +MY G IVE GE E+
Sbjct: 205 TSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEE 264
Query: 239 VFHNPLHPYTKMLLES--VPDLNVKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKDVC 295
VF PLHPYTK+LLES VPD V I + E + GCR+ RCP A D C
Sbjct: 265 VFEKPLHPYTKVLLESIPVPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKC 324
Query: 296 FKIRPTLIEVEKNHWVAC 313
+ P L EVE+ HWVAC
Sbjct: 325 LE-EPPLEEVERGHWVAC 341
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 235 bits (592), Expect = 8e-61
Identities = 148/331 (44%), Positives = 201/331 (60%), Gaps = 19/331 (5%)
Query: 2 LLEVQNLTKIF--TSGL---IGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLIL 56
LLEV+ L K F T G + GY VRAVD VSF I +GE ++LVGESG GKTT K IL
Sbjct: 3 LLEVKGLKKYFPLTKGFFKKVVGY-VRAVDDVSFDIKQGETLALVGESGCGKTTTAKSIL 61
Query: 57 RLLTPTSGRILF--EGKD--IMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHM 112
R + PT G ++ +GKD I K S+ ELK Y R +Q +FQ+P+ S NP +V ++
Sbjct: 62 RAIDPTDGDVILHLDGKDVNIAKLSRDELKPYR-RYMQMIFQNPYTSLNPRMKVKEIVGE 120
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
G+E E+ + + L+ VGL P E +YPH SGGQ QRI+IARA+ L+P+L
Sbjct: 121 PLLVNGIAKGKE-LEDRVAELLKAVGLRP-EYMIRYPHAFSGGQRQRIVIARAIALRPKL 178
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
++ DE S LD S R +LNLL + ++++ + LFITHDL++ +ISD +MY G IVE
Sbjct: 179 VVCDEPTSALDVSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKIVE 238
Query: 233 MGETEKVFHNPLHPYTKMLLESV--PDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPK 290
+ TE++F NP HPYT+ LL SV PD +++ E IE E GC + PRCP
Sbjct: 239 LSSTEEIFENPKHPYTETLLRSVPKPDPDLREELVPIEGE-VPNPANPPSGCYFHPRCPY 297
Query: 291 AKDVCFKIRPTL--IEVEKN-HWVACHLYQS 318
AK +C + P + E N H+VACH +S
Sbjct: 298 AKSICKEEYPEFRNLGTEDNPHYVACHFAES 328
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 232 bits (586), Expect = 4e-60
Identities = 130/302 (43%), Positives = 184/302 (60%), Gaps = 23/302 (7%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
VRA+D VS I +GE++ +VGESGSGKTT+GK++ L PT G ++F G ++ + +
Sbjct: 35 VRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTGGNLIFMGMEVNDRNINHV 94
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
+ + + VFQ+P S NP +V + + +E+REE + K LEEVGL+
Sbjct: 95 RKH----IHMVFQNPMTSINPRMKVKDIVR--------EAMKEKREERVKKLLEEVGLDY 142
Query: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
+ V+ KYP +LSGGQ QR+ IARAL +P LI DE S LDAS + +LNLL + + +
Sbjct: 143 NYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNLLVDLQKER 202
Query: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVK 261
+ LFITH++A+ YISD IIMY G IVE G T++V P+HPYT+ LL SVP+L K
Sbjct: 203 KLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPMHPYTQSLLSSVPELGKK 262
Query: 262 WEFKGIEPEKEEGKVWKI----KGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQ 317
E + G+V + GCR+ PRCP A VC + P L+E+ VAC LY+
Sbjct: 263 ------ELKPPSGEVPSLINPPSGCRFNPRCPFAMSVCKEKEPPLVEI-NGRKVACWLYE 315
Query: 318 SS 319
++
Sbjct: 316 TN 317
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 230 bits (581), Expect = 1e-59
Identities = 142/336 (42%), Positives = 194/336 (57%), Gaps = 25/336 (7%)
Query: 2 LLEVQNLTKIFTSGLIG------GYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLI 55
LLEV+NL K F G GY ++AVDG+SF I EGE + LVGESG GKTT KLI
Sbjct: 3 LLEVKNLKKYFPIIKRGFRRKVVGY-LKAVDGISFHIEEGETLGLVGESGCGKTTTAKLI 61
Query: 56 LRLLTPTSGRILF----EGKDIMKFSKKELKTYYYRK-VQAVFQDPFASFNPLHQVDKVF 110
+R + PT G I+ E DI K S+KEL+ R+ +Q +FQDP++S NP V +
Sbjct: 62 MRGIEPTEGEIVLNMDGEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTVRDII 121
Query: 111 HMIFDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKP 170
G+EE + ++ L VGL P E +YPH SGGQ QRI IARA+ LKP
Sbjct: 122 AEPLVVNGVIKGKEEIDAIVSDLLRAVGLRP-EYMQRYPHAFSGGQRQRIAIARAIALKP 180
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
+L++ DE S LD S + ++NLL + + +Y + LFI+HDL + +I++ +MY G I
Sbjct: 181 KLVLCDEPTSALDVSVQAQIINLLKDLQKEYNLTYLFISHDLGVVEHITNRVAVMYVGRI 240
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFK-----GIEPEKEEGKVWKIKGCRYA 285
VE+ ETE++F +P HPYT+ LL +VP + K + K G P+ GC +
Sbjct: 241 VELAETEELFSSPKHPYTEALLSAVPKPDPKRKRKKAQLTGEVPDPSNPP----SGCYFH 296
Query: 286 PRCPKAKDVCFKIRPTLIEV---EKNHWVACHLYQS 318
PRCP AK +C ++ P L V + H VACH S
Sbjct: 297 PRCPYAKAICKEVYPDLRNVGTDQNPHLVACHFADS 332
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 229 bits (579), Expect = 3e-59
Identities = 122/307 (39%), Positives = 195/307 (62%), Gaps = 21/307 (6%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTS---GRILFEGKDIMKFSK 78
V+A+DGVSF I +GEI++L+GE+G GK+ K I+RLL + G+I+++G+++++ +
Sbjct: 23 VKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPRNAIVKGKIIYKGRNLLELPE 82
Query: 79 KELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVG 138
+E++ +++ +FQDP S NP+ ++ +F + + +E++ K L+ V
Sbjct: 83 REMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKLPVVGSILDEIV-KLLKMVK 141
Query: 139 LNPSEVRGK-YPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEF 197
+ E R K YP +LSGG QR++IA L KP LLIADE + LD + + ++NL+ E
Sbjct: 142 IPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPTTALDVTIQAQIMNLMLEL 201
Query: 198 RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPD 257
R+K+ TS+L ITH+ + ++D ++MY G +VE+ E++F NPLHPYT+ LL ++P
Sbjct: 202 REKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEIFDNPLHPYTQGLLRALP- 260
Query: 258 LNVKWEFKGIEPEKE----EGKVWKI----KGCRYAPRCPKAKDVCFKIRPTLIEVEKNH 309
+G + E+E G+V + KGCR+ PRC KAK++C K +P LIEVEK H
Sbjct: 261 -------RGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEKPKLIEVEKEH 313
Query: 310 WVACHLY 316
+VACHLY
Sbjct: 314 YVACHLY 320
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 229 bits (579), Expect = 3e-59
Identities = 135/320 (42%), Positives = 192/320 (59%), Gaps = 14/320 (4%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
LLEV NL K F GL+ V+AV+ ++F + +GE+V L+GESGSGKTT G+ +LR
Sbjct: 27 LLEVNNLQKYFPIRGGLMSRVVANVKAVNDITFRVGKGEVVGLIGESGSGKTTAGRALLR 86
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFD 115
L+ PT G+++F G DI K K +++ Y R++Q +FQDPFAS NP V + M
Sbjct: 87 LIEPTGGQVIFNGTDITKLGKSQMRDYR-REMQIIFQDPFASLNPRMTVSDILGEAMQIH 145
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ P R +R I + L+ VGL P + G+YPH+ SGGQ QRI IARAL + P ++A
Sbjct: 146 NLHPGKARVDR---IAELLQRVGLRPEHM-GRYPHEFSGGQRQRIGIARALAVDPSFIVA 201
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE VS LD S + V+NL+ + +++ G +VLFI HDL + YI D I+MY G I+E+
Sbjct: 202 DEPVSALDVSIQAQVVNLIQDLQEELGLTVLFIAHDLHVVEYICDRMIVMYLGRIMEIAP 261
Query: 236 TEKVFHNPLHPYTKMLLES--VPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
+ ++ NP HPYT+ LL + VPD +K + +E + + GC + RC A
Sbjct: 262 SRELNRNPKHPYTEALLSASPVPDPTIKRQRIILEGD-IPSPINPPSGCVFRTRCRYAIA 320
Query: 294 VCFKIRPTLIEVEKNHWVAC 313
C I P L EV +H+ AC
Sbjct: 321 DCANIVPELREVSPDHFKAC 340
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 229 bits (578), Expect = 3e-59
Identities = 132/320 (41%), Positives = 196/320 (61%), Gaps = 10/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQ-----VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLIL 56
LL+V++LTK + G ++ VRAV+ VSFT+ GE + +VGESG GK+T+ +L++
Sbjct: 5 LLKVESLTKHYPIEA-GWFKTNVPVVRAVEDVSFTVQAGETLCVVGESGCGKSTLARLLM 63
Query: 57 RLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
RL+ PTSGR+L EG DI K EL+ + R++Q VFQDP++S NP ++ ++
Sbjct: 64 RLIDPTSGRVLVEGTDIAGLRKNELRAWR-RRMQMVFQDPYSSLNPRLTAGQIITEPVEN 122
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
F L R +R+E+ L +VG++P E+ +YP ++SGGQ QR+ IARAL LKP L+IAD
Sbjct: 123 -FECLSRRQRQELATDLLRKVGMSP-EMASRYPSEMSGGQRQRLGIARALALKPSLIIAD 180
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
EAVS LD S + +LNLL + + + G +++FI+HDLA+ +I +MY G IVE+
Sbjct: 181 EAVSALDVSVQAQILNLLMDLQQETGIALIFISHDLAVVEHIGHRVAVMYLGRIVELSPR 240
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKDVC 295
+ +F P+HPYT+ L+ + P + + E E V GC + PRCP A D C
Sbjct: 241 DALFAKPVHPYTEALIAAAPVPDPARARLEVPLEGEVPSPVNPPSGCAFHPRCPLAVDRC 300
Query: 296 FKIRPTLIEVEKNHWVACHL 315
P L+ + VACH+
Sbjct: 301 RAEVPPLVPMPDGRAVACHV 320
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 228 bits (576), Expect = 6e-59
Identities = 141/335 (42%), Positives = 196/335 (58%), Gaps = 23/335 (6%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
LL+V+ L + F G++G V+AVD VSFTI EGE VS+VGESG GK+T G+ ILR
Sbjct: 5 LLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAILR 64
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFD 115
L PT G+I F+G+D++ +K+E++ + +Q +FQDP+AS NP + +V M
Sbjct: 65 LDEPTDGKIEFQGEDLLSLNKREMRKKR-KDLQIIFQDPYASINPRQTIRQVLEEAMEIQ 123
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
P R++R E I + ++ VGL S ++PH+ SGGQ QRI IARAL + P+L++
Sbjct: 124 KVVP---RDKRGERIRELMDTVGLG-SHQADRFPHEFSGGQRQRIGIARALSVNPKLIVC 179
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DEAVS LD S + V+NLL + ++ + LFI+HDL + +ISD I+MY G IVE+ +
Sbjct: 180 DEAVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIAD 239
Query: 236 TEKVFHNPLHPYTKMLLES--VPDLNVKWE---FKGIEPEKEEGKVWKIKGCRYAPRCPK 290
+F NP HPYTK LL + VPD K E KG P + GCR+ RCP
Sbjct: 240 KTSLFENPQHPYTKALLSAIPVPDPEKKKERIILKGDVPSPIDPP----NGCRFHTRCPF 295
Query: 291 AKDVCFKIRP---TLIEVEKNHWVACHLYQSSREG 322
A D C P T ++ H ACH + G
Sbjct: 296 ATDKCRTETPELRTADYMKDGHLAACHYMEEIESG 330
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 227 bits (573), Expect = 1e-58
Identities = 130/328 (39%), Positives = 197/328 (59%), Gaps = 16/328 (4%)
Query: 1 MLLEVQNLTKIFT--SGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
+L+E +NL K F S + +RA++ VSF + + +S+VGESGSGK+T K+I ++
Sbjct: 8 LLVEGKNLVKDFAINSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKM 67
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH------M 112
PTSG I ++G+DI ++ +Y VQ V+QDPF S NP H + FH +
Sbjct: 68 YAPTSGVIEYKGRDIQDIVSRDDLMHYREGVQMVWQDPFGSLNPTHTI---FHHIARPLL 124
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGLNPSEVRG-KYPHQLSGGQLQRILIARALLLKPR 171
I P ++E EE + + LE+VGL P + KYPHQLSGGQ QR+ +AR + +
Sbjct: 125 IHKKVTPG-NKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGAE 183
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIV 231
+++ADE SMLD S R VLNL+ E + + S+L+ITHD+A YI++ +MY G +V
Sbjct: 184 VVLADEPTSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVGHMV 243
Query: 232 EMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVW--KIKGCRYAPRCP 289
E G+T+++ H+P HPYTK+L+ +VPD K + +E K E +W GC +A RC
Sbjct: 244 EWGDTDEIIHDPQHPYTKLLVSAVPDPK-KSIHEKLEGNKGEIPLWTPNSVGCPFAGRCL 302
Query: 290 KAKDVCFKIRPTLIEVEKNHWVACHLYQ 317
A C + P + ++ NH+V C+L++
Sbjct: 303 YASAKCREALPEVTQLSDNHFVRCYLFE 330
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 222 bits (561), Expect = 3e-57
Identities = 131/323 (40%), Positives = 198/323 (60%), Gaps = 19/323 (5%)
Query: 1 MLLEVQNLTKIFTS--GLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
MLL+++NLT IF + G+ VRAVD VS ++ +GE +S+VGESG GK+T+ ++RL
Sbjct: 2 MLLDIENLTTIFRTRRGV-----VRAVDNVSMSVEKGEFISIVGESGCGKSTLAHSVMRL 56
Query: 59 LTP----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMI 113
+ + G+I+F+G D++ +E++ K+ VFQDP S +PL ++ D++ I
Sbjct: 57 IDYPGEISGGKIIFDGVDLLSLGDEEMREIRGSKIGMVFQDPMTSLDPLEKIGDQISETI 116
Query: 114 FDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
+ D+ ++E +M + LE+VGL P V YPHQLSGGQ QR++IA A+ L P+LL
Sbjct: 117 MEHM--DVTKKEAWQMAREMLEKVGLQPERV-DSYPHQLSGGQRQRVMIAMAISLNPKLL 173
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
IADE + LD + +++LL + + + G +V+ ITHD AL SD +MY G +VE+
Sbjct: 174 IADEPTTALDVIVQEKIMDLLEDMK-REGRAVMLITHDFALAAERSDRIAVMYAGWLVEL 232
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
G+ EK+ + PLHPYTK L++SVPD+ + E K + P + +GCR+ PRC +A
Sbjct: 233 GKAEKLTNEPLHPYTKGLIQSVPDVWMDKEIKPL-PGFPPDLINPPEGCRFRPRCSEASK 291
Query: 294 VCFKIRPTLIEVEKNHWVACHLY 316
C K P EV+ V C LY
Sbjct: 292 RCMK-EPPEFEVD-GRVVKCWLY 312
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 222 bits (561), Expect = 3e-57
Identities = 135/331 (40%), Positives = 190/331 (56%), Gaps = 40/331 (12%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGK---------- 71
V+AVDGVSF+I GE+ LVGESG GKTT GK ILRL+ T GR+ F+ K
Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106
Query: 72 ----------DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDSYFP 119
D++ +++ K R++Q V+QDP+ S NP + ++ ++ S
Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLR-RELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIG- 164
Query: 120 DLGREEREEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
EREEM+ + LE V L P S+ +YPHQLSGGQ QR+ IARA +L P L++ADE
Sbjct: 165 --NAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEP 222
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
VSMLD S R ++L LL FR+K GTS+LFITHDLA+ YI D +MY G IVE G+ +
Sbjct: 223 VSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARR 282
Query: 239 VFHNPLHPYTKMLLESV--PDLNVKWEFKGIEPEKEEGKVWKI-KGCRYAPRC------- 288
+ P+HPYTK L+ ++ PD + + + + + + E I GCR+ PRC
Sbjct: 283 IIERPIHPYTKALVAAIPEPDPSNRKKLREVPIKGEIPSAAAIPPGCRFHPRCVEYEQDM 342
Query: 289 PKAKDVCFKIRPTL---IEVEKNHWVACHLY 316
+ +++C P L E E++ V+C Y
Sbjct: 343 DRLREMCPVKEPPLKRPTEGEEDRRVSCWRY 373
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 222 bits (560), Expect = 4e-57
Identities = 134/326 (41%), Positives = 199/326 (60%), Gaps = 24/326 (7%)
Query: 1 MLLEVQNLTKIFTSG-----LIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLI 55
++L+V+NL + FT+G +V AV+ VSF + + + + LVGESG GK+T + I
Sbjct: 7 IILKVENLMQTFTTGEDFLFWKNKQKVNAVNNVSFEVEKNKTLGLVGESGCGKSTTLRSI 66
Query: 56 LRLLTPTSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIF 114
++L TPTSG I F GK+I K SKKEL KT + +Q VFQDP S +P + ++
Sbjct: 67 MQLYTPTSGNIYFNGKNITKLSKKELLKTK--KDMQMVFQDPHTSLDPRMTIKEIIAEPL 124
Query: 115 DSYFPDL----GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKP 170
+ Y + ++E E+ +++ + VGL+ S + +YPH+ SGGQ QRI IARAL L P
Sbjct: 125 EIYNENKILPKTKQEIEQRVNELTDIVGLHKSMLT-RYPHEFSGGQRQRIGIARALALNP 183
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
+LL+ DEAVS LD S R +LNLL + ++ S LFI+HDLA+ Y+SD +MY G I
Sbjct: 184 KLLLLDEAVSALDVSIRAQILNLLKALQKEFNLSYLFISHDLAVVKYMSDKIAVMYLGVI 243
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPK 290
+E+ E +F NP+HPYTKML+ S+P++N PEK + K K+ A +
Sbjct: 244 LELAPRETLFSNPIHPYTKMLIASIPEIN---------PEKRKNKNIKLDEQTLAN--IR 292
Query: 291 AKDVCFKIRPTLIEVEKNHWVACHLY 316
+ ++ P L EVEK+H+V+ +L+
Sbjct: 293 KIHLSTQVHPKLEEVEKDHFVSKYLF 318
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 220 bits (555), Expect = 2e-56
Identities = 128/321 (39%), Positives = 190/321 (58%), Gaps = 10/321 (3%)
Query: 1 MLLEVQNLTKIF--TSGLIGGYQ--VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLIL 56
+LLE + LTK F + G + +RAVDGV TI GE + +VGESG GK+T+G+L++
Sbjct: 4 VLLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLM 63
Query: 57 RLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
RLL PT G + F G D + + L+ +Q +FQDPF+S NP V ++ +
Sbjct: 64 RLLEPTRGTLSFAGSDFLALKGEALRQKR-SDIQIIFQDPFSSLNPRMTVREIIGEPLKT 122
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+ G + + +D+ ++ VGL+ S + +YPH+ SGGQ QRI IARA+ LKP+L+I D
Sbjct: 123 HRLAKGNDLIKR-VDELMDAVGLDRSYAK-RYPHEFSGGQRQRIGIARAIALKPKLIICD 180
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E VS LD S + +LNL+ + ++ + LFI H L +ISD +MY G +VE+
Sbjct: 181 EPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASK 240
Query: 237 EKVFHNPLHPYTKMLLESV--PDLNVKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKD 293
+ +F P+HPY++ L+++V PD V+ + K + E + V GCR+ PRCP A+D
Sbjct: 241 DALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQD 300
Query: 294 VCFKIRPTLIEVEKNHWVACH 314
C P L E E H+VACH
Sbjct: 301 KCTVQEPALTEKEPGHFVACH 321
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 220 bits (555), Expect = 2e-56
Identities = 129/335 (38%), Positives = 191/335 (56%), Gaps = 18/335 (5%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQV---RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLIL 56
+LEV+ L K + TSG++ QV +AVDGV F + GE + +VGESG GK+T+ K+++
Sbjct: 8 ILEVRGLVKHYPLTSGILFKKQVGAVKAVDGVDFRLARGETLGIVGESGCGKSTVAKMLV 67
Query: 57 RLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
L PT+G I ++G+DI + S + LK+ R +Q VFQDP+ S NP V + +D
Sbjct: 68 NLERPTAGEIRYKGEDITRLSGRALKSVR-RNIQMVFQDPYTSLNPRMTVGDIIGEAYDI 126
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+ + +R + L+ VGLNP + +YPHQ SGGQ QRI IAR L L+P +++AD
Sbjct: 127 HPEVAPKGDRRRRVQDLLDVVGLNPEYIN-RYPHQFSGGQRQRIGIARGLALRPEIIVAD 185
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E VS LD S + V+NL+ +D++ S +FI HDL++ +ISD +MY G IVE G
Sbjct: 186 EPVSALDVSVQAQVINLMARLQDEFDLSYIFIAHDLSIVRHISDRVGVMYLGRIVETGRD 245
Query: 237 EKVFHNPLHPYTKMLLES--VPDLNVKWEFKGIEPEKEEGKVWKI-KGCRYAPRCPKAKD 293
E+++ +P HPYT+ LL + VPD + + I + I GCR+ RC KA++
Sbjct: 246 EEIYDHPTHPYTQALLSAVPVPDPEAREHRERIILSGDVPSPTNIPSGCRFRTRCWKARE 305
Query: 294 VCFKIRPTL--------IEVEKNHWVACHLYQSSR 320
C P L + H ACH + +
Sbjct: 306 RCALEVPALAVPAEFRSVSGPAAHDSACHFAEEKQ 340
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 220 bits (555), Expect = 2e-56
Identities = 118/296 (39%), Positives = 183/296 (60%), Gaps = 8/296 (2%)
Query: 21 QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKE 80
QV+A+DGVSF + G+ +++VGESG GK+T+G+L+ + PT G + ++G + ++ + E
Sbjct: 33 QVKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLTMIEEPTKGELYYKGHNFLE-NDSE 91
Query: 81 LKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDSYFPDLGREEREEMIDKALEEVG 138
K +K+Q VFQ+P+AS NP ++ + +I ++ L +ER E + +E+VG
Sbjct: 92 TKALRRKKIQIVFQNPYASLNPRKKIGSILEEPLIINT---KLSAKERREKVLSMMEKVG 148
Query: 139 LNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFR 198
L +E +YPH SGGQ QRI IAR L+L P +++ADE VS LD S R VLNL+ + +
Sbjct: 149 LR-AEFYDRYPHMFSGGQRQRIAIARGLMLDPDVVVADEPVSALDVSVRAQVLNLMMDLQ 207
Query: 199 DKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDL 258
D+ G S +FI+HDL++ +I+D ++MY G +E G TE++F NP HPYTK LL + P L
Sbjct: 208 DELGLSYVFISHDLSVVEHIADEVMVMYLGRCIEKGTTEQIFSNPQHPYTKALLSATPRL 267
Query: 259 NVKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
+ + I+ E + KGC + PRC KA + C + +P L + +AC
Sbjct: 268 SPNLRRERIKLTGELPSPINPPKGCAFNPRCWKATEKCRENQPHLEQHTDGKLIAC 323
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 220 bits (554), Expect = 2e-56
Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 15/319 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L++Q+L K+ L G VRAVDGVS ++N+GE +S+VGESGSGK+T+ I RL+ P
Sbjct: 7 VLDIQDL-KVHYYTLTG--IVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMP 63
Query: 62 ----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDS 116
GRIL+ G D++ + +EL+ Y R++ VFQDP A +P V ++ + +
Sbjct: 64 PGRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEH 123
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
G E E M ALE VG+ P + YPHQLSGGQ QR+ IA A+ L+P++LIAD
Sbjct: 124 GLASSG-SEAESMAGDALELVGI-PRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIAD 181
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E + LD + +++L+ + +++ G +V+ +THD+ L SD +MY G +VE+G
Sbjct: 182 EPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPA 241
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWK--IKGCRYAPRCPKAKDV 294
E V NP+HPYT+ML++SVPD WE + ++P + GCR+ PRCP + +
Sbjct: 242 EDVVSNPIHPYTEMLIKSVPD---PWEDREVKPIPGSPPDLRNPPPGCRFHPRCPLRQPL 298
Query: 295 CFKIRPTLIEVEKNHWVAC 313
C RP+L V+ +C
Sbjct: 299 CTNTRPSLRMVDGGRGHSC 317
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 219 bits (553), Expect = 3e-56
Identities = 124/300 (41%), Positives = 182/300 (60%), Gaps = 22/300 (7%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
VRA+D VS +I +G ++ +VGESGSGK+T+GK+++ L TPT G + F+G + K ++
Sbjct: 33 VRALDDVSISIMDGNVIGVVGESGSGKSTMGKVMVTLETPTDGELYFKGTRVTKSEYPKI 92
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
+ ++V VFQ+P S NP +V D LG + E I + + +VGL+
Sbjct: 93 R----KQVDMVFQNPATSLNPKMKVK-------DIVSEPLGHFD-EGAIKEVILKVGLSY 140
Query: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
EV+ K +LSGGQ+QR+ IARAL+ KP LL+ DE S LD S + VLNLL + + +Y
Sbjct: 141 DEVKDKQSRELSGGQVQRVAIARALMKKPELLVLDEPTSALDESIQAQVLNLLVDLQTEY 200
Query: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVK 261
+ +FITH++ + YISD +++Y G IVE G T +V PLHPYT++LL SVP ++VK
Sbjct: 201 KMTYIFITHNILVAKYISDYIVVLYAGKIVEYGPTSEVLSKPLHPYTQLLLSSVPTVDVK 260
Query: 262 WEFKGIEPEKEEGKVWKI----KGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQ 317
+ + G V + +GCR+ PRCP + C K P LI +N+ VAC LY+
Sbjct: 261 ------DVKPPVGDVPSLINLPQGCRFNPRCPFVMEKCRKEEPPLISQGQNYQVACWLYE 314
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 219 bits (553), Expect = 3e-56
Identities = 133/327 (40%), Positives = 186/327 (56%), Gaps = 23/327 (7%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
LL+V L K F GL+ VRAVDG+ F + GE + +VGESG GK+T+G+LI R
Sbjct: 39 LLKVTGLQKHFPIRKGLLQRQVGAVRAVDGIDFEVRSGETLGVVGESGCGKSTMGRLITR 98
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIF--D 115
LL PT+G++ F+GKDI ++ R VQ +FQDP++S NP H + + F
Sbjct: 99 LLEPTAGKVEFQGKDITHLGVGGMRPLR-RDVQMIFQDPYSSLNPRHTIGTIVSAPFKLQ 157
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
P+ G ++ + + L VGLNP E +YPH+ SGGQ QRI IARAL L PRL++A
Sbjct: 158 GVQPEGGVKKE---VQRLLSVVGLNP-EHYNRYPHEFSGGQRQRIGIARALALNPRLVVA 213
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE VS LD S + V+NLL + + + G + + I HDL++ ++SD +MY G I+E+ +
Sbjct: 214 DEPVSALDVSIQAQVVNLLDDLQQELGLTYVIIAHDLSVVRHVSDRIAVMYLGKIMELAD 273
Query: 236 TEKVFHNPLHPYTKMLLESVP-----DLNVKWE---FKGIEPEKEEGKVWKIKGCRYAPR 287
+ ++ P+HPYTK L+ +VP K E KG P + GCR+ R
Sbjct: 274 RDLLYKTPMHPYTKALMSAVPIPDPARRGAKSERILLKGDVP----SPIAPPSGCRFHTR 329
Query: 288 CPKAKDVCFKIRPTLIEVEKNHWVACH 314
C KA VC P L E+ VACH
Sbjct: 330 CWKATQVCTTTEPPLKELRPGQQVACH 356
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 219 bits (552), Expect = 4e-56
Identities = 116/320 (36%), Positives = 190/320 (59%), Gaps = 15/320 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+LE++ LT + + V A+ VSF++ +G IV ++GESGSGK+T+G ILR L
Sbjct: 4 ILEIEGLTVKYKTRY---GTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPE 60
Query: 62 T----SGRILFEGKDIMKFSKKELKTYY-YRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
SG+I+FEG D+++ ++ + + ++K+ +FQ+ +F+P+H++ +
Sbjct: 61 NARIESGKIMFEGSDLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQDQLLDVARK 120
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
FP+ R E E+I + L ++ S ++ KYPH+LSGGQ QR+ I ALL P ++IAD
Sbjct: 121 CFPNKSRNELLEIIKEKLRIANIDESVLK-KYPHELSGGQRQRVAIGMALLADPEIVIAD 179
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E + LD T+ +LN L E + G ++L ITHD+++ +S +++Y G ++E G+
Sbjct: 180 EPTTGLDVVTQYQILNRLKEIQKDLGITLLLITHDVSVVAALSTDVLVLYAGKVLEYGDI 239
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVK--WEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
++VF N HPYT +LL S P++ + +E G P+ GC + PRCP A D+
Sbjct: 240 KRVFKNSHHPYTYLLLRSYPEMGKEKLYEIPGSPPDLRNPP----SGCVFHPRCPYATDL 295
Query: 295 CFKIRPTLIEVEKNHWVACH 314
C K P L+E+E+ H+ ACH
Sbjct: 296 CRKEEPKLVEIEEGHFSACH 315
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 218 bits (549), Expect = 8e-56
Identities = 131/318 (41%), Positives = 198/318 (62%), Gaps = 18/318 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LL +QNLTK++ +G + A+ VS +I +G+ +++VGESGSGK+T+GK+ILRL
Sbjct: 3 LLSIQNLTKVYKVPAGFLRKKNFFALKEVSLSIKQGDFLAIVGESGSGKSTLGKIILRLE 62
Query: 60 TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFP 119
PT G++ F+GKDI K+ Y RKV AVFQDP +S NP +V+++ +
Sbjct: 63 KPTKGKVSFKGKDIFSMGKE-----YTRKVSAVFQDPRSSLNPRMKVEEILEEPLIVHRV 117
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
GR+ER + K L+ V L+ E+ K P Q+SGGQ QR+ IARAL+L+P L++ADE
Sbjct: 118 K-GRKER---VLKVLQRVRLS-EELLEKRPLQISGGQAQRVAIARALILEPELIVADEPT 172
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
+ LD S + ++L L E K G S F+THD+ + +++ ++Y G ++E+G+ E+V
Sbjct: 173 ASLDVSVQEEILELFKELNSK-GISFFFVTHDIRVVEKVANMVGVIYAGILMELGKKEEV 231
Query: 240 FHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFK-I 298
NPLHPYTK LLE+VP + K + K ++ +EE +GC + PRCP+A + C K I
Sbjct: 232 LKNPLHPYTKFLLENVPVRHPK-DRKPLKYLQEEEVSIPEEGCPFYPRCPEAMEECKKFI 290
Query: 299 RPTLIEVEKNHWVACHLY 316
R + + +AC+LY
Sbjct: 291 RRSEV---NGRLLACNLY 305
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 218 bits (549), Expect = 8e-56
Identities = 121/324 (37%), Positives = 190/324 (58%), Gaps = 8/324 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL-- 59
+LE++N++ + +G V AV+ VSF + +GE + LVGESG GK+T+G I+RLL
Sbjct: 3 VLELKNVSVRYKTG---EKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRLLPK 59
Query: 60 -TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
T G I EG DI S +E++ KV +FQDP S NP+ +++ F + ++
Sbjct: 60 GTKIDGSIKIEGIDISSLSDEEMRQIRGSKVAMIFQDPMTSLNPILRIEDHFVEMILTHR 119
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
P+L +E+ E+ KALE+VG+N + ++ YP Q SGG QR++IA +++L P +LIADE
Sbjct: 120 PELSKEDARELAAKALEDVGINRNRLK-DYPFQFSGGMRQRVMIALSIVLNPAVLIADEP 178
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
+ LD + ++ LL + ++ T+++ ITHD+ L +D +MY G +VE+ E+
Sbjct: 179 TTSLDVIVQAQIMELLEKLTKEHRTAMILITHDMGLVAEAADRIGVMYAGHLVELASKER 238
Query: 239 VFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKI 298
+F NPLHPYT LL S+P+ +V + P +GCR+APRC KA +C++
Sbjct: 239 IFTNPLHPYTVGLLRSIPNTDVNDKELRYIPGSPPDLSNPPEGCRFAPRCEKAMKICWEK 298
Query: 299 RPTLIEVEKNHWVACHLYQSSREG 322
P E++ V C LY + G
Sbjct: 299 EPPEFEIDGTR-VKCWLYGGDQNG 321
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 217 bits (547), Expect = 1e-55
Identities = 125/336 (37%), Positives = 202/336 (59%), Gaps = 34/336 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
MLL +++L ++ + + G Y+V +D ++ I++GE+VSLVGES SGK+T+G++I R+L
Sbjct: 1 MLLSIKHLN-VWYNTVAGKYKV--IDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLP 57
Query: 61 P---TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH---MIF 114
P TSG ++ +G D++K S+KE+ V +FQ+P S NP+ ++++ I
Sbjct: 58 PVGITSGEVVLDGVDVLKLSEKEMTKIRGTTVFMIFQNPLNSLNPVKRIEEQLMEALAIR 117
Query: 115 DSYFP-DLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+S + EE + + KALE + L +P ++ +YPH+LSGGQ+QR++I ALLL+P+L
Sbjct: 118 NSRMNIQMTFEEARKEVIKALESLRLPDPEKILIRYPHELSGGQVQRVVICMALLLRPKL 177
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LIADE + LD + + V+ LL + +++FITHD+ L Y +SD ++ Y G ++E
Sbjct: 178 LIADEPTTALDVTIQAQVVKLLKDLNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRVME 237
Query: 233 MGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKI-----------KG 281
G+T ++ NPLHPYT LL S+P K GK++ I KG
Sbjct: 238 QGQTVEIVKNPLHPYTSGLLASIP-----------SSPKHSGKLYSIPGYPPSYLSLPKG 286
Query: 282 CRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQ 317
C++APRC A + CF+ P+ I+ + N + C LY+
Sbjct: 287 CKFAPRCRFAFERCFEEEPSYIK-KDNRLIRCWLYE 321
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 217 bits (547), Expect = 1e-55
Identities = 119/296 (40%), Positives = 180/296 (60%), Gaps = 8/296 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
++AVDGV+ + EGE + +VGESG GK+T + I+ L+ T G++ + GKD++ E
Sbjct: 37 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGKVAWLGKDLLGMKADEW 96
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
+ +Q +FQDP AS NP + ++ +Y P L R++ + + + +VGL P
Sbjct: 97 REVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQDVRDRVKAMMLKVGLLP 155
Query: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
+ + +YPH+ SGGQ QRI IARAL+L+P+L+I D+AVS LD S + V+NLL + + +
Sbjct: 156 NLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDDAVSALDVSIQAQVVNLLQQLQREM 214
Query: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESV----PD 257
G S++FI HDLA+ +ISD ++MY G VE+G ++V+HNPLHPYTK L+ +V PD
Sbjct: 215 GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPD 274
Query: 258 LNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
L + + +E E + GC + RCP A C + RP L E H V+C
Sbjct: 275 LERNKKIQLLEGEL-PSPINPPSGCVFRTRCPIAGPECAQTRPVL-EGSFRHAVSC 328
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 217 bits (546), Expect = 2e-55
Identities = 124/320 (38%), Positives = 191/320 (58%), Gaps = 12/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+LEV+NL + + V+AVD V+F + +GE++ L GESG GK++IG ++ + P
Sbjct: 5 ILEVKNLKMYYFTSR---GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
Query: 62 ----TSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
SG I +G++I+ + L K ++K+ +FQ + NP++ V + MI
Sbjct: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVG--YQMIEPL 119
Query: 117 -YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
Y + RE+ + K LE VGL+P E+ +YPH+LSGG QR++IA AL+L+P ++IA
Sbjct: 120 IYHRGMSREDALDRAMKYLELVGLDP-EIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + ++NL+ + K G S++FITHDL++ ISD IMY G IVE+G
Sbjct: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
+EKV++ P HPYT+ LL ++P L+ E P + GCR+ PRCP A D C
Sbjct: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
Query: 296 FKIRPTLIEVEKNHWVACHL 315
+ P ++EV+K+H+ AC L
Sbjct: 299 KEEEPKMVEVDKDHYAACWL 318
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 216 bits (545), Expect = 2e-55
Identities = 126/315 (40%), Positives = 183/315 (58%), Gaps = 21/315 (6%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRIL--FEGKDIM---KF 76
VRAVD ++F I +GEI+ +VGESGSGKTT+GK +L L +PT+G+I F D+
Sbjct: 377 VRAVDDITFAIRKGEILGIVGESGSGKTTLGKTLLGLYSPTAGKITYSFSNGDVEITPTT 436
Query: 77 SKKELKTYYYRK-VQAVFQDPFASFNP-LHQVDKVFHMIFDSYFPDLGREEREE------ 128
S+ EL RK Q +FQDP+ S NP L D V I + G +E+++
Sbjct: 437 SESELMRSSIRKETQMIFQDPYDSLNPKLTVYDIVAEPIIARRYHK-GNKEKDDIYKNPL 495
Query: 129 ----MIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLD 183
++ AL + L P E +YPH+LSGG+ QR+ ARAL+L +IADE SMLD
Sbjct: 496 EILNLVKIALAKASLKPVENYLFRYPHELSGGERQRVATARALVLNSEFIIADEPTSMLD 555
Query: 184 ASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNP 243
S R +N++ E R K G ++++I+HD+A YY+SD ++MY G VEMG + + + P
Sbjct: 556 VSIRASFMNMMKEIRSKEGITMVYISHDIASTYYMSDKILVMYLGKAVEMGSADAIINEP 615
Query: 244 LHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKI-KGCRYAPRCPKAKDVCFKIRPTL 302
LHPYTK L++++P W+ I+ E G + KGCR+ RC +D+C K P
Sbjct: 616 LHPYTKALIKAIPTPFSDWDPSKIDIIGEIGNAINVPKGCRFYNRCIYRQDIC-KDNPPT 674
Query: 303 IEVEKNHWVACHLYQ 317
++ ++HW CH Q
Sbjct: 675 VKGAEDHWYLCHFSQ 689
Score = 178 bits (447), Expect = 8e-44
Identities = 109/319 (34%), Positives = 174/319 (54%), Gaps = 22/319 (6%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTS---GRILFEG-------- 70
V A+ VSF + +G + +VGESGSGK+T+ I+ LL + G I +G
Sbjct: 15 VHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSLLPENAMMRGSIYLKGTEYISDVI 74
Query: 71 ------KDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGRE 124
K K + L+ ++ + VFQ SFNP++ + + +F + L +
Sbjct: 75 INNAKKKKARKILEDNLRNIRWKNISMVFQGAMNSFNPVYTIRRQMFEVFKIH-TTLDND 133
Query: 125 EREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDA 184
E E+ +++AL GLN S V YPH+LSGG QR +IA AL L P ++IADE + LD
Sbjct: 134 EIEKKVEEALRMAGLNIS-VLDMYPHELSGGMKQRAVIAMALSLDPDIVIADEPTTGLDV 192
Query: 185 STRIDVLNLLGEFRDKYG-TSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNP 243
T+ ++++ L + ++ S++ I+HDL + ++D +++Y G + E GE ++F N
Sbjct: 193 ITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGKVFEYGEKSRIFQNT 252
Query: 244 LHPYTKMLLESVPDL-NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTL 302
+PYT L+ S P + N K +GI P + KGC++A RC A+DVC + P L
Sbjct: 253 ANPYTYKLIGSYPSIRNAKRYVEGI-PGSLPDPMKIGKGCKFADRCYMARDVCREEEPEL 311
Query: 303 IEVEKNHWVACHLYQSSRE 321
I+VE NH+ AC + S ++
Sbjct: 312 IKVEDNHYSACFYWDSIKK 330
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 216 bits (544), Expect = 3e-55
Identities = 119/296 (40%), Positives = 177/296 (59%), Gaps = 8/296 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
++AVDGV+ + EGE + +VGESG GK+T + I+ L+ T G + + GK+++ E
Sbjct: 37 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEW 96
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
+ +Q +FQDP AS NP + ++ +Y P + R+E E + + +VGL P
Sbjct: 97 RAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLP 155
Query: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
+ + +YPH+ SGGQ QRI IARAL+L+P+L+I DE VS LD S + V+NLL + + +
Sbjct: 156 NLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 214
Query: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESV----PD 257
G S++FI HDLA+ +ISD ++MY G VE+G ++V+HNPLHPYT+ L+ +V PD
Sbjct: 215 GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPD 274
Query: 258 LNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
L + +E E + GC + RCP A C K RP L E H V+C
Sbjct: 275 LEKNKTIQLLEGEL-PSPINPPSGCVFRTRCPIAGPECAKTRPVL-EGSFRHSVSC 328
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 216 bits (544), Expect = 3e-55
Identities = 121/302 (40%), Positives = 181/302 (59%), Gaps = 16/302 (5%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
V A DG+ I+EGE V LVGESG GK+T+G+ IL+L PT+G I FEG++I ++ ++
Sbjct: 85 VIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYKPTAGEIFFEGENITNYTVTQM 144
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVF------HMIFDSYFPDLGREEREEMIDKALE 135
+K+Q +FQDP++S NP V ++ H +F P E+ + + +
Sbjct: 145 MPLR-KKMQIIFQDPYSSLNPKMTVGQIIGEALLEHGMFKKKDPAY-----EKYVKEIMN 198
Query: 136 EVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLG 195
GL + +YPH+ SGGQ QRI IARAL LKP+ ++ DEAVS LD S + ++NLL
Sbjct: 199 TCGLADYMIY-RYPHEFSGGQRQRIGIARALALKPKFIVCDEAVSALDVSIQSQIINLLN 257
Query: 196 EFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESV 255
+ + ++ S LFI+HDL++ +ISD +MY G +VE + +++ NPLHPYTK+LL ++
Sbjct: 258 DLQKEFNLSYLFISHDLSVVKHISDRIGVMYLGNMVEFTDKREMYANPLHPYTKVLLSAI 317
Query: 256 P--DLNVKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVA 312
P DL + I E + + GC++ RCP AKD+C + P E + H+VA
Sbjct: 318 PETDLQKMRTKRRILLEGDIPSNIITPTGCKFHTRCPIAKDICKREIPQFKEEKPGHFVA 377
Query: 313 CH 314
CH
Sbjct: 378 CH 379
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 214 bits (540), Expect = 9e-55
Identities = 120/320 (37%), Positives = 190/320 (58%), Gaps = 12/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+LEV+NL + + V+AVD V+F + +GE++ L GESG GK++IG ++ + P
Sbjct: 8 ILEVKNLKMYYFTSR---GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 64
Query: 62 ----TSGRILFEGKDIMKFSKKELKTYY-YRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
G I +G++I+ + L+ ++K+ +FQ + NP++ V + MI
Sbjct: 65 PGRIVGGSIKIDGREIVGLPEDVLRREIRWQKISMIFQGAMNALNPVYTVG--YQMIEPL 122
Query: 117 -YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
Y + RE+ + K LE VGL+P E+ +YPH+LSGG QR++IA ALLL+P ++IA
Sbjct: 123 IYHKGMDREDALDRAMKYLELVGLDP-EIVYRYPHELSGGMKQRVVIAMALLLEPDIVIA 181
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + ++NL+ + K G S++FITHDL++ ISD +MY G +VE+G
Sbjct: 182 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDRVAVMYAGKLVEIGP 241
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
+EK+++ P HPYT+ LL ++P L+ E P + GCR+ PRCP A D C
Sbjct: 242 SEKIYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLINPPSGCRFHPRCPYAMDKC 301
Query: 296 FKIRPTLIEVEKNHWVACHL 315
+ P ++EV+K+H+ AC L
Sbjct: 302 KEEEPKMVEVDKDHYAACWL 321
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 214 bits (539), Expect = 1e-54
Identities = 133/324 (41%), Positives = 191/324 (58%), Gaps = 20/324 (6%)
Query: 1 MLLEVQNLTKIFTS--GLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
MLLEV+NL F + G+ V+AVDGV+ +++GEIV L GESGSGK+TIG I+RL
Sbjct: 5 MLLEVRNLKVYFYTKRGI-----VKAVDGVNLYLDKGEIVGLAGESGSGKSTIGYAIMRL 59
Query: 59 LT----PTSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQV-DKVFHM 112
+ SG ILF+G++I+K ++ K Y ++K+ VFQ + F P+ ++ D++ +
Sbjct: 60 VPFPGKIESGEILFKGENILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIKDQIIEV 119
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+ + + EE I + + V ++P ++ KYPH+LSGGQ QR IA AL L P +
Sbjct: 120 LRIHGW----NGDYEERIKELFKMVNMDP-QLAEKYPHELSGGQKQRAFIAMALALNPEV 174
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LIADE + LD + +LNLL + R + S++FITHDLAL ISD +Y G ++E
Sbjct: 175 LIADEPTTALDVMVQEHILNLLKKLRKELNLSIIFITHDLALLSEISDRDYTLYAGKVME 234
Query: 233 MGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAK 292
G +E +F P HPYT +L+ES+ L+ K KGI P GCR+ RCP A+
Sbjct: 235 SGPSEVIFKKPRHPYTSLLIESIATLD-KDIIKGI-PGAMPDLSSPPLGCRFNTRCPFAR 292
Query: 293 DVCFKIRPTLIEVEKNHWVACHLY 316
D+CFK P + VAC LY
Sbjct: 293 DICFKEEPKMKTFSDGDEVACWLY 316
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 213 bits (538), Expect = 2e-54
Identities = 118/297 (39%), Positives = 189/297 (62%), Gaps = 10/297 (3%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
++AVDGV+ + EGE + +VGESG GK+T + I+ L+ T G +++ G+D+ + +E+
Sbjct: 40 LKAVDGVNVRLYEGETLGVVGESGCGKSTFARAIIGLVQATHGEVVWLGQDLTRM--QEV 97
Query: 82 KTYYYRK-VQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLN 140
K RK +Q +FQDP AS NP V + +++P+L ++E ++ + + + +VGL
Sbjct: 98 KRRATRKQIQMIFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLL 157
Query: 141 PSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDK 200
P+ + +YPH+ SGGQ QRI IARAL+LKP+++I DE VS LD S + V+NLL E + +
Sbjct: 158 PNVIN-RYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKE 216
Query: 201 YGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESV--PDL 258
G S++FI HDL++ +ISD ++MY G VE+G ++++F NP HPYTK L+ +V PD
Sbjct: 217 LGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGVSKELFANPKHPYTKALMSAVPIPDP 276
Query: 259 NVKWEFKGIEPEKEE--GKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
N++ K I+ + + + GC + RCP+A C K +P +I+ H V+C
Sbjct: 277 NIE-RNKTIQMLEGDLPSPMNPPSGCVFRTRCPQATAECAKTKP-VIKGSDIHSVSC 331
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 213 bits (538), Expect = 2e-54
Identities = 126/325 (38%), Positives = 195/325 (59%), Gaps = 23/325 (7%)
Query: 2 LLEVQNLTKIFTSG--LIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
+++V+NL FT G Y V+A+DGV+ +I E EI+ +VGESGSGKTT+G++ + L
Sbjct: 14 VVKVENLKVYFTKGGMFTKKYVVKALDGVTLSIKEREIMGVVGESGSGKTTLGRVTIGLQ 73
Query: 60 TPTSGRILFEGKD----IMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFD 115
PTSG + + + + K K++ Y VQ ++QDP++S +P+ +V +D
Sbjct: 74 KPTSGNVYIKADNKEINVNKAKLKDISNY----VQMIYQDPYSSIDPIMRV-------YD 122
Query: 116 SYFPDLGREEREEMIDKALEE----VGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPR 171
L ++ + IDK +EE V L P E+ +QLSGGQ QR+ IARA+++ P+
Sbjct: 123 VLATPLKYKKMSD-IDKKIEEAMRLVDL-PLELLENRVYQLSGGQRQRLSIARAIVVNPK 180
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIV 231
++ADE +MLDAS + ++L ++ + R+ G S ++ITH+L + ISD I++Y G IV
Sbjct: 181 YIVADEPTTMLDASLKGEILKIIKDARESKGFSFMYITHELPIAKIISDRIIVLYLGKIV 240
Query: 232 EMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKA 291
E+G + ++ NPLHPYT+ L+E P ++ K E + + V KGC + PRCP A
Sbjct: 241 ELGNSNEIIKNPLHPYTQGLIEVYPRIDPSLRDKIKEIKIKVDIVRPDKGCVFYPRCPFA 300
Query: 292 KDVCFKIRPTLIEVEKNHWVACHLY 316
C + P L EV +NH+VAC LY
Sbjct: 301 MPKCKEQEPELKEVSQNHYVACWLY 325
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 212 bits (535), Expect = 4e-54
Identities = 121/321 (37%), Positives = 192/321 (59%), Gaps = 17/321 (5%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LLEV+NL+ F G+ V+AV+ VSF++N E++ +VGE+GSGK+ K I+RL+
Sbjct: 7 LLEVKNLSTWFYMEEGI-----VKAVNDVSFSLNSNEVLGIVGETGSGKSVTVKSIMRLI 61
Query: 60 TP----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFD 115
P SG I+++G+DI+K +KE+ +++ +FQDP S NPL+ + + +
Sbjct: 62 KPPGKIVSGEIIYKGQDILKIPEKEMHRIRGKEIAMIFQDPMMSLNPLYTIGD---QLME 118
Query: 116 SYFPDLGREEREEMID--KALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRL 172
+ LG ++R + + LE VG+ E R YP + SGG QR++IA AL P +
Sbjct: 119 TIRYHLGYDKRRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSCNPSV 178
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LIADE + LD + + +L L+ E + ++ T ++FITHDL + ++D ++MY G VE
Sbjct: 179 LIADEPTTALDVTIQAQILELMKELQKEFKTGLIFITHDLGVIASMADRIMVMYGGRQVE 238
Query: 233 MGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAK 292
+G ++++F++P HPYTKMLL SVP ++ + E P + V C + PRCP+
Sbjct: 239 IGTSDQIFYSPRHPYTKMLLRSVPRVDKRLEKLESIPGQPPRMVDIPPVCPFLPRCPRRV 298
Query: 293 DVCFKIRPTLIEVEKNHWVAC 313
+ C K P L E+E+NH+V C
Sbjct: 299 ERCLKELPELSEIEENHYVRC 319
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 212 bits (533), Expect = 6e-54
Identities = 122/330 (36%), Positives = 198/330 (59%), Gaps = 30/330 (9%)
Query: 2 LLEVQNLTKIFTS--GLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
L+E++ ++ IF GL + A+ VS ++N+G+++ ++GESG+GKTT+G++I+ L
Sbjct: 3 LMELKGVSVIFEDKVGLFKKRKFYALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGLQ 62
Query: 60 TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFP 119
PTSG ++++G +I K +K K Y + VQ + QDP+++ P ++ + + +
Sbjct: 63 KPTSGEVVYDGYNIWKNKRKIFKKYR-KDVQLIPQDPYSTL-PFNKTVEEILVAPILRWE 120
Query: 120 DLGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
+ ++E + + LE V L P+E GKYPHQLSGGQ QR+ IAR+L + PR+++ADE
Sbjct: 121 KINKDELRKRLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVNPRIIVADEP 180
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYI-----SDSTIIMYRGTIVEM 233
V+M+DAS RI +LN L E +++ +++FITHD+ + Y +TI+M+ G IVE
Sbjct: 181 VTMVDASLRIGILNTLAEIKNRLNLTMVFITHDIPIARYFYHLFDKGNTIVMFAGRIVER 240
Query: 234 GETEKVFHNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEKEEGKVWKIKGCRYAP 286
+ E++ +PLHPYT L++ P ++NVK ++ +E KGC Y
Sbjct: 241 ADLEEILKDPLHPYTNDLIKLTPSIDNLYKEINVKINYERVE-----------KGCPYRL 289
Query: 287 RCPKAKDVCFKIRPTLIEVEKNHWVACHLY 316
RCP A D+C P L + +H VAC LY
Sbjct: 290 RCPFAMDICKNEEPKLFKY--SHEVACFLY 317
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 212 bits (533), Expect = 6e-54
Identities = 121/325 (37%), Positives = 191/325 (58%), Gaps = 13/325 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+++NL ++ + LI V+ + V+ + +GEIV +VGESGSGK+T+G I R+L
Sbjct: 5 VVLQIRNLN-VYYNTLISW--VKVLSDVNLDVEKGEIVGVVGESGSGKSTLGHAISRILP 61
Query: 61 PTS---GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
P + G I+ +G ++ K EL+ Y V +FQ+P S NP+ +V
Sbjct: 62 PNARIQGDIIVDGVNLAKLKDSELQKYRGTWVFMIFQNPLNSLNPVKKVGSQLLEAVKIR 121
Query: 118 FPDLGREEREEMIDKALEEVGLN-----PSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+ G++ EE + + + EV + P + +YPHQLSGGQ+QRI+I+ ALLLKP+L
Sbjct: 122 YQREGKKAEEESLMRDVIEVLKDLRLPDPYSIIDRYPHQLSGGQVQRIVISMALLLKPKL 181
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LIADE S LD + + V+NL + + TS+LFITHD++L Y +SD ++MY G I+E
Sbjct: 182 LIADEPTSALDVTIQAQVVNLFKQLNKEINTSILFITHDISLAYVVSDRIVVMYAGRIME 241
Query: 233 MGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAK 292
G+ E+V +P+HPYT+ L+ S+P + + I P GC+++ RC K
Sbjct: 242 DGKVEEVLKSPMHPYTQGLVASIPSGDKNQKLTAI-PGNPPSFFALPTGCKFSNRCSKVF 300
Query: 293 DVCFKIRPTLIEVEKNHWVACHLYQ 317
D+C K P++IE + + C LY+
Sbjct: 301 DICRKKEPSIIE-KNGRKIRCWLYE 324
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 212 bits (533), Expect = 6e-54
Identities = 124/322 (38%), Positives = 180/322 (55%), Gaps = 15/322 (4%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LL V NL F G+ V+AVDG+S+ +N+GE + +VGESGSGK+ +LRL+
Sbjct: 4 LLNVNNLKVEFHRVEGI-----VKAVDGISYKLNKGESLGIVGESGSGKSVSVLSLLRLI 58
Query: 60 TPTS----GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVD-KVFHMIF 114
G +F GKD++K +K+EL+ + + +FQ+P S NP+ +V +V I
Sbjct: 59 NRNGRIVDGEAIFLGKDLLKLNKEELRNIRGKDISIIFQNPMTSLNPIIRVGIQVMEPII 118
Query: 115 DSYFPDLGREEREEMIDKALEEVGLNPSEVRG-KYPHQLSGGQLQRILIARALLLKPRLL 173
+ + EE E + LE VG+ S R YP Q SGG QR++IA AL P+LL
Sbjct: 119 --WHRLMKNEEARERAIELLERVGIPESPKRFLNYPFQFSGGMRQRVMIAMALACHPKLL 176
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
IADE + LD + + ++ LL E +++YG SV+FITHDL++ D I MY G IVE
Sbjct: 177 IADEPTTALDVTIQAQIMELLQELKEEYGMSVIFITHDLSVATNFCDRIITMYAGKIVEE 236
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
E++ PLHPYTK LL S ++ + + P GC++ PRC A +
Sbjct: 237 APVEEILKTPLHPYTKGLLNSTLEIGSRGKKLVPIPGNPPNPTKHPSGCKFHPRCSFAME 296
Query: 294 VCFKIRPTLIEVEKNHWVACHL 315
+C + P L+ + +NH VACHL
Sbjct: 297 ICQREEPPLVNISENHRVACHL 318
>gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-binding; YkfD
[Halobacterium sp. NRC-1]
Length = 445
Score = 210 bits (530), Expect = 1e-53
Identities = 125/317 (39%), Positives = 186/317 (58%), Gaps = 22/317 (6%)
Query: 2 LLEVQNLTKIF-TSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
L+EV +L K + G G V+AVDGV+F I EGE + LVGESGSGKTT+G+ +++L T
Sbjct: 19 LVEVTDLKKHYGDGGRFSGPPVKAVDGVNFEIQEGETLGLVGESGSGKTTLGRTLIQLET 78
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
T G + F+G+DI K + +LK + + Q VFQDP +S N + ++ D++ +
Sbjct: 79 ATEGTVSFDGRDITKLTGSDLKQWR-KNAQIVFQDPDSSLNDRMTIGEIVREPLDAHDWN 137
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
ER + + + L VGL +YPHQ SGGQ QRI IARAL L+P ++ DE VS
Sbjct: 138 -SPAERRDRVKELLSSVGLQADHYY-RYPHQFSGGQRQRIGIARALALEPEFMVLDEPVS 195
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LDAS + +LNLL + +D++G + LFI HDL++ +I D +MY G I+E+GETE+++
Sbjct: 196 ALDASVQAKILNLLEDLQDEFGLTYLFIAHDLSVVRHICDRVAVMYLGKIMEIGETEELY 255
Query: 241 HNPLHPYTKMLLESVP------DLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
+ +PYT+ LL ++P D N + G P GC+++ RCP
Sbjct: 256 ADAKNPYTRSLLSAIPRPDPTIDRN-RITLPGAPPSPRNPPA----GCQFSTRCPA---- 306
Query: 295 CFKIRP-TLIEVEKNHW 310
KIRP +++ + W
Sbjct: 307 --KIRPEAYADIDDDTW 321
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 209 bits (526), Expect = 4e-53
Identities = 118/318 (37%), Positives = 195/318 (61%), Gaps = 10/318 (3%)
Query: 2 LLEVQNLTKIF--TSGLIGGY-QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
+L ++LT+ + + GL G+ QVRA++GVSF + G+ +++VGESG GK+T+ + + +
Sbjct: 4 VLTARDLTRHYEVSRGLFKGHAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLI 63
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSY 117
PTSG + G+++ K + K+ + R VQ VFQ+P+AS NP ++ D++ + +
Sbjct: 64 EEPTSGSLKIAGQEV-KGASKDQRRQLRRDVQMVFQNPYASLNPRQKIGDQLAEPLLIN- 121
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
L REER E + + + +VGL P + +YPH SGGQ QRI +ARA++L+P++L+ADE
Sbjct: 122 -TALSREERREKVQQMMRQVGLRPEHYQ-RYPHMFSGGQRQRIALARAMMLQPKVLVADE 179
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
S LD S + VLNL + + ++ T+ +FI+H+LA+ +++D ++MY G EMG +
Sbjct: 180 PTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAVVRHVADDVLVMYLGRPAEMGPAD 239
Query: 238 KVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKDVCF 296
K++ NPLHPYT+ LL + P ++ I + E + +GC + RCP A + C
Sbjct: 240 KLYENPLHPYTRALLSATPAIHPDPTKPKIRIQGELPNPLNPPEGCAFHKRCPYATERCR 299
Query: 297 KIRPTLIEVEKNHWVACH 314
P L +++ VACH
Sbjct: 300 SEVPELRLLDQRQ-VACH 316
>gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-binding; AppF
[Halobacterium sp. NRC-1]
Length = 440
Score = 209 bits (526), Expect = 4e-53
Identities = 117/296 (39%), Positives = 175/296 (58%), Gaps = 20/296 (6%)
Query: 21 QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKE 80
+VRAVDGVSF + GE + +VGESG GK+T+ + +LRL PT+G + F+G+D+ +
Sbjct: 39 RVRAVDGVSFEVRAGETLGIVGESGCGKSTVAESVLRLTDPTAGSVYFDGEDVTAYDDTA 98
Query: 81 LKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLG-REEREEMIDKALEEVGL 139
LK + R+ Q +FQ+P +SF+P + + +G R R E+ LE VG+
Sbjct: 99 LKRFR-REAQMIFQNPDSSFDPRMTTGESVAEPLKIH--GVGPRSRRLEIARDLLERVGM 155
Query: 140 NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRD 199
+ E +YPH+LSGGQ QR+ +ARAL++ PRL++ADE VS LD S + +VL LL + +
Sbjct: 156 S-GEDAARYPHELSGGQKQRVALARALVVNPRLIVADEPVSALDVSVQAEVLTLLNDIQA 214
Query: 200 KYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLN 259
++ VLFI+HD+ + + D +MY G IVEMG TE VF++P HPYT+ LL S+P +
Sbjct: 215 EFNLGVLFISHDMGVVREVCDRVAVMYLGEIVEMGRTEDVFNDPEHPYTRALLRSIPTVG 274
Query: 260 VKWE-----FKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHW 310
V+ +G P + GC + RCP+ I+P + E+ HW
Sbjct: 275 VESRGTDAGLRGEVPPPSDPPT----GCNFHTRCPEV------IQPDGYDFEQAHW 320
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 208 bits (525), Expect = 5e-53
Identities = 118/294 (40%), Positives = 169/294 (57%), Gaps = 4/294 (1%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
VRAVDGV I EGE++++VGESG GKTT+GK I+ + P+ G I + G +++ +
Sbjct: 41 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRG-ELLTPHRLAR 99
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
RK+Q VFQDP+ S +PL V + G E R ++ LE VGL P
Sbjct: 100 DRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEM-LETVGLTP 158
Query: 142 S-EVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDK 200
E + PHQLSGGQ QR+ IAR L+L+P +++ADE VSM+D S R +L+L+ ++ +
Sbjct: 159 GREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRR 218
Query: 201 YGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNV 260
G +++ ITHD+A+ ++D +MY G IVE+GE V NP HPYT L+ S P ++
Sbjct: 219 TGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTPSISR 278
Query: 261 KWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACH 314
+ + + V GCR+ PRCP A +C P L+E E ACH
Sbjct: 279 RRPPRFPISGEVPSAVAIPPGCRFHPRCPLASSLCRSREPALVE-EGGRLYACH 331
>sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIF
>gi|98019|pir||S11153 oligopeptide transport protein
amiF - Streptococcus pneumoniae
>gi|47347|emb|CAA35217.1| (X17337) AmiF protein
[Streptococcus pneumoniae]
Length = 308
Score = 208 bits (524), Expect = 7e-53
Identities = 124/311 (39%), Positives = 183/311 (57%), Gaps = 23/311 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
L+E+++L F G + AV +F IN+GE SLVGESGSGKTTIG+ I+ L
Sbjct: 5 LVEIKDLEISFGEG---SKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDT 61
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
++G I+F+G+ I +E R++Q +FQDP AS N VD + ++
Sbjct: 62 SNGDIIFDGQKINGKKSREQAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFK 121
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
EER+E + + EVGL + +YPH+ SGGQ QRI IARAL+++P +IADE +S
Sbjct: 122 DEEERKEKVQSIIREVGLLAEHLT-RYPHEFSGGQRQRIGIARALVMQPDFVIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LD S R VLNLL +F+ + G + LFI HDL++ +ISD ++Y+G IVE+ ETE++F+
Sbjct: 181 LDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN 240
Query: 242 NPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKI-KGCRYAPRCPKAKDVCFKIRP 300
NP+HPYT+ LL +VP +P E KV K+ +G ++ K P
Sbjct: 241 NPIHPYTQALLSAVPI---------PDPILERKKVLKVYEGSQHDYETDK---------P 282
Query: 301 TLIEVEKNHWV 311
+++E+ H+V
Sbjct: 283 SMVEIRPGHYV 293
>gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis]
Length = 311
Score = 208 bits (524), Expect = 7e-53
Identities = 114/256 (44%), Positives = 167/256 (64%), Gaps = 6/256 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
L+EV+N+ + F + G V+AV+ +SF I GE LVGESG GK+T G+ I+RL
Sbjct: 8 LIEVKNVKQHFD---VSGGVVKAVNDISFDIYRGETFGLVGESGCGKSTTGRTIIRLYDA 64
Query: 62 TSGRILFEGKDIM-KFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
T+G +LF+G+++ K S+ ELK + RK+Q +FQDP+AS NP V + D +
Sbjct: 65 TAGEVLFDGENVHGKKSRAELKKFN-RKMQMIFQDPYASLNPRMTVGDIIAEGIDIHGLA 123
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
++ER + + + L VGLN E ++PH+ SGGQ QRI IARAL ++P +IADE +S
Sbjct: 124 KSKKERMDRVHELLNTVGLN-KEHANRFPHEFSGGQRQRIGIARALAVEPEFIIADEPIS 182
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD S + V+NLL + + + G + LFI HDL++ YISD +MYRG IVE+ +E+++
Sbjct: 183 ALDVSIQAQVVNLLKKLQKEKGLTYLFIAHDLSMVKYISDRIGVMYRGQIVELTTSEELY 242
Query: 241 HNPLHPYTKMLLESVP 256
NP+HPYTK LL ++P
Sbjct: 243 ANPVHPYTKSLLSAIP 258
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 208 bits (524), Expect = 7e-53
Identities = 120/303 (39%), Positives = 171/303 (55%), Gaps = 5/303 (1%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
V AVDG+S I +GE L GESG GK+T G+L+LRL+ PT G I F+G DI K K E+
Sbjct: 30 VHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEPTEGSIYFDGIDITKLDKDEM 89
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
+ R++ VFQDP +S NP + + + EE+ + I + LE VGL
Sbjct: 90 RKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRPLEIHRLAESEEEKYDKIVEILEAVGLGE 148
Query: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
+ +YPH+LSGGQLQR+ IARA++ P ++ DE S LD S + +LNLL + K+
Sbjct: 149 EHL-SRYPHELSGGQLQRVSIARAIITNPDFVVLDEPTSALDISVQAQILNLLVNLQRKF 207
Query: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPL-HPYTKMLLESVPDL-- 258
+ LFI+HD+++ Y+SD IMY G +VE+ + + HPYT LL S P L
Sbjct: 208 NLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSIDDFRKGEIYHPYTAYLLLSTPALHP 267
Query: 259 NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQS 318
+ + K I + + GCR+ RCP C P L+E++K+H+VACH
Sbjct: 268 SKRTSRKVILTGEVPSPINVPPGCRFHVRCPFVTQKCKDEEPPLVEIKKDHYVACHYPDK 327
Query: 319 SRE 321
+RE
Sbjct: 328 TRE 330
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 208 bits (523), Expect = 9e-53
Identities = 128/323 (39%), Positives = 196/323 (60%), Gaps = 15/323 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTT-IGKLILRL- 58
+LL V+NL +I+ S G V+AVDGVSF + +GE+ + GESG GK+T + LILR
Sbjct: 2 ILLRVRNL-RIYYSTPRGF--VKAVDGVSFEVKKGEVFGIAGESGCGKSTLVHSLILRKP 58
Query: 59 -LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDS 116
+T G+ +F+GKD+MK S++E + Y+++ + Q + NP ++ D V+ + +
Sbjct: 59 PMTHKGGKAIFKGKDLMKLSREEARKIQYKELSIIPQYAMNALNPTKKIKDIVWDLAREH 118
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
D ++E E+++ + L V L+P +V YP +LSGG QR + + LL P LLIAD
Sbjct: 119 GMQD--KKEVEKLLKERLSMVKLSP-KVAEMYPVELSGGMRQRATMVVSTLLNPDLLIAD 175
Query: 177 EAVSMLDASTRIDVLNLLGEFRDK-YGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
E S LD +T+ V+ LL F ++ S++F+THDLAL I+D +IMY G +VE+G
Sbjct: 176 EVTSALDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAGKVVEIGS 235
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWE---FKGIEPEKEEGKVWKIKGCRYAPRCPKAK 292
E+V +P HPYT++LL S+P + V ++ +GI P + +GCR+ RCP A
Sbjct: 236 MEEVLESPAHPYTQLLLNSLPRMGVHYKRERLRGI-PGYPISLLNPPEGCRFYTRCPYAM 294
Query: 293 DVCFKIRPTLIEVEKNHWVACHL 315
VC ++ P L+EV H+ ACHL
Sbjct: 295 QVCREVEPELVEVSPGHYAACHL 317
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 207 bits (521), Expect = 2e-52
Identities = 123/334 (36%), Positives = 199/334 (58%), Gaps = 20/334 (5%)
Query: 2 LLEVQNL-TKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
LL+++NL T FT + V+AVDGVSF I EG + +VGESG GK+ + I++LL+
Sbjct: 4 LLQIKNLRTYFFTDEGV----VKAVDGVSFEIEEGRTLGVVGESGCGKSVTARSIIKLLS 59
Query: 61 PT----SGRILF--EGK--DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFH 111
SG IL+ +G+ D++KFSK+E++ R + +FQ+P A+F+P++ + D++
Sbjct: 60 TAGRIVSGEILYNMDGQMVDLVKFSKEEIRKVRGRHIAMIFQEPMAAFSPVYTIGDQITE 119
Query: 112 MIFDSYFPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKP 170
+ Y + ++E E + L VG+ P ++ YP + SGG QR +IA AL P
Sbjct: 120 GMI--YHFGITKQEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIAMALSCNP 177
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
RLLIADE + LD + + VL+LL + + +Y +++ ITH++ + ++D ++MY G +
Sbjct: 178 RLLIADEPTTALDVTIQAQVLDLLKDLQQEYKMAIMMITHNMGVVAEMADHVVVMYLGRV 237
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPDLNVKWE-FKGIEPEKEEGKVWKIKGCRYAPRCP 289
VE E++F+NP HPYT +LL S+P + + E + IE + + + KGCR+ PRCP
Sbjct: 238 VESAPVEELFYNPKHPYTSLLLRSIPVVGKRVERLEVIEGDVPDPRNMP-KGCRFHPRCP 296
Query: 290 -KAKDVCFKIRPTLIEVEKNHWVACHLYQSSREG 322
K +C + P +EV H V+C LY ++G
Sbjct: 297 YMMKGICDEREPVEVEVGPEHRVSCFLYGGEKDG 330
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 207 bits (521), Expect = 2e-52
Identities = 117/305 (38%), Positives = 174/305 (56%), Gaps = 7/305 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP----TSGRILFEGKDIMKFS 77
V+AVDGVSFT+ GE++ + GESGSGK+T+ IL L+ P GRI+ +G D+ S
Sbjct: 22 VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMS 81
Query: 78 KKELKTYY-YRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEE 136
+ EL+ ++KV VFQ P++ V + + + +GR E + + + LE
Sbjct: 82 EAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIH-RGVGRHEARQRVYELLES 140
Query: 137 VGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGE 196
VGL+ S + +YPH+LSGGQ QR++IA AL L+P ++IADE + LD + +LNLL +
Sbjct: 141 VGLHRS-IADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKK 199
Query: 197 FRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVP 256
+ S++ ITHDL++ ++++ +IMY G I E G ++ VF P HPYT+ LL+++P
Sbjct: 200 LAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHPYTQALLKAIP 259
Query: 257 DLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLY 316
L + P GCR+ PRCPKA D C + P L V H AC L
Sbjct: 260 KLRGPIDRLAYIPGSPPDLRNPPPGCRFHPRCPKAFDRCSREEPPLFRVGDGHLSACWLN 319
Query: 317 QSSRE 321
+ E
Sbjct: 320 EGGGE 324
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 207 bits (521), Expect = 2e-52
Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 27/302 (8%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV L F +G V+AVDGV+F I EGE LVGESG GK+T+G++++RL P
Sbjct: 6 LLEVSQLKMHFDAGK--KRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRLYQP 63
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVF------HMIFD 115
T G + + G ++ S+KE + + RK+Q +FQDP+AS NP V ++ H +++
Sbjct: 64 TEGSVTYRGTNLHALSEKE-QFAFNRKLQMIFQDPYASLNPRMTVREIILEPMEIHNLYN 122
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
++ + R ++D+ LE VGL+P + +YPH+ SGGQ QRI IARAL L P ++A
Sbjct: 123 TH------KARLSVVDELLEAVGLHP-DFGSRYPHEFSGGQRQRIGIARALSLNPEFIVA 175
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE +S LD S + V+NLL + + G + LFI HDL++ +ISD +MY G ++E+ E
Sbjct: 176 DEPISALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHISDRIGVMYLGHMMEITE 235
Query: 236 TEKVFHNPLHPYTKMLLESV----PDLNVKWE---FKGIEPEKEEGKVWKIKGCRYAPRC 288
+ ++ PLHPYTK LL S+ P+L K E KG P V GC + RC
Sbjct: 236 SGTLYREPLHPYTKALLSSIPIPDPELEDKRERILLKGELP----SPVNPPSGCVFRTRC 291
Query: 289 PK 290
P+
Sbjct: 292 PE 293
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 205 bits (517), Expect = 5e-52
Identities = 115/295 (38%), Positives = 176/295 (58%), Gaps = 5/295 (1%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
++AV VSF + GE + +VGESG GK+T+ + I+ L+ + G IL+ GK + K S K+
Sbjct: 36 LKAVKDVSFKLYAGETLGVVGESGCGKSTLARAIIGLVEASEGEILWLGKHLRKQSAKQW 95
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
K + +Q +FQDP AS NP + ++ Y P L E +E + + +VGL P
Sbjct: 96 KETR-KDIQMIFQDPLASLNPRMNIGEIIAEPLKIYQPHLSAAEVKEKVQAMMLKVGLLP 154
Query: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
+ + +YPH+ SGGQ QRI IARAL+++P+++I DE VS LD S + V+NLL + +
Sbjct: 155 NLIN-RYPHEFSGGQCQRIGIARALIIEPKMIICDEPVSALDVSIQAQVVNLLKSLQKEM 213
Query: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVK 261
G S++FI HDLA+ +ISD ++MY G +E+G +V+++ HPYTK L+ +VP + K
Sbjct: 214 GLSLIFIAHDLAVVKHISDRVLVMYLGNAMELGSDVEVYNDTKHPYTKALMSAVPIPDPK 273
Query: 262 WE-FKGIEPEKEE--GKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
E K IE + + + GC + RC KA + C K +P +H+VAC
Sbjct: 274 LERNKSIELLEGDLPSPINPPSGCVFRTRCLKADENCAKQKPPFTSQNNSHFVAC 328
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 204 bits (514), Expect = 1e-51
Identities = 125/321 (38%), Positives = 190/321 (58%), Gaps = 13/321 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTT-IGKLILRL-- 58
LL+V+NL + + + GY VRAVDGVSF + EGE+ + GESG GK+T + LILR
Sbjct: 3 LLDVRNLRVYYRTPV--GY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSY 117
+ G +F+G+D+M + EL+ Y ++ + Q + NP ++ D V+ + +
Sbjct: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+ D R E EE++ + L V L+P V YP +LSGG QR + + LL P LLIADE
Sbjct: 120 YAD--RREVEELLRERLSMVKLSP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
Query: 178 AVSMLDASTRIDVLNLLGEF-RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
S LD +T+ V+ LL F ++ S++F+THDLAL I+D ++MY G +VE+G
Sbjct: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE--PEKEEGKVWKIKGCRYAPRCPKAKDV 294
E+V NP HPYT++LL S+P + V ++ + + P + KGCR+ RCP A +
Sbjct: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMED 296
Query: 295 CFKIRPTLIEVEKNHWVACHL 315
C + P L++V ++H+ ACHL
Sbjct: 297 CRDVEPKLVKVGRDHYAACHL 317
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 204 bits (514), Expect = 1e-51
Identities = 125/321 (38%), Positives = 190/321 (58%), Gaps = 13/321 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTT-IGKLILRL-- 58
LL+V+NL + + + GY VRAVDGVSF + EGE+ + GESG GK+T + LILR
Sbjct: 3 LLDVRNLRVYYRTPV--GY-VRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLILRKPP 59
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSY 117
+ G +F+G+D+M + EL+ Y ++ + Q + NP ++ D V+ + +
Sbjct: 60 MEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHG 119
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+ D R E EE++ + L V L+P V YP +LSGG QR + + LL P LLIADE
Sbjct: 120 YAD--RREVEELLRERLSMVKLSP-RVADMYPVELSGGMRQRATMVVSTLLNPDLLIADE 176
Query: 178 AVSMLDASTRIDVLNLLGEF-RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
S LD +T+ V+ LL F ++ S++F+THDLAL I+D ++MY G +VE+G
Sbjct: 177 ITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPM 236
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE--PEKEEGKVWKIKGCRYAPRCPKAKDV 294
E+V NP HPYT++LL S+P + V ++ + + P + +GCR+ RCP A +
Sbjct: 237 EEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPRGCRFYTRCPFAMEH 296
Query: 295 CFKIRPTLIEVEKNHWVACHL 315
C ++ P L++V K H+ ACHL
Sbjct: 297 CPEVEPKLVKVGKEHYAACHL 317
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 204 bits (514), Expect = 1e-51
Identities = 121/307 (39%), Positives = 180/307 (58%), Gaps = 20/307 (6%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
VRAVDGVS ++ GE + LVGESGSGK+TIG+ IL L P SG I F+G+ S+++L
Sbjct: 34 VRAVDGVSLSVQAGETLGLVGESGSGKSTIGRAILGLNEPLSGTIHFDGRPT--HSRRDL 91
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMI--FDSYFPDLGREEREEMIDKALEEVGL 139
+ R++Q VFQDP++S NP ++ + F S P +++ + + + L VGL
Sbjct: 92 R----RRMQMVFQDPYSSLNPRLKIGDAIGEVLRFHSIVP---KQDVDREVRRLLSLVGL 144
Query: 140 NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRD 199
+ + + P ++SGGQ QR IARAL L+P L+ DE V+ LD S + +LNLL + R
Sbjct: 145 SAAMAERR-PREMSGGQRQRAGIARALALRPDFLVLDEPVAALDVSIQAQILNLLTDLRQ 203
Query: 200 KYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLN 259
+ G ++LFI H L + ++SD ++Y G I+E+G VF + HPYTK LL +VP++N
Sbjct: 204 ELGLTMLFIAHGLGVVRHMSDRIAVLYLGKIMEVGPAHAVFESSRHPYTKALLSAVPEIN 263
Query: 260 VKWEFKGIEPEKEEGKVWK----IKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHL 315
+ K P +G V GCR+ RCP A+D+C K +P + V +H+ CH
Sbjct: 264 L---VKRQRPPVTQGDVPSPLNVPSGCRFRTRCPVAQDIC-KTQPPEVPVGPDHFSRCHF 319
Query: 316 YQSSREG 322
+ G
Sbjct: 320 ARDLASG 326
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 204 bits (513), Expect = 1e-51
Identities = 112/307 (36%), Positives = 177/307 (57%), Gaps = 9/307 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTS----GRILFEGKDIMKFS 77
V+AVDGVSF + EGE + +VGESGSGK+ I+RLL G+I+F+G+++++ S
Sbjct: 15 VKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVDGKIIFKGRNLLELS 74
Query: 78 KKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSYFPDLGREEREEMIDKALEE 136
+ E++ +++ +FQ+P + NP+ + D++ I ++ +E +M L +
Sbjct: 75 ENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAII--LHQNVSEKEARKMAIDLLRK 132
Query: 137 VGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLG 195
VG+ E R +YPHQLSGG QR +IA AL +P LLIADE + LD + + +L L+
Sbjct: 133 VGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALDVTIQAQILELMK 192
Query: 196 EFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESV 255
E + +YG +++ ITHD+ + +SD +MY G +VE G+ + +F P HPYT LLES+
Sbjct: 193 ELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEPKHPYTYALLESI 252
Query: 256 PDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCP-KAKDVCFKIRPTLIEVEKNHWVACH 314
P ++V+ E P + GC++ PRC K C P L +++ NH V C
Sbjct: 253 PRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPELEDLDGNHKVRCF 312
Query: 315 LYQSSRE 321
+Q E
Sbjct: 313 FWQKLDE 319
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 203 bits (512), Expect = 2e-51
Identities = 110/260 (42%), Positives = 167/260 (63%), Gaps = 5/260 (1%)
Query: 1 MLLEVQNLTKIF--TSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
+++++ NL+KI+ LI + AV+ VSF + +G I +LVG SG GK+TI K++ +
Sbjct: 355 VVMKILNLSKIYYIRKNLILSEPINAVNDVSFELKKGTITALVGGSGHGKSTIAKILAGM 414
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
+ TSG+I+ GKD+ ++ + +Y VQ +FQDP++S +P H V +
Sbjct: 415 IQQTSGKIILLGKDVSEYGVRN-SMWYKENVQMIFQDPYSSLDPRHTVRWHVERPLLIHK 473
Query: 119 PDLGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+++ I + L+ VGL P E KYPH+LSGG+ QR+ IARA ++P++L+ADE
Sbjct: 474 KVSNKDQLLPKIIEVLKNVGLKPPEKYLYKYPHELSGGERQRVAIARATAVEPKVLVADE 533
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
VSMLDAS R +LNL+ +F+ K G S+L+ITHD+A YI+D +++Y+G IVE G T
Sbjct: 534 PVSMLDASLRAGILNLIKKFK-KNGISILYITHDIATVNYIADEIMVIYKGRIVEKGNTY 592
Query: 238 KVFHNPLHPYTKMLLESVPD 257
+V NP H YTK L+E+VPD
Sbjct: 593 EVISNPSHEYTKRLIEAVPD 612
Score = 154 bits (386), Expect = 1e-36
Identities = 97/299 (32%), Positives = 155/299 (51%), Gaps = 8/299 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL----TPTSGRILFEGKDIMKFS 77
V V V+F + EI ++ GESG GK+T+ I LL G + + KDI+ +
Sbjct: 25 VIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYGLLKYPGVVLRGHVYLKDKDILSIT 84
Query: 78 KKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEV 137
++EL+ ++ V Q + +P+ ++ M+ + + EE ++I + LE V
Sbjct: 85 QEELRKLRMKEFVYVPQFAMDALDPVAKIGD--QMMRAAVSHGVNVEEARKLIKEKLELV 142
Query: 138 GLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEF 197
L P V YPH+LSGG QR++IA ++LL P L+I DE + LD + ++L L
Sbjct: 143 DL-PYNVVNMYPHELSGGMRQRVVIATSILLNPSLIILDEPTTGLDVIVQYEILKDLKRI 201
Query: 198 RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPD 257
+ + G S++ I+HD+++ ISD IMY G IVE+G E++ P HPYT +L+ S+P
Sbjct: 202 QRQLGVSLVIISHDISMLLMISDRVGIMYAGEIVEIGSKEEIIKRPSHPYTYLLISSLPS 261
Query: 258 LNVKWEFKGIEPEKEEGKVWKI-KGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHL 315
L + E P + K+ CR+ RCP + C + P L ++ H C L
Sbjct: 262 LVKRREKLLSIPGNPPLMLSKVPNSCRFYDRCPFKMEKCSTLNPALGDIMDGHKARCFL 320
>sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|98478|pir||E38447 oligopeptide transport ATP-binding
protein oppF - Bacillus subtilis
>gi|143608|gb|AAA62692.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 308
Score = 203 bits (512), Expect = 2e-51
Identities = 122/313 (38%), Positives = 182/313 (57%), Gaps = 22/313 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLE+++L + F + V+AVD +SF I +GE + LVGESG GK+T G+ I+RL
Sbjct: 8 LLEIKHLKQHFVTPR---GTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 64
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
T G +LF G+++ ++ + RK+Q +FQDP+AS NP V + D +
Sbjct: 65 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 124
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
++ER + + + LE VGLN E +YPH+ SGGQ QRI IARAL + P +IADE +S
Sbjct: 125 TKKERMQRVHELLETVGLN-KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISA 183
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LD S + V+NL+ E + + G + LFI HDL++ YISD +MY G +VE+ ++++
Sbjct: 184 LDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYE 243
Query: 242 NPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD-VCFKIRP 300
NPLHPYTK LL ++P +P+ E +V + +Y P + KD + R
Sbjct: 244 NPLHPYTKSLLSAIP---------LPDPDYERNRVRQ----KYDPSVHQLKDGETMEFR- 289
Query: 301 TLIEVEKNHWVAC 313
EV+ H+V C
Sbjct: 290 ---EVKPGHFVMC 299
>gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis]
>gi|2633501|emb|CAB13004.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 305
Score = 203 bits (512), Expect = 2e-51
Identities = 122/313 (38%), Positives = 182/313 (57%), Gaps = 22/313 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLE+++L + F + V+AVD +SF I +GE + LVGESG GK+T G+ I+RL
Sbjct: 5 LLEIKHLKQHFVTPR---GTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 61
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
T G +LF G+++ ++ + RK+Q +FQDP+AS NP V + D +
Sbjct: 62 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 121
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
++ER + + + LE VGLN E +YPH+ SGGQ QRI IARAL + P +IADE +S
Sbjct: 122 TKKERMQRVHELLETVGLN-KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LD S + V+NL+ E + + G + LFI HDL++ YISD +MY G +VE+ ++++
Sbjct: 181 LDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYE 240
Query: 242 NPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD-VCFKIRP 300
NPLHPYTK LL ++P +P+ E +V + +Y P + KD + R
Sbjct: 241 NPLHPYTKSLLSAIP---------LPDPDYERNRVRQ----KYDPSVHQLKDGETMEFR- 286
Query: 301 TLIEVEKNHWVAC 313
EV+ H+V C
Sbjct: 287 ---EVKPGHFVMC 296
>emb|CAC12447.1| (AL445067) probable dipeptide transport system, ATP-binding protein
dppF [Thermoplasma acidophilum]
Length = 248
Score = 203 bits (512), Expect = 2e-51
Identities = 107/252 (42%), Positives = 161/252 (63%), Gaps = 19/252 (7%)
Query: 14 SGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDI 73
+GL+G + A++ V+ T+ + EI+ LVG SGSGK+T+ ++++ L P++G+++FEG+D+
Sbjct: 3 TGLMGTQDITALNNVNITLYQKEILGLVGASGSGKSTLARVLVLLYRPSTGKVVFEGRDV 62
Query: 74 MKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVD-------KVFHMIFDSYFPDLGREER 126
+ +L+ Y VQ VFQDP+AS +P H + ++ H R
Sbjct: 63 TNYRGMKLREYR-SDVQMVFQDPYASLDPYHTISWHIRRPLRIHHY----------RGNI 111
Query: 127 EEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDAS 185
+E ID+ LE V L+P S R K+PHQ+SGGQ QR+ +ARAL L+P++LIADE VSMLD S
Sbjct: 112 DERIDELLEMVKLDPPSYFRDKFPHQISGGQRQRVYLARALALEPKVLIADEPVSMLDVS 171
Query: 186 TRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLH 245
RID+L LL R+ G S+++ITHDL I+D +++ G IVE G+T+ V NP
Sbjct: 172 LRIDILELLSRIREDLGISIIYITHDLNTVSMITDRIYVLHNGEIVEEGQTDDVLSNPRD 231
Query: 246 PYTKMLLESVPD 257
YT+ L+E+ PD
Sbjct: 232 DYTRSLIEAAPD 243
>gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding; DppF
[Halobacterium sp. NRC-1]
Length = 943
Score = 203 bits (511), Expect = 2e-51
Identities = 124/334 (37%), Positives = 187/334 (55%), Gaps = 24/334 (7%)
Query: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDGVSFTINEGEIVSLVGESGSGKTTIGK 53
LL + L K F+ ++GG Q V+AVDGV + EGE + LVGESG GK+T G+
Sbjct: 504 LLSSRGLEKHFSRADGWLDSMLGGDQEPVKAVDGVDLDVYEGETLGLVGESGCGKSTTGR 563
Query: 54 LILRLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHM 112
ILRL+ PT GR++F G D+ + EL+ +Q +FQDP +S +P + D +
Sbjct: 564 SILRLVEPTDGRVVFAGDDVTDLNDDELRATR-TDMQMIFQDPLSSLDPRQSIGDTILEP 622
Query: 113 IFDSYFP-----DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALL 167
+ P R+ R + + ++ VGL+PS+ +YPH+LSGGQ QR+ IARAL
Sbjct: 623 LQIHDLPANPGAQSTRQARRDRVIDLMDAVGLDPSQY-DRYPHELSGGQRQRVGIARALA 681
Query: 168 LKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYR 227
+ P ++ADE VS LD S + +LNLL + +D++ + LFI HDL++ +I D +MY
Sbjct: 682 VDPDFIVADEPVSALDVSVQAQILNLLEDLQDEFDLTYLFIAHDLSVVRHICDRIAVMYL 741
Query: 228 GTIVEMGETEKVFHNPLHPYTKMLLESVPDLN--VKWEFKGIEPEKEEGKVWKIKGCRYA 285
G IVE +T ++F P HPYTK LL S+PD + + + I + GCR+
Sbjct: 742 GKIVETAQTAQLFSTPKHPYTKSLLSSIPDPDPLATTDDRIILEGDVPSPIDPPSGCRFR 801
Query: 286 PRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQSS 319
RCP I P +++E++ + A ++ S
Sbjct: 802 TRCPSV------IPPADLDIEQDAFRAVMDFRES 829
Score = 139 bits (347), Expect = 4e-32
Identities = 87/225 (38%), Positives = 121/225 (53%), Gaps = 25/225 (11%)
Query: 92 VFQDPFASFNPLHQV-DKVFHMI---------FDSYFPDL------GREEREEMID--KA 133
+FQDP S NP V ++V + DS+ L G + + + D
Sbjct: 234 IFQDPMTSLNPSLTVGEQVAESLRLHRYGEQPTDSWLNGLRAAISRGDTDEQVVADVVDV 293
Query: 134 LEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLN 192
L+ VG+ E R +YPH+ SGG QR+LIA AL +PRLLIADE + LD + + +L+
Sbjct: 294 LDAVGIPEPETRLDEYPHEFSGGMRQRVLIAIALACRPRLLIADEPTTALDVTIQAQILD 353
Query: 193 LLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLL 252
+ + +D++G SVLFITHDL + D +MY G IVE G E++FHNP HPYT LL
Sbjct: 354 RISDLQDEFGMSVLFITHDLGVVAETCDRVAVMYAGEIVEEGPVEEIFHNPSHPYTYALL 413
Query: 253 ESVP--DLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
ES+P D + +G P+ + GC + RCP A D C
Sbjct: 414 ESIPRDDADRLHPIEGNVPD----LIDLPSGCHFEARCPWASDAC 454
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 203 bits (510), Expect = 3e-51
Identities = 118/326 (36%), Positives = 191/326 (58%), Gaps = 16/326 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M+LEV NL I+ G ++AV+ VSF + +GEI+ ++GESGSGKTT+ ILR +
Sbjct: 44 MILEVHNLNVIYDEG--NSRIIKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIR 101
Query: 61 PT----SGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
P SG+++F G DI + E + ++ + V Q + NP+ + ++F+ S
Sbjct: 102 PPGKIISGKVIFNGMDIFSMTIDEFRKLLWKDISYVPQASQNALNPVLPISEIFYHEAIS 161
Query: 117 YFPDLGREEREEMIDKA---LEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
+ G +++ +I++A L+ VGL+P+ V YP QLSGG QR++IA +LLL P+L+
Sbjct: 162 H----GEADKKRVIERASELLKLVGLDPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLI 217
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
+ DE S LD + +L L+ + G +++++THD+ I++ ++MY+G ++E
Sbjct: 218 LMDEPTSALDMLNQELLLKLIKNINQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEE 277
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
G+TE++ +PL+PYT +L+ S+P L K E K I +E V K KGC + RC KA
Sbjct: 278 GKTEEIIKSPLNPYTSLLVSSIPSL--KGEVKVINVPLDEPLVSKEKGCPFLARCSKAFG 335
Query: 294 VCFKIRPTLIEVEKNHWVACHLYQSS 319
C + P I + + V CHLY S+
Sbjct: 336 RCKEELPE-IRLVYDRKVRCHLYGSN 360
>emb|CAA39791.1| (X56347) OppF [Bacillus subtilis]
Length = 307
Score = 202 bits (509), Expect = 4e-51
Identities = 109/255 (42%), Positives = 160/255 (62%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLE+++L + F + V+AVD +SF I +GE + LVGESG GK+T G+ I+RL
Sbjct: 8 LLEIKHLKQHFVTPR---GTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA 64
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
T G +LF G+++ ++ + RK+Q +FQDP+AS NP V + D +
Sbjct: 65 TDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADIIAEGLDIHKLAK 124
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
++ER + + + LE VGLN E +YPH+ SGGQ QRI IARAL + P +IADE +S
Sbjct: 125 TKKERMQRVHELLETVGLN-KEHANRYPHEFSGGQRQRIGIARALAVDPEFIIADEPISA 183
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LD S + V+NL+ E + + G + LFI HDL++ YISD +MY G +VE+ ++++
Sbjct: 184 LDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPADELYE 243
Query: 242 NPLHPYTKMLLESVP 256
NPLHPYTK LL ++P
Sbjct: 244 NPLHPYTKSLLSAIP 258
>emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 307
Score = 202 bits (509), Expect = 4e-51
Identities = 117/255 (45%), Positives = 159/255 (61%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
L+EV++L F G + AV +F I +GE SLVGESGSGKTTIG+ I+ L
Sbjct: 5 LVEVKDLEISFGEGK---KKFGAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDT 61
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
+SG+IL++GK I K RK+Q +FQDP AS N VD + ++
Sbjct: 62 SSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFK 121
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
EER+E I + EVGL SE +YPH+ SGGQ QRI IARAL++ P +IADE +S
Sbjct: 122 TEEERKEKIKNMMAEVGLL-SEHLTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LD S R VLNLL + + G + LFI HDL++ +ISD ++++G IVE+ ETE++F+
Sbjct: 181 LDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN 240
Query: 242 NPLHPYTKMLLESVP 256
NP+HPYT+ LL +VP
Sbjct: 241 NPIHPYTQSLLSAVP 255
>gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus pyogenes]
Length = 307
Score = 202 bits (508), Expect = 5e-51
Identities = 117/255 (45%), Positives = 159/255 (61%), Gaps = 4/255 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
L+EV++L F G + AV +F I +GE SLVGESGSGKTTIG+ I+ L
Sbjct: 5 LVEVKDLEISFGEGK---KKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDT 61
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
+SG+IL++GK I K RK+Q +FQDP AS N VD + ++
Sbjct: 62 SSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFK 121
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
EER+E I + EVGL SE +YPH+ SGGQ QRI IARAL++ P +IADE +S
Sbjct: 122 TEEERKEKIKNMMAEVGLL-SEHLTRYPHEFSGGQRQRIGIARALVMNPEFVIADEPISA 180
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LD S R VLNLL + + G + LFI HDL++ +ISD ++++G IVE+ ETE++F+
Sbjct: 181 LDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN 240
Query: 242 NPLHPYTKMLLESVP 256
NP+HPYT+ LL +VP
Sbjct: 241 NPIHPYTQSLLSAVP 255
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 201 bits (507), Expect = 7e-51
Identities = 120/326 (36%), Positives = 183/326 (55%), Gaps = 18/326 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV NL F + AVDGV F I++GE V+LVGESGSGK+ I+ L+
Sbjct: 4 LLEVNNLKTYFFRKK---EPIPAVDGVDFHISKGETVALVGESGSGKSITSLSIMGLVQS 60
Query: 62 TSGRIL-----FEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
+ G+I+ E KD+ F++ + +V +FQ+P S NP+ + + +
Sbjct: 61 SGGKIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGEQITEVL-I 119
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
Y ++ ++E + + L+ VG + +E + +YPH+LSGG QR++IA AL P+LLIA
Sbjct: 120 YHKNMKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSCNPKLLIA 179
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + VL L+ + K+ TS+L ITHDL + +D I+MY G +VE
Sbjct: 180 DEPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYCGQVVENAT 239
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWE----FKGIEPEKEEGKVWKIKGCRYAPRCPKA 291
+ +F PLHPYT+ LL S+P ++ + + KG P + GCR+APRCPKA
Sbjct: 240 VDDLFLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSVPTPDN----LPPGCRFAPRCPKA 295
Query: 292 KDVCFKIRPTLIEVEKNHWVACHLYQ 317
D C+ +P+L+ + V C LY+
Sbjct: 296 MDKCWTNQPSLLTHKSGRTVRCFLYE 321
>gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 201 bits (506), Expect = 9e-51
Identities = 109/284 (38%), Positives = 174/284 (60%), Gaps = 8/284 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
V+A+DGVSF + G+ +++VGESG GK+T+G+L+ + PT G + ++G+D++K +
Sbjct: 35 VKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQ 94
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDSYFPDLGREEREEMIDKALEEVGL 139
K +K+Q VFQ+P+ S NP +V ++ ++ ++ L +E+R E + +VGL
Sbjct: 95 KLRR-QKIQIVFQNPYGSLNPRKKVGQILEEPLLINT---SLSKEQRREKALSMMAKVGL 150
Query: 140 NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRD 199
+E +YPH SGGQ QRI IAR L+L P ++IADE VS LD S R VLNL+ + +
Sbjct: 151 K-TEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQ 209
Query: 200 KYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLN 259
+ G S +FI+HDL++ +I+D ++MY G VE G +++F+NP HPYT+ LL + P LN
Sbjct: 210 ELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLN 269
Query: 260 VKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKDVCFKIRPTL 302
+ I+ E + GC + RC + C +++P L
Sbjct: 270 PDDRRERIKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQL 313
>sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1073370|pir||S47762 dipeptide transport protein dppF
- Escherichia coli >gi|466679|gb|AAB18518.1| (U00039)
was dppE [Escherichia coli] >gi|1789962|gb|AAC76565.1|
(AE000431) putative ATP-binding component of dipeptide
transport system [Escherichia coli K12]
Length = 334
Score = 201 bits (506), Expect = 9e-51
Identities = 109/284 (38%), Positives = 174/284 (60%), Gaps = 8/284 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKEL 81
V+A+DGVSF + G+ +++VGESG GK+T+G+L+ + PT G + ++G+D++K +
Sbjct: 35 VKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQ 94
Query: 82 KTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDSYFPDLGREEREEMIDKALEEVGL 139
K +K+Q VFQ+P+ S NP +V ++ ++ ++ L +E+R E + +VGL
Sbjct: 95 KLRR-QKIQIVFQNPYGSLNPRKKVGQILEEPLLINT---SLSKEQRREKALSMMAKVGL 150
Query: 140 NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRD 199
+E +YPH SGGQ QRI IAR L+L P ++IADE VS LD S R VLNL+ + +
Sbjct: 151 K-TEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQ 209
Query: 200 KYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLN 259
+ G S +FI+HDL++ +I+D ++MY G VE G +++F+NP HPYT+ LL + P LN
Sbjct: 210 ELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLN 269
Query: 260 VKWEFKGIEPEKE-EGKVWKIKGCRYAPRCPKAKDVCFKIRPTL 302
+ I+ E + GC + RC + C +++P L
Sbjct: 270 PDDRRERIKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQL 313
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 201 bits (506), Expect = 9e-51
Identities = 119/328 (36%), Positives = 179/328 (54%), Gaps = 27/328 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQV-RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
+LL+V++L F G V RA+ GV+F + GE++ +VGESG GK+ ILRLL
Sbjct: 11 LLLDVRDLETHF----YGEESVTRALGGVNFHVKSGEMLGIVGESGCGKSVTALSILRLL 66
Query: 60 TPTS-----GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIF 114
+ G ++F+G+++++ S+++++ ++ +FQDP S +P+H V +
Sbjct: 67 PKQTAKTVGGEVIFKGRNLLELSERQMREVRGNRIAMIFQDPMTSLSPVHTVGRQIAEAV 126
Query: 115 DSYFPDLGREEREEMIDKALEEVGL----NPSEVRGKYPHQLSGGQLQRILIARALLLKP 170
+ GR R E ++KALE + L +P YPH++SGG QR +IA AL P
Sbjct: 127 QIH----GRVSRAEALEKALEMLRLVRIADPERRLNNYPHEMSGGMRQRAMIAMALACSP 182
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
LLIADE + LD + + +L L+ + +D+ GT+V+FITHDL + I+MY G I
Sbjct: 183 ELLIADEPTTALDVTIQAQILRLIVDLKDRMGTAVMFITHDLGVVAETCQRVIVMYAGRI 242
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPD-----LNVKWEFKGIEPEKEEGKVWKIKGCRYA 285
VE +F P HPYT+ L+ SVPD + E G+ P E V GC +A
Sbjct: 243 VEQASVTDLFARPTHPYTRALMNSVPDRRRGRQSRLPEIPGVVPSLREPLV----GCSFA 298
Query: 286 PRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
RCP A VC + P L E++ H AC
Sbjct: 299 ERCPFAIGVCREKMPVLSEIQPGHAAAC 326
>pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376983|gb|AAD18821.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189002|gb|AAF37954.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979054|dbj|BAA98889.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 200 bits (504), Expect = 2e-50
Identities = 117/303 (38%), Positives = 168/303 (54%), Gaps = 9/303 (2%)
Query: 21 QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT----PTSGRILFEGKDIMKF 76
Q V +SFTINEG+ ++++GESGSGK+ ILRLL SG++ F+G +++
Sbjct: 22 QYPIVQSLSFTINEGQTLAIIGESGSGKSVSAHAILRLLPCPPFSVSGQVNFQGHNLLTA 81
Query: 77 SKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEE 136
S+ K ++ +FQ+P AS NP+ +++ F I ++ +E+M+ ALEE
Sbjct: 82 SRSIQKKIIGTEISMIFQNPQASLNPVFTIEQQFREIIHTHLALTAEVAKEKML-YALEE 140
Query: 137 VGLN-PSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLG 195
G + P YPHQLSGG LQRI IA ALL P+LLIADE + LD S + +L LL
Sbjct: 141 TGFHDPRLCLNLYPHQLSGGMLQRICIAMALLCSPKLLIADEPTTALDVSVQYQILQLLK 200
Query: 196 EFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESV 255
+ K G S+L ITH++ + +D +++Y G +VE ++FHNP HPYT+ LL S
Sbjct: 201 TLQKKTGMSLLIITHNMGVVAETADDVLVLYAGRMVECAPAVQMFHNPSHPYTRDLLASR 260
Query: 256 PDLNVK--WEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
P L + F I + + GCRY PRC K + C P + V + H V C
Sbjct: 261 PSLQPQQLGSFNPIPGQPPHYTAFP-SGCRYHPRCSKILNRCSAEAPEIYPVREGHKVRC 319
Query: 314 HLY 316
LY
Sbjct: 320 WLY 322
>gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T45532 agaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665708|gb|AAB88468.1| (AF242881) agaD
[Agrobacterium tumefaciens]
Length = 569
Score = 200 bits (503), Expect = 2e-50
Identities = 115/260 (44%), Positives = 163/260 (62%), Gaps = 8/260 (3%)
Query: 2 LLEVQNLTKIF---TSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
LL ++NLTK F S L + RAVD VS I V LVGESG GK+T+ +L++RL
Sbjct: 304 LLTIRNLTKTFWLRESPLAPPKEFRAVDDVSLDIPARSTVGLVGESGCGKSTLSRLVMRL 363
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
+ P SG I F+G D+ ++ L+ + + VFQ+P+ S NP V + D +
Sbjct: 364 MEPNSGTIEFDGIDLTSLDRERLR-HARQNFALVFQNPYGSLNPRQTVTDLIAAPVDIHA 422
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
GR+ RE ++ K L+ VGL P + +YPH+ SGGQ QRI+IARAL L+P+LLI DEA
Sbjct: 423 K--GRD-REAIVAKLLDAVGL-PRDAMRRYPHEFSGGQRQRIVIARALALRPKLLICDEA 478
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
VS LD S + VLNLL + +D++ + LFITHD+++ +ISD+ +M +G IVE G E+
Sbjct: 479 VSALDVSVQAQVLNLLQDLQDEFDLTYLFITHDMSVVRHISDTIAVMQKGRIVETGTAEE 538
Query: 239 VFHNPLHPYTKMLLESVPDL 258
VF +P YT+ LL +VP +
Sbjct: 539 VFDHPKDEYTRTLLRAVPKI 558
Score = 163 bits (409), Expect = 2e-39
Identities = 104/317 (32%), Positives = 168/317 (52%), Gaps = 13/317 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L++ NLT F +G G + AV+ VS +++ GEI+ LVGESGSGKT + + LL P
Sbjct: 6 VLKIDNLTVAFKTG--DGLRT-AVNSVSLSLHSGEILGLVGESGSGKTILSLAAMGLLPP 62
Query: 62 TS----GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDK--VFHMIFD 115
+ G + F G+D++ L+ +++ +FQDP AS +P+ V ++
Sbjct: 63 NAVVAGGTVKFFGEDLLTARPDVLRKLRGKRIAMIFQDPMASLDPVFTCGSQIVESILLH 122
Query: 116 SYFPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLI 174
P R + +D L +VG+ +P G YPH+LSGGQ QR++IA A+ KP ++I
Sbjct: 123 ERVPR--RNAHQRALD-LLTKVGIVDPERCMGSYPHELSGGQCQRVMIAMAVACKPDVII 179
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
ADE + LD + + VLNLL + G ++L ITHDL + Y ++D ++YRG ++E
Sbjct: 180 ADEPTTALDVTVQKQVLNLLQNLNQEIGAAILLITHDLGVIYEVADRVAVIYRGDMMEEA 239
Query: 235 ETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
+T +F P YTK L+ S+P ++ + + E G + I R A +
Sbjct: 240 KTTDLFAAPKSAYTKALIASMPSVSTPKTRLPVIGKDESGAIASIVDTRPTSANEIAPER 299
Query: 295 CFKIRPTLIEVEKNHWV 311
+ T+ + K W+
Sbjct: 300 SRQTLLTIRNLTKTFWL 316
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 200 bits (503), Expect = 2e-50
Identities = 130/331 (39%), Positives = 175/331 (52%), Gaps = 22/331 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL V+ L F G G RAVDGV I GEIV+LVGESG GKTT+ + +L L+ P
Sbjct: 32 LLSVRGLHVTFP-GRRGAAAARAVDGVDLDIRRGEIVALVGESGCGKTTLARSLLGLVRP 90
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
T GR+ F+G + +S + LK Y R+ Q V QDP S NP H V + ++ +
Sbjct: 91 TGGRVTFDGAPL-GYSARALKAYR-RRAQLVLQDPSGSLNPRHTV---YDIVAEGLRIHG 145
Query: 122 GREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ + +AL GL P E +YPH+LSGGQ QR++IA AL+L+P LL+ADE V+
Sbjct: 146 HAGDERTAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLQPELLVADEPVA 205
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LDAS R ++L LL R + G S L +THDL L + I+D +MY G IVE G E+V
Sbjct: 206 SLDASVRGEILALLLRLRTELGLSALVVTHDLGLAWNIADRVAVMYLGRIVETGAVEQVL 265
Query: 241 HNPLHPYTKMLLESVPDL-NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCP---------- 289
P HPYT+ LL +P+ G P+ + GCR+ RCP
Sbjct: 266 TAPRHPYTQALLSVLPEAPGAPVVLTGEPPDPS----YIPGGCRFHVRCPVLASGEAVRA 321
Query: 290 KAKDVCFKIRPTLIEVEKNHWVACHLYQSSR 320
D C ++ VACH ++ R
Sbjct: 322 GVADACRNEELEILRGGDESQVACHWARAER 352
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 199 bits (500), Expect = 5e-50
Identities = 116/328 (35%), Positives = 189/328 (57%), Gaps = 19/328 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L+V++LT F + G V+A++ VSF + +GE +LVGE+G GK+ + I +L+
Sbjct: 8 ILQVRDLTVHFYT--YAGI-VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
Query: 62 ----TSGRILFEGKD-----IMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHM 112
G++L+ +D ++K S++E++ ++ +FQDP +S +PL+ V +
Sbjct: 65 PGRIVGGQVLYYREDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHSSLDPLYTVG---YQ 121
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGL----NPSEVRGKYPHQLSGGQLQRILIARALLL 168
I ++ + +E I KA++ + +P YPH+LSGG QR++I L
Sbjct: 122 IAEAMEVHGKIKNIKEGIKKAVDILKSVLIPDPQRRVNNYPHELSGGMKQRVVIGIGLSN 181
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG 228
PR+LIADE + LD + + +L+L+ + ++KY +V+ ITH+L + +D +MY G
Sbjct: 182 NPRILIADEPTTALDVTVQAQILDLINQLKEKYKATVILITHNLGVVAETADRVAVMYAG 241
Query: 229 TIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRC 288
IVE+G +++F NPLHPYT+ LL +VP+ K E P + GCR+ PRC
Sbjct: 242 KIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLINPPSGCRFHPRC 301
Query: 289 PKAKDVCFKIRPTLIEVEKNHWVACHLY 316
PKA D+C + P L E+E H+VACHLY
Sbjct: 302 PKAMDICKQKVPELKEIEPGHFVACHLY 329
>dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 308
Score = 198 bits (499), Expect = 6e-50
Identities = 109/243 (44%), Positives = 157/243 (63%), Gaps = 4/243 (1%)
Query: 19 GYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSK 78
GY +AVDGVS + EG+ LVGESGSGKTT G+ I+ L T+G ILF+G+DI K K
Sbjct: 25 GYN-KAVDGVSLELEEGQTYGLVGESGSGKTTTGRAIIGLNKLTAGHILFDGQDITKQLK 83
Query: 79 KELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVG 138
K+ K R +Q +FQDP++S NP +V + + F L + E + +++ LE VG
Sbjct: 84 KK-KNDIRRNIQMIFQDPYSSLNPKKRVLDIIAEPLRN-FEKLSKLEERKRVEELLEIVG 141
Query: 139 LNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFR 198
L+ + KYPH+ SGGQ QRI IARA+ LKP+L+IADE VS LD S + VLN + + +
Sbjct: 142 LSRESIF-KYPHEFSGGQRQRIGIARAIALKPKLIIADEPVSALDVSVQAQVLNFMKDIQ 200
Query: 199 DKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDL 258
++ + LFI+HDL + ++ D IMYRG +VE G + ++ +P H YTK L+ ++PD+
Sbjct: 201 KEFNLTYLFISHDLGIIRHMCDRIGIMYRGRLVEEGVRDDIYESPQHIYTKRLIAAIPDM 260
Query: 259 NVK 261
+ K
Sbjct: 261 DPK 263
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 198 bits (498), Expect = 8e-50
Identities = 117/328 (35%), Positives = 189/328 (56%), Gaps = 19/328 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L+V+NLT F + G V+A++ VSF + +GE +LVGE+G GK+ + I +L+
Sbjct: 8 ILQVRNLTVHFYT--YAGI-VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
Query: 62 ----TSGRILF---EGK--DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHM 112
G++L+ +G D++K S++E++ ++ +FQDP AS +PL+ V +
Sbjct: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG---YQ 121
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGL----NPSEVRGKYPHQLSGGQLQRILIARALLL 168
I ++ + +E I KA++ + +P+ YPH+LSGG QR++I +
Sbjct: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG 228
PR+LIADE + LD + + +L+LL + ++KY +V+ ITH+L + +D +MY G
Sbjct: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
Query: 229 TIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRC 288
IVE+G +++F NPLHPYT+ LL +VP+ K E P + GCR+ PRC
Sbjct: 242 KIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRC 301
Query: 289 PKAKDVCFKIRPTLIEVEKNHWVACHLY 316
PK +C + P L E+E H+VACHLY
Sbjct: 302 PKVMSICKEKVPELKEIEPGHFVACHLY 329
>pir||F71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329143|gb|AAC68285.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 321
Score = 196 bits (494), Expect = 2e-49
Identities = 110/321 (34%), Positives = 175/321 (54%), Gaps = 10/321 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+V+NL+ + AVD +SF + G+ ++++GESGSGK+ + +++LL
Sbjct: 6 LLQVKNLSVSLNRNRVS---FLAVDSLSFDVFPGQTLAIIGESGSGKSITAQSLMQLLPE 62
Query: 62 T----SGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
SG LF ++++ K + K+ +FQ+P ASF+P+ +++ FH + ++
Sbjct: 63 ENFSLSGEALFNKENLLDRKNTNAKVLFGSKISMIFQNPLASFDPVFTIEQQFHEVIRTH 122
Query: 118 FPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+ E+M+ L E G +P YPH+LSGG LQR+ IA LL P LLIAD
Sbjct: 123 LGISNKMAHEQML-AVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIAD 181
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E + LD S + +L LL + K G S+L ITHD+ + ++D ++Y G + E
Sbjct: 182 EPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHDMGVVAEMADDVFVLYAGRMAEYSSV 241
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCF 296
+++FH+P HPYT+ LL S P + F I + KGC Y+PRC KA+ +CF
Sbjct: 242 QEIFHSPAHPYTEDLLASRPSQYRQQTFVPIAGQPPHYTSLP-KGCCYSPRCRKAQPICF 300
Query: 297 KIRPTLIEVEKNHWVACHLYQ 317
+ P + + +H V C LY+
Sbjct: 301 EKSPDSLSLNDHHRVRCWLYE 321
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 196 bits (494), Expect = 2e-49
Identities = 114/329 (34%), Positives = 186/329 (55%), Gaps = 13/329 (3%)
Query: 2 LLEVQNL-TKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LEV++L T FT ++V+AVDGV+F++ +G+ + +VGESGSGK+ IL+L+
Sbjct: 12 ILEVRDLRTSFFTEA----FEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQ 67
Query: 61 P----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
G I F+G++++ ++ ++ ++ +FQ+P S NP++ V + F
Sbjct: 68 EPGKVVGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRI 127
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ LG++E + L+ VG+ E R +YPH+LSGG QR++IA AL P LLIA
Sbjct: 128 H-EKLGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIA 186
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + +L L+ + +D+ G S++ ITHDL + D +MY G +VE +
Sbjct: 187 DEPTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYAD 246
Query: 236 TEKVFHNPLHPYTKMLLESVP--DLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
+ +F NP HPYT LL S+P D++++ E + +GCR+APRCP A D
Sbjct: 247 VKTLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASD 306
Query: 294 VCFKIRPTLIEVEKNHWVACHLYQSSREG 322
+C + P L E + + C +Y +G
Sbjct: 307 ICKERLPDLETDENGNQIRCWVYSEQWDG 335
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 195 bits (491), Expect = 5e-49
Identities = 106/303 (34%), Positives = 174/303 (56%), Gaps = 8/303 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP----TSGRILFEGKDIMKFS 77
VRA + VSF + GE+ L GESG GK+T+ ++RL P T G ++F G+DI+K+S
Sbjct: 22 VRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKYS 81
Query: 78 KKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEV 137
+ ++ + ++++ VFQ + NP+ +++ F + + ++ RE+ + + LE V
Sbjct: 82 DERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRH-TNMTREQAKRRAEGLLEIV 140
Query: 138 GLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEF 197
++PS + YPHQ SGG QR++IA AL L P+++I DE + LD + ++L +
Sbjct: 141 DIHPSRLND-YPHQFSGGMRQRLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYAL 199
Query: 198 RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPD 257
++++G S+LFITHDL+L SD IMY G ++E+ ++++ P HPYTK L S P
Sbjct: 200 KEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQILETPYHPYTKGLGSSFPP 259
Query: 258 L-NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLY 316
L K + GI P + +GCR+ RC + + C K+ L ++E + CHLY
Sbjct: 260 LTGPKTKLTGI-PGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLY 318
Query: 317 QSS 319
S
Sbjct: 319 TQS 321
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 194 bits (489), Expect = 9e-49
Identities = 113/322 (35%), Positives = 183/322 (56%), Gaps = 14/322 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV++L F + +V+AV GV+F + +GE +++VGESGSGK+ K ++ L+
Sbjct: 4 LLEVKDLQVSFDTH---AGEVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPN 60
Query: 62 TSGRI-----LFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
GRI +FEG+D+ K ++KE++ + + +FQDP S NP + + I +
Sbjct: 61 PPGRIKNGEIVFEGRDLTKLTEKEMQQVRGKDIAMIFQDPMTSLNPTMTIG---NQIMEG 117
Query: 117 YFPDLG--REEREEMIDKALEEVGLNPSEVRGK-YPHQLSGGQLQRILIARALLLKPRLL 173
G + + ++ + ++ VG+ E R K YPHQ SGG QR++IA AL P+LL
Sbjct: 118 LIKHQGMSKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLL 177
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
IADE + LD + + +L L+ + + K +++FITHDL + ++D +MY G +VE+
Sbjct: 178 IADEPTTALDVTIQAQILELMKDIQQKTEAAIIFITHDLGVVANVADRVAVMYAGKVVEI 237
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
G +++F+NP HPYT L+ S+P L+ E P + KG +APR P+A
Sbjct: 238 GTVDEIFYNPKHPYTWGLIASMPSLDGSEEELYAIPGTPPDLLKPPKGDAFAPRNPQALK 297
Query: 294 VCFKIRPTLIEVEKNHWVACHL 315
+ F++ P L +V H+ A L
Sbjct: 298 IDFEMDPPLFKVSDTHYAATWL 319
>pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190098|gb|AAF38947.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 321
Score = 194 bits (488), Expect = 1e-48
Identities = 112/321 (34%), Positives = 171/321 (52%), Gaps = 10/321 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+V+NL+ + V+ +SF + G+ ++++GESGSGK+ + +++LL
Sbjct: 6 LLQVKNLSVSLNRNTVS---FPVVEDLSFNVFPGQTLAIIGESGSGKSITAQSLMQLLPE 62
Query: 62 T----SGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
SG ++++ KT + K+ +FQ+P ASF+P+ +++ FH + ++
Sbjct: 63 EYFSISGEAFLHKENLLDRKNLLSKTLFGSKMAMIFQNPLASFDPVFTIEQQFHEVIRTH 122
Query: 118 FPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
DL ++ E I L E G +P YPH+LSGG LQR+ IA LL P LLIAD
Sbjct: 123 L-DLTKKVAHEQIVTVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIAD 181
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E + LD S + +L LL + K G S+L ITHD+ + ++D ++Y G + E
Sbjct: 182 EPTTALDVSVQYQILQLLKTLQKKTGMSLLVITHDMGVVAEMADDVFVLYAGRMAEYSSV 241
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCF 296
+ +FH+P HPYTK LL S P K F I KGC Y+PRC KA +C+
Sbjct: 242 QDIFHSPAHPYTKDLLASRPSQYKKQTFVPISGHPPHYTNLP-KGCCYSPRCQKALPICY 300
Query: 297 KIRPTLIEVEKNHWVACHLYQ 317
K P I + +H V C LY+
Sbjct: 301 KQSPHAISLNDHHHVRCWLYE 321
>emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 316
Score = 194 bits (487), Expect = 2e-48
Identities = 105/262 (40%), Positives = 162/262 (61%), Gaps = 10/262 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLE+ L K F G + AVD VS + EGE ++LVGESG GKTT+ +L+L LL P
Sbjct: 25 LLELDGLRKEFG----GRHPNVAVDDVSLEVREGETMALVGESGCGKTTLTRLLLGLLEP 80
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
T+G + F+G+D+ + +L+ R++Q V QDP++S NP ++ + ++ P+
Sbjct: 81 TAGSVRFDGQDLAALTASQLRGVR-RQMQVVLQDPYSSMNPRMRITDIVAEPLVTHDPEA 139
Query: 122 ----GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
R + + + LE VGL+ ++ +YPH+ SGGQ QR+ IARAL L PRLL+ DE
Sbjct: 140 RGRRARARNRQRVGELLEAVGLDAG-IQDRYPHEFSGGQRQRVSIARALALHPRLLVLDE 198
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
S LD S + VL+LL + + + G + +F++H+LA+ ++D +M RG++VE+GE
Sbjct: 199 PTSALDVSVQATVLDLLADLQQRLGLTYVFVSHNLAVVAQVADRVAVMSRGSLVEVGEAA 258
Query: 238 KVFHNPLHPYTKMLLESVPDLN 259
V P HPYT+ LL++VP L+
Sbjct: 259 AVLRTPRHPYTRQLLDAVPVLD 280
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 193 bits (486), Expect = 2e-48
Identities = 130/384 (33%), Positives = 186/384 (47%), Gaps = 82/384 (21%)
Query: 8 LTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRIL 67
+ K F I GY V+AVD +SF++ +G+ +LVGESG GKTT K ILRL PT+GR++
Sbjct: 15 IRKGFLVKKIVGY-VKAVDDISFSVEKGKTFALVGESGCGKTTTAKTILRLTNPTAGRVV 73
Query: 68 FEGKDIMKF--SKKELKTYYYRKVQAVFQDPFASFNP------LHQVDKVFHMIFDSYFP 119
+G D + +++ + Y +F++ +P L VDK + IF F
Sbjct: 74 IDGDDTTYYFMKRRDAENYLETTYVDIFREMREKLSPDQIVDVLEDVDKKYAEIF---FK 130
Query: 120 DLGREEREEMIDKALEEV--------------------GLNPSEVRG------------- 146
+ +E E+ L+++ LNP G
Sbjct: 131 E-AKESEEKFYQILLDDIDEKRMKFRRKIQIVFQDPMSSLNPRMTVGDILTEPILFHGLA 189
Query: 147 -------------------------KYPHQLSGGQLQRILIARALLLKPRLLIADEAVSM 181
+YPHQ SGGQ QRI IARA+ + P ++I DE +
Sbjct: 190 KTREEAVDMAKDLLKSVGLKEYHLERYPHQFSGGQRQRIAIARAISINPEIVILDEPTAS 249
Query: 182 LDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFH 241
LD S + V+NL + +++ G + LFI+HDL L +IS IMY G IVEMG T+++F
Sbjct: 250 LDVSVQAQVINLFLKLQEEKGFTYLFISHDLGLVRFISHEVGIMYLGRIVEMGNTDEIFD 309
Query: 242 NPLHPYTKMLLESVPDLNVKWE-------FKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
NPLHPYT+ LL +VP + K E +G P + + GC + PRCP V
Sbjct: 310 NPLHPYTQALLSAVPVPDPKVERTRKRIILRGGVP----SPINRPTGCFFHPRCPYKMPV 365
Query: 295 CFKIRPTLIEVEKNHWVACHLYQS 318
C K P + E+ HWVACHL+ S
Sbjct: 366 CEKEYPVMKEISPGHWVACHLHSS 389
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 193 bits (485), Expect = 3e-48
Identities = 110/323 (34%), Positives = 178/323 (55%), Gaps = 15/323 (4%)
Query: 5 VQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSG 64
V L K+ T +V AVDGVS +++GEI+ +VGESG GK+ I++L+ G
Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64
Query: 65 RIL-----FEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFP 119
+I+ F+G+D+++ S K +K + +FQ+P S NPL + ++
Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124
Query: 120 DLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
+E R++ + LE VG+ E+ +YPHQLSGG QR++IA A+ P++LIADE
Sbjct: 125 MTKQEARKQAVTM-LERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEP 183
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
+ LD + + +L+L+ + + T++L ITHDL + + + ++MY G +VE G+
Sbjct: 184 TTALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRM 243
Query: 239 VFHNPLHPYTKMLLESVPDLNVK----WEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
+ +P HPYTK LL+S+P ++ + + G+ P + G V GCR+A RC A +
Sbjct: 244 ILKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVP--KPGTVG--HGCRFAARCEVAFER 299
Query: 295 CFKIRPTLIEVEKNHWVACHLYQ 317
C P L +V H C LY+
Sbjct: 300 CKTTAPQLQQVATGHQCRCFLYE 322
>pir||C72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981011|gb|AAD35585.1|AE001726_19 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 384
Score = 192 bits (484), Expect = 3e-48
Identities = 140/381 (36%), Positives = 199/381 (51%), Gaps = 75/381 (19%)
Query: 2 LLEVQNLTKIFT--SGL---IGGYQVRAVDGVSFTINEGEIVSLVGESGSGKT------- 49
+L V+NL K F +G+ I G+ V+AVDGVSF+INEGE LVGESG GKT
Sbjct: 5 ILRVENLVKHFPIRAGVFKRIVGW-VKAVDGVSFSINEGETFGLVGESGCGKTTIGMTLL 63
Query: 50 -----TIGKLILR------LLTPTS--------------------------------GRI 66
T G++I+ P S RI
Sbjct: 64 RLYEPTSGRIIVDNEDTTYYFMPRSKAKKYIKQTYLSRFVNMKESDVEKLEGVDREYARI 123
Query: 67 LFEGK--------DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
FE I+ E + + R++Q VFQDP++S NP +V + ++
Sbjct: 124 FFEEAKGSPKKFMSILLDDLPEKRKKFRREMQIVFQDPYSSLNPRLRVKSIVGEGIVTHR 183
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
G+E E+ I + LE+VG+ PS ++PH+ SGGQ QRI IARAL L+P+L++ADEA
Sbjct: 184 IARGKEV-EKRIKEILEDVGI-PSAYVYRFPHEFSGGQRQRIGIARALALEPKLVVADEA 241
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
V+ LD S R ++NL+ + + ++ + +FI+HDLA+ +ISD +MY G +VE+ +
Sbjct: 242 VAALDVSIRSQIINLMEDLQREHKLTYIFISHDLAVVKHISDRIGVMYLGKMVELAPKKD 301
Query: 239 VFHNPLHPYTKMLLES--VPDLNVKWE---FKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
+F PLHPYT L+ + VPD K E KG P + GCR+ RCP AK+
Sbjct: 302 LFEKPLHPYTVALMSAIPVPDPTKKRERIILKGDVP----SPINPPSGCRFHTRCPIAKE 357
Query: 294 VCFKIRPTLIEVEKNHWVACH 314
+C K P EVE+ H+VACH
Sbjct: 358 ICSKEEPAFREVEEGHFVACH 378
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 192 bits (483), Expect = 5e-48
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV++L F + G +V+A+ GV+F +++GE +++VGESGSGK+ + I++L+
Sbjct: 7 LLEVKDLAISFKTY---GGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPM 63
Query: 62 TSG-----RILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
G ILFEGKD++ S+KE++ +++ +FQDP S NP +V K +
Sbjct: 64 PPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFK 123
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ + +E ++ + LE VG+ E R ++PH+ SGG QR++IA AL P+LLIA
Sbjct: 124 H-EKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIA 182
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + +L L+ + + K TS++FITHDL + ++D +MY G IVE G
Sbjct: 183 DEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGT 242
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWE-----FKGIEPEKEEGKVWKIKGCRYAPRCPK 290
+++F++P HPYT LL S+P L E G P+ KG +A R
Sbjct: 243 VDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPP----KGDAFALRSSY 298
Query: 291 AKDVCFKIRPTLIEVEKNHWV 311
A + F+ P + +V H+V
Sbjct: 299 AMKIDFEQEPPMFKVSDTHYV 319
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 192 bits (483), Expect = 5e-48
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV++L F + G +V+A+ GV+F +++GE +++VGESGSGK+ + I++L+
Sbjct: 7 LLEVKDLAISFKTY---GGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPM 63
Query: 62 TSG-----RILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
G ILFEGKD++ S+KE++ +++ +FQDP S NP +V K +
Sbjct: 64 PPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFK 123
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ + +E ++ + LE VG+ E R ++PH+ SGG QR++IA AL P+LLIA
Sbjct: 124 H-EKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIA 182
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + +L L+ + + K TS++FITHDL + ++D +MY G IVE G
Sbjct: 183 DEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGT 242
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWE-----FKGIEPEKEEGKVWKIKGCRYAPRCPK 290
+++F++P HPYT LL S+P L E G P+ KG +A R
Sbjct: 243 VDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPP----KGDAFALRSSY 298
Query: 291 AKDVCFKIRPTLIEVEKNHWV 311
A + F+ P + +V H+V
Sbjct: 299 AMKIDFEQEPPMFKVSDTHYV 319
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 192 bits (483), Expect = 5e-48
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV++L F + G +V+A+ GV+F +++GE +++VGESGSGK+ + I++L+
Sbjct: 7 LLEVKDLAISFKTY---GGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPM 63
Query: 62 TSG-----RILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
G ILFEGKD++ S+KE++ +++ +FQDP S NP +V K +
Sbjct: 64 PPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFK 123
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ + +E ++ + LE VG+ E R ++PH+ SGG QR++IA AL P+LLIA
Sbjct: 124 H-EKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIA 182
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + +L L+ + + K TS++FITHDL + ++D +MY G IVE G
Sbjct: 183 DEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGT 242
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWE-----FKGIEPEKEEGKVWKIKGCRYAPRCPK 290
+++F++P HPYT LL S+P L E G P+ KG +A R
Sbjct: 243 VDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPP----KGDAFALRSSY 298
Query: 291 AKDVCFKIRPTLIEVEKNHWV 311
A + F+ P + +V H+V
Sbjct: 299 AMKIDFEQEPPMFKVSDTHYV 319
>pir||C72720 probable oligopeptide transport ATP-binding protein oppF APE0300 -
Aeropyrum pernix (strain K1) >gi|5103939|dbj|BAA79255.1|
(AP000059) 420aa long hypothetical oligopeptide
transport ATP-binding protein oppF [Aeropyrum pernix]
Length = 420
Score = 191 bits (481), Expect = 8e-48
Identities = 124/328 (37%), Positives = 180/328 (54%), Gaps = 46/328 (14%)
Query: 8 LTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRIL 67
+T + +IG V+AVDGVS ++ +GEI+ +VGESGSGKTT+ K I+ L P +G +
Sbjct: 16 ITTFYLKKVIG--YVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVF 73
Query: 68 FE------------------GKDI----MKFSKKELKTY--YY----------RKVQAVF 93
+ G+++ +K +K +KT+ YY RKVQ V
Sbjct: 74 IDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQ 133
Query: 94 QDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLS 153
QDP++S NP +V ++ + + E + + + LE VGL E +YP++LS
Sbjct: 134 QDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLG-KEFADRYPYELS 192
Query: 154 GGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLA 213
GGQ QR+ IARAL L P++L+ DE S LD S + +L LL E KYG + L ITHD++
Sbjct: 193 GGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDIS 252
Query: 214 LGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVP-----DLNVKWEFKGIE 268
+ Y+S S ++MY G I+E +F NPLHPYTK+LL +VP +K EFK I
Sbjct: 253 VVRYMSSSVVVMYSGKIMESAPKHILFTNPLHPYTKLLLSAVPIPDPRSRRIK-EFKDIG 311
Query: 269 PEKEEGKVWKIKGCRYAPRCPKA-KDVC 295
K GCR+ RCP A +++C
Sbjct: 312 EPPNPAK--PPVGCRFVTRCPIASREIC 337
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 191 bits (480), Expect = 1e-47
Identities = 113/328 (34%), Positives = 176/328 (53%), Gaps = 11/328 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQV-RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L +NL + + G +V +AVD V+ +I E EI + GESG GK+T+ + + +
Sbjct: 3 VLRTENLKSYYILDIFGKKRVVKAVDDVNISIMENEIYGIAGESGCGKSTLLRALFAAIE 62
Query: 61 P----TSGRILFE--GK--DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHM 112
P G++L+ GK D+ S +E + + + V Q + NP+ ++ + F
Sbjct: 63 PPQRIVGGKVLYRENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNPVVKIKETFKD 122
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+S+ +EE EM + ++E+GL P E+ YPHQLSGG QR+ IA A +L P++
Sbjct: 123 FIESHTTGKTKEEAYEMAKEHIKELGL-PIEILNAYPHQLSGGMRQRVTIALATVLSPKV 181
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
+IADE + LD T+ V+ LL E + +++ +THD+ + ++D IMY G I+E
Sbjct: 182 IIADEPTTALDVVTQRGVVQLLKEIQSSRQNTIILVTHDMGVHANVTDRIAIMYAGKIIE 241
Query: 233 MGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAK 292
G+TE++F NP+HPYTK L+ S+P K + P GC + PRCP A
Sbjct: 242 EGKTEEIFENPMHPYTKYLIYSLPKFGDKGR-RESAPGSPPSLADLPPGCSFHPRCPHAF 300
Query: 293 DVCFKIRPTLIEVEKNHWVACHLYQSSR 320
D C K P L E H VAC L + +
Sbjct: 301 DRCKKEVPPLKEYLPGHRVACWLVEEGK 328
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 190 bits (479), Expect = 1e-47
Identities = 122/330 (36%), Positives = 174/330 (51%), Gaps = 18/330 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L VQNL FT+ G V+AV GVSF + +GE ++VGESG GK+ + I+ LL P
Sbjct: 4 VLSVQNLHVSFTTY---GGTVQAVRGVSFDLYKGETFAIVGESGCGKSVTSQSIMGLLPP 60
Query: 62 -----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
T GRILF+ KD+ + S KE++ + +FQDP + NP V
Sbjct: 61 YSAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMTALNPTLTVGDQLGEALLR 120
Query: 117 YFPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ + R+E++ L VG+ +P E +YPHQ SGG QRI+IA AL+ +P +LIA
Sbjct: 121 HKKMSKKAARKEVL-SMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALICEPDILIA 179
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + +L L E + K SV+ ITHDL + ++D +MY G + E+G
Sbjct: 180 DEPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVMYAGKMAEIGT 239
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKI----KGCRYAPRCPKA 291
+ +F+ P HPYTK LL SVP L + G E +G + GC +A RCP
Sbjct: 240 RKDIFYQPQHPYTKGLLGSVPRL----DLNGAELTPIDGTPPDLFSPPPGCPFAARCPNR 295
Query: 292 KDVCFKIRPTLIEVEKNHWVACHLYQSSRE 321
VC ++ P +H V C L E
Sbjct: 296 MVVCDRVYPGQTIRSDSHTVNCWLQDQRAE 325
>pir||T45281 probable ABC transporter intracellular ATPase chain BldKE
[imported] - Streptomyces coelicolor (fragment)
>gi|1532205|gb|AAB09558.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldKE
[Streptomyces coelicolor A3(2)]
Length = 284
Score = 190 bits (479), Expect = 1e-47
Identities = 108/260 (41%), Positives = 159/260 (60%), Gaps = 14/260 (5%)
Query: 13 TSGLIGGYQ-------VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGR 65
TS + GG+ ++AVD V F + G + LVGESG GK+T G+ + RL PT G
Sbjct: 25 TSPIKGGFPDQAHRRPLKAVDRVDFEVFPGRELGLVGESGCGKSTTGRQLTRLYEPTQGS 84
Query: 66 ILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDSYFPDLGR 123
I + GKDI + +++EL ++Q +FQDP+AS NP V + M + P GR
Sbjct: 85 IEYRGKDITRANRRELAPVR-SEIQMIFQDPYASLNPRQTVGTIISGPMEINGINPPGGR 143
Query: 124 EEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLD 183
E+R + + LE VGLNP E ++PH+ SGGQ QRI +ARA+ L+P+L++ADE VS LD
Sbjct: 144 EKR---VRELLEIVGLNP-EHYNRFPHEFSGGQRQRIGVARAVALQPKLIVADEPVSALD 199
Query: 184 ASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNP 243
S + V+NLL E + + G + +FI HDLA+ + S +MY G IVE+ + + +++ P
Sbjct: 200 VSIQAQVVNLLQEVQREMGIAFVFIAHDLAIVRHFSQRVAVMYLGKIVEIADRDSLYNRP 259
Query: 244 LHPYTKMLLESVPDLNVKWE 263
HPYT LL +VP+ ++ E
Sbjct: 260 RHPYTHALLSAVPETDLDAE 279
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 190 bits (479), Expect = 1e-47
Identities = 116/320 (36%), Positives = 169/320 (52%), Gaps = 12/320 (3%)
Query: 2 LLEVQNL-TKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
LLEV+NL T FT+ ++AV GV FTI G+ + +VGESGSGK+ IL LL
Sbjct: 5 LLEVKNLHTYFFTNK----GTIKAVQGVDFTIEAGKTLGIVGESGSGKSITAFSILNLLE 60
Query: 61 P----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
G I F G +++ KKE++ + +FQ+P S NP+H++ +
Sbjct: 61 YPGKIVQGEINFGGINLVNLGKKEIRKIRGNDISMIFQEPMTSLNPVHRIGRQLSEPLIL 120
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+ +E ID E NP V YP QLSGG QR++IA AL KPRLLIAD
Sbjct: 121 HQHMSKKEAWAAAIDLLREVKIPNPENVVYNYPFQLSGGMRQRVMIAMALACKPRLLIAD 180
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E + LD + + + L+ + + K+ T+++FITHDL ++D +MY G IVE
Sbjct: 181 EPTTALDVTIQAQIFKLMNDLKKKHNTAIMFITHDLGAIAELADDVAVMYTGEIVERAPV 240
Query: 237 EKVFHNPL---HPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
+ +F HPY + LLES+P L+ + E+ + KGCR++ RC A +
Sbjct: 241 DVIFDRQTQFSHPYKEGLLESIPLLDEEVEYLAQIQGSVPHPLKLPKGCRFSTRCEYATE 300
Query: 294 VCFKIRPTLIEVEKNHWVAC 313
C +P L+EVE+ H + C
Sbjct: 301 KCRNEKPELVEVEEGHLIRC 320
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 190 bits (478), Expect = 2e-47
Identities = 123/339 (36%), Positives = 191/339 (56%), Gaps = 30/339 (8%)
Query: 2 LLEVQNLTKIF--TSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
+LE+++L F T G V+AVDGVSF I GEI+ LVGESG GK+ + ILR+L
Sbjct: 4 VLEIRDLKVYFDLTEGT-----VKAVDGVSFDIRRGEILGLVGESGCGKSVTAQSILRIL 58
Query: 60 TPTS----GRILFE--GK--DIMKFSKK--ELKTYYYRKVQAVFQDPFASFNPLHQVD-K 108
++ G I+F GK D+ + + E++ + + +FQ+P ASF+P++ V +
Sbjct: 59 PKSARIVNGEIVFHRNGKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFSPVYTVGAQ 118
Query: 109 VFHMIFDSYFPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALL 167
+ I ++ +EE + + + L++V + N +V YP +LSGG LQR +IA A+
Sbjct: 119 MIEAIL--LHENVSKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRCMIAMAMS 176
Query: 168 LKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYR 227
L P LL+ADE + LD + + +L L+ E + +Y +S+L ITHD+ + ++D +MY
Sbjct: 177 LNPTLLLADEPTTALDVTIQAQILYLMKELQKEYHSSILLITHDMGVVAQMADRVAVMYL 236
Query: 228 GTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVK----WEFKGIEPEKEEGKVWKIKGCR 283
G IVE E ++F NPLHPYT+ LL S+P + ++ KG+ P+ GCR
Sbjct: 237 GNIVETAEVFELFKNPLHPYTQALLRSIPKIGIRKTRLETIKGMVPDPYNLPT----GCR 292
Query: 284 YAPRCPK-AKDVCFKIRPTLIEVEKNHWVACHLYQSSRE 321
+ RC K K +C P +EV+ H V C LY +E
Sbjct: 293 FHNRCEKFMKGLCDVKEPPEVEVKPGHKVKCFLYGGEKE 331
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 189 bits (476), Expect = 3e-47
Identities = 121/328 (36%), Positives = 183/328 (54%), Gaps = 12/328 (3%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M L+V++L S IG +RA++ V F + +G+ + ++GE+GSGKTTI I+R L
Sbjct: 1 MSLQVRDLN---ISYKIGKGSIRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIMRALP 57
Query: 61 PT---SGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
SG I F KDI+K ++ K ++K+ + Q +FNP+ +V + I
Sbjct: 58 ENAEYSGSIFFNNKDILKMDQETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMME 117
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
++ + E I ++ L P E+ K P +LSGGQ QR++IA ALLL P L+IAD
Sbjct: 118 NDSNIDTSKASERIFYLFNQLSL-PPEIYKKLPDELSGGQRQRVVIASALLLDPELVIAD 176
Query: 177 EAVSMLDASTRIDVLNLLG-EFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
E + LD + V++L+ E DK T +++ITHD+A+ ++ + +Y G I+E G+
Sbjct: 177 EPTTALDVINQARVISLIKREIVDKQKT-LIYITHDIAVVAGVAKKVLTLYAGEIMEFGD 235
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNV-KWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
+ K+F PLHPY+K LL SVPD+ K + P +IKGC +APRC AKD+
Sbjct: 236 SRKIFKEPLHPYSKGLLSSVPDIRFGKVKKVHYIPGDPPDLSKEIKGCPFAPRCSIAKDI 295
Query: 295 CFKIRPTLIEVEKNHWVACHLYQSSREG 322
C +P L V+ +VACHL G
Sbjct: 296 CKVEKPKLRYVD-GRYVACHLVGGEENG 322
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 189 bits (476), Expect = 3e-47
Identities = 109/298 (36%), Positives = 160/298 (53%), Gaps = 8/298 (2%)
Query: 23 RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRIL-----FEGKDIMKFS 77
RAVD +S+++ +GE+V +VGESGSGK+ + L + L GR++ F G+D+ + S
Sbjct: 21 RAVDRISYSVKQGEVVGIVGESGSGKS-VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79
Query: 78 KKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEV 137
+KE + +V +FQDP S NP + V + R+ ID L +V
Sbjct: 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAID-LLNQV 138
Query: 138 GL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGE 196
G+ +P+ YPHQLSGG QR++IA A+ +P+LLIADE + LD + + ++ LL E
Sbjct: 139 GIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198
Query: 197 FRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVP 256
+ K +++ ITHDLAL + I+MY G +VE G+ +FH P HPYT+ LL ++P
Sbjct: 199 LQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALP 258
Query: 257 DLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACH 314
+ E P GK + GC PRCP A D C P L + CH
Sbjct: 259 EFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCH 316
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 189 bits (476), Expect = 3e-47
Identities = 114/320 (35%), Positives = 179/320 (55%), Gaps = 10/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV++L F + +V+A+ GV+F + +GE +++VGESGSGK+ K I+RLL
Sbjct: 4 LLEVKDLNISFHTY---AGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPE 60
Query: 62 -----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
SG+ILF G DI K +K+++ + + +FQDP S NP + K
Sbjct: 61 GNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIK 120
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGK-YPHQLSGGQLQRILIARALLLKPRLLIA 175
+ + + E + + L+ VG+ +E R K YPHQ SGG QR++IA +L P++LIA
Sbjct: 121 H-QKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIA 179
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + +L+L+ + + K TS++FITHDL + ++D +MY G IVE+G
Sbjct: 180 DEPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGT 239
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
+++F+NP HPYT L+ S+P L+ E + P + KG +A R A +
Sbjct: 240 VDEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTPPDLLHPPKGDAFAARNKYAMQID 299
Query: 296 FKIRPTLIEVEKNHWVACHL 315
+ P L +V H+ A L
Sbjct: 300 LEEEPPLFKVSDTHYAATWL 319
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 189 bits (474), Expect = 5e-47
Identities = 102/264 (38%), Positives = 162/264 (60%), Gaps = 17/264 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGY---QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
+L V LTKI+ + + RAVDGVSF + +++VGESGSGK+T+ +++L L
Sbjct: 281 ILVVSELTKIYRESRGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGL 340
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVF------HM 112
L PTSG ++F+G + ++ + R+VQ VFQ+P++S +P++ V + H
Sbjct: 341 LQPTSGTVVFDGTYDVGALARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHH 400
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
+ D R +R+ + + +++V L PS + G+ P +LSGGQ QR+ IARAL L+P +
Sbjct: 401 VGD-------RRQRQRAVRELVDQVAL-PSSILGRRPRELSGGQRQRVAIARALALRPEV 452
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
L+ DEAVS LD + +L+LL + + G + LFI+HDLA+ I+D ++M G +VE
Sbjct: 453 LVCDEAVSALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVE 512
Query: 233 MGETEKVFHNPLHPYTKMLLESVP 256
TE+VF P H YT+ LL+++P
Sbjct: 513 HASTEEVFSRPRHEYTRQLLQAIP 536
Score = 168 bits (421), Expect = 8e-41
Identities = 103/265 (38%), Positives = 149/265 (55%), Gaps = 14/265 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL V+ L F G AV GV + G+ V++VGESGSGK+T IL LL
Sbjct: 8 LLSVEGLEVTF------GTDAPAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPA 61
Query: 62 ----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
T+GR++F+G+DI K L++ R++ V QDP + NP+ +V F +
Sbjct: 62 GGRITAGRVVFDGRDITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVG--FQVTEALR 119
Query: 118 FPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
GR R ++ L E GL +P++ G+YPHQLSGG QR LIA L +PRLLIAD
Sbjct: 120 ANTDGRAARRRAVE-LLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIAD 178
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E S LD + + VL+ L D+ GT++L ITHDLAL +++ +++ RG +VE G
Sbjct: 179 EPTSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAA 238
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVK 261
+ + +P H YT+ L+ + P L +
Sbjct: 239 QSILQSPQHEYTRRLVAAAPSLTAR 263
>pir||F64557 dipeptide transport ATP-binding protein dppF - Helicobacter pylori
(strain 26695) >gi|2313400|gb|AAD07371.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Helicobacter pylori 26695]
Length = 268
Score = 188 bits (473), Expect = 7e-47
Identities = 108/262 (41%), Positives = 166/262 (63%), Gaps = 10/262 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQV-RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
LLE++ L K + GL +V A++G+SF + + E++S+VGESG GK+T K++ +
Sbjct: 3 LLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGI 62
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDS 116
SG I F GK + FSK++ Y +KVQ +FQDP++S NP +V ++ ++ +S
Sbjct: 63 ERQDSGAIYFNGKRHLHFSKQDWFDYR-KKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNS 121
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+F ++E + + + +++VGL + +YPHQ SGGQ QRI IARAL+L P ++I D
Sbjct: 122 HF---SKKEIKTKVLEIMQKVGLKLEWI-DRYPHQFSGGQRQRIGIARALILHPSVVICD 177
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E VS LD S + VLNLL + + + G + +FI+HDL + +ISD I+M +G IVE G+
Sbjct: 178 EPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGDV 237
Query: 237 EKVFHNPLHPYTKMLLESVPDL 258
+ V P HPYT+ LL +VP L
Sbjct: 238 DSVISAPKHPYTQKLLNAVPHL 259
>pir||A71952 dipeptide transport system ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4154801|gb|AAD05857.1|
(AE001465) DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 268
Score = 188 bits (473), Expect = 7e-47
Identities = 108/262 (41%), Positives = 166/262 (63%), Gaps = 10/262 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQV-RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
LLE++ L K + GL +V A++G+SF + + E++S+VGESG GK+T K++ +
Sbjct: 3 LLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGI 62
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDS 116
SG I F GK + FSK++ Y +KVQ +FQDP++S NP +V ++ ++ +S
Sbjct: 63 ERQDSGAIYFNGKRHLHFSKQDWFDYR-KKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNS 121
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+F ++E + + + +++VGL + +YPHQ SGGQ QRI IARAL+L P ++I D
Sbjct: 122 HF---SKKEIKTKVLEIMQKVGLKLEWI-DRYPHQFSGGQRQRIGIARALILHPSVVICD 177
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E VS LD S + VLNLL + + + G + +FI+HDL + +ISD I+M +G IVE G+
Sbjct: 178 EPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGDV 237
Query: 237 EKVFHNPLHPYTKMLLESVPDL 258
+ V P HPYT+ LL +VP L
Sbjct: 238 DSVISAPKHPYTQKLLNAVPHL 259
>pir||T03432 probable transport protein accC - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153179|gb|AAC17199.1| (AF010180) AccC
[Agrobacterium tumefaciens]
Length = 338
Score = 188 bits (472), Expect = 9e-47
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 18/321 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVR-AVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
LL+ + +TK+F SGL V AV+ + + E V +VGESGSGK+T+G+L+L L
Sbjct: 5 LLQARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVGVVGESGSGKSTLGRLLLGL 64
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSY 117
+ T G +LFEG S ++ T+ ++ V Q+P ++ NP + +++ ++
Sbjct: 65 TSTTEGEVLFEGLAHTDRSARDWSTFR-KETSLVQQNPLSALNPQMTIGEQIAEAVWVHR 123
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+ G +R + L+ VGL+ S + +YPHQ+SGGQ QR++IARAL+L P+L++ DE
Sbjct: 124 VANAGARDRAATM---LDRVGLS-SAMMNRYPHQMSGGQRQRVVIARALILDPKLVVFDE 179
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
AVS LD S + V+ LL + + + +FITHDL + ++ D ++MY G +VE G+ +
Sbjct: 180 AVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGDIK 239
Query: 238 KVFHNPLHPYTKMLLESVPDLNVKWEFKGIEP----EKEEGKVWKIKGCRYAPRCPKAKD 293
V+ P HPYT+ LL SVP ++ + IEP E + GKV + GC + RCP A +
Sbjct: 240 SVYAWPRHPYTRALLASVPTMDP--TVRNIEPPIKGELDAGKV--MTGCAFRSRCPFAIE 295
Query: 294 VCFKIRPTLIEVEKNHWVACH 314
C K P L+ ACH
Sbjct: 296 RCAKETP-LLRPAGGQLAACH 315
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 188 bits (472), Expect = 9e-47
Identities = 117/324 (36%), Positives = 188/324 (57%), Gaps = 16/324 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+V++L +I+ L G V+AVDGVSF I GEI+ + GESG GK+T+G ++ L
Sbjct: 7 VVLDVRDL-RIYYRTLYG--YVKAVDGVSFDIKRGEILGIAGESGCGKSTLGNGLILLKP 63
Query: 61 PTS---GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
P G + +GK+IM S KEL+ Y K+ + Q + NP ++ ++ + +
Sbjct: 64 PMKYMGGEAILDGKNIMALSPKELRKVRYEKISIIPQYAMDAMNPTKKIKQIIDDLLHEH 123
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
E ++++I++ LE V L +V YP +LSGG QR+++ + L+ P +LIADE
Sbjct: 124 GESF--ERKKDVIEERLEIVNLG-KKVLNMYPIELSGGMKQRMVMVISTLMNPDVLIADE 180
Query: 178 AVSMLDASTRIDVLNLLGEFRDK-YGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
S LD S++ V+ +L E R+K S+ FITHDL++ Y I+D +++Y G + E+
Sbjct: 181 ITSALDVSSQRSVIQMLYEMREKEIMGSLAFITHDLSVLYQIADKVMVLYAGRVAEISPM 240
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKW---EFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
E + PLHPYTKMLL S+P + V++ + KGI P + GCR+ RCP A +
Sbjct: 241 EDIIQEPLHPYTKMLLSSLPKIGVRYSQTKLKGI-PGYPPSLLNIGPGCRFRDRCPYAFE 299
Query: 294 VCFKIRPTLIEVEKNHWVACHLYQ 317
C + P + +V+ V+C L++
Sbjct: 300 KC-EQDPPVFDVD-GRKVSCWLFE 321
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 188 bits (472), Expect = 9e-47
Identities = 114/335 (34%), Positives = 185/335 (55%), Gaps = 21/335 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
MLLEV++L F + +AV+GVS+ ++ GE ++++GESGSGK+ + I+ +L
Sbjct: 1 MLLEVRDLHVEFHTR---DGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILD 57
Query: 61 -----PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFD 115
T+G ILFEG+D++K ++E + ++ +FQD +S NP+ V +F
Sbjct: 58 IPPGRVTAGEILFEGRDLLKLKEEERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFT 117
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVRGK-YPHQLSGGQLQRILIARALLLKPRLLI 174
+ + R++ + ++ V + ++ R + YPHQ SGG QRI+IA A+ L+P+L+I
Sbjct: 118 VH-RGMSRKDAHAKAVELMDRVRIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLII 176
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
ADE + LD + + V++LL E + + ++ ITHDL + ++D +MY G IVE
Sbjct: 177 ADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETA 236
Query: 235 ETEKVFHNPLHPYTKMLLESVPDLNVK----WEFKGIEPEKEEGKVWKIKGCRYAPRCPK 290
++ P HPYT+ LLES+P L+ K + KG+ P GC + PRCP
Sbjct: 237 PVHDIYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIP----PGCAFHPRCPM 292
Query: 291 AKDVCFKIRPTLIEV---EKNHWVACHLYQSSREG 322
A+DVC P L +V + ACH ++ G
Sbjct: 293 AQDVCRTDVPPLYDVTESDAERGSACHFWRECLHG 327
>pir||E64820 probable oligopeptide transport protein - Escherichia coli
>gi|1787051|gb|AAC73916.1| (AE000185) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 612
Score = 187 bits (470), Expect = 2e-46
Identities = 115/260 (44%), Positives = 158/260 (60%), Gaps = 9/260 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
+L V+NL F SGL+ +V AV+ VSF + GE +SLVGESGSGK+T G+ +LR
Sbjct: 302 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 361
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDS 116
L+ G I+F G+ I S +L+ R +Q +FQDP+AS +P + D + +
Sbjct: 362 LVESQGGEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIGDSIIEPL--R 418
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
L ++ + LE VGL P E +YPH+ SGGQ QRI IARAL L P+++IAD
Sbjct: 419 VHGLLPGKDAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 477
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
EAVS LD S R ++NLL + + +G + LFI+HD+A+ IS +MY G IVE+G
Sbjct: 478 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 537
Query: 237 EKVFHNPLHPYTKMLLESVP 256
VF NP HPYT+ LL +VP
Sbjct: 538 RAVFENPQHPYTRKLLAAVP 557
Score = 153 bits (382), Expect = 3e-36
Identities = 91/280 (32%), Positives = 151/280 (53%), Gaps = 22/280 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L V+NL F ++ AV +SF++ GE +++VGESGSGK+ ++RLL
Sbjct: 1 MLAVENLNIAFMQDQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 57
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQA----------VFQDPFASFNPLHQVDKVFH 111
G + + + + S++ ++ Q +FQ+P S NP+ V +
Sbjct: 58 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE--- 114
Query: 112 MIFDSYFPDLGREEREEMID--KALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLL 168
I +S E M++ + L++V + ++ + +YPHQLSGG QR++IA AL
Sbjct: 115 QIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 174
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG 228
+P +LIADE + LD + + +L L+ + + V+FITHD+ + I+D ++MY+G
Sbjct: 175 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 234
Query: 229 TIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE 268
VE G E++FH P HPYT+ LL +VP L KG++
Sbjct: 235 EAVETGTVEQIFHAPQHPYTRALLAAVPQLGA---MKGLD 271
>dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-binding protein in bcr
5'region. [Escherichia coli] >gi|4062406|dbj|BAA35524.1|
(D90721) Hypothetical ABC transporter ATP-binding
protein in bcr 5'region. [Escherichia coli]
Length = 659
Score = 187 bits (470), Expect = 2e-46
Identities = 115/260 (44%), Positives = 158/260 (60%), Gaps = 9/260 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
+L V+NL F SGL+ +V AV+ VSF + GE +SLVGESGSGK+T G+ +LR
Sbjct: 349 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 408
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDS 116
L+ G I+F G+ I S +L+ R +Q +FQDP+AS +P + D + +
Sbjct: 409 LVESQGGEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIGDSIIEPL--R 465
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
L ++ + LE VGL P E +YPH+ SGGQ QRI IARAL L P+++IAD
Sbjct: 466 VHGLLPGKDAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 524
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
EAVS LD S R ++NLL + + +G + LFI+HD+A+ IS +MY G IVE+G
Sbjct: 525 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 584
Query: 237 EKVFHNPLHPYTKMLLESVP 256
VF NP HPYT+ LL +VP
Sbjct: 585 RAVFENPQHPYTRKLLAAVP 604
Score = 152 bits (381), Expect = 4e-36
Identities = 91/280 (32%), Positives = 151/280 (53%), Gaps = 22/280 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L V+NL F ++ AV +SF++ GE +++VGESGSGK+ ++RLL
Sbjct: 48 VLAVENLNIAFMQDQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 104
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQA----------VFQDPFASFNPLHQVDKVFH 111
G + + + + S++ ++ Q +FQ+P S NP+ V +
Sbjct: 105 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE--- 161
Query: 112 MIFDSYFPDLGREEREEMID--KALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLL 168
I +S E M++ + L++V + ++ + +YPHQLSGG QR++IA AL
Sbjct: 162 QIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 221
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG 228
+P +LIADE + LD + + +L L+ + + V+FITHD+ + I+D ++MY+G
Sbjct: 222 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 281
Query: 229 TIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE 268
VE G E++FH P HPYT+ LL +VP L KG++
Sbjct: 282 EAVETGTVEQIFHAPQHPYTRALLAAVPQLGA---MKGLD 318
>sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YLIA
Length = 629
Score = 187 bits (470), Expect = 2e-46
Identities = 115/260 (44%), Positives = 158/260 (60%), Gaps = 9/260 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGY--QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
+L V+NL F SGL+ +V AV+ VSF + GE +SLVGESGSGK+T G+ +LR
Sbjct: 319 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 378
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDS 116
L+ G I+F G+ I S +L+ R +Q +FQDP+AS +P + D + +
Sbjct: 379 LVESQGGEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTIGDSIIEPL--R 435
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
L ++ + LE VGL P E +YPH+ SGGQ QRI IARAL L P+++IAD
Sbjct: 436 VHGLLPGKDAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 494
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
EAVS LD S R ++NLL + + +G + LFI+HD+A+ IS +MY G IVE+G
Sbjct: 495 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 554
Query: 237 EKVFHNPLHPYTKMLLESVP 256
VF NP HPYT+ LL +VP
Sbjct: 555 RAVFENPQHPYTRKLLAAVP 574
Score = 152 bits (381), Expect = 4e-36
Identities = 91/280 (32%), Positives = 151/280 (53%), Gaps = 22/280 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L V+NL F ++ AV +SF++ GE +++VGESGSGK+ ++RLL
Sbjct: 18 VLAVENLNIAFMQDQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 74
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQA----------VFQDPFASFNPLHQVDKVFH 111
G + + + + S++ ++ Q +FQ+P S NP+ V +
Sbjct: 75 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE--- 131
Query: 112 MIFDSYFPDLGREEREEMID--KALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLL 168
I +S E M++ + L++V + ++ + +YPHQLSGG QR++IA AL
Sbjct: 132 QIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 191
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG 228
+P +LIADE + LD + + +L L+ + + V+FITHD+ + I+D ++MY+G
Sbjct: 192 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 251
Query: 229 TIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE 268
VE G E++FH P HPYT+ LL +VP L KG++
Sbjct: 252 EAVETGTVEQIFHAPQHPYTRALLAAVPQLGA---MKGLD 288
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 186 bits (468), Expect = 3e-46
Identities = 104/279 (37%), Positives = 167/279 (59%), Gaps = 11/279 (3%)
Query: 1 MLLEVQNL-TKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
M+LEV++L T FT + +AVDGVSF + + + + +VGESGSGK+ IL L+
Sbjct: 1 MILEVKDLKTYFFTDKGVN----KAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLI 56
Query: 60 TP----TSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIF 114
G I F G+D+++ +K++ K +K+ +FQ+P S NP + V + +
Sbjct: 57 EKPGQIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVL 116
Query: 115 DSYFPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
+ P+L ++ER E + LE VG+ + + +YP LSGGQ QR++IA A++ +P +L
Sbjct: 117 KIHHPNLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEIL 176
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
IADE + LD + + +L L+ E + K GTS+LFITHDL + I+D ++MY+G +VE
Sbjct: 177 IADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQ 236
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKE 272
+++F +P HPYTK LL ++P ++ K +E E
Sbjct: 237 ASAKELFADPRHPYTKALLSAIPKPGKEYRKKRLETVDE 275
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 186 bits (468), Expect = 3e-46
Identities = 107/317 (33%), Positives = 175/317 (54%), Gaps = 20/317 (6%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP---------TSGRILFEGKD 72
V++VDG+SF + +G+ + +VGESGSGK+ I+ L T SG I +G +
Sbjct: 41 VKSVDGLSFQLEKGKTLGIVGESGSGKSVTSLGIMGLHTAGQYGKRKARISGEIWLDGTE 100
Query: 73 IMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY--FPDLGREEREEMI 130
++ ++ R++ +FQDP ++ +P + + + I ++Y + ++ +
Sbjct: 101 LLSADPDHVRKLRGREMAMIFQDPLSALHPYYTIGQ---QIVEAYRIHHKVDKKTAKRRA 157
Query: 131 DKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRID 189
+ L+ VG+ P + YPH+ SGG QR +IA +L+ P LLIADE + LD + +
Sbjct: 158 VEMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIAMSLVNNPELLIADEPTTALDVTVQAQ 217
Query: 190 VLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTK 249
+L+L+ + + ++G++V+ ITHDL + ++D ++MY G VE G EKVF+ P HPYT
Sbjct: 218 ILDLIRDLQKEFGSAVIVITHDLGVVAELADDLLVMYGGRCVERGPAEKVFYEPRHPYTW 277
Query: 250 MLLESVPDLNVKWEFKGIEPEKEEGKVWKI-KGCRYAPRCPKA----KDVCFKIRPTLIE 304
LL S+P L+ + + I + + + GC + PRCP A DV +RP L E
Sbjct: 278 GLLGSMPRLDRDQQERLIPVKGSPPSLINLPSGCAFNPRCPYADVPKDDVTRTVRPELTE 337
Query: 305 VEKNHWVACHLYQSSRE 321
V HW ACH+ Q RE
Sbjct: 338 VGSKHWAACHMSQEQRE 354
>gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1]
Length = 610
Score = 186 bits (468), Expect = 3e-46
Identities = 107/260 (41%), Positives = 161/260 (61%), Gaps = 9/260 (3%)
Query: 2 LLEVQNLTK---IFTSGLIGGYQ--VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLIL 56
+L ++N+ K +++ G+I G ++AV GV + G + +VGESGSGKTT+ + +
Sbjct: 310 ILSMRNVGKHFPVYSRGVIRGRVGVIKAVAGVDLDVEAGTTLGIVGESGSGKTTLIRSLF 369
Query: 57 RLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
L T G ILF+G+D+ + ++ + + VQ VFQDP+AS +P+ V + ++ +
Sbjct: 370 NLEPITHGTILFDGQDVHRMPPRDRRRMR-KCVQMVFQDPYASLDPMMTVRDI--LMEPA 426
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+ R+ E + + LE V L P E +YP++ SGGQ QRI IARAL+L PRLL+ D
Sbjct: 427 VINRMDRKLAERRVMELLERVHLKP-EHAARYPNEFSGGQRQRIAIARALMLYPRLLVLD 485
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E VS LD S + +VL LL E + S LF++HDL++ I+ S I+MYRG IVE G
Sbjct: 486 EPVSSLDVSIQAEVLTLLKELQKDLNLSYLFVSHDLSVVAEIAHSVIVMYRGRIVERGRV 545
Query: 237 EKVFHNPLHPYTKMLLESVP 256
+++F NP HPYT+ LL +VP
Sbjct: 546 DELFRNPKHPYTRALLSAVP 565
Score = 147 bits (367), Expect = 2e-34
Identities = 85/242 (35%), Positives = 136/242 (56%), Gaps = 5/242 (2%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL---TPTSGRILFEGKDIMKFSK 78
+ AV VS++I GE+++LVGESGSGK+ ++ LL +G I + G++++ S+
Sbjct: 37 IEAVRDVSWSIGSGEVLALVGESGSGKSVSALAVMGLLPRNARVAGSIRWRGEELLGASE 96
Query: 79 KELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVG 138
K + ++ V QDP S NP++ + ++ L E E + LE +G
Sbjct: 97 KRRRALRGSRIGLVPQDPMTSLNPVYTIGAQIREGIRAH-QKLSEREMAERTLELLETMG 155
Query: 139 LNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEF 197
+ + R YPH+LSGG QR++IA A+ P L+IADEA + LD + + VL+ L +
Sbjct: 156 IPHARERMNSYPHELSGGMRQRVVIAMAMANNPDLIIADEATTALDVTVQAQVLDALKKA 215
Query: 198 RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPD 257
+ G ++L ITHDL + +D +M RG +VE G +++F+ P YT+ LL S+P
Sbjct: 216 QALTGAALLLITHDLGVVAGRADRVAVMQRGEVVEQGTVDEIFYQPASSYTRKLLHSIPR 275
Query: 258 LN 259
LN
Sbjct: 276 LN 277
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 186 bits (467), Expect = 3e-46
Identities = 104/279 (37%), Positives = 166/279 (59%), Gaps = 11/279 (3%)
Query: 1 MLLEVQNL-TKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
M+LEV++L T FT + +AVDGVSF + + + + +VGESGSGK+ IL L+
Sbjct: 1 MILEVKDLKTYFFTDKGVN----KAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLI 56
Query: 60 TP----TSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIF 114
G I F G+D+++ +K++ K +K+ +FQ+P S NP + V + +
Sbjct: 57 EKPGKIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVL 116
Query: 115 DSYFPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
+ P L ++ER E + LE VG+ + + +YP LSGGQ QR++IA A++ +P +L
Sbjct: 117 KIHHPSLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEIL 176
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
IADE + LD + + +L L+ E + K GTS+LFITHDL + I+D ++MY+G +VE
Sbjct: 177 IADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQ 236
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKE 272
+++F +P HPYTK LL ++P ++ K +E E
Sbjct: 237 ASAKELFADPRHPYTKALLNAIPKPGKEYRKKRLETVDE 275
>gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocytogenes]
Length = 325
Score = 186 bits (467), Expect = 3e-46
Identities = 103/258 (39%), Positives = 149/258 (56%), Gaps = 6/258 (2%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLE+ NL + F G +VRAVD +SF I +GE + LVGESG GK+T G+ I+RL
Sbjct: 8 LLEIHNLKQYFNKGTAS--EVRAVDDISFDIYKGETLGLVGESGCGKSTTGRTIIRLYDA 65
Query: 62 TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDL 121
T G +++ GKD+ ++ + RK+Q +FQDP+AS NP +V + +
Sbjct: 66 TGGEVIYNGKDVHARKSRKEMLEFRRKMQMIFQDPYASLNPRVKVKDIIAEGIRIHGLAK 125
Query: 122 GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS- 180
EE + + LE VGL+ E G+YPH+ SGGQ QRI P +IADE +S
Sbjct: 126 TPEETNKQVYDLLETVGLS-KEHAGRYPHEFSGGQRQRIGYRSCACCSPEFIIADEPISA 184
Query: 181 --MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
LD S + V+NLL + + + + LFI HDL++ YISD +MY G +V++
Sbjct: 185 LDFLDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMVKYISDRIGVMYFGKLVKLAFAND 244
Query: 239 VFHNPLHPYTKMLLESVP 256
++H PLHPYT+ LL ++P
Sbjct: 245 LYHAPLHPYTESLLSAIP 262
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 185 bits (466), Expect = 4e-46
Identities = 111/325 (34%), Positives = 174/325 (53%), Gaps = 16/325 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+++NLT F I AVD V+ +N+ E++++VGESGSGK+ + I+ L P
Sbjct: 6 LLQIRNLTTAFQ---IKDDFYAAVDNVTLNVNKNEVLAIVGESGSGKSALANTIMGLHNP 62
Query: 62 T----SGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
G I F+G++++K +L K+ +FQDP + NPL + + +
Sbjct: 63 ERTKIEGEINFKGENLVKLPVSKLNKIRGDKLSMIFQDPLTALNPLMIIGEQIGEALLLH 122
Query: 118 FPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
L + ER++ + L VG+ P +YPH+LSGG QR++IA A+ +P LIAD
Sbjct: 123 -RSLTKAERKKKVIDLLNLVGIPRPESTYEQYPHELSGGMRQRVMIAAAIACEPEFLIAD 181
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E + LD + + +L+L+ + ++K ++ ITHDL + ++D +MY G IVE+ +
Sbjct: 182 EPTTALDVTIQAQILDLIRDLKEKIHAGIILITHDLGVVAEMADRVAVMYAGQIVEIADV 241
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWE----FKGIEPEKEEGKVWKIKGCRYAPRCPKAK 292
+F PLHPYT+ LL SVP + E +GI P + KGCR+ R P
Sbjct: 242 FTLFERPLHPYTRSLLNSVPSESNDQEKLHVIQGIVPALQN---LPRKGCRFKDRIPWLS 298
Query: 293 DVCFKIRPTLIEVEKNHWVACHLYQ 317
+ + P L EVE H+V C Y+
Sbjct: 299 ESAHEDHPELHEVEPGHFVRCTCYK 323
>gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 267
Score = 185 bits (464), Expect = 8e-46
Identities = 110/261 (42%), Positives = 154/261 (58%), Gaps = 9/261 (3%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
L+E+ ++ K F G+ G + V+ I + EIV +VG SG GKT I +I+ LL
Sbjct: 5 LIELIHVYKDFIVRKGVFGKEHRPGIWDVNMDIRKNEIVGMVGGSGGGKTVIAWMIVGLL 64
Query: 60 TPTSGRILFE--GKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
PT G I++ G D+ K +KK+LK Y VQ VFQDP++S +P H V Y
Sbjct: 65 KPTKGSIIYTPMGLDVTKANKKQLKQYR-ADVQLVFQDPYSSLDPAHTVKWHIERPLKIY 123
Query: 118 FPDLGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
R + EE I + L EV L P E KYP QLSGGQ QR+ +AR L L P++LIAD
Sbjct: 124 ---KYRGDIEERIKELLREVALTPPEDFLNKYPFQLSGGQRQRVYLARVLALNPKVLIAD 180
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E VS +DAS R +L+L RD+ G S+++ITHD+A Y++D ++ G IVE G+
Sbjct: 181 EPVSNVDASIRASLLDLFKRLRDEKGISIMYITHDIATIGYVADRVYVVKNGRIVEEGDV 240
Query: 237 EKVFHNPLHPYTKMLLESVPD 257
+ +P H YT++L+E+VPD
Sbjct: 241 GTIISHPKHEYTRLLIEAVPD 261
>sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|47805|emb|CAA29042.1| (X05491) Opp D (AA1-335)
[Salmonella typhimurium]
Length = 335
Score = 184 bits (462), Expect = 1e-45
Identities = 108/305 (35%), Positives = 169/305 (55%), Gaps = 10/305 (3%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LLEV +L F + V AV+ ++FT+ GE + +VGESGSGK+ ++ LL
Sbjct: 16 VLLEVNDLRVTFATP---DGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLA 72
Query: 61 PTSGRI----LFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
T+GRI F G++I+ ++EL T ++ +FQDP S NP +V + +
Sbjct: 73 -TNGRIGGSATFNGREILNLPERELNTLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 131
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGK-YPHQLSGGQLQRILIARALLLKPRLLIA 175
+ E EE + + L+ V + + R K YPH+ SGG QR++IA ALL +P+LLIA
Sbjct: 132 HKGMSKAEAFEESV-RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 190
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + ++ LL E + ++ T+++ ITHDL + I D ++MY G +E G+
Sbjct: 191 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGK 250
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
VF+ P+HPY+ LL +VP L+ + P + KGC + PRCP A ++C
Sbjct: 251 ARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 310
Query: 296 FKIRP 300
P
Sbjct: 311 NNAPP 315
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 183 bits (461), Expect = 2e-45
Identities = 124/335 (37%), Positives = 180/335 (53%), Gaps = 24/335 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLI----L 56
+LL+ +N+ + + V+AVDG+SF I E E++ +VGESG GKTT+ +I +
Sbjct: 4 ILLKAENVRAYYKLEKVS---VKAVDGLSFEILEDEVIGVVGESGCGKTTLSNVIFMNMV 60
Query: 57 RLLTPTSGRILF----EGKDIMKFSKKELKTYYYRK-VQAVFQDPFASFNPLHQVDKVFH 111
+ LT G+I E ++ ++ E+K ++ K + + Q + P +++K
Sbjct: 61 KPLTLVDGKIFLRVNGEFVELSSMTRDEVKRKFWGKEITIIPQAAMNALMPTIRMEKYVR 120
Query: 112 MIFDSYFPDLGREEREEMIDKA---LEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLL 168
+ +S+ D EE++DKA EEVGL+P ++ +YP +LSGG QR +IA A +L
Sbjct: 121 HLAESHGID-----EEELLDKARRRFEEVGLDPLWIK-RYPFELSGGMRQRAVIAIATIL 174
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEF-RDKYGTSVLFITHDLALGYYISDSTIIMYR 227
P LLIADE S LD + +L +L + R S++FITHD+A I+D IIMY
Sbjct: 175 NPSLLIADEPTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATVRQIADRMIIMYA 234
Query: 228 GTIVEMGETEKVFHNPLHPYTKMLLESV--PDLNVKWEFKGIEPEKEEGKVWKIKGCRYA 285
G IVE E + PLHPYT+ L SV P+ VK P + GCR+
Sbjct: 235 GKIVEFAPVESLLEKPLHPYTQGLFNSVLTPEPEVKKRGITTIPGAPPNLINPPSGCRFH 294
Query: 286 PRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQSSR 320
PRCP A DVC + P L E+E VAC LY R
Sbjct: 295 PRCPHAMDVCKEKEPPLTEIEPGRRVACWLYMEER 329
>pir||QREBOT oligopeptide transport protein oppD - Salmonella typhimurium
Length = 335
Score = 183 bits (460), Expect = 2e-45
Identities = 109/305 (35%), Positives = 169/305 (54%), Gaps = 10/305 (3%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LLEV +L F + V AV+ ++FT+ GE + +VGESGSGK+ +L L L
Sbjct: 16 VLLEVNDLRVTFATP---DGDVTAVNDLNFTLRAGETLGIVGESGSGKSQ-SRLRLMGLL 71
Query: 61 PTSGRI----LFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
T+GRI F G++I+ ++EL T ++ +FQDP S NP +V + +
Sbjct: 72 ATNGRIGGSATFNGREILNLPERELNTRRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 131
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGK-YPHQLSGGQLQRILIARALLLKPRLLIA 175
+ E EE + + L+ V + + R K YPH+ SGG QR++IA ALL +P+LLIA
Sbjct: 132 HKGMSKAEAFEESV-RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 190
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + ++ LL E + ++ T+++ ITHDL + I D ++MY G +E G+
Sbjct: 191 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGK 250
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
VF+ P+HPY+ LL +VP L+ + P + KGC + PRCP A ++C
Sbjct: 251 ARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 310
Query: 296 FKIRP 300
P
Sbjct: 311 NNAPP 315
>dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elongatus]
Length = 531
Score = 183 bits (459), Expect = 3e-45
Identities = 106/260 (40%), Positives = 155/260 (58%), Gaps = 17/260 (6%)
Query: 2 LLEVQNLTKIFTSG--LIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LL V+NL + + G L +RAVDGV T+ GE + LVGESG GK+T+ +LIL+L+
Sbjct: 275 LLRVENLQRHYRLGGWLQPQTTIRAVDGVDLTLRRGETLGLVGESGCGKSTLSRLILQLI 334
Query: 60 TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDK------VFHMI 113
+G ++F G+ + + S +L+ R +Q +FQDP A NP V + + H +
Sbjct: 335 PANAGDVVFLGRSLTQLSAAQLRRTR-RDLQMIFQDPHACLNPKMTVAQNLLEPLLIHRL 393
Query: 114 FDSYFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRL 172
+ + +E + + L +V L P+E +YPH LSGGQ QR+ IARAL+ P+L
Sbjct: 394 -------MAKRAAQERVREMLMQVELTPAEAYLHRYPHALSGGQRQRVAIARALITHPQL 446
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
+I DE VSMLDA + VL L+ E +++ + LFITHDLA+ D +MYRG IVE
Sbjct: 447 VICDEPVSMLDAHIQAQVLALMQELKEQLQLTYLFITHDLAIARRFCDRVAVMYRGKIVE 506
Query: 233 MGETEKVFHNPLHPYTKMLL 252
+ T ++F +P HPYT+ LL
Sbjct: 507 LAPTAQLFAHPQHPYTQKLL 526
Score = 162 bits (406), Expect = 5e-39
Identities = 97/254 (38%), Positives = 138/254 (54%), Gaps = 4/254 (1%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLE++ L + VDGVSF + GE LVG SG GK+TIGK ILRLL P
Sbjct: 4 LLELRELRVAYPRMETSSAATFVVDGVSFCVAAGERFGLVGASGCGKSTIGKAILRLLPP 63
Query: 62 TS---GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
S G+I +G+ ++ S +L+ ++ VFQDP NPL + + S++
Sbjct: 64 GSQIFGQIALQGQSLLGLSASQLQRLRGEQIGLVFQDPMTRLNPLMSIYDHCDELLRSHW 123
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
R +R + I + LE V + P+ +YPH+LSGG QR+ IA ALLL P L+IADE
Sbjct: 124 FSWSRPQRRQRIIEVLERVKI-PANRLHQYPHELSGGMRQRVAIALALLLNPPLIIADEP 182
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
+ LD + ++L L + +L I+HDLAL D +M++G I+E+G +
Sbjct: 183 TTALDVTVAAEILEELTRLCQQEQRGLLLISHDLALMAKYCDRLAVMHQGKIMELGAAHQ 242
Query: 239 VFHNPLHPYTKMLL 252
V P HPYT+ LL
Sbjct: 243 VLQRPQHPYTQSLL 256
>sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDP
>gi|7445758|pir||G64901 ABC-type transport protein b1484
- Escherichia coli >gi|1742424|dbj|BAA15139.1| (D90789)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1742435|dbj|BAA15149.1| (D90790)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1787759|gb|AAC74557.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 328
Score = 182 bits (458), Expect = 4e-45
Identities = 115/318 (36%), Positives = 169/318 (52%), Gaps = 10/318 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L++Q L F G G V A++ VS IN GEIV LVGESGSGK+ LI+RLL
Sbjct: 5 VLDIQQLHLSFP-GFNG--DVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPT 61
Query: 62 TS-----GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
S G+I G+D++ +K+L+ + +V +FQ+P + NP ++ +
Sbjct: 62 GSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRH 121
Query: 117 YFPDLGREEREEMIDKALEEVGLNPS-EVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ P RE R + ID LEE+ + + EV +YP +LSGG QR++IA A +P+L+IA
Sbjct: 122 HQPISRREARAKAID-LLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIA 180
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + ++ VL LL GT+VLFI+HD+A+ + DS +MY G+++E G
Sbjct: 181 DEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGV 240
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
T V H+P HPYT LL+ P+ V + P GC + RC A C
Sbjct: 241 TADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQC 300
Query: 296 FKIRPTLIEVEKNHWVAC 313
+ + N AC
Sbjct: 301 ENVPALTACGDNNQRCAC 318
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 182 bits (458), Expect = 4e-45
Identities = 105/288 (36%), Positives = 163/288 (56%), Gaps = 22/288 (7%)
Query: 41 VGESGSGKTTIGKLILRLLTPTSGRILFEGK-----------DIMKFSKKELKTYYYRKV 89
+GESG GK+T+ + I R+L S ++ +G D+++ S+ EL + V
Sbjct: 1 MGESGCGKSTLARSIARILP--SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIV 58
Query: 90 QAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREER--EEMIDKALEEVGLNPSEVRGK 147
+FQDP A+ +P+H+V K + D + R E+ +E++ K + P + K
Sbjct: 59 SMIFQDPSAALSPVHKVKK---QVTDHVSGEKRRVEKIAQEILKKLMMPA---PHMILEK 112
Query: 148 YPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLF 207
YPH+LSGG QRI+IA +L+ +PR++IADE + LD + + +L +L R++ T+++
Sbjct: 113 YPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIIL 172
Query: 208 ITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGI 267
ITH+LA+ I+D +MY G +VE+ + +F PLHPYTK LL+S+P +V E + I
Sbjct: 173 ITHNLAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPHVDEEIEPI 232
Query: 268 EPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHL 315
E GCR+ PRCP DVC +I+P L E VACHL
Sbjct: 233 RGE-PPSLADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHL 279
>gi|10954942 Probable accC [Agrobacterium tumefaciens]
>gi|6498295|dbj|BAA87747.1| (AB016260) Probable accC
[Agrobacterium tumefaciens]
Length = 339
Score = 182 bits (458), Expect = 4e-45
Identities = 119/321 (37%), Positives = 183/321 (56%), Gaps = 17/321 (5%)
Query: 2 LLEVQNLTKIFT--SGLIGGYQVR-AVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL 58
LL+ + +TK+F SGL V AV+ + + E VS+V ESGSGK+T+G+L+L L
Sbjct: 5 LLQARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVSVVRESGSGKSTLGRLLLGL 64
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSY 117
+ T G +LFEG S ++ T+ ++ V Q+P ++ NP + +++ ++
Sbjct: 65 TSTTEGEVLFEGLAHTDRSARDWSTFR-KETSLVQQNPLSALNPQMTIGEQIAEAVWVHR 123
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+ R + L+ VGL+ S + +YPHQ+SGGQ QR++IARAL+L P+L+I DE
Sbjct: 124 VAN--RAGARDRAATMLDRVGLS-SAMMNRYPHQMSGGQRQRVVIARALILDPKLVIFDE 180
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
AVS LD S + V+ LL + + + +FITHDL + ++ D ++MY G +VE G+ +
Sbjct: 181 AVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGDIK 240
Query: 238 KVFHNPLHPYTKMLLESVPDLNVKWEFKGIEP----EKEEGKVWKIKGCRYAPRCPKAKD 293
V+ P HPYT+ LL SVP ++ + IEP E + GKV + GC + RCP A +
Sbjct: 241 SVYAWPRHPYTRALLASVPTMDP--TVRNIEPPIKGELDAGKV--MTGCAFRSRCPFAIE 296
Query: 294 VCFKIRPTLIEVEKNHWVACH 314
C K P L+ ACH
Sbjct: 297 RCAKETP-LLRPAGGQLAACH 316
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 182 bits (458), Expect = 4e-45
Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 14/304 (4%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP----TSGRILFEGKDIMKFS 77
V +V+GVSF + GE V++VGESG GK+ I+ L+ G I F G+D+ S
Sbjct: 23 VPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGKIVGGDIRFNGQDLTTIS 82
Query: 78 KKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEV 137
++E + ++ +FQ+P S NPL + + + + +EE ++ + L++V
Sbjct: 83 EREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQH-QQVTKEEAKQKGIEMLKKV 141
Query: 138 GLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGE 196
G+ +E V YPHQLSGG QR++IA AL +P+LLIADE + LD + + +L L+ +
Sbjct: 142 GIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTTALDVTIQAQILQLMRK 201
Query: 197 FRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVP 256
+ T++L ITHDL + ++D+ I+MY G +VE + +F P HPYT+ LL S P
Sbjct: 202 LVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTLFATPAHPYTQGLLASTP 261
Query: 257 DLNVKWE----FKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVA 312
+++ E +G P E KGCR+ PRC A + C P L++ + V
Sbjct: 262 NIHASGEKLQSIEGTVPTHET----MPKGCRFFPRCLHATEQCVHQEPPLMKTGRGQHVR 317
Query: 313 CHLY 316
C L+
Sbjct: 318 CWLF 321
>pir||S75333 oligopeptide transport protein oppF - Synechocystis sp. (strain
PCC 6803) >gi|1652324|dbj|BAA17247.1| (D90904)
oligopeptide transport ATP-binding protein OppF
[Synechocystis sp.]
Length = 650
Score = 182 bits (457), Expect = 5e-45
Identities = 102/259 (39%), Positives = 158/259 (60%), Gaps = 5/259 (1%)
Query: 2 LLEVQNLTKIF-TSGLIGGYQV-RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LLEVQNLT + GL G V +AV+ VSF + GE + LVGESG GK+T+ + +LRL
Sbjct: 381 LLEVQNLTVSYGQGGLFGKKSVFKAVNDVSFQVYPGETLGLVGESGCGKSTLARALLRLT 440
Query: 60 TPTSGRILFEGKDIMKFSKKELKTYYYRK-VQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
+GRI+F+G+++ +K + R+ +Q +FQ+P+ S NP + + +
Sbjct: 441 PIQTGRIIFDGQNVAALPEKSQQWRRLRREMQIIFQNPYNSLNPRMTIGRAIQEPLIIHE 500
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
P +++ + + + LE VG++P +YPH+LSGGQ QRI IARAL L PR +I DE+
Sbjct: 501 PKQSTKQQRQRVAELLERVGISPQWFN-RYPHELSGGQRQRICIARALALNPRFIICDES 559
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE-MGETE 237
VS LD S + VLNLL E + + +FI+HDL++ ++ D ++M RG + E + +
Sbjct: 560 VSALDVSVQAQVLNLLKELQRDLQLTYIFISHDLSVVRFMGDRIMVMNRGQLAEPINTAQ 619
Query: 238 KVFHNPLHPYTKMLLESVP 256
++ NP YTK L++S+P
Sbjct: 620 EIIENPQSAYTKKLIQSIP 638
Score = 140 bits (350), Expect = 2e-32
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 48/284 (16%)
Query: 24 AVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL-----TPTSGRILFEGK------D 72
AV GV F + GEI+ +VGESGSGK+ I+ L+ S I F + +
Sbjct: 59 AVKGVDFELERGEILGIVGESGSGKSVTSLGIMGLVPKPGWVEPSSEIDFFAQAQSSPVN 118
Query: 73 IMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVD-KVFHMIFDSYFPDLGREEREEMID 131
++ + + + Y K+ +FQ+P +S NP++ + ++ I ++ +EE +
Sbjct: 119 LVALPEGDKRQYRGGKIAMIFQEPMSSLNPVYTIGFQIIEAI--RLHQNVTQEEAQNQAI 176
Query: 132 KALEEVGLNP--------------SEVRGK-------------------YPHQLSGGQLQ 158
L+EV + P ++ RGK YPH+LSGGQLQ
Sbjct: 177 ALLQEVRVLPKDEVLEEEFLAQEQAQPRGKVTQNLASYIQQRKQSFLKRYPHELSGGQLQ 236
Query: 159 RILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEF-RDKYGTSVLFITHDLALGYY 217
R++IA A+ PRLLIADE + LD + + ++L LL + + S++FI+HDL +
Sbjct: 237 RVMIAMAISANPRLLIADEPTTALDVTVQAEILRLLRDLCKQHQEMSLIFISHDLGVINE 296
Query: 218 ISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVK 261
I+D +MYRG IVE G E++ H+P HPYTK LL P L ++
Sbjct: 297 IADRVAVMYRGEIVEQGLKEQILHSPQHPYTKGLLACRPRLEIQ 340
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 182 bits (456), Expect = 7e-45
Identities = 102/300 (34%), Positives = 164/300 (54%), Gaps = 11/300 (3%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP----TSGRILF--EGKD--I 73
+RAVD VS E E+ + GESG GK+T+ K++ + P G ++F +G++ I
Sbjct: 25 IRAVDNVSLHFFENEVYGIAGESGCGKSTLLKVLFGEIKPPLKLVDGEVVFKLDGEEYRI 84
Query: 74 MKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKA 133
S +LK ++ V V Q + NP+ ++ ++F + + + + REE I+
Sbjct: 85 NSMSLDQLKKIRWKYVSYVPQGSMSVLNPVRKIRRIFLDVIEEH-TSMSREEAFSRIESY 143
Query: 134 LEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNL 193
E +GL P V YPHQLSGG QR+ IA A +L P+++ ADE + LD + V+ L
Sbjct: 144 FEALGL-PVRVLDSYPHQLSGGMRQRVTIALATVLNPKVIFADEPTTALDVVVQRGVIQL 202
Query: 194 LGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLE 253
L + + +++ +THD+ + +++ +MY G ++E ET ++F NPLHPYT+ L+
Sbjct: 203 LKKIHKEQKNTLVIVTHDMGVHAHLATRIGVMYAGRLIEEAETHEIFKNPLHPYTRFLIN 262
Query: 254 SVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
S+P + +G P GC + PRCP A +C ++ P LIEV +NH VAC
Sbjct: 263 SLPRFGDRSRKEG-TPGSPPSLANLPSGCPFHPRCPIADQICMEMEPDLIEVARNHKVAC 321
>pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC1094 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655563|gb|AAF94253.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 324
Score = 180 bits (453), Expect = 2e-44
Identities = 107/319 (33%), Positives = 173/319 (53%), Gaps = 14/319 (4%)
Query: 2 LLEVQNLTKIFTS--GLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LL+V++L F++ G+ V AV+ ++F++ +GE + +VGESGSGK+ I+ LL
Sbjct: 4 LLDVKDLRVEFSTQDGI-----VTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLL 58
Query: 60 TPT---SGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFD 115
+G FEGK+I+ ++EL ++ +FQDP S NP +V D++ ++
Sbjct: 59 AKNGKITGSAKFEGKEILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLM- 117
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLI 174
+G+ E E + LE V + + R YPH+ SGG QR++IA ALL +P+LLI
Sbjct: 118 -LHKGMGKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLI 176
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
ADE + LD + + ++ LL E + ++ T+++ ITHDL + D ++MY G +E G
Sbjct: 177 ADEPTTALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYG 236
Query: 235 ETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
+F+NP HPY + LL ++P L+ + E P + GC Y RC + D
Sbjct: 237 SVNDIFYNPSHPYAEGLLSAIPRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDR 296
Query: 295 CFKIRPTLIEVEKNHWVAC 313
C + P L+ + AC
Sbjct: 297 CKREAPILLPFGNSRQRAC 315
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 179 bits (450), Expect = 3e-44
Identities = 113/328 (34%), Positives = 173/328 (52%), Gaps = 22/328 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQ-VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
L+E +NL + G + +RAVD VS I GEI + GESG GK+T+ K +L L
Sbjct: 4 LVEGKNLKAYYVLEFWGKKRTIRAVDNVSLKIFSGEIYGIAGESGCGKSTLLKTLLANLE 63
Query: 61 PTSGRILFEGK----------DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVF 110
P LF G+ +++ ++E + +R + + Q NP+ ++ F
Sbjct: 64 PPLR--LFGGELNYWLDSKPVNVVSLKEEERRRLKWRFISYIPQGSMHVLNPVKRIRDTF 121
Query: 111 HMIFDSYFPDLGREEREEMIDKALEEV---GLNPSEVRGKYPHQLSGGQLQRILIARALL 167
I S+ R ++E ++ A+E + GL PS V +PHQLSGG QR+ IA A L
Sbjct: 122 MEILKSHV----RRQKETFLEMAIEHLKALGL-PSRVLDMFPHQLSGGMRQRVTIALATL 176
Query: 168 LKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYR 227
LKPR+++ADE + LD + V+ L+ + + + +++ +THD+ + ++ IMY
Sbjct: 177 LKPRIILADEPTTALDVVAQRAVIQLIKKIQKELKNTIVLVTHDMGIHAQVTTRMAIMYA 236
Query: 228 GTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPR 287
G IVE G T ++F PLHPYT+ L++S+P + K +GI P V GCR+ PR
Sbjct: 237 GKIVEEGPTLEIFKEPLHPYTRYLIQSLPRVGDKQLREGI-PGSPPSLVSPPSGCRFHPR 295
Query: 288 CPKAKDVCFKIRPTLIEVEKNHWVACHL 315
CP A C + P +EV H AC L
Sbjct: 296 CPHATQRCEEEEPVFLEVNPGHRAACFL 323
>pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376984|gb|AAD18822.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189001|gb|AAF37953.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979055|dbj|BAA98890.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 179 bits (450), Expect = 3e-44
Identities = 117/298 (39%), Positives = 168/298 (56%), Gaps = 13/298 (4%)
Query: 23 RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTSGRILFEGKDIMKFSKKELK 82
R VD VSF++ V L+GESGSGK+T+ + LL TSG + F G I K K +
Sbjct: 34 RPVDDVSFSLYSRRAVGLIGESGSGKSTLALALAGLLPLTSGFLTFNGTPI-KLHSKHGR 92
Query: 83 TYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNP 141
+V+ VFQ+P AS NP + D + H + Y + +E+ + + LE VGL+
Sbjct: 93 HQLRSQVRLVFQNPQASLNPRKTILDSLGHSLL--YHKLVPKEKVLATVREYLELVGLS- 149
Query: 142 SEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKY 201
E +YPHQLSGGQ QR+ IARALL P+L+I DE VS LD S + +LN+L E + K
Sbjct: 150 EEYFYRYPHQLSGGQQQRVSIARALLGVPQLIICDEIVSALDLSIQAQILNMLAELQKKL 209
Query: 202 GTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLES-VPDLNV 260
+ LFI+HDLA+ IMY+G IVE G T+++F +P HPYT+MLL + +P+
Sbjct: 210 SLTYLFISHDLAVVRSFCTEVFIMYKGQIVEKGNTKRIFSDPQHPYTRMLLNAQLPETPD 269
Query: 261 KWEFKGIEPE-KEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQ 317
+ + K I E ++ + GC + RCP+ ++ C E+ N A H Y+
Sbjct: 270 QRQSKPIFQEYHKDSEESCSTGCYFYNRCPQKQEACKS------EIIPNQGDAHHTYR 321
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 179 bits (450), Expect = 3e-44
Identities = 115/320 (35%), Positives = 176/320 (54%), Gaps = 14/320 (4%)
Query: 2 LLEVQNLTKIFTSGLIGGY----QVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
+L V+N T+ ++ + +V+AV VSFT+ GE +VGESG GK+T+ +L+
Sbjct: 278 VLTVENATRTYSVRRRDAFNAFNEVKAVRDVSFTVKAGENFGIVGESGCGKSTLTRLLAW 337
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
L P +GRI F GK++ S + L T + Q + QDP+ S L + MI +
Sbjct: 338 LEQPNAGRIAFLGKNLSNLSARSL-TEMRKSFQLLLQDPYGS---LPAGMSIIRMIEEPL 393
Query: 118 F-PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
+ R + E+ +A+ EVGL+ +++ + P LS GQ QRI IARAL+LKPRLLI D
Sbjct: 394 LIHGVARRDAEQRAQEAMREVGLH-ADLAERLPVGLSAGQRQRINIARALVLKPRLLILD 452
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E +S LD + ++L+L + +G S +FI+HDLAL I +MY G IVE+ +
Sbjct: 453 ETLSALDQVEQAELLDLFKRLQAAHGFSYIFISHDLALVRRICHRVAVMYLGRIVELADN 512
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE---PEKEEGKVWKIKGCRYAPRCPKAKD 293
+ +F +P HPYT+ LL ++P L F G + + + GC + RCP+A+
Sbjct: 513 KTLFEHPHHPYTRALLSAMPTLEEN-RFPGAQYLLDGEPPSPIHLPVGCSFRSRCPRAQS 571
Query: 294 VCFKIRPTLIEVEKNHWVAC 313
C K P L + ++ AC
Sbjct: 572 DCEKTDPMLEGSDGGNYAAC 591
Score = 143 bits (357), Expect = 3e-33
Identities = 86/280 (30%), Positives = 148/280 (52%), Gaps = 14/280 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L V NL+ L G + R VD V F + GE++ LVGE+GSGK+ + + ++ +
Sbjct: 5 ILAVSNLS---VDLLRDGSKRRIVDNVDFALQPGEVLGLVGEAGSGKSVLARAMVNAIQA 61
Query: 62 ----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
+SG+++FEGKD++ + L++ ++ + +P S +P + S
Sbjct: 62 PLDISSGQVIFEGKDVLSLDARGLRSIRGNRIGFIGANPMGSLDPRLPIGHQIVEKLRSV 121
Query: 118 FPDLGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
PD+G+ E +E + L V + +P + P Q SGG +QR++I AL+ +P L+IAD
Sbjct: 122 RPDIGKAEAKEKVLDLLGRVHIPSPRSRFHEAPFQFSGGMMQRVMIVDALVSEPSLVIAD 181
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
LD + ++ L+ R+ T+ LFI+ L + I++ T++M G IVE GET
Sbjct: 182 NITQPLDVTVAAQIIRLIDNLRESLDTAFLFISSSLPVVSKIAERTLVMQGGRIVEQGET 241
Query: 237 EKVFHNPLHPYTKMLLESVPDLNVKWEFKGIE-PEKEEGK 275
+ NP YT+ LL +P + +K + PE ++G+
Sbjct: 242 ADIAANPQQAYTRALLSRIPSI-----WKNVSAPEAKDGE 276
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 179 bits (449), Expect = 4e-44
Identities = 115/328 (35%), Positives = 176/328 (53%), Gaps = 18/328 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQV-RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
L+ +NL + L G +V +AVD VS I EI + GESG GK+T+ K +L LL
Sbjct: 4 LISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLALLD 63
Query: 61 PT----SGRILF--EGK--DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHM 112
P G +L+ EG+ ++ + ++ + + + Q NP+ +V F
Sbjct: 64 PPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDTFIE 123
Query: 113 IFDSYFPDLGREEREEMIDKA---LEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLK 169
I S+ +++ +E +D A L+++GL P V +PHQLSGG QR+ IA A +LK
Sbjct: 124 ILSSHV----KKQTKEFLDLAVQHLKDLGL-PERVLNMFPHQLSGGMRQRVTIALATVLK 178
Query: 170 PRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGT 229
PR++ ADE + LD + V+ L+ + ++ +V+ +THD+ + I+ IMY G
Sbjct: 179 PRVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYAGK 238
Query: 230 IVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCP 289
IVE G T ++F NPLHPYT+ L++S+P + K GI P V GCR+ PRCP
Sbjct: 239 IVEEGPTLEIFKNPLHPYTRYLIQSLPAIGDKKLRSGI-PGSPPSLVAPPPGCRFHPRCP 297
Query: 290 KAKDVCFKIRPTLIEVEKNHWVACHLYQ 317
A C + P L E++ H VAC L +
Sbjct: 298 HASQRCREEEPLLKEIKPGHKVACFLME 325
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 178 bits (448), Expect = 6e-44
Identities = 111/331 (33%), Positives = 174/331 (52%), Gaps = 20/331 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L ++NL +F + +RAVDG+S +I+ GE + +VGESGSGK+ + I+ L+
Sbjct: 18 ILSIRNLQTVFRTD---HEHIRAVDGISLSISPGETLGIVGESGSGKSVTARSIMGLVDA 74
Query: 62 TS-----GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
I+F+G ++ + S + + V +FQDP S NP++ V
Sbjct: 75 PGEVLPESSIVFDGTELTELSADQYQEVRGSGVGMIFQDPLKSLNPVYTVGNQIREALRI 134
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIA 175
G+E + ID LE+V + E R +YP++ SGG QR +IA L P +LI
Sbjct: 135 NRGITGQEATDVAID-LLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMMLACDPDVLIC 193
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + ++ LL + + + ++LFITHD+ + ISD +MY G VE
Sbjct: 194 DEPTTALDVTIQAQIVELLQDIQAERDLAILFITHDMGVIAEISDRVNVMYAGEFVEKAP 253
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWE----FKGIEPEKEEGKVWKIKGCRYAPRCPKA 291
E++F NP HPYT+ LL+++P +V E +G P + CR+APRCPKA
Sbjct: 254 VEELFANPKHPYTQGLLDAIPGTSVDDERLNTIEGDVPTPNQ----PATDCRFAPRCPKA 309
Query: 292 KDVCFKIRPTLIEVE--KNHWVACHLYQSSR 320
+ C ++ PT + V +H AC LY +
Sbjct: 310 FEDCTEVHPTHVSVSDTHDHSTACLLYPEGK 340
>sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075084|pir||C64184 oligopeptide transport
ATP-binding protein oppD - Haemophilus influenzae
(strain Rd KW20) >gi|1574676|gb|AAC22775.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppD)
[Haemophilus influenzae Rd]
Length = 323
Score = 178 bits (447), Expect = 8e-44
Identities = 105/325 (32%), Positives = 176/325 (53%), Gaps = 17/325 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+V+NL F + V AV+ ++FT+N G + +VGESGSGK+ ++ LL
Sbjct: 4 LLDVKNLYVRFKTP---DGVVTAVNDLNFTLNAGSTLGIVGESGSGKSQTAFALMGLLAA 60
Query: 62 TS---GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
G +FEGK+++ EL ++ +FQDP S NP ++ + + +
Sbjct: 61 NGEVEGSAIFEGKELVNLPNAELNKIRAEQISMIFQDPMTSLNPYMKIGEQLMEVLQLH- 119
Query: 119 PDLGREEREEMID--KALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIA 175
G +++ + K L+ V + ++ R G YPH+ SGG QR++IA ALL +P+LLIA
Sbjct: 120 --KGYDKQTAFAESVKMLDAVKMPEAKKRMGMYPHEFSGGMRQRVMIAMALLCRPKLLIA 177
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + + ++ LL E + ++ T+++ ITHDL + I D ++MY G +E G
Sbjct: 178 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDQVMVMYAGRTMEYGT 237
Query: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
E++F++P HPY+ L++++P L+ E P + KGC ++PRC A + C
Sbjct: 238 AEQIFYHPTHPYSIGLMDAIPRLDGNEEHLVTIPGNPPNLLHLPKGCPFSPRCQFATEQC 297
Query: 296 FKIRPTLIEVE----KNHWVACHLY 316
+I P L +N W++ +
Sbjct: 298 -QIAPKLTTFNHGQLRNCWLSAEKF 321
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 177 bits (445), Expect = 1e-43
Identities = 117/333 (35%), Positives = 179/333 (53%), Gaps = 23/333 (6%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
++EV+NL K++ G V+A++ VSF I GE LVGE+G GK+ + + RL+ P
Sbjct: 9 IIEVENL-KVYFYTYAG--IVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYP 65
Query: 62 TSGRILFEGK-----------DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVF 110
GRI+ EGK DIM +KEL+ ++ +FQDP A+ +PL+ +
Sbjct: 66 P-GRIV-EGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIG--- 120
Query: 111 HMIFDSYFPDLGREEREEMIDKA---LEEVGLNPSEVRGK-YPHQLSGGQLQRILIARAL 166
+ + ++ E + +A L+ V + E R K YPH+LSGG QR +I +L
Sbjct: 121 YQVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISL 180
Query: 167 LLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMY 226
+P+LLIADE + LD + + +++LL + + ++G ++L ITH+L L D +MY
Sbjct: 181 SNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMY 240
Query: 227 RGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAP 286
G IVE +++F NPLHPYT+ L+ +VP+ K E P + GCR+ P
Sbjct: 241 AGNIVEEAPVDELFSNPLHPYTRALIRAVPNPLAKIENLEHIPGTVPNLITPPPGCRFHP 300
Query: 287 RCPKAKDVCFKIRPTLIEVEKNHWVACHLYQSS 319
RCP A D C + +P L E H AC + S
Sbjct: 301 RCPLAFDRCSREKPLLKEYSPGHKAACWALEKS 333
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 174 bits (436), Expect = 1e-42
Identities = 113/335 (33%), Positives = 173/335 (50%), Gaps = 28/335 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LL V NL F + V++VDGV+F I +GE +++VGESGSGK+ ++RL+
Sbjct: 32 VLLAVNNLKTYFNTD---DGVVKSVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRLIP 88
Query: 61 P-----TSGRILFEGKD-----IMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKV 109
G ILF GKD ++ S+ E++ + +FQ+P S NP++ V D++
Sbjct: 89 MPPGQIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLNPVYTVGDQI 148
Query: 110 FHMIFDSYFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLL 168
+ R+E ++ L VG+ E R +YPHQ+SGG QR++IA AL
Sbjct: 149 AEAVV--LHQGKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALSC 206
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG 228
KP LLIADE + LD + + +L+L+ + + G S+LFITH+L + ++D ++MY G
Sbjct: 207 KPALLIADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMADRVVVMYGG 266
Query: 229 TIVEMGETEKVFHNPLHPYTKMLLESVPDLN----------VKWEFKGIEPEKEEGKVWK 278
+VE G+ ++F P HPYT LL S+P + K + I P +
Sbjct: 267 RVVEEGDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAI-PGNVPNPLNL 325
Query: 279 IKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVAC 313
GC + PRC A C + P L + H C
Sbjct: 326 PPGCTFEPRCKFAVPQCSQAVPALEDTGGGHMARC 360
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 172 bits (432), Expect = 4e-42
Identities = 106/303 (34%), Positives = 163/303 (52%), Gaps = 19/303 (6%)
Query: 23 RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP----TSGRILFEGKDIMKFSK 78
+AVD +S+ + +GE++ +VGESGSGK+ I+ L+ ++ + FE D++
Sbjct: 21 KAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFENTDLLTLES 80
Query: 79 KELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLG--REEREEMIDKALEE 136
K + V +FQDP S NP + V I ++ G ++ R++ + L+
Sbjct: 81 KAKRQLIGADVAMIFQDPMTSLNPAYTVG---FQIMEALKTHEGGTKKARKDRTLELLKL 137
Query: 137 VGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLG 195
VG+ E R YPHQLSGG QR++IA A+ +P+LLIADE + LD + + ++ LL
Sbjct: 138 VGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIMELLL 197
Query: 196 EFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESV 255
E + K S++ ITHDLAL ++ I+MY G IVE G + +F P HPYT+ LL S+
Sbjct: 198 ELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKDIFREPKHPYTQALLRSL 257
Query: 256 PDL----NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWV 311
P+ + +G+ P GK + GC PRCP A + C ++ P L + V
Sbjct: 258 PEFAEGKSRLESLQGVVP----GKYDRPTGCLLNPRCPYATEYCRQVEPQLHHIGSRK-V 312
Query: 312 ACH 314
CH
Sbjct: 313 KCH 315
>pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei
>gi|1491738|emb|CAA62801.1| (X91502) ABC transporter
[Methanosarcina mazei]
Length = 317
Score = 171 bits (429), Expect = 1e-41
Identities = 113/323 (34%), Positives = 172/323 (52%), Gaps = 23/323 (7%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LLEV+NL F +G V A+ G+SF+I E E ++LVGE+G GK+ I+RLL P
Sbjct: 9 LLEVKNLQVSF----LGIKTVTALSGISFSIGERETLALVGETGCGKSVAAHAIMRLLPP 64
Query: 62 TSG---RILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
SG + G++++ S+KE+ +++ +FQ+P + NP++ + H + +
Sbjct: 65 ESGVKGTVELRGRNLLGLSEKEMTEIRGKEIGIIFQNPSLALNPVYSIG---HQLAEPL- 120
Query: 119 PDLGREEREEMI----DKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
L R+E+++ +AL+ +G N E+ YP SGG QR LIA + +L P LL
Sbjct: 121 -RLHRKEKKKKALSRAAEALKNMGFANTGEIINYYPSWCSGGMNQRFLIAASTILDPALL 179
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
IADE LD S ++ L +++ T++L I+HDL ++D +MY G IVE+
Sbjct: 180 IADEPGKGLDRSCLSELEAGLKRLKEEKKTALLLISHDLGFVRNLADRVAVMYAGEIVEI 239
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
++ +F PLHPYTK LL S+P+ G P GCR+ PRCP K
Sbjct: 240 ADSSGIFEEPLHPYTKGLLNSLPEKGF-IPIPGFSPPLSR----LPSGCRFHPRCPLRKR 294
Query: 294 VCFKIRPTLIEVEKNHWVACHLY 316
C + +P +IE V C LY
Sbjct: 295 CCIENQPEIIET-NGRAVRCFLY 316
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 166 bits (417), Expect = 3e-40
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 16/327 (4%)
Query: 4 EVQNLTKIFTSGLIGGYQV-RAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPT 62
E+ K G + Y + + + VS I E +I+ + GESGSGK+T+ I+ + P
Sbjct: 3 EISISVKNLNVGYLSDYGIIKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPP 62
Query: 63 ----SGRILFEGK-DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS- 116
G I+ + K DI+ S+ EL + V Q S NP+ +V + F I +
Sbjct: 63 LYVERGSIIVDSKYDILSMSRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKAK 122
Query: 117 ---YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
Y+ ++ +++ LEEVGL +V YP QLSGG QR++IA +LLL P++L
Sbjct: 123 GMDYYANI------DVVYNTLEEVGLTDRQVLDMYPFQLSGGMKQRVVIAISLLLNPKIL 176
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
I DE + LD + ++L LL + + + +++ I+HD+A+ + ISD +MY G IVE
Sbjct: 177 IMDEPTTGLDVVVQYEILKLLKKIQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEY 236
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
G+ + HPYT +LL SVP + + + P EG + KGC ++ RCP
Sbjct: 237 GKYNTLLEEAYHPYTYLLLSSVPTVRSRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTS 296
Query: 294 VCFKIRPTLIEVEKNHWVACHLYQSSR 320
C ++ P ++ +K + C Y R
Sbjct: 297 TCKEVPPQIVAYDKFGFYKCIRYPEWR 323
>gb|AAD48154.1|AF086618_1 (AF086618) ABC transporter homolog [Loofah witches'-broom
phytoplasma]
Length = 315
Score = 163 bits (408), Expect = 3e-39
Identities = 93/263 (35%), Positives = 158/263 (59%), Gaps = 12/263 (4%)
Query: 1 MLLEVQNLTKIFTSGLI---GGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
+L+E +NL+K F + ++A D +S +I++G+ +++VG GSGK+T+G+ +L+
Sbjct: 11 ILIECKNLSKFFFRKKLFAKSSIFLKANDDISLSIHKGQTLAVVG--GSGKSTLGQTLLQ 68
Query: 58 LLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFD 115
L TSG++++ K+ + EL T + +Q +FQ+P+ S NP + + ++
Sbjct: 69 LEKSTSGKVIYY-KEQQSINLSELST---KDLQIIFQNPYLSLNPKILISDIIGEGLLIH 124
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
+ ++ I +++ G+ E+ + QLSGG+ QRI IAR L+++P+ ++
Sbjct: 125 NLVKSKNDPLYKQKILDIMKKCGVK-EELYNRSLAQLSGGERQRIAIARTLIIEPKFIVC 183
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE VS+LD + + +L LL + + Y ++LFITHDL + Y+SD IMY G +VE+G
Sbjct: 184 DEIVSLLDVTIQKQILELLKQLKKNYELTLLFITHDLGVAKYLSDQIAIMYLGKLVELGP 243
Query: 236 TEKVFHNPLHPYTKMLLESVPDL 258
TEK+F NP HPYT LL S+P L
Sbjct: 244 TEKIFTNPQHPYTIELLNSIPKL 266
>dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus]
Length = 331
Score = 162 bits (407), Expect = 4e-39
Identities = 113/328 (34%), Positives = 173/328 (52%), Gaps = 23/328 (7%)
Query: 2 LLEVQNLT-KIFT-SGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LL++++LT +I T GL V+AVD +S T+NEGEI LVGESGSGK+ + K I+ +
Sbjct: 3 LLDIRHLTIEIETPQGL-----VKAVDRMSLTLNEGEIRGLVGESGSGKSLVAKAIVGVS 57
Query: 60 TP----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDK-VFHMIF 114
T+ R+ D+++ + KE + R + +FQ+P +P +V + + I
Sbjct: 58 KDNWRITADRMRLGNIDLLQLTPKERRRVIARDIAMIFQEPSTCLDPSEEVGRQLIESIP 117
Query: 115 DSYFPDLGREE---REEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKP 170
F E R++ L +VG+ + + G YP++L+ G+ Q+++IA A+ KP
Sbjct: 118 SRAFEGKWWERFKWRKKQAIALLHKVGIKDHKRLMGSYPYELTDGECQKVMIAMAIATKP 177
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
+LLIADE + LD T+ +L LL T++L I HDLA + +MY G
Sbjct: 178 KLLIADEPTNDLDPITQSQILRLLSRMNQLNNTTILLIGHDLATITQWAGRITVMYCGQS 237
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIK----GCRYAP 286
VE +T K+ P HPYT LL+++PD N W + + G + ++ GCR P
Sbjct: 238 VESADTSKIIAAPKHPYTDALLKAMPDFN-DWVPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
Query: 287 RCPKAKDVCFKIRPTLIEVEKNHWVACH 314
RCP A+ C +I T KNH CH
Sbjct: 297 RCPYAQKQCVEIPHT--RRIKNHKFNCH 322
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 161 bits (402), Expect = 1e-38
Identities = 100/320 (31%), Positives = 166/320 (51%), Gaps = 12/320 (3%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL-- 59
LL V NL F++ V A +GVS I GE + +VGESGSGK+ + + +L LL
Sbjct: 6 LLSVDNLNVTFSTPR---GNVVANNGVSLQIAGGETLGIVGESGSGKSVLCRALLGLLPS 62
Query: 60 ---TPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFD 115
T + R++F G++++ + E++ +++ VFQ+P +S NP+ + D++ +
Sbjct: 63 PPATIRADRLVFAGRNMLSLTAAEMRAVRGQEISMVFQNPMSSLNPVWPIGDQISEGL-- 120
Query: 116 SYFPDLGREEREEMIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLI 174
+G + AL VG+ E+R YPHQ SGG QR +IA A++ +P+LL+
Sbjct: 121 RVHRGIGNAQARSAAIAALRRVGIPSPEIRVDDYPHQWSGGMAQRAVIAMAMIGEPKLLL 180
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
ADE + LD + + +L+LL + + + G +++ ++HD+++ D+ +MY G +VE G
Sbjct: 181 ADEPTTALDVTIQDQILSLLMQLQRETGMAIVLVSHDMSVISETCDNVAVMYAGGVVETG 240
Query: 235 ETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDV 294
T +F P HPYT LL S+P + + + P + GC + RC A
Sbjct: 241 RTTDIFRTPSHPYTAGLLNSIPPIKGRADKLASIPGQPPDLARLGPGCPFFERCSVASAE 300
Query: 295 CFKIRPTLIEVEKNHWVACH 314
C L + ACH
Sbjct: 301 CQTRPVALKRLASGQQTACH 320
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 159 bits (399), Expect = 3e-38
Identities = 106/314 (33%), Positives = 165/314 (51%), Gaps = 16/314 (5%)
Query: 19 GYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLIL----RLLTPTSGRILFEGKDIM 74
G V+AVDG+SF + G+ + +VGESGSGK+ +L R T G I +G+++
Sbjct: 33 GGVVKAVDGLSFDLERGKTLGIVGESGSGKSVTNLAVLGLHDRRRTAIDGSITLDGQELT 92
Query: 75 KFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKAL 134
S+K+L+ +K+ +FQD + +P + V + F + ++ R ID L
Sbjct: 93 DASEKQLEKLRGKKMAMIFQDALTALSPYYTVGRQIAEPFMKHNGASKKDARCGAID-LL 151
Query: 135 EEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNL 193
++VG+ +P + YPHQ SGG QR +IA AL P LLIADE + LD + + +L+L
Sbjct: 152 QKVGIPHPQKRVDDYPHQFSGGIGQRAMIAMALSCNPDLLIADEPTTALDVTVQAQILDL 211
Query: 194 LGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLE 253
L + + ++ ++++ ITHDL + ++D ++MY G VE G +V +P HPYT LL
Sbjct: 212 LKDLQQEFASAIIMITHDLGVVGNMADDIMVMYAGRAVERGTVREVLKSPQHPYTWGLLS 271
Query: 254 SVPDL--NVKWEFKGIEPEKEEGKVWKIKGCRYAPRCP----KAKDVCFKIRPTLIEVEK 307
S+P+L +V I P + GC + PRC + + C RPTL
Sbjct: 272 SMPNLTSDVDEPLMPI-PGSPPSLMNPPSGCAFHPRCGFTDLVSGERCSGERPTL---PH 327
Query: 308 NHWVACHLYQSSRE 321
ACHL R+
Sbjct: 328 GRAAACHLTGDQRQ 341
>pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656199|gb|AAF94833.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 159 bits (399), Expect = 3e-38
Identities = 110/328 (33%), Positives = 173/328 (52%), Gaps = 23/328 (7%)
Query: 2 LLEVQNLT-KIFT-SGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
LL++++LT +I T GL V+AVD +S T+NEGEI LVGESGSGK+ + K I+ +
Sbjct: 3 LLDIRHLTIEIDTPQGL-----VKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGIC 57
Query: 60 TP----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDK-VFHMIF 114
T+ R+ D+++ + +E + R V +FQ+P +P +V + + I
Sbjct: 58 KENWRVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIP 117
Query: 115 DSYFPDLGREE---REEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKP 170
F E R++ L +VG+ ++ YP++L+ G+ Q+++IA A+ KP
Sbjct: 118 FRTFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKP 177
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
+LLIADE + +D T+ +L LL TS+L I HDL +D +MY G
Sbjct: 178 KLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQS 237
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIK----GCRYAP 286
VE ET K+ P HPYT LL+++PD + W + + G + ++ GCR P
Sbjct: 238 VESAETAKIVAEPKHPYTAALLKAMPDFS-DWIPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
Query: 287 RCPKAKDVCFKIRPTLIEVEKNHWVACH 314
RCP A+ C ++ + KNH +CH
Sbjct: 297 RCPYAQRQCVEVPHS--RWVKNHKFSCH 322
>sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|628820|pir||S39588 peptide transport system
ATP-binding protein sapD - Salmonella typhimurium
>gi|414211|emb|CAA52287.1| (X74212) sapD [Salmonella
typhimurium]
Length = 330
Score = 158 bits (396), Expect = 7e-38
Identities = 109/331 (32%), Positives = 172/331 (51%), Gaps = 29/331 (8%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+++NLT F + G+ V+AVD VS T++EGEI LVGESGSGK+ I K I +
Sbjct: 3 LLDIRNLTIEFKTS--EGW-VKAVDRVSMTLSEGEIRGLVGESGSGKSLIAKAICGVAKD 59
Query: 62 ----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
T+ R+ F+ D+++ S +E + V +FQ+P + +P +V + ++
Sbjct: 60 NWRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAW 119
Query: 118 ------FPDLGREEREEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKP 170
+ LG +R + + L VG+ E +P++L+ G+ Q+++IA AL +P
Sbjct: 120 TYKGRWWQRLGWRKRRAI--ELLHRVGIKDHKEPMRSFPYELTDGECQKVMIAIALANQP 177
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
RLLIADE + ++ +T+ + LL T++L I+HDL + +D ++Y G
Sbjct: 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQT 237
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEKEEGKVWKIKGCR 283
VE ++ + P HPYT+ L+ ++PD K G P E+ + GCR
Sbjct: 238 VETAPSKDLVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPI----GCR 293
Query: 284 YAPRCPKAKDVCFKIRPTLIEVEKNHWVACH 314
PRCP A+ C I P L KNH ACH
Sbjct: 294 LGPRCPYAQRECI-ITPRLTGA-KNHLYACH 322
>sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|7445933|pir||F64877 peptide transport system
ATP-binding protein sapD - Escherichia coli
>gi|1279403|emb|CAA65940.1| (X97282) SapD protein
[Escherichia coli] >gi|1742104|dbj|BAA14844.1| (D90766)
Peptide transport system ATP-binding protein SapD
(fragment). [Escherichia coli]
>gi|1742113|dbj|BAA14852.1| (D90767) Peptide transport
system ATP-binding protein SapD (fragment). [Escherichia
coli] >gi|1742122|dbj|BAA14861.1| (D90768) Peptide
transport system ATP-binding protein SapD (fragment).
[Escherichia coli] >gi|1787548|gb|AAC74373.1| (AE000227)
putative ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 330
Score = 157 bits (393), Expect = 2e-37
Identities = 106/331 (32%), Positives = 170/331 (51%), Gaps = 29/331 (8%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
LL+++NLT F +G V+AVD VS T+ EGEI LVGESGSGK+ I K I +
Sbjct: 3 LLDIRNLTIEFKTG---DEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKD 59
Query: 62 ----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
T+ R+ F+ D+++ S +E + V +FQ+P + +P +V + ++
Sbjct: 60 NWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAW 119
Query: 118 ------FPDLGREEREEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKP 170
+ G +R + + L VG+ + +P++L+ G+ Q+++IA AL +P
Sbjct: 120 TYKGRWWQRFGWRKRRAI--ELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQP 177
Query: 171 RLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI 230
RLLIADE + ++ +T+ + LL T++L I+HDL + +D ++Y G
Sbjct: 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQT 237
Query: 231 VEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEKEEGKVWKIKGCR 283
VE ++++ P HPYT+ L+ ++PD K G P E+ + GCR
Sbjct: 238 VETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPI----GCR 293
Query: 284 YAPRCPKAKDVCFKIRPTLIEVEKNHWVACH 314
PRCP A+ C + P L KNH ACH
Sbjct: 294 LGPRCPYAQRECI-VTPRLTGA-KNHLYACH 322
>sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|1075118|pir||D64134 peptide transport system
ATP-binding protein HI1641 - Haemophilus influenzae
(strain Rd KW20) >gi|1574489|gb|AAC23288.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapD)
[Haemophilus influenzae Rd]
Length = 349
Score = 157 bits (392), Expect = 2e-37
Identities = 105/339 (30%), Positives = 180/339 (52%), Gaps = 31/339 (9%)
Query: 2 LLEVQNLT-KIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
LL++ NL +I TS +++ VDGV+ ++NEGEI LVGESGSGK+ I K+I +
Sbjct: 3 LLDICNLNIEIQTSN----GRIKIVDGVNLSLNEGEISGLVGESGSGKSLIAKVICNAIK 58
Query: 61 P----TSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDK-----VFH 111
T+ R F +++K S + + +++ +FQ+P + +P ++ K + +
Sbjct: 59 ENWIITADRFRFHDVELLKLSPNKRRKLVGKEISMIFQNPLSCLDPSRKIGKQLIQNIPN 118
Query: 112 MIF-DSYFPDLGREEREEMIDKALEEVGLNPS-EVRGKYPHQLSGGQLQRILIARALLLK 169
F + ++ G ++R + + L VG+ ++ YP++L+ G+ Q+++IA A+ +
Sbjct: 119 WTFKNKWWKWFGWKKRRAI--ELLHRVGIKDHRDIMASYPNELTEGEGQKVMIAMAVANQ 176
Query: 170 PRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGT 229
PRLLIADE + L+++T + V LL GT++L ++D+ D ++Y G
Sbjct: 177 PRLLIADEPTNALESTTALQVFRLLSSMNQNQGTTILLTSNDIKSISEWCDQISVLYCGQ 236
Query: 230 IVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFK-------GIEPEKEEGKVWKIKGC 282
E TE + +P HPYT+ L+ +VPD FK G P E+ + GC
Sbjct: 237 NTESAPTEILIESPHHPYTQALINAVPDFTQPLGFKTKLGTLEGTAPILEQMPI----GC 292
Query: 283 RYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQSSRE 321
R PRCP A+ C + +P +++ K H +CH + RE
Sbjct: 293 RLGPRCPFAQKKCME-KPRRLKI-KQHEFSCHYPINLRE 329
>pir||A82876 oligopeptide transport system permease protein UU560 [imported] -
Ureaplasma urealyticum
>gi|6899566|gb|AAF30973.1|AE002154_9 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 506
Score = 156 bits (391), Expect = 3e-37
Identities = 102/328 (31%), Positives = 171/328 (52%), Gaps = 14/328 (4%)
Query: 4 EVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPTS 63
E++N+ FT+ + + S EGE+ +++GESGSGK+ I L+ L +
Sbjct: 161 EIENVRLTFTNPSKPNDRALVLRNTSVQFYEGEVHAIIGESGSGKSVITSLLYGLAGKNA 220
Query: 64 ----GRILFEGKDIMKFSKK--ELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
G+IL ++ FS K E Y + + AVFQ+P ++ NP ++ K I +
Sbjct: 221 NVEEGKILLYNNEVQDFSFKDWEKSRYLGKVISAVFQNPMSTLNPTMKIGK---QIMEGM 277
Query: 118 FPDLGREEREEMIDKALEEVGL----NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
+ + R+E +K++E + L NP E+ YPH+LSGG +QR++IA + L P++L
Sbjct: 278 LINGIVKTRKEAYNKSIEYLKLTKINNPEEIMELYPHELSGGMIQRVVIASIVSLHPKIL 337
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
+ DE + LD + + VL+++ E ++K+ ++FITHDL + I++ IMY G I+E
Sbjct: 338 VLDEPTTALDPTVQALVLDVIRELQEKFKMCIIFITHDLGVVASIANYISIMYAGQIIEE 397
Query: 234 GETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKD 293
G+ +++ P HPYT L+ S+PD+N K + ++ I G +A R A
Sbjct: 398 GQRDEILWYPQHPYTWGLIMSMPDVN-KGDRLATIKGSVPSRLNDIVGDAFAIRNDYALT 456
Query: 294 VCFKIRPTLIEVEKNHWVACHLYQSSRE 321
F+ P + V + H V L E
Sbjct: 457 RDFEHEPEMYHVSETHRVKSALLDERAE 484
>dbj|BAB05518.1| (AP001513) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 266
Score = 156 bits (391), Expect = 3e-37
Identities = 98/261 (37%), Positives = 147/261 (55%), Gaps = 12/261 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M+L V+ +T +I VD VS I G+ +LVG+SGSGK+ + + I ++L
Sbjct: 1 MILSVEQVTIRSRENII-------VDQVSLQIRAGQWFALVGQSGSGKSLLSQAIGQMLA 53
Query: 61 PT---SGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
P G+I F+G+D+ S+KE++T K+ +FQD SF P + + F ++
Sbjct: 54 PNLQVEGKISFKGRDLFTLSRKEMRTLRGSKISYIFQDYQGSFTPFRTIAQHFEEYQKNH 113
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+E ++E + +AL+ VGL + +YP QLSGGQLQR+ IA ALLL P LLIADE
Sbjct: 114 TTRSAKERKDEAM-RALQSVGLEEI-LYHRYPFQLSGGQLQRVSIALALLLSPDLLIADE 171
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
A + LD+ + +L LL + + G ++LFITHD +D +M GTIVE G
Sbjct: 172 ATTALDSVSGHRILELLARRQRETGCAILFITHDWRHVRRYADHIAVMKEGTIVESGGKH 231
Query: 238 KVFHNPLHPYTKMLLESVPDL 258
+V + YTK L+++ P L
Sbjct: 232 RVLDHRRDDYTKQLIQAAPTL 252
>gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . amino-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 245
Score = 153 bits (382), Expect = 3e-36
Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 10/229 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQ---VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILR 57
++++VQN+ + G +G ++ V AV+ VS I +GEI L+GESGSGKTT+GK ILR
Sbjct: 6 IIVKVQNVWIKYPMGRVGLFRKLYVHAVNDVSLEIKKGEIFGLIGESGSGKTTLGKGILR 65
Query: 58 LLTPTSGRILFE---GK--DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHM 112
L+ SG I ++ GK DI K + L+ + Q + QDP+ + +P V ++
Sbjct: 66 LIETYSGSIYWKVDGGKLVDITKLNDNTLRRLR-KDFQIIQQDPYGALDPRMSVYEILAE 124
Query: 113 IFDSYFPDLGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPR 171
+ + E E I K L V L P E K P +LSGGQ QR+++ARALLL+P+
Sbjct: 125 GLRLHKLISNKSEEVEQIYKILSIVKLTPPENFANKKPMELSGGQRQRVVVARALLLRPK 184
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISD 220
++ADE +SMLDASTR +L + RD+ GT+ LFITHD+++ Y+SD
Sbjct: 185 FIVADEPISMLDASTRGQILEFILNDRDQRGTAYLFITHDISIASYVSD 233
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 152 bits (381), Expect = 4e-36
Identities = 94/301 (31%), Positives = 162/301 (53%), Gaps = 11/301 (3%)
Query: 28 VSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP----TSGRILFEGKDIMKFSKKELKT 83
++ + +G I+ + GESGSGK+T+ + I R L TSG++ + +DI++ + ++L+
Sbjct: 1 MNLRVRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQVYLDDQDILRINGEDLRR 60
Query: 84 YYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD-LGREEREEMIDKALEEVGLNPS 142
+ + P A+ N L+ V ++ + +D L E+ E+ I A++ V L +
Sbjct: 61 IRATRFSFI---PQAAMNALNPVKRIRYQFYDLLIAHGLQPEKNEDRIQAAIKMVRLREN 117
Query: 143 EVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYG 202
V +PH+LSGG QR++IA +LLL+P L+I DE + LD + ++L L + + G
Sbjct: 118 -VLESFPHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQSG 176
Query: 203 TSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKW 262
+++FITHDL++ Y I+D ++Y G IVE G +++ ++P HPY +LL S+P + K
Sbjct: 177 LTMIFITHDLSILYEIADEIAMIYAGEIVEFGPRDEMLNDPQHPYNFLLLRSMPRIGAK- 235
Query: 263 EFKGIEPEKEEGKVWK-IKGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLYQSSRE 321
G G + GC++ RCP + C P L + H+ C Y +
Sbjct: 236 RGTGYRLIGNPGNFREDFNGCQFYTRCPFSVPQCVSKHPELTSDDGRHFRRCLRYPEWKV 295
Query: 322 G 322
G
Sbjct: 296 G 296
>emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 388
Score = 143 bits (356), Expect = 4e-33
Identities = 100/325 (30%), Positives = 161/325 (48%), Gaps = 19/325 (5%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+L+V+NL F G + V GV ++ GEI+ LVGESGSGK+ K ++ +
Sbjct: 44 ILKVRNLHVSFPQG--HKKSIHIVRGVDLDVHRGEIIGLVGESGSGKSVTSKTLINV--N 99
Query: 62 TSGRILFEGKDIMKFSKKELKTYYY------RKVQAVFQDPFASFNPLHQVDKVFHMIFD 115
SG I + I ++ +K Y +K+ + QDP S NP V K +
Sbjct: 100 ESGIISADQIQIGEYELTNIKKQKYWQYIRGQKIGYIPQDPLTSLNPTRTVGKQLLDALN 159
Query: 116 SY--FPDLGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRL 172
+ + + E++ + L+ GL +E + YPH LSGG QRI+I + LKP L
Sbjct: 160 NNEDWKNSTYTEKKNYLIGLLKTFGLRSAEKIFYAYPHTLSGGMKQRIVITMVVALKPEL 219
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
+IADE + LD + + VL L + R K G S++ I+H++++ D +MY G IVE
Sbjct: 220 IIADEPTTALDPTVQASVLALFEDIRQKMGISIILISHNISVIAKFCDYIYVMYAGRIVE 279
Query: 233 MGETEKVFHNPLHPYTKMLLESVPDLNVK--WEFKGIEPEKEEGKVWKIKGCRYAPRCPK 290
G +++F NP HPYT L+ ++P+ + + +G P+ + G + R
Sbjct: 280 KGTKQEIFTNPAHPYTWALISAIPESKDEKLYTIQGTPPDMANLPL----GDPFVYRNDY 335
Query: 291 AKDVCFKIRPTLIEVEKNHWVACHL 315
A ++ + P LI + + H A L
Sbjct: 336 ALEIDYLKEPPLIPITETHAAATWL 360
>sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1361734|pir||G64208 oligopeptide transport
ATP-binding protein amiE - Mycoplasma genitalium
>gi|1045756|gb|AAC71297.1| (U39688) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Mycoplasma
genitalium]
Length = 402
Score = 142 bits (354), Expect = 6e-33
Identities = 106/335 (31%), Positives = 156/335 (45%), Gaps = 41/335 (12%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL--TPTSGRIL-FEGKDIMKFSK 78
+ AV G+ + G IV +VGESGSGK+ K I+ T +++ F+ DI K K
Sbjct: 38 LHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQTKAKLMNFKNVDITKLKK 97
Query: 79 KELKTYYYRKVQAVFQDPFASFNPLHQVDK-----VFHMIFDSYFP---DLGREEREEMI 130
+ K Y V + QDP S NP + K ++ YF DL + I
Sbjct: 98 HQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEI 157
Query: 131 DKA-----------------------------LEEVGLNPSEVRGK-YPHQLSGGQLQRI 160
DK L+ +G+N ++ R K +P + SGG QRI
Sbjct: 158 DKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRI 217
Query: 161 LIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISD 220
+IA A+ +P L+IADE + LD + + VL L+ + RD +++FI+H+++L D
Sbjct: 218 VIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCD 277
Query: 221 STIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIK 280
+MY G IVE G E++F NPLHPYT L+ S+P+ K + P + K
Sbjct: 278 FVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISSIPEQKDKNKPLTSIPGVIPNMLTPPK 337
Query: 281 GCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHL 315
G +A R A + F+ P EV K H A L
Sbjct: 338 GDAFASRNQYALAIDFEYHPPFFEVTKTHKAATWL 372
>pir||H64716 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
26695) >gi|2314761|gb|AAD08616.1| (AE000655) ABC
transporter, ATP-binding protein (abc) [Helicobacter
pylori 26695]
Length = 327
Score = 141 bits (352), Expect = 1e-32
Identities = 88/252 (34%), Positives = 142/252 (55%), Gaps = 13/252 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M++E++N+ KI+ +G A+ GV+ + +G+I+ ++G SG+GK+T+ +LI L
Sbjct: 1 MVVELKNIEKIYENGF------HALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLER 54
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P+SG +L G +++K KEL+ +K+ +FQ FN L + ++ F
Sbjct: 55 PSSGEVLVNGVNLLKLKPKELQKAR-QKIGMIFQH----FNLLSAKNVFENVAFALEIAR 109
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ + + + + LE VGL + YP QLSGGQ QR+ IAR+L P LL+ DEA S
Sbjct: 110 WEKNKIKSRVHELLELVGLE--DKMHFYPKQLSGGQKQRVAIARSLANCPDLLLCDEATS 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD+ T +L LL + K S++FITH++ + + + ++ G IVE G E++F
Sbjct: 168 ALDSKTTHSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGSVEEIF 227
Query: 241 HNPLHPYTKMLL 252
NP H TK LL
Sbjct: 228 ANPKHAVTKELL 239
>gb|AAC45666.1| (AF010307) AbcC [Helicobacter pylori]
Length = 327
Score = 140 bits (350), Expect = 2e-32
Identities = 89/252 (35%), Positives = 140/252 (55%), Gaps = 13/252 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M++E++N+ KI+ +G A+ GV+ + +G+I+ ++G SG+GK+T+ +LI L
Sbjct: 1 MVVELKNIEKIYENGF------HALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLER 54
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P+SG +L G +++K KEL+ +K+ +FQ FN L D ++ F
Sbjct: 55 PSSGEVLVNGVNLLKLKPKELQKAR-QKIGMIFQH----FNLLSAKDVFENVAFALEIAR 109
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ + + + + LE VGL YP QLSGGQ +R+ IAR+L P LL+ DEA S
Sbjct: 110 WEKTKIKSRVHELLELVGLEDKV--HFYPKQLSGGQKERVAIARSLANCPDLLLCDEATS 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD+ T +L LL + K SV+FITH + + + + ++ G IVE G E++F
Sbjct: 168 ALDSKTTHSILTLLSGIQKKLDLSVVFITHQIEVVKELCNQMCVISSGEIVERGSVEEIF 227
Query: 241 HNPLHPYTKMLL 252
NP H TK LL
Sbjct: 228 ANPKHAVTKELL 239
>pir||F71800 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4156118|gb|AAD07069.1| (AE001570) abc
transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 327
Score = 139 bits (348), Expect = 3e-32
Identities = 87/252 (34%), Positives = 140/252 (55%), Gaps = 13/252 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M++E++N+ KI+ +G A+ GV+ + +G+I+ ++G SG+GK+T+ +LI L
Sbjct: 1 MVVELKNIEKIYENGF------HALKGVNLELKKGDILGVIGYSGAGKSTLIRLINCLER 54
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P+SG +L G +++ KEL+ +K+ +FQ FN L + ++ F
Sbjct: 55 PSSGEVLVNGVNLLNLKPKELQKAR-QKIGMIFQH----FNLLSAKNVFENVAFALEIAR 109
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ + + + + LE VGL YP QLSGGQ QR+ IAR+L P LL+ DEA S
Sbjct: 110 WEKTKIKSRVHELLELVGLEDKV--HFYPKQLSGGQKQRVAIARSLANCPNLLLCDEATS 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD+ T +L LL + K+ S++FITH + + + + ++ G IVE G E++F
Sbjct: 168 ALDSKTTHSILTLLSGIQKKFDLSIVFITHQIEVVKELCNQMCVISSGEIVERGSVEEIF 227
Query: 241 HNPLHPYTKMLL 252
NP H TK LL
Sbjct: 228 ANPKHAVTKELL 239
>sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|2146480|pir||S73940 oligopeptide transport
ATP-binding protein oppD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674316|gb|AAB96262.1| (AE000058)
oligopeptide transport ATP-binding protein OppD
[Mycoplasma pneumoniae]
Length = 423
Score = 134 bits (335), Expect = 1e-30
Identities = 103/335 (30%), Positives = 162/335 (47%), Gaps = 41/335 (12%)
Query: 22 VRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL--TPTSGRIL-FEGKDIMKFSK 78
++AV GV + +G IV +VGESGSGK+ K I+ T+ +++ F+ DI K K
Sbjct: 38 MQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGFNDGAKTTAKLMNFKNIDISKMKK 97
Query: 79 KELKTYYYRKVQAVFQDPFASFNPLHQVDK-VFHMIFDS----YFP---DLGREEREEMI 130
+ + Y V + QDP S NP + + V I+ S Y+ DL + + E I
Sbjct: 98 HQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIYVSCKRRYYQTKSDLKYDLQTERI 157
Query: 131 D-----------------------------KALEEVGLNPSEVRGK-YPHQLSGGQLQRI 160
D + L +G++ +E R K +P + SGG QRI
Sbjct: 158 DLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEFSGGMRQRI 217
Query: 161 LIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISD 220
+IA A+ +P L+IADE + LD + + LNL+ + RD +++FI+H+++L D
Sbjct: 218 VIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCD 277
Query: 221 STIIMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIK 280
+MY G +VE G E++F NP+HPYT L+ S+P+ K P + K
Sbjct: 278 FVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMASIPEGTDKNAPLTSIPGYIPNMLSPPK 337
Query: 281 GCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHL 315
G +A R A + F+ +P +V + H A L
Sbjct: 338 GDAFAARNQFALAIDFEHQPPFFDVTETHKAATWL 372
>gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-binding; OppD1
[Halobacterium sp. NRC-1]
Length = 267
Score = 132 bits (329), Expect = 5e-30
Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 21/261 (8%)
Query: 72 DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH---MIFDSYFPDLGREEREE 128
D+ S+ L+ +++ +FQ+P NP++ V + I D P++ + +
Sbjct: 2 DLTTLSETALQDVRGKRISHIFQNPQNGLNPVYTVGRQIGEAIRIHDHGDPEV--PVQRQ 59
Query: 129 MIDKALEEVGLNPSEVR-GKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTR 187
++D L++ G+ + R YPH+ SGG QR+LIA AL P LLIADE + LD + +
Sbjct: 60 VVD-LLDKTGIPEASARVDDYPHEFSGGMKQRVLIAMALACDPDLLIADEPTTALDVTIQ 118
Query: 188 IDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPY 247
+L LL + + ++ ++F+THDL + I+D ++MY G ++E G E +F NP HPY
Sbjct: 119 GQILRLLEDLQAEHDMGIIFVTHDLGVVSEIADRVVVMYAGKVMETGTVEDIFRNPSHPY 178
Query: 248 TKMLLESVPDLNVKWEFKGIEPEKEEGKVWKI----KGCRYAPRCPKAKDVCFK-IRPTL 302
T+ L++ +P +G ++ EG + + GCR++PRC A + C +P L
Sbjct: 179 TRALMDCLPG-------RGGSMDRIEGSLPDVTDPPAGCRFSPRCEHATEACRSGDQPPL 231
Query: 303 IEVE--KNHWVACHLYQSSRE 321
V+ H +C Y + +
Sbjct: 232 WGVDDGDTHEASCVYYDAEHD 252
>emb|CAB65650.1| (AJ252160) putative ABC-transporter ATP-binding protein
[Alicyclobacillus acidocaldarius]
Length = 393
Score = 127 bits (317), Expect = 1e-28
Identities = 78/243 (32%), Positives = 129/243 (52%), Gaps = 18/243 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +E + KI+ G R+V GVSF I EGE+V L+G SGSGKTTI +LI L
Sbjct: 1 MTIEFVGVEKIYPGG------ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 54
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PT G + GK + ++ R V VFQ+ +A F + D V + + P
Sbjct: 55 PTKGDVWIGGKRVTDLPPQK------RNVGLVFQN-YALFQHMTVYDNVSFGLREKRVP- 106
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
++E + + + L + L ++PH+LSGGQ QR+ +ARAL +P++L+ DE +
Sbjct: 107 --KDEMDARVRELLRFMRLE--SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 162
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
+D R ++ + + D+ G + +F+THD ++D ++++ G + + G E+V+
Sbjct: 163 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY 222
Query: 241 HNP 243
P
Sbjct: 223 EKP 225
>pir||H83609 sulfate transport protein CysA PA0280 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946123|gb|AAG03669.1|AE004466_3 (AE004466) sulfate
transport protein CysA [Pseudomonas aeruginosa]
Length = 329
Score = 127 bits (317), Expect = 1e-28
Identities = 80/246 (32%), Positives = 132/246 (53%), Gaps = 21/246 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +E++N++K F + +A+D ++ I GE+V+L+G SG GKTT+ ++I L T
Sbjct: 1 MSIEIRNVSKNFNA-------FKALDDINLDIQSGELVALLGPSGCGKTTLLRIIAGLET 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P +G I+F G+D+ + ++ R V VFQ +A F + D V F
Sbjct: 54 PDAGNIVFHGEDVSQHDVRD------RNVGFVFQH-YALFRHMTVFDNV---AFGLRMKP 103
Query: 121 LGREEREEMIDKALEEVGLNPSEV---RGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
G E I + E+ LN ++ +YP QLSGGQ QRI +ARAL ++P++L+ DE
Sbjct: 104 KGERPGESAIKAKVHEL-LNMVQLDWLADRYPEQLSGGQRQRIALARALAVEPKILLLDE 162
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
LDA R ++ L ++ + +F+THD ++D ++M +G I ++G
Sbjct: 163 PFGALDAKVRKELRRWLARLHEEINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQIGSPG 222
Query: 238 KVFHNP 243
+V+ NP
Sbjct: 223 EVYENP 228
>emb|CAA68077.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 842
Score = 126 bits (314), Expect = 3e-28
Identities = 63/140 (45%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Query: 129 MIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRI 188
+I KALE+VGL + +YPH+ SGGQLQRI+IARAL+++P++++ADE ++ LD S +
Sbjct: 654 IIYKALEDVGLL-KQFAYRYPHEFSGGQLQRIVIARALIVEPQVIVADEPIASLDISIQA 712
Query: 189 DVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYT 248
V+NLL E K ++FI HDL++ Y++D IM+ G IVE G+TE ++ NP+HPYT
Sbjct: 713 QVVNLLKELCIKKNIGLIFIAHDLSMIEYVADEVQIMHLGKIVESGKTEAIYANPIHPYT 772
Query: 249 KMLLESVPDL-NVKWEFKGI 267
L +++P + N +F+ +
Sbjct: 773 INLFKAIPKISNANEKFQNV 792
Score = 85.0 bits (207), Expect = 1e-15
Identities = 49/103 (47%), Positives = 65/103 (62%), Gaps = 6/103 (5%)
Query: 1 MLLEVQNLTKIFTS-GLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
++L + NL K F + G+I +AVDGVSF ++EGEIV L+GESGSGKTT+G ILRL
Sbjct: 11 VILSIDNLKKYFVNQGMIN----KAVDGVSFDVHEGEIVGLIGESGSGKTTVGSTILRLY 66
Query: 60 TPTSGRILFEGKDIM-KFSKKELKTYYYRKVQAVFQDPFASFN 101
+G + E K I K + L + + VQ +FQDP AS N
Sbjct: 67 DDYNGFVRLEDKIISGKRISESLNRFLRKNVQMIFQDPHASLN 109
>sp|P38045|NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN NRTC >gi|419629|pir||S30893
nrtC protein - Synechococcus sp. (strain PCC 7942)
>gi|48971|emb|CAA43811.1| (X61625) nitrate transporter
[Synechococcus sp.] >gi|445047|prf||1908370B nitrate
transporter [Synechococcus sp.]
Length = 659
Score = 125 bits (312), Expect = 5e-28
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 15/239 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+ L V ++ ++F L GG Q A+ VS I GE +SL+G SG GK+T+ LI L
Sbjct: 3 VFLAVDHVHQVFD--LPGGGQYIALKDVSLNIRPGEFISLIGHSGCGKSTLLNLIAGLAQ 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P+SG I+ EG+ + + + VFQ+ S P V + + DS D
Sbjct: 61 PSSGGIILEGRQVTEPGPDRM---------VVFQN--YSLLPWRTVRQNIALAVDSVLHD 109
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
R ER +I++ ++ VGL + KYPH++SGG QR+ IAR L ++P+LL+ DE
Sbjct: 110 RNRTERRTIIEETIDLVGLRAAA--DKYPHEISGGMKQRVAIARGLAIRPKLLLLDEPFG 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LDA TR ++ L + G + + +THD+ +SD +++ G ++G+ +V
Sbjct: 168 ALDALTRGNLQEQLMRICQEAGVTAVMVTHDVDEALLLSDRVVMLTNGPAAQIGQILEV 226
>pir||F81875 sulfate ABC transporter, ATP-binding protein NMA1097 [similarity] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379792|emb|CAB84360.1| (AL162755) putative sulphate
permease ATP-binding protein [Neisseria meningitidis
Z2491]
Length = 357
Score = 125 bits (310), Expect = 9e-28
Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 17/253 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + +QNL K F + A+ ++ + G++VSL+G SG GKTT+ ++I L
Sbjct: 1 MSITIQNLNKHFGN-------FHALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGLEN 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G+ILF+G+D+ +E RKV VFQ +A F ++ D V + + P
Sbjct: 54 ADGGKILFDGQDVTAKHVRE------RKVGFVFQH-YALFRHMNVFDNVAFGL--TVLPK 104
Query: 121 LGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
R + ++ K E + L S + YPHQLSGGQ QRI +ARAL ++P+LL+ DE
Sbjct: 105 SERPSKGQIRAKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LDA R ++ L + G + + +THD +SD ++M G I + G E +
Sbjct: 165 GALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQTGSAEAI 224
Query: 240 FHNPLHPYTKMLL 252
+ P + + L
Sbjct: 225 YRKPENAFVTEFL 237
>gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 138
Score = 124 bits (308), Expect = 2e-27
Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
M+DAS R+ ++NL + RD+ G SV++ITHDLA YY+SD IM+RG IVEMG E+V
Sbjct: 1 MVDASLRMSIVNLFAQLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGDIVEMGSVERVL 60
Query: 241 HNPLHPYTKMLLESV--PDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKI 298
+P HPYT++L ES+ PD KW+ + I E + + KGC++A RCP+ +C +
Sbjct: 61 TDPKHPYTRLLRESIPEPDPEKKWK-EEITIADTEYEEYLRKGCKFAGRCPEVMSICREE 119
Query: 299 RPTLIEVEKNHWVACHLYQ 317
+P I V + V CHLY+
Sbjct: 120 KPPEIMV-GDSMVRCHLYK 137
>pir||B81147 sulfate ABC transporter, ATP-binding protein NMB0879 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226117|gb|AAF41290.1| (AE002440) sulfate ABC
transporter, ATP-binding protein [Neisseria meningitidis
MC58]
Length = 357
Score = 124 bits (308), Expect = 2e-27
Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 17/253 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + +QNL K F + A+ ++ + G++VSL+G SG GKTT+ ++I L
Sbjct: 1 MSITIQNLNKHFGN-------FHALKNINLNVPTGKLVSLLGPSGCGKTTLLRIIAGLEN 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G ILF+G+D+ +E RKV VFQ +A F ++ D V + + P
Sbjct: 54 ADGGNILFDGQDVTAKHVRE------RKVGFVFQH-YALFRHMNVFDNVAFGL--TVLPK 104
Query: 121 LGREEREEMIDKALEEVGL-NPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
R + ++ K E + L S + YPHQLSGGQ QRI +ARAL ++P+LL+ DE
Sbjct: 105 SERPSKGQIRAKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LDA R ++ L + G + + +THD +SD ++M G I + G E +
Sbjct: 165 GALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQTGSAEAI 224
Query: 240 FHNPLHPYTKMLL 252
+ P + + L
Sbjct: 225 YRKPENAFVTEFL 237
>sp|P75957|YCFV_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YCFV
Length = 233
Score = 118 bits (294), Expect = 7e-26
Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 13/221 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LL+ NL K + G + Q + VSF++ EGE++++VG SGSGK+T+ L+ L T
Sbjct: 4 ILLQCDNLCKRYQEGSV---QTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG ++F G+ + K S +K+ ++Q H + F + + P
Sbjct: 61 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ--------FHHLLPDFTALENVAMPL 112
Query: 121 L-GREEREEMIDKALEEVGLNPSEVRGKY-PHQLSGGQLQRILIARALLLKPRLLIADEA 178
L G+++ E+ +ALE + + R + P +LSGG+ QR+ IARAL+ PRL++ADE
Sbjct: 113 LIGKKKPAEINSRALEMLKAVGLDHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYIS 219
LDA + LLGE GT+ L +THDL L +S
Sbjct: 173 TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS 213
>dbj|BAA35937.1| (D90747) Heterocyst maturation protein (devA) homolog [Escherichia
coli]
Length = 263
Score = 118 bits (294), Expect = 7e-26
Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 13/221 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LL+ NL K + G + Q + VSF++ EGE++++VG SGSGK+T+ L+ L T
Sbjct: 34 ILLQCDNLCKRYQEGSV---QTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT 90
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG ++F G+ + K S +K+ ++Q H + F + + P
Sbjct: 91 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ--------FHHLLPDFTALENVAMPL 142
Query: 121 L-GREEREEMIDKALEEVGLNPSEVRGKY-PHQLSGGQLQRILIARALLLKPRLLIADEA 178
L G+++ E+ +ALE + + R + P +LSGG+ QR+ IARAL+ PRL++ADE
Sbjct: 143 LIGKKKPAEINSRALEMLKAVGLDHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 202
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYIS 219
LDA + LLGE GT+ L +THDL L +S
Sbjct: 203 TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS 243
>dbj|BAB06849.1| (AP001517) sulfate ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 357
Score = 117 bits (291), Expect = 1e-25
Identities = 80/256 (31%), Positives = 136/256 (52%), Gaps = 17/256 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + +QN++K F G +Q A+ ++ +I GE+V+L+G SGSGKT++ ++I L
Sbjct: 1 MSIVIQNVSKSF-----GSFQ--ALADINLSIETGELVALLGPSGSGKTSLLRIIAGLEA 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G I F + + R+V VFQ +A F + D + + + P
Sbjct: 54 ADQGDIYFHKDKVTQTHAAS------RQVGFVFQH-YALFPHMTVADNISYGL--RVKPR 104
Query: 121 LGREEREEMIDKALEEVGLNPSE-VRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
R ++E+ +K E + L E + +YP QLSGGQ QRI +ARAL ++P++L+ DE
Sbjct: 105 KERPSKKEIAEKVRELLALVKLEGMDDRYPAQLSGGQRQRIALARALAVEPKVLLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LDA R D+ L + +++ + +F+THD +SD ++M +G I ++G ++V
Sbjct: 165 GALDAKVRKDLRKWLRKLHNEFQVTSVFVTHDQEEALDVSDRVVVMNQGKIEQVGSPDEV 224
Query: 240 FHNPLHPYTKMLLESV 255
+ P P+ L +V
Sbjct: 225 YEQPKSPFVYDFLGNV 240
>sp|P16676|CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN CYSA >gi|7428825|pir||QRECSA
sulfate transport ATP-binding protein cysA - Escherichia
coli >gi|1788761|gb|AAC75475.1| (AE000329) ATP-binding
component of sulfate permease A protein; chromate
resistance [Escherichia coli K12]
>gi|1799841|dbj|BAA16296.1| (D90871) sulfate/thiosulfate
transport protein cysA [Escherichia coli]
>gi|1799851|dbj|BAA16305.1| (D90872) sulfate/thiosulfate
transport protein cysA [Escherichia coli]
Length = 365
Score = 117 bits (290), Expect = 2e-25
Identities = 82/265 (30%), Positives = 139/265 (51%), Gaps = 30/265 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +E+ N+ K F + + ++ +S I G++V+L+G SGSGKTT+ ++I L
Sbjct: 1 MSIEIANIKKSFG-------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
TSG I F G D+ + ++ RKV VFQ +A F + D + +
Sbjct: 54 QTSGHIRFHGTDVSRLHARD------RKVGFVFQH-YALFRHMTVFDNIAFGL-----TV 101
Query: 121 LGREER------EEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLI 174
L R ER + + K LE V L + + +YP QLSGGQ QR+ +ARAL ++P++L+
Sbjct: 102 LPRRERPNAAAIKAKVTKLLEMVQL--AHLADRYPAQLSGGQKQRVALARALAVEPQILL 159
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
DE LDA R ++ L + ++ + +F+THD ++D ++M +G I +
Sbjct: 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQAD 219
Query: 235 ETEKVFHNPLHPYTKMLLESVPDLN 259
++V+ P T+ +LE + ++N
Sbjct: 220 APDQVWREPA---TRFVLEFMGEVN 241
>pir||G83607 polyamine transport protein PotG PA0302 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946147|gb|AAG03691.1|AE004468_3 (AE004468)
polyamine transport protein PotG [Pseudomonas
aeruginosa]
Length = 384
Score = 116 bits (289), Expect = 3e-25
Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 22/260 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L+++ +TK F L AVD VS TIN+GEI +L+G SGSGK+T+ +++
Sbjct: 21 VLVKIDRVTKQFDETL-------AVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFER 73
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PT GRI +G+DI Y R + +FQ +A F + + + P
Sbjct: 74 PTEGRIFLDGQDITDLPP------YERPINMMFQS-YALFPHMSVAQNIAFGLKQDGLP- 125
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ E +E + + L+ V + ++ + PHQLSGGQ QR+ +AR+L +P+LL+ DE +
Sbjct: 126 --KAEIDERVAEMLKLVHM--TQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 181
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD R + L E ++ G + + +THD ++ IM+ G I ++G ++
Sbjct: 182 ALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIY 241
Query: 241 HNPLHPYTKMLLESVPDLNV 260
P ++++ E + ++N+
Sbjct: 242 ETPA---SRLVCEFIGNVNL 258
>gi|7524830 sulfate transport system permease protein [Chlorella vulgaris]
>gi|3023607|sp|P56344|CYSA_CHLVU PROBABLE SULFATE
TRANSPORT ATP-BINDING PROTEIN CYSA
>gi|7442559|pir||T07260 sulfate transport ATP-binding
protein - Chlorella vulgaris chloroplast
>gi|2224423|dbj|BAA57907.1| (AB001684) sulfate transport
system permease protein [Chlorella vulgaris]
Length = 236
Score = 116 bits (288), Expect = 3e-25
Identities = 75/252 (29%), Positives = 135/252 (52%), Gaps = 19/252 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + ++N++K F G +Q A+D V+ I G +V L+G SGSGK+T+ +++ L
Sbjct: 1 MSILIENISKRF-----GSFQ--ALDRVNLEIKNGSLVGLLGPSGSGKSTLLRVLAGLEK 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P SGRI EG+D + ++ R++ VFQ+ +A F L + V +
Sbjct: 54 PDSGRIWLEGQDATQMKLQD------REIGFVFQN-YALFPHLTVSENVAFGLEIQKIDS 106
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
L +++R + K ++ S YP+QLSGGQ QR+ +ARAL ++P++L+ DE +
Sbjct: 107 LLKKKRVNELLKLMQLEKFGDS-----YPNQLSGGQRQRVALARALAMEPKVLLLDEPFA 161
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LDA R + + L E K + +F+THD + ++ +++ G I+++G +++
Sbjct: 162 ALDAKIRKQLRSWLRELHHKISVTTVFVTHDYSEAMELAQEIVLLENGKIIQIGSAQELS 221
Query: 241 HNPLHPYTKMLL 252
+P + + L
Sbjct: 222 DHPTNTFVTNFL 233
>gi|11466425 probable transport protein [Mesostigma viride]
>gi|7259568|gb|AAF43869.1|AF166114_81 (AF166114)
probable transport protein [Mesostigma viride]
Length = 348
Score = 116 bits (287), Expect = 4e-25
Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 19/252 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + + N++K F G +Q A++ ++ I G I++L+G SGSGK+T+ ++I L T
Sbjct: 1 MSILIDNISKKF-----GNFQ--ALNHINLEIKSGSIIALLGPSGSGKSTLLRIIAGLDT 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P G I GK+ +S + R + VFQ+ +A F + D + F
Sbjct: 54 PDEGTIWISGKNASGYSIQS------RNIGFVFQN-YALFKNMTVYDNI---AFGLELRR 103
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ + ++K LE V L + +YP QLSGGQ QRI +ARAL ++P++L+ DE
Sbjct: 104 ISFNDISRKVNKLLELVQLQ--NLGHRYPAQLSGGQRQRIALARALAIEPKVLLLDEPFG 161
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LDA R ++ L + +K+ + + +THD I+D ++ G I ++G+ + ++
Sbjct: 162 ALDARVRKNLRAWLRDLHNKFSITTIIVTHDQQEAMEIADEIVVFNSGRIEQIGKPQDIY 221
Query: 241 HNPLHPYTKMLL 252
P P+ LL
Sbjct: 222 DQPATPFVFSLL 233
>gb|AAA23639.1| (M32101) cysA [Escherichia coli]
Length = 365
Score = 114 bits (282), Expect = 2e-24
Identities = 80/265 (30%), Positives = 138/265 (51%), Gaps = 30/265 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +E+ N+ K F + + ++ +S I G++V+L+G SGSGKTT+ ++I L
Sbjct: 1 MSIEIANIKKSFG-------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
TSG I F G D+ + ++ RKV VFQ +A F + D + +
Sbjct: 54 QTSGHIRFHGTDVSRLHARD------RKVGFVFQH-YALFRHMTVFDNIAFGL-----TV 101
Query: 121 LGREER------EEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLI 174
L R ER + + K LE V L + + +YP +SGGQ QR+ +ARAL ++P++L+
Sbjct: 102 LPRRERPNAAAIKAKVTKLLEMVQL--AHLADRYPAHVSGGQKQRVALARALAVEPQILL 159
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
DE LDA R ++ L + ++ + +F+THD ++D ++M +G I +
Sbjct: 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQAD 219
Query: 235 ETEKVFHNPLHPYTKMLLESVPDLN 259
++V+ P T+ +LE + ++N
Sbjct: 220 APDQVWREPA---TRFVLEFMGEVN 241
>pir||H82694 sulfate ABC transporter ATP-binding protein XF1347 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106344|gb|AAF84156.1|AE003966_17 (AE003966) sulfate
ABC transporter ATP-binding protein [Xylella fastidiosa]
Length = 348
Score = 114 bits (282), Expect = 2e-24
Identities = 81/256 (31%), Positives = 129/256 (49%), Gaps = 17/256 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + +Q L K F A+ G+ I +GE+++L+G SGSGKTT+ ++I L
Sbjct: 1 MGIRIQELCKQFED-------FTALAGIDLDIRQGELLALLGPSGSGKTTLLRIIAGLEH 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKV-FHMIFDSYFP 119
+GR+LF +D S + R+V VFQ +A F + + V F +
Sbjct: 54 ADAGRVLFGDEDATMMSVQA------RRVGFVFQH-YALFKHMSVYENVAFGLRVRRGKA 106
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
+ + + L V L+ E R YP QLSGGQ QR+ +ARAL ++PR+L+ DE
Sbjct: 107 RWPESQISARVFELLSLVQLDGLEQR--YPMQLSGGQRQRVALARALAIEPRVLLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LDA R D+ L E D+ G + +F+THD ++D I+ +G I ++ +V
Sbjct: 165 GALDAQVRRDLRRWLREIHDRTGLTTVFVTHDQEEALELADRVAILNQGRIEQVASPAEV 224
Query: 240 FHNPLHPYTKMLLESV 255
++ P P+ + +V
Sbjct: 225 YNRPSSPFVYSFVGAV 240
>dbj|BAA05388.1| (D26358) CmpC [Synechococcus sp.]
Length = 663
Score = 113 bits (281), Expect = 2e-24
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 15/234 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+ + V+N+ K F L GG + A+ G+ I +GE +SL+G SG GK+T+ LI L
Sbjct: 3 LFVAVENIEKSFP--LSGGNEYLALKGIDLEIKQGEFISLIGHSGCGKSTLLNLIAGLEL 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PT G + EG+ I + VFQ+ S P V + + D D
Sbjct: 61 PTDGAVSLEGQQITAPGPDRM---------VVFQN--YSLFPWLTVRENIALAVDEVLRD 109
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
L +EER+ ++++ ++ VGL K P QLSGG QR+ IAR L +P+LL+ DE
Sbjct: 110 LPKEERQAIVEEHIQLVGLG--HAADKPPAQLSGGMKQRVAIARGLATRPKLLLLDEPFG 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
LDA TR ++ L + ++ + + +THD+ +SD +++ G ++G
Sbjct: 168 ALDALTRGNLQEKLMQICEENHVTAVMVTHDVDEAVLLSDRIVMLTNGPGSKIG 221
>dbj|BAB04472.1| (AP001509) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 260
Score = 113 bits (279), Expect = 4e-24
Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 13/263 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
MLL+ +N++KI+TSG GG +A+D + + GE V ++G SGSGK+T+ ++ +
Sbjct: 1 MLLQAENVSKIYTSGK-GGASHQALDQFNLHVKRGEFVGIMGPSGSGKSTLLHILAMIDK 59
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P++G + +G ++ S+KE+ + +++ +FQD FN L ++ +++
Sbjct: 60 PSAGTVKIDGVNMKALSRKEVALFRRKRLGFIFQD----FNLLDTLNVKENILLPLVLES 115
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ + E E + + +G+ ++ K +++SGGQ QR ARAL+ P L++ADE
Sbjct: 116 VDKAEMERRLQELTGILGI--QDILLKRTYEISGGQQQRTAAARALIHNPELILADEPTG 173
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG----TIVEMGET 236
LD+ + ++ L + S+L +THD Y S I+ R T + GE
Sbjct: 174 NLDSKSATSLMTALEALNREQERSILMVTHDPFAASYC--SRIVFIRDGKPYTEIYRGEK 231
Query: 237 EKVFHNPLHPYTKMLLESVPDLN 259
+ F + ML + DL+
Sbjct: 232 RQAFFQKILDVLSMLGGAYDDLS 254
>dbj|BAB06418.1| (AP001516) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 251
Score = 112 bits (277), Expect = 7e-24
Identities = 70/229 (30%), Positives = 122/229 (52%), Gaps = 14/229 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++LE +L K++ G G +D VS + +G+ ++++G SGSGKTT+ L+ +
Sbjct: 2 IILEANHLHKVYGEG--GTRTTVGLDQVSLRVKKGDFLAIMGPSGSGKTTLLNLLSGIDA 59
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG I+ G DI K +L + +++ VFQ+ FN L + +++
Sbjct: 60 PTSGTIVINGDDISKMDGNQLALFRRKELGFVFQE----FNLLDSLTVKENIMVPMILEK 115
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ EE + + G++ + KYP+ LSGGQ QR+ ++RAL+ +P +L ADE
Sbjct: 116 KSAKHMEEKAKEVMSIFGIDG--LANKYPYHLSGGQQQRVAVSRALVNEPSILFADEPTG 173
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDL-ALGY-----YISDSTI 223
LD+ + ++ + + Y T++L +THD+ A Y +I+D TI
Sbjct: 174 NLDSKSSKVIMECFEQIVNHYQTTILLVTHDVFAANYCHHVMFINDGTI 222
>pir||C82310 sulfate ABC transporter, ATP-binding protein VC0541 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654969|gb|AAF93709.1| (AE004140) sulfate ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 376
Score = 109 bits (271), Expect = 3e-23
Identities = 79/264 (29%), Positives = 130/264 (48%), Gaps = 17/264 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + + N++K F Q +A+ +S I +GE++ L+G SGSGKTT+ ++I L
Sbjct: 1 MSIRLDNISKHFG-------QFQALAPLSLKIEDGEMIGLLGPSGSGKTTLLRIIAGLEG 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKV-FHMIFDSYFP 119
SG I F +D+ ++ R+V VFQ+ +A F + D V F +
Sbjct: 54 ADSGTIHFRNRDVTNVHVRD------RRVGFVFQN-YALFRHMTVADNVAFGLQVMERAQ 106
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
E ++ + + LE V L + +YP QLSGGQ QRI +ARAL +P +L+ DE
Sbjct: 107 RPNPAEIQKRVKQLLEIVQLG--HLAHRYPEQLSGGQKQRIALARALATQPEVLLLDEPF 164
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LDA R ++ L D+ G + +F+THD +SD ++M G I ++ ++
Sbjct: 165 GALDAKVRKELRRWLRSLHDELGFTSVFVTHDQDEALELSDRVVVMSNGRIEQIDSPVEL 224
Query: 240 FHNPLHPYTKMLLESVPDLNVKWE 263
+ P + +V +W+
Sbjct: 225 YAQPNSRFVFDFFGNVNQFAGEWQ 248
>dbj|BAB03992.1| (AP001507) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 253
Score = 109 bits (270), Expect = 4e-23
Identities = 71/247 (28%), Positives = 128/247 (51%), Gaps = 14/247 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L VQ L K + +G +A+ G+ F + E VS++G SGSGKTT I +
Sbjct: 4 IILNVQQLHKDY----VGEVNYKALKGIDFQLKRNEFVSVMGPSGSGKTTFLNCISTIDR 59
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PT+G I K+ + + ++L + ++ VFQD FN +H + +++
Sbjct: 60 PTNGSITINQKNPYELNDEDLAKFRRSELGFVFQD----FNLVHTLTVEENILLPLTLDA 115
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ +E + + +E +G+ E+ K ++SGGQ QR+ IARA++ +P LL+ADE
Sbjct: 116 VNAKEMTSRLAEVVEFLGIE--EIMKKRTFEISGGQKQRVAIARAVIHQPSLLLADEPTG 173
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTI---VEMGETE 237
LD+ V+ L + + TS+L +THD + + ++ I M G + ++ G+ +
Sbjct: 174 NLDSKAANSVMTLFQSIHETFQTSLLMVTHDPYVASF-AERVIFMQDGMLYNEIQRGDHK 232
Query: 238 KVFHNPL 244
K F+ +
Sbjct: 233 KQFYQEI 239
>sp|P57383|LOLD_BUCAI LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|10038971|dbj|BAB13006.1| (AP001118) hypothetical ABC
transporter ATP-binding protein ycfv [Buchnera sp. APS]
Length = 228
Score = 108 bits (268), Expect = 7e-23
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 17/218 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++++ NL K + G + + +SF +N+G+I ++G+SGSGKTT L+ L
Sbjct: 4 IIIKCINLNKSYKDG---DFTYTILKNISFQLNKGDIAGIIGKSGSGKTTFLHLLAGLEN 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG ILF G+ S ++ + ++ ++Q H + F+++ + P
Sbjct: 61 PTSGDILFNGRLFSSMSSNKMSKFRNIELGFIYQ--------FHHLMLDFNILENVSMPL 112
Query: 121 L----GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
L +++ EE+ L++ L + KYP +LSGG+ QR+ +ARA + KP L+IAD
Sbjct: 113 LISNKSKKDSEEIAYNMLKKFNLE--DKIKKYPSELSGGERQRVAVARAFINKPSLIIAD 170
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLAL 214
E LD + NL+ E Y TS + THD L
Sbjct: 171 EPTGNLDEDNTNIIFNLITELNSDYNTSFIIATHDPTL 208
>sp|Q44613|LOLD_BUCAP LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|2120388|pir||I40068 probable ABC-type transport
protein - Buchnera aphidicola >gi|862629|gb|AAC05797.1|
(U11045) OrfC [Buchnera aphidicola]
>gi|1094932|prf||2107191B ORF C [Buchnera aphidicola]
Length = 229
Score = 106 bits (263), Expect = 3e-22
Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 25/220 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+ NLTK F ++R ++ +S I +G+I + G+SGSGK+T+ L+ L
Sbjct: 5 IILQCINLTKSFYRKK---EEIRTLNKISLKIRKGDITFITGKSGSGKSTLLHLLGGLDK 61
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG ILF+G + S E+ K+ +FQ H + F+++ + P
Sbjct: 62 PTSGSILFDGVSLHSMSSNEIAKLRNLKLGFIFQ--------FHHLLLDFNVLENIAIPS 113
Query: 121 L--------GREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
L +E+ E++ K E +N KYP +LSGG+ QR+ IARAL+ +P L
Sbjct: 114 LISKKSIQESKEKSYEILKKVHLEKKIN------KYPSELSGGERQRVAIARALVNQPSL 167
Query: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDL 212
+IADE S LD + + +L+ E TS L ++HDL
Sbjct: 168 VIADEPTSHLDKNNAKIIFDLIFELNSNLNTSFLIVSHDL 207
>pir||A72401 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980721|gb|AAD35314.1|AE001707_1 (AE001707)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 266
Score = 106 bits (262), Expect = 4e-22
Identities = 71/240 (29%), Positives = 131/240 (54%), Gaps = 22/240 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +EV N++ IF G + +A++ VS INEGE + + G +GSGK+T+ +++ L+
Sbjct: 1 MRIEVVNVSHIFHRGT--PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG +L++G+ + + R + FQ P F D+V + +++PD
Sbjct: 59 PTSGDVLYDGERKKGYEIR-------RNIGIAFQYPEDQFFAERVFDEVAFAV-KNFYPD 110
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ ++ KA+E VGL+ + + P LSGG+ +R+ IA ++ +P +LI DE +
Sbjct: 111 ---RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD + D+L ++ +++ G +V+ I+HD+ T+I + +V + + +KVF
Sbjct: 168 GLDREGKTDLLRIVEKWK-TLGKTVILISHDI--------ETVINHVDRVVVLEKGKKVF 218
>pir||S75959 nitrate transport protein C-1 - Synechocystis sp. (strain PCC 6803)
>gi|1001319|dbj|BAA10806.1| (D64006) nitrate transport
protein NrtC [Synechocystis sp.]
Length = 667
Score = 105 bits (260), Expect = 6e-22
Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 15/228 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+ + V N+ K+F+ L G + A+ G++ I +GE VSL+G SG GK+T+ +I L
Sbjct: 3 LFVAVDNIDKVFS--LTDGGEYIALKGINLEIKKGEFVSLIGHSGCGKSTLLNMIAGLDL 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P+ G + EG+ I + ++ +FQ+ S P V + + D
Sbjct: 61 PSEGIVTLEGQRIKQPGPDKM---------VIFQN--YSLLPWLTVKQNIALAVDEVMKG 109
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
ER+ ++++ + VGL + K P +LSGG QR+ IARAL ++P+LL+ DE
Sbjct: 110 ASAAERKAIVEEHINLVGLGHAV--DKRPGELSGGMKQRVAIARALAIRPKLLLLDEPFG 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRG 228
LDA TR ++ L ++Y + + +THD+ +SD +++ G
Sbjct: 168 ALDALTRGNLQEQLMRICEQYQVTAVMVTHDVDEAVLLSDRIVMLTNG 215
>pir||A70001 ABC transporter (ATP-binding protein) homolog ytsC - Bacillus
subtilis >gi|2293177|gb|AAC00255.1| (AF008220)
transporter [Bacillus subtilis]
>gi|2635522|emb|CAB15016.1| (Z99119) similar to ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 253
Score = 105 bits (259), Expect = 8e-22
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 9/217 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++LE + K + + L + + G+ I +GE VS++G SGSGKTT+ ++ +
Sbjct: 2 VILEANKIRKSYGNKL---NKQEVLKGIDIHIEKGEFVSIMGASGSGKTTLLNVLSSIDQ 58
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
+ G I G D+ +K+L + + + +FQD +N L + +++
Sbjct: 59 VSHGTIHINGNDMTAMKEKQLAEFRKQHLGFIFQD----YNLLDTLTVKENILLPLSITK 114
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
L ++E ++ +E+G+ E+R KYP+++SGGQ QR RA + P ++ ADE
Sbjct: 115 LSKKEANRKFEEVAKELGIY--ELRDKYPNEISGGQKQRTSAGRAFIHDPSIIFADEPTG 172
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYY 217
LD+ + D+LN L + K +++ +THD Y
Sbjct: 173 ALDSKSASDLLNKLSQLNQKRNATIIMVTHDPVAASY 209
>pir||C64666 glutamine transport protein glnQ - Helicobacter pylori (strain
26695) >gi|2314330|gb|AAD08217.1| (AE000623) glutamine
ABC transporter, ATP-binding protein (glnQ)
[Helicobacter pylori 26695]
Length = 248
Score = 104 bits (258), Expect = 1e-21
Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 21/257 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++LE + L K + + L+ +DG++FT+N+GE+ ++G SG GK+T K + L
Sbjct: 3 VILETKGLKKTYQNHLV-------LDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEK 55
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G ILFE ++ +K +K+ VFQ+ + F L+ +D +
Sbjct: 56 INEGEILFENTNLN--NKATNWNQMRQKIGMVFQN-YELFPHLNVLDNILLAPMK----- 107
Query: 121 LGREEREEMIDKALE---EVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+ + ++E+I +A+E VGL + YP +LSGGQ QR+ I R+L ++P++++ DE
Sbjct: 108 VQKRSKDEVISQAIELLKRVGLEHKQQA--YPKELSGGQKQRVAIVRSLCMRPKIMLFDE 165
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
+ LD +VL ++ E G S++ +TH++ I+ + G I E +
Sbjct: 166 VTASLDPEMVKEVLEVILELATT-GMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAK 224
Query: 238 KVFHNPLHPYTKMLLES 254
+ F++P + LE+
Sbjct: 225 EFFNHPKSQRAQKFLET 241
>gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus solfataricus]
Length = 246
Score = 104 bits (257), Expect = 1e-21
Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 10/232 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L++ +L K++ + I + A+ GV+ +N+GE + + G SGSGKTT+ L+ L +
Sbjct: 18 ILIDAMDLKKVYKTKNI---EYVALRGVTLKVNKGEFLVIAGPSGSGKTTLLDLLGLLDS 74
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P++G+I+ +G D+ F + E + R + VFQ + L ++ V + P
Sbjct: 75 PSAGKIIIDGIDVTNFDEDERAIFRRRYIGFVFQS-YNLITYLTVLENVELALAAIGIPV 133
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
R E+ E I + + E++ K P++LSGGQ QR+ IARAL P++L+ADE +
Sbjct: 134 WKRREKAEEILSMIPGM----LELKNKKPNELSGGQQQRVAIARALANDPKILLADEPTA 189
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LD+ T ++ L+ + ++ +++ THD + Y I+ R +VE
Sbjct: 190 NLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMMRYA--DRIVYIRDGLVE 239
>emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Sulfolobus
solfataricus]
Length = 246
Score = 104 bits (257), Expect = 1e-21
Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 10/232 (4%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L++ +L K++ + I + A+ GV+ +N+GE + + G SGSGKTT+ L+ L +
Sbjct: 18 ILIDAMDLKKVYKTKNI---EYVALRGVTLKVNKGEFLVIAGPSGSGKTTLLDLLGLLDS 74
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P++G+I+ +G D+ F + E + R + VFQ + L ++ V + P
Sbjct: 75 PSAGKIIIDGIDVTNFDEDERAIFRRRYIGFVFQS-YNLITYLTVLENVELALAAIGIPV 133
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
R E+ E I + + E++ K P++LSGGQ QR+ IARAL P++L+ADE +
Sbjct: 134 WKRREKAEEILSMIPGM----LELKNKKPNELSGGQQQRVAIARALANDPKILLADEPTA 189
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LD+ T ++ L+ + ++ +++ THD + Y I+ R +VE
Sbjct: 190 NLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMMRYA--DRIVYIRDGLVE 239
>gb|AAD53162.1|AF176824_5 (AF176824) ATP-binding protein of ABC transporter SrpK
[Synechococcus PCC7942]
Length = 270
Score = 102 bits (253), Expect = 4e-21
Identities = 76/228 (33%), Positives = 117/228 (50%), Gaps = 17/228 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+ ++LTK + SG + V A ++ +++ GEIV L+G SG GK+++ + I L
Sbjct: 18 VILQARSLTKHYRSG---NHNVTAFKDLTLSLHPGEIVCLLGPSGCGKSSLLQAIASLEP 74
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQV-DKVFHMIFDSYFP 119
+G I F G+ + + + ++ VFQ+P + P V V + P
Sbjct: 75 IDAGEIQFLGQPLQQ---------PHPRIGFVFQEP--ALLPWQTVWQNVSFGLELKQGP 123
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
L +R I AL VGL +E YP QLSGG QR+ +ARAL P LL+ DE
Sbjct: 124 QLSEAQRRSRISDALNRVGLAGAE--RAYPRQLSGGMAQRVALARALARHPHLLLLDEPF 181
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYR 227
+ LDA R+++ LL E +VL +THDL + D I+M+R
Sbjct: 182 AALDAIHRLEMQKLLLEAIAGQTEAVLMVTHDLDEALLLGDRIILMHR 229
>gi|11467821 probable transport protein [Nephroselmis olivacea]
>gi|5880750|gb|AAD54843.1|AF137379_66 (AF137379)
probable transport protein [Nephroselmis olivacea]
Length = 343
Score = 102 bits (253), Expect = 4e-21
Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 21/248 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + ++N++K F + RA+D V+ + G +V+LVG SGSGK+T+ ++I L
Sbjct: 1 MSILIENISKTFGT-------FRALDHVNLEVKAGSLVALVGPSGSGKSTLLRMIAGLER 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKV-FHMIFDSYFP 119
G+I G+D ++ R + VFQ+ +A F L+ + F + P
Sbjct: 54 ADEGKIWLAGRDATYAPIQK------RHIGFVFQN-YALFKHLNVAKNISFGLEVRQANP 106
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
+ R +++ E + +YP QLSGGQ QR+ +ARAL ++P++L+ DE
Sbjct: 107 NQIRSRVRDLLQLIQLE------HMADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 160
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LDA R ++ + L + + + +F+THD ++ ++ +G + ++G +++
Sbjct: 161 GALDARVRRELRSWLRDLHQEMPVTTVFVTHDQQEAMEVAHEIVVFNQGRLEQVGSPQEI 220
Query: 240 FHNPLHPY 247
+ +P P+
Sbjct: 221 YDHPATPF 228
>pir||D81303 branched-chain amino-acid ABC transport system ATP-binding protein
Cj1015c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6968451|emb|CAB73271.1| (AL139077)
branched-chain amino-acid ABC transport system
ATP-binding protein [Campylobacter jejuni]
Length = 256
Score = 100 bits (247), Expect = 2e-20
Identities = 80/254 (31%), Positives = 135/254 (52%), Gaps = 26/254 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M+LE++ ++K F S V+A++ SF INEGEI +L+G +G+GKTT+ +I
Sbjct: 1 MILELKQISKSFGS-------VKAINETSFKINEGEIFALIGPNGAGKTTLFNIITGNYK 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDP--FASFNPLHQV-----DKVFHMI 113
P+SG + F G+ I ++ + + FQ+ F+S N L V ++ + I
Sbjct: 54 PSSGSVEFLGERIDHLKPHKI---VHLGIARTFQNIRLFSSMNVLENVLIGFNKQMKYNI 110
Query: 114 FDSYFPDLGREEREEMIDKA-----LEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLL 168
F+++ LGR + E + K LEE+G+ +E + LS GQ +++ IARA+
Sbjct: 111 FEAFL-HLGRFGKIEQVFKEKAYAILEELGI--AEFAYEKATSLSYGQQRKVEIARAMAT 167
Query: 169 KPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIM-YR 227
+PRLL+ DE + +++S ++ L+ + R Y SVL I HD+ + D +++ Y
Sbjct: 168 QPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLCDRVLVLDYG 227
Query: 228 GTIVEMGETEKVFH 241
TI E + V H
Sbjct: 228 KTIFEGKLCDAVNH 241
>pir||A64703 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
26695) >gi|2314642|gb|AAD08506.1| (AE000646) ABC
transporter, ATP-binding protein (HI1087) [Helicobacter
pylori 26695]
Length = 261
Score = 99.1 bits (243), Expect = 6e-20
Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 14/236 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L+EV++L F S +I GVSF++++GE+++++G SGSGK+T+ + ++ L
Sbjct: 8 VLIEVKDLHSAFGSTIIHR-------GVSFSVHKGEVMAILGGSGSGKSTLLRCMILLNR 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYR-KVQAVFQDPFASFNPLHQVDKVFHMIFDSYFP 119
PT G +L G+DI K + E + + R + F ++S L V + + +Y
Sbjct: 61 PTKGEVLLFGEDIWKLKEAEQQKIFNRCGICFQFGALYSSLTVLENVGVMLEQ-YGAY-- 117
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
++ EE+ +E+VGL P YP++LSGG +R+ IARA+ P +L DE
Sbjct: 118 --SKKIVEEISKMWIEKVGL-PPRAYHLYPYELSGGMKKRVGIARAMATNPEILFLDEPT 174
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
S LD + L+ ++ +V+ ITHDL + D I++ G + G+
Sbjct: 175 SGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDGLLEFNGD 230
>pir||H71817 probable amino acid ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155970|gb|AAD06934.1| (AE001558) putative amino
acid abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 261
Score = 99.1 bits (243), Expect = 6e-20
Identities = 72/236 (30%), Positives = 123/236 (51%), Gaps = 14/236 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L+EV++L F S +I GVSF++++GE+++++G SGSGK+T+ + ++ L
Sbjct: 8 VLIEVKDLHSAFGSTIIHR-------GVSFSVHKGEVMAILGGSGSGKSTLLRCMILLNR 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYR-KVQAVFQDPFASFNPLHQVDKVFHMIFDSYFP 119
PT G +L G+DI K + E + + R + F ++S L V + + +Y
Sbjct: 61 PTKGEVLLFGEDIWKLKEAEQQKIFNRCGICFQFGALYSSLTVLENVGVMLEQ-YGAY-- 117
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
++ EE+ +E VGL P YP++LSGG +R+ IARA+ P +L DE
Sbjct: 118 --SKKIVEEISKMWIERVGL-PPRAYHLYPYELSGGMTKRVGIARAMATNPEILFLDEPT 174
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
S LD + L+ ++ +V+ ITHDL + D I++ G + G+
Sbjct: 175 SGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDGLLEFNGD 230
>gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein of ABC transporter
[Acinetobacter sp. BD413]
Length = 228
Score = 98.3 bits (241), Expect = 1e-19
Identities = 70/234 (29%), Positives = 121/234 (50%), Gaps = 13/234 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++LE +++ K FT G V + G+S I GE VS+VG SGSGK+T+ ++ L
Sbjct: 4 IVLEAKDVYKHFTDGKS---TVEVIKGLSLKIAAGEFVSIVGASGSGKSTLLHILGGLDQ 60
Query: 61 PTSGRILFEGK--DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
PT G++ + D + +++ K Y F F+ L V + D+ +
Sbjct: 61 PTQGQVFLNEQRFDNLGEAERGFKRNQYLGFVYQFHHLLPEFSALENVAMPLMLRADTNY 120
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
++ +++ E ++D+ VGL S P +LSGG+ QR+ +ARAL+ +P +++ADE
Sbjct: 121 KEV-KQQAEHLLDR----VGL--SHRLTHKPGELSGGERQRVALARALVARPAVMLADEP 173
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LD T + LL + + ++ ++L +THD L +DS + M G V+
Sbjct: 174 TGNLDRKTAFGIFELLSDLKQEFNMAMLIVTHDEQLA-QSADSILHMQDGLWVD 226
>dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacillus halodurans]
Length = 247
Score = 97.1 bits (238), Expect = 2e-19
Identities = 73/236 (30%), Positives = 118/236 (49%), Gaps = 15/236 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M+L V+ L K++ G +G + ++ +I GE++S++G SG+GK+T + I RL+
Sbjct: 4 MILRVEGLKKVYPDGTVG------IKEINTSIRRGELISVIGPSGAGKSTFLRSINRLVE 57
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH---MIFDSY 117
PTSG I EG++I K+L+ RK+ VFQ + + V H +
Sbjct: 58 PTSGAIFVEGENICNARGKKLR-QMRRKIGMVFQH-YNLIKRSSVLQNVLHGRLGYMSTI 115
Query: 118 FPDLGR--EEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
LGR E + L+ VGL + K +LSGGQ QR+ IARA+ P L++A
Sbjct: 116 KGGLGRFHESDTKRALSILKRVGLEEQAL--KRADELSGGQQQRVGIARAIAQNPTLILA 173
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIV 231
DE ++ LD + +VL+ + + G + + H + +D I + G IV
Sbjct: 174 DEPIASLDPTASENVLHYMKTICQEEGITTVVNLHQVEFAKKFADRMIGIKAGKIV 229
>pir||D81435 probable iron-uptake ABC transport system ATP-binding protein
Cj0173c [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6967666|emb|CAB72656.1| (AL139074) putative
iron-uptake ABC transport system ATP-binding protein
[Campylobacter jejuni]
Length = 302
Score = 96.3 bits (236), Expect = 4e-19
Identities = 71/270 (26%), Positives = 138/270 (50%), Gaps = 37/270 (13%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M+LE++NL+K F +++A++ ++ + EGE +S++G SGSGK+T+ ++I +L
Sbjct: 1 MMLEIKNLSKNFG-------KIQALENINLHVKEGEFLSILGGSGSGKSTLLRIIAKL-E 52
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
S LF K +V +FQ+ +A F L+ + ++D
Sbjct: 53 QASSYDLFSCKG---------------EVALMFQN-YALFPHLNVEKNILFALYD----- 91
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
++++ ++++ L+ + ++R K ++SGGQ QR+ ARA+ +LL+ DE S
Sbjct: 92 --KKDKNQILNHLLKTFEIE--DLRYKKIDEISGGQAQRVAFARAMARGCKLLLLDEPFS 147
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LD + + D+ L + + G + + +THD+ Y +SD + +G I+ ++++
Sbjct: 148 NLDQNLKQDLRRELKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELY 207
Query: 241 HNPLHPYTKMLLESVPDLNVKWEFKGIEPE 270
P ++L PDLN+ E +E E
Sbjct: 208 FKPDFKSAQIL----PDLNIIEEKLDLEDE 233
>pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding protein VC1552
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9656059|gb|AAF94706.1| (AE004233)
glycerol-3-phosphate ABC transporter, ATP-binding
protein [Vibrio cholerae]
Length = 393
Score = 96.3 bits (236), Expect = 4e-19
Identities = 70/261 (26%), Positives = 133/261 (50%), Gaps = 23/261 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+++ L K + +G +AV GV +I++GE + LVG SG GK++I + I L +
Sbjct: 21 VMLDIKQLVKTYDNGH------QAVKGVDLSIHQGEFIVLVGPSGCGKSSILRSIAGLES 74
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
TSG I G+ + R + VFQ+ +A + + D + + + +
Sbjct: 75 ITSGEIHLAGRRVDNEKPAN------RDIAMVFQN-YALYPHMSVYDNLAYGLKN----- 122
Query: 121 LGREEREEMIDKALEEVG--LNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
R ++ I + +V L E + P +LSGGQ QR+ + RA++ P+L + DE
Sbjct: 123 --RGVDKQTIAAKIAKVAKTLKIEEYLDRKPAKLSGGQRQRVAMGRAIVRDPQLFLFDEP 180
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
+S LDA+ R + + + + + G + +++THD ++D +++ +G I ++G +
Sbjct: 181 LSNLDAALRAHMRLEIKKLQRELGVTSVYVTHDQVEAMTLADRIVVVKQGEIEQVGTPAE 240
Query: 239 VFHNPLHPYTKMLLESVPDLN 259
V+H P + + S P +N
Sbjct: 241 VYHQPASTFVASFIGS-PAMN 260
>pir||E82120 zinc ABC transporter, ATP-binding protein VC2082 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656630|gb|AAF95228.1| (AE004282) zinc ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 262
Score = 95.6 bits (234), Expect = 7e-19
Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 34/243 (13%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L+E+Q++ F Q R +D + T+ +G I +L+G +G+GK+T+ K+IL L +
Sbjct: 3 ILIELQDICVDFE-------QRRVLDNIRLTLTKGNITTLIGPNGAGKSTLVKVILGLQS 55
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
+SG+I+ + + + ++LK ++ + + +
Sbjct: 56 LSSGKIIRQSGIRIGYVPQKLK-----------------------LNDTLPLTVNRFLKL 92
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
GR +E+ +AL VG ++ H+LSGG+ QR+L+ARALL +P LL+ DE
Sbjct: 93 AGRFSTQEL-SEALRLVG--GEHLQSSDMHKLSGGETQRVLLARALLQRPDLLVLDEPAQ 149
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
+D +ID+ +L+ R+++G +VL ++HDL L +D I + G E +
Sbjct: 150 GVDVQGQIDLYDLIHTLRNRFGCAVLMVSHDLHLVMAKTDEVICLQHHVCCS-GSPESIA 208
Query: 241 HNP 243
+P
Sbjct: 209 KHP 211
>pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A2 -
Methanococcus jannaschii >gi|1592327|gb|AAB99247.1|
(U67565) methyl coenzyme M reductase system, component
A2 (atwA) [Methanococcus jannaschii]
Length = 539
Score = 93.6 bits (229), Expect = 3e-18
Identities = 68/248 (27%), Positives = 124/248 (49%), Gaps = 21/248 (8%)
Query: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
+++++N++K + S G ++AVD V+ I E EI LVG SG+GKTT+ K+I +L P
Sbjct: 287 IIKLENVSKHYCSVERG--VIKAVDNVTLNIREREIFGLVGTSGAGKTTLAKIIAGVLPP 344
Query: 62 TSGRILF----EGKDIMK---FSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIF 114
+ G+ F E D+ K + K Y + +FQ+ L+ + +
Sbjct: 345 SKGKYWFRVGDEWVDMTKPGPMGRGRAKRY----IGILFQE-----YALYPHRTILENLT 395
Query: 115 DSYFPDLGREEREEMIDKALEEVGLNPSE---VRGKYPHQLSGGQLQRILIARALLLKPR 171
++ +L E L VG + E + KYPH+LS G+ R +A+ L+ +PR
Sbjct: 396 EAIGLELPDEFARMKAVYTLVSVGFSEEEAEEILDKYPHELSVGERHRCALAQVLIKEPR 455
Query: 172 LLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIV 231
++I DE +D TR V + + R + + + ++HD+ + D +M G ++
Sbjct: 456 VVILDEPTGTMDPITRNTVAESIHKSRIELEQTYIIVSHDMDFVLNVCDRAGLMRNGKLI 515
Query: 232 EMGETEKV 239
++G+ E++
Sbjct: 516 KVGKPEEI 523
Score = 78.4 bits (190), Expect = 1e-13
Identities = 67/270 (24%), Positives = 127/270 (46%), Gaps = 44/270 (16%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL-- 58
MLLEV+N+TK F ++ + +SFT+ EGE + ++G+SG+GK+ + ++ +
Sbjct: 7 MLLEVKNVTKKFGDKVV-------LKNISFTLEEGESLGILGKSGAGKSVLLHMLRGMDG 59
Query: 59 LTPTSGRILFE-----------------------GKDIMK-----FSKKELKTYYYRKVQ 90
PT G+I++ G ++ K ++ K+ RK+
Sbjct: 60 YEPTEGQIIYHVSYCEKCGYVDVPSKAGTPCKKCGNELKKIEVDFWNDKKYTYNLKRKIA 119
Query: 91 AVFQDPFASFNPLHQVDKVFHMIFDSYFPDLGREEREEMIDKALEEVGLNPSEVRGKY-P 149
+ Q FA + ++ + + + + E +E ID AL+ + + E R +
Sbjct: 120 IMLQRTFALYGEKTVLENILEALHQAGY------EGKEAIDMALKLIKMVKLEHRITHIA 173
Query: 150 HQLSGGQLQRILIARALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFIT 209
LSGG+ QR+++AR + +P + +ADE LD T V + L E K S++ +
Sbjct: 174 RDLSGGEKQRVVLARQIAKEPFIFLADEPTGTLDPQTAKLVHSALKELVIKNKISLILTS 233
Query: 210 HDLALGYYISDSTIIMYRGTIVEMGETEKV 239
H + +++ I + +G I+ G +E+V
Sbjct: 234 HWPEVIAELTEKAIWLDKGEIIMEGTSEEV 263
>emb|CAB94640.1| (AL359215) putative iron transport protein, ATP-binding component.
[Streptomyces coelicolor A3(2)]
Length = 258
Score = 93.6 bits (229), Expect = 3e-18
Identities = 81/244 (33%), Positives = 119/244 (48%), Gaps = 27/244 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +EV LT + SG R +D VS + G V LVG +GSGK+T+ + + R L
Sbjct: 2 MRVEVDGLT-VEMSG------ARVLDDVSLHADSGGFVGLVGPNGSGKSTLLRCVYRALR 54
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PT+G + G ++ S +E R++ A+ Q+ A F+ V ++ P
Sbjct: 55 PTAGVVRLGGDELPSLSPRESA----RRLAALPQEAAAEFD-----FTVAEVVAMGRLPH 105
Query: 121 LGREEREEMIDK-----ALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
G R D+ ALE VG + RG LSGG+ QR+LIARAL +PR+L+
Sbjct: 106 QGAAARTSDEDRHACAAALEGVGADHLTGRGFLT--LSGGERQRVLIARALAQQPRILVL 163
Query: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
DE + LD + +++VL+L+ G +VL HDL L D ++ G IV G
Sbjct: 164 DEPTNHLDIAQQLEVLSLV----RASGPTVLAALHDLNLAALHCDRLHVVDGGRIVASGA 219
Query: 236 TEKV 239
V
Sbjct: 220 PHDV 223
>pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB) homolog -
Lyme disease spirochete >gi|2688112|gb|AAC66606.1|
(AE001132) phosphate ABC transporter, ATP-binding
protein (pstB) [Borrelia burgdorferi]
Length = 260
Score = 93.2 bits (228), Expect = 4e-18
Identities = 75/265 (28%), Positives = 135/265 (50%), Gaps = 40/265 (15%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+++E +NL +T +A++ ++ I + I +L+G SG GK+T + + R+
Sbjct: 12 VIIETENLNLFYTD-------FKALNKINMKILKNSITALIGPSGCGKSTFLRTLNRMND 64
Query: 61 -----PTSGRILFEGKDIMK--FSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMI 113
G +++EGK+I F EL+ RK+ VFQ P NP I
Sbjct: 65 LVEGIKIEGNVIYEGKNIYSNNFDILELR----RKIGMVFQTP----NPF------LMSI 110
Query: 114 FD--SYFPDL----GREEREEMIDKALEEVGLNPSEVRGKYPHQ---LSGGQLQRILIAR 164
+D SY P + +++ +E+++++L++ L +EV+ K LSGGQ QR+ IAR
Sbjct: 111 YDNISYGPKIHGTKDKKKLDEIVEQSLKKSALW-NEVKDKLHTNALSLSGGQQQRLCIAR 169
Query: 165 ALLLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTII 224
L ++P +++ DE S LD + + L+ ++ Y +++ +TH++ ISD T
Sbjct: 170 TLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAF 227
Query: 225 MYRGTIVEMGETEKVFHNPLHPYTK 249
G I E T+++F NP + T+
Sbjct: 228 FLNGCIEEESSTDELFFNPKNTKTE 252
>dbj|BAB04009.1| (AP001508) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 301
Score = 92.8 bits (227), Expect = 5e-18
Identities = 74/232 (31%), Positives = 116/232 (49%), Gaps = 24/232 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M LE++++TK + + AV S + GE V L+G +G+GKTT+ K+I +L
Sbjct: 1 MKLEIKSVTKKYK-------EKTAVHDFSMDLLSGECVGLIGPNGAGKTTLIKMITNILD 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PT G IL GK I + K+E+ Y + +Q AS ++F
Sbjct: 54 PTRGDILLNGKRISEM-KREIG--YLPQYPDFYQWMTASET----------LLFMGQLSG 100
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ +++ + I + L +VGL E SGG QR+ IA+ALL KP ++ DE VS
Sbjct: 101 ISKKKLTKSIPEILSKVGLRGEE--NSKVSTFSGGMKQRLGIAQALLHKPSFIVMDEPVS 158
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
LD R +VLN++ E K +++L TH LA I + +++ G +E
Sbjct: 159 ALDPIGRREVLNIIEEI--KKDSTILLSTHILADAEEICERLVMIKNGEKIE 208
>gi|11498428 branched-chain amino acid ABC transporter, ATP-binding protein
(braF-2) [Archaeoglobus fulgidus]
>gi|7445741|pir||F69352 branched-chain amino acid ABC
transporter, ATP-binding protein (braF-2) homolog -
Archaeoglobus fulgidus >gi|2649779|gb|AAB90413.1|
(AE001047) branched-chain amino acid ABC transporter,
ATP-binding protein (braF-2) [Archaeoglobus fulgidus]
Length = 238
Score = 92.1 bits (225), Expect = 8e-18
Identities = 76/247 (30%), Positives = 123/247 (49%), Gaps = 25/247 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
ML EV++L + G Y+V + GV+ ++ GEIVS++G +G+GK+T+ + I L+
Sbjct: 4 MLFEVKDLHVAY-----GSYEV--LRGVNLEVDRGEIVSIIGSNGAGKSTLFRTISGLIK 56
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF-- 118
P SGRI+FEG+DI S +E+ + + P F L V+ + Y+
Sbjct: 57 PRSGRIIFEGEDIAGKSPEEIVSI------GITHCPEGRF--LFPELSVYKNLLLGYYTK 108
Query: 119 --PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
G +ER E + + + ++ G +SGG+ Q + IARAL+ P+LL+ D
Sbjct: 109 RKDKKGFKERLEYVFEIFPVLKERINQRAG----TMSGGEQQMLAIARALMPSPKLLLLD 164
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E L V +L E K T++L + +L +SD T +M G I G+
Sbjct: 165 EPSLGLSPKLSWSVFEVLKEI--KKDTAILVSEQNASLCLKVSDRTYVMELGEIRLSGKA 222
Query: 237 EKVFHNP 243
++V NP
Sbjct: 223 DEVLANP 229
>sp|Q57243|YC72_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI1272
>gi|1074079|pir||F64113 ferric enterobactin transport
ATP-binding protein homolog HI1272 - Haemophilus
influenzae (strain Rd KW20) >gi|1574727|gb|AAC22920.1|
(U32807) ABC transporter, ATP-binding protein
[Haemophilus influenzae Rd]
Length = 263
Score = 92.1 bits (225), Expect = 8e-18
Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
MLLE QNL IG V + FT+ E +I L+G +G+GK+T K +L L
Sbjct: 10 MLLETQNLA-------IGYEGKTLVQHIQFTLEENQICCLLGANGAGKSTFLKTLLGLQP 62
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P G I+++GK + +S EL + QA + P D V M+ S F
Sbjct: 63 PIGGDIVWQGKSLSDYSPTELARHIAYVPQA-----HSHLFPFLVQDMV--MMGRSAFLK 115
Query: 121 LGREEREEMIDKALEEVG-LNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
+ ++ +D AL + L + + +Y HQLSGG+ Q +LIARA+ + +LLI DE
Sbjct: 116 WYQTPKKSDLDLALMALQELEIAHLAQRYYHQLSGGEKQLVLIARAIAQQAKLLIMDEPT 175
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIM 225
S LD +I VL + + + K +++ TH+ ++ D+ +++
Sbjct: 176 SSLDFGNQIRVLEKIKQLQ-KQNIALIISTHNPQQAAFLGDNIVLL 220
>gb|AAK41273.1| Sugar ABC transporter [Sulfolobus solfataricus]
Length = 324
Score = 91.3 bits (223), Expect = 1e-17
Identities = 65/255 (25%), Positives = 128/255 (49%), Gaps = 22/255 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +E+ ++ K + ++ ++G++ I GE ++G SG GK+T+ K++ +
Sbjct: 1 MTVELIDIVKKYGKNIV-------INGITEKIETGEFFVILGPSGEGKSTLLKILAGIEK 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G+I+ +G DI ++ R V VFQ+ +A + + D + F
Sbjct: 54 LDKGKIIADGADITDKPPEK------RNVAMVFQN-YALYPNMSVRDNI---AFPLKMRG 103
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ +EE E ++KA + +G+ SE+ K Q+SGGQ QR+ +ARA++ P + DE +S
Sbjct: 104 MKKEEIIERVEKAAKLLGI--SEILDKKVTQISGGQQQRVALARAIVRNPSYFLLDEPLS 161
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
LDA R L + + + +++THD ++D I+++G ++ + + ++
Sbjct: 162 NLDARVRTTARGELKRIQKELKGTFIYVTHDQKEALSLADRIAILHKGKFEQVSDPKTLY 221
Query: 241 HNPLHPYTKMLLESV 255
+P TK + + V
Sbjct: 222 E---YPKTKWVAQFV 233
>sp|P45092|ARTP_HAEIN ARGININE TRANSPORT ATP-BINDING PROTEIN ARTP >gi|1073857|pir||D64188
arginine transport protein artP - Haemophilus influenzae
(strain Rd KW20) >gi|972900|gb|AAA95977.1| (U17295)
ArtP [Haemophilus influenzae] >gi|1574105|gb|AAC22831.1|
(U32797) arginine ABC transporter, ATP-binding protein
(artP) [Haemophilus influenzae Rd]
Length = 243
Score = 89.3 bits (218), Expect = 5e-17
Identities = 65/245 (26%), Positives = 116/245 (46%), Gaps = 15/245 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + V+NL + S + + ++ EG+ V L+G SG+GK+T+ + + L
Sbjct: 1 MAIRVKNLNFFYGSS-------QTLFDINLEAEEGDTVVLLGPSGAGKSTLIRTLNLLEV 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDK--VFHMIFDSYF 118
P SG + + + + +Q + QD F H V + ++
Sbjct: 54 PKSGELSIANNEFNLSNAMANP----KAIQQLRQDVGMVFQQYHLWPHLTVIENLIEAPM 109
Query: 119 PDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
G E E D L ++ ++P LSGGQ QR+ IARAL++KP++L+ DE
Sbjct: 110 KVRGVSENEAKTDAMELLKRLRLEQLADRFPLHLSGGQQQRVAIARALMMKPQVLLFDEP 169
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
+ LD V++++ E ++ G + + +TH++ + ++ + M +G IVEMG +
Sbjct: 170 TAALDPEITAQVVDIIKELQET-GITQVIVTHEVNVAQKVATKVVYMEQGKIVEMGSAD- 227
Query: 239 VFHNP 243
F NP
Sbjct: 228 CFENP 232
>dbj|BAB04167.1| (AP001508) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 307
Score = 88.2 bits (215), Expect = 1e-16
Identities = 69/235 (29%), Positives = 113/235 (47%), Gaps = 21/235 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M++E + L KI+ V VD V + EGE+ +G +GSGKTT+ +++L L+
Sbjct: 1 MIIEAKGLKKIYN-------HVPVVDDVDLLVPEGEVFGFLGPNGSGKTTVMRMLLGLVK 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G I GK + K LK +V A+ + P A + L+ +D +
Sbjct: 54 TDGGDIKILGKSLEKNRLSILK-----EVGALIETP-AYYGHLNAIDNL------KIAAT 101
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
L + E I+K L+ VGL S + K S G QR+ IA ALL +P+LL+ DE +
Sbjct: 102 LRQIEDHSQIEKTLDRVGLTSS--KHKKVKSFSLGMKQRLGIAMALLHQPKLLLLDEPTN 159
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
LD ++ L+ + K G +V +H L ++ ++Y G+++ G+
Sbjct: 160 GLDPEGIQEMRELIRDLPKKEGVTVFVSSHLLGEIDQVASQVGVIYHGSLLYQGQ 214
>pir||A70158 ABC transporter, ATP-binding protein homolog - Lyme disease
spirochete >gi|2688376|gb|AAC66828.1| (AE001151) ABC
transporter, ATP-binding protein [Borrelia burgdorferi]
Length = 277
Score = 86.2 bits (210), Expect = 5e-16
Identities = 64/240 (26%), Positives = 121/240 (49%), Gaps = 18/240 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+ N+ K + L AV+G++ I +GE+V L+G +G+GKTT I+ +
Sbjct: 38 VVLKADNIIKKYGEKL-------AVNGITINIYKGEVVGLLGPNGAGKTTTFYTIVGFIK 90
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFAS-FNPLHQVDKVFHMIFDSYFP 119
P +G++L I ++ L Y ++ V+ AS F L + + M+
Sbjct: 91 PNAGKVL-----INDYNISSLNMYERARIGIVYLPQDASIFRELTVEENI--MVALERRE 143
Query: 120 DLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAV 179
DL + ER+ + L+E + ++ + + LSGG+ +R IARAL + P L+ DE
Sbjct: 144 DLSKAERKIELVNLLKEFEI--KRIQSQKAYTLSGGERRRAEIARALAVNPYFLLLDEPF 201
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
+ +D D+ N++ ++K VL H++ + I D I+Y+G +++ G+ + +
Sbjct: 202 AGIDPIAIGDIKNIIKILKEK-NIGVLITDHNVRDAFDIIDRAYIVYQGQVLDEGDVDYI 260
>gb|AAF43495.1|AF130119_2 (AF130119) oligopeptide permease F [Mycoplasma bovis]
Length = 514
Score = 85.0 bits (207), Expect = 1e-15
Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 4/102 (3%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++LE+Q+L K F L G +AVDGVSF ++EGEIV L+GESGSGKTT+G+ ILRL
Sbjct: 9 VILEIQDLKKYF---LNNGKVNKAVDGVSFKLHEGEIVGLIGESGSGKTTVGRSILRLYD 65
Query: 61 PTSGRILFEGKDIMKFS-KKELKTYYYRKVQAVFQDPFASFN 101
+G + + + I S K+ + + ++VQ +FQDP AS N
Sbjct: 66 DFNGFVTLDDQIISGESISKKREKFLRKRVQMIFQDPHASLN 107
>pir||D71550 probable ABC transporter ATPase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328554|gb|AAC67743.1| (AE001289)
ABC Transporter ATPase [Chlamydia trachomatis]
Length = 225
Score = 84.7 bits (206), Expect = 1e-15
Identities = 67/217 (30%), Positives = 116/217 (52%), Gaps = 16/217 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L+E ++++K+ + + + VSF ++ GE+V++ G SGSGK+++ L+ L
Sbjct: 3 ILVEAKHISKVIQQQDVC---IPILKDVSFQLHAGEVVAITGASGSGKSSLLHLLGTLDQ 59
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF-- 118
P+SG+ILF GK + ++EL + ++ +FQ +F L + +++ +
Sbjct: 60 PSSGQILFFGKQV---RREELPIFRNCRIGFIFQ----NFYLLEDDSVINNVLMPAQIAR 112
Query: 119 PDLGREER-EEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
D G++ + E LE VGL + R + LSGG+ QR+ IARAL+ P +++ADE
Sbjct: 113 KDTGQKSKARERALALLESVGL--VDRRDEKGSLLSGGEKQRVAIARALMNDPEIVLADE 170
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLAL 214
LD T + LL +K+ VL +THD L
Sbjct: 171 PSGNLDHRTADTIHELLLALAEKH-RGVLIVTHDREL 206
>pir||E72314 ribose ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981493|gb|AAD36035.1|AE001758_13
(AE001758) ribose ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 523
Score = 84.3 bits (205), Expect = 2e-15
Identities = 68/247 (27%), Positives = 124/247 (49%), Gaps = 19/247 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LLE +N+TK F V AV+ V+ I +GE+ +LVGE+G+GK+T+ K++ +
Sbjct: 11 VLLEARNITKTFPG-------VIAVNNVTLQIYKGEVCALVGENGAGKSTLMKILAGVYP 63
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G+I EGK++ + +E + A+ L + +F + +
Sbjct: 64 DYEGQIFLEGKEVRFRNPREAQ----ENGIALIPQELDLVPNLSSAENIF--LSREPVNE 117
Query: 121 LGREEREEMIDKA---LEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
G E ++M ++A ++G+N + + K LS Q Q + IA+AL L +++I DE
Sbjct: 118 FGVIEYQKMFEQASKLFSKLGVN-IDPKTKV-EDLSTSQQQMVAIAKALSLDAKIIIMDE 175
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
S + + N++ +++ G SV++I+H L + I+D ++M G V G E
Sbjct: 176 PTSAIGKRETEQLFNIIRSLKNE-GKSVIYISHRLEEIFEIADRVVVMRDGRKVGEGPIE 234
Query: 238 KVFHNPL 244
+ H+ L
Sbjct: 235 EFDHDKL 241
>pir||E81261 probable ABC transport system ATP-binding protein Cj1647 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6969064|emb|CAB73635.1| (AL139079) putative ABC
transport system ATP-binding protein [Campylobacter
jejuni]
Length = 240
Score = 83.5 bits (203), Expect = 3e-15
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 12/239 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M+++ QN+ F ++ DGVSF I + EI ++G SGSGK+ + K +L L
Sbjct: 1 MVIKAQNIITKFGEKIVH-------DGVSFEIKKNEIFGILGGSGSGKSVLLKQMLMLEH 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G G + ++++ +K VFQ FA+ V + + Y
Sbjct: 54 FDDGEYEILGYKLKNINEEDALALR-KKWGVVFQ--FAALFSFFNVYENIAIPLKEY-TH 109
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
L +E++ L+ VGLN S ++ ++P +LSGG +R+ IARAL L +LL DE S
Sbjct: 110 LDENSIQELVLMKLKMVGLNESVLK-QFPSELSGGMQKRVAIARALALDSKLLFLDEPTS 168
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKV 239
LD + + +L+ E + + +++ +THD + D II+ + G E++
Sbjct: 169 GLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKVGFCGTYEEL 227
>pir||D72485 probable high-affinity branched-chain amino acid transport
ATP-binding protein APE2524 - Aeropyrum pernix (strain
K1) >gi|5106229|dbj|BAA81540.1| (AP000064) 242aa long
hypothetical high-affinity branched-chain amino acid
transport ATP-binding protein [Aeropyrum pernix]
Length = 242
Score = 82.7 bits (201), Expect = 5e-15
Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 17/244 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+V+++ K F GG + A+ GVSF++ GE V L+G +G+GKTT+ +I +
Sbjct: 6 IILDVRDVYKRF-----GG--IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYM 58
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P GR++++G DI + YR+ +A F PL + + ++I +
Sbjct: 59 PDRGRVIYKGVDITGWPA-------YRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRT 111
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
E E +A++ VGL E L+ + +R+ +ARAL +P LL+ DE +
Sbjct: 112 NDIREARERAMEAIDMVGLAGKE--DILAKDLNLIEKKRLELARALATQPELLLLDEIAA 169
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
L D++ L E K G +++ + H + ++ I+++ G + G +V
Sbjct: 170 GLRPREVDDLVYTLLEI-SKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVA 228
Query: 241 HNPL 244
N L
Sbjct: 229 SNKL 232
>pir||D71179 probable sugar ABC transporter - Pyrococcus horikoshii
>gi|3258144|dbj|BAA30827.1| (AP000007) 498aa long
hypothetical sugar transport ATP-binding protein
[Pyrococcus horikoshii]
Length = 498
Score = 82.3 bits (200), Expect = 7e-15
Identities = 78/305 (25%), Positives = 146/305 (47%), Gaps = 41/305 (13%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+ +E++ + K++ G++ A+ GV FT+ EGEI L+GE+G+GK+T+ +++ +
Sbjct: 2 LAVEMRRIYKVYPDGVV------ALKGVDFTVEEGEIHGLLGENGAGKSTLMRILYGEIK 55
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PT G + G D ++F+ RK A+ F + P V + ++ + P+
Sbjct: 56 PTKGEVKVFG-DKVEFNG---PWDAIRKGIAMVYQHF-TLIPTFTVLENLYLSMLTINPN 110
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ E ++ + ++++G S L G QR+ I +AL+ ++LI DE S
Sbjct: 111 ITINEVRKLAKEKMKDIGF--SVPLDDVVEDLPIGIQQRVEIIKALMANAKILILDEPTS 168
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVF 240
+L ++ L + ++ G +V+FITH L I+D ++ RG +V + +T++V
Sbjct: 169 VLTPLEVEELFKTLRKLKEN-GITVIFITHKLKEVKEITDRVTVLRRGEVVGVAKTKEVS 227
Query: 241 HNPLHPYTKMLLE-------------------SVPDLNVKWE-----FKGIEPEKEEGKV 276
L KM+++ V DL VK + KG+ E +EG++
Sbjct: 228 ERDL---AKMMVQREIVMEIKKSPASPGNTVLRVEDLWVKDDRGLDAVKGVSFELKEGEI 284
Query: 277 WKIKG 281
I G
Sbjct: 285 LGIAG 289
>pir||G72687 probable high-affinity branched-chain amino acid transport
ATP-binding protein APE0919 - Aeropyrum pernix (strain
K1) >gi|5104588|dbj|BAA79903.1| (AP000060) 254aa long
hypothetical high-affinity branched-chain amino acid
transport ATP-binding protein [Aeropyrum pernix]
Length = 254
Score = 81.9 bits (199), Expect = 9e-15
Identities = 68/251 (27%), Positives = 118/251 (46%), Gaps = 16/251 (6%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L V++L K F GG + A+D V+ I G++ L+G +GSGKTT+ +I
Sbjct: 5 IILRVEDLEKRF-----GG--IVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYK 57
Query: 61 PTSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS-YF 118
P GR+LF+G+DI S E+ K R Q PF + L V ++ Y
Sbjct: 58 PDGGRVLFKGRDITGMSPHEISKLGLVRTFQ--IPKPFTNLTVLENVLTAADSPGENVYL 115
Query: 119 PDLGRE----EREEMIDKALEEVG-LNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLL 173
L R + +A E +G + + + +LSGGQ++ + IARA++ ++
Sbjct: 116 AGLARRLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMI 175
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
I DE + ++ ++ + + G + L I H + L D M G ++
Sbjct: 176 IMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIAS 235
Query: 234 GETEKVFHNPL 244
G+ ++V +NP+
Sbjct: 236 GKPDEVLNNPV 246
>pir||F72405 ABC transporter, ATP-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980701|gb|AAD35296.1|AE001705_7 (AE001705)
ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 233
Score = 80.8 bits (196), Expect = 2e-14
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 38/225 (16%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
++L+V+ L K F V+ ++ F++ +GE V+L+G SG GKTT +++
Sbjct: 6 VILKVEGLRKDFNG-------VKVIENWGFSVGKGERVALLGPSGCGKTTFLRIV----- 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
SG ++GK + K+ VFQ+P P + + +I
Sbjct: 54 --SGLEDYQGK----------VKVFTDKIGYVFQEP--RLIPWKTITENLMLI------- 92
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ I LE+V L E YP QLS G QR+ RALL+ P LL+ DE
Sbjct: 93 ---RRDTDRIASLLEKVELKGFE--NHYPWQLSEGMKQRVNFVRALLVDPDLLLLDEPFD 147
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIM 225
LD T++ V++LL + K S++F+TH++ ++S+ ++
Sbjct: 148 ALDLKTKMKVMDLLVDLWQKRRFSIVFVTHNVKEAVFLSERIFLL 192
>sp|P15031|FECE_ECOLI IRON(III) DICITRATE TRANSPORT ATP-BINDING PROTEIN FECE
>gi|72451|pir||QRECM3 membrane-bound iron(III) dicitrate
transport protein - Escherichia coli
>gi|145928|gb|AAA23765.1| (M26397) fecE [Escherichia
coli] >gi|537128|gb|AAA97183.1| (U14003) fecE gene
product [Escherichia coli] >gi|1790739|gb|AAC77243.1|
(AE000499) ATP-binding component of citrate-dependent
iron(III) transport protein [Escherichia coli K12]
Length = 255
Score = 80.4 bits (195), Expect = 3e-14
Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 28/246 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M L +NLT + + + ++ VS ++ G+I +L+G +G GK+T+ RLL
Sbjct: 1 MTLRTENLTVSYGTD-------KVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLM 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVD----KVFHMIFDS 116
P SG + I S ++L R++ S P H + V ++
Sbjct: 54 PQSGTVFLGDNPINMLSSRQLA----RRL---------SLLPQHHLTPEGITVQELVSYG 100
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRG---KYPHQLSGGQLQRILIARALLLKPRLL 173
P L R D A V +N + + + +LSGGQ QR +A L ++
Sbjct: 101 RNPWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVV 160
Query: 174 IADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEM 233
+ DE + LD + ++D++ L+GE R + G +V+ + HDL D ++M G ++
Sbjct: 161 LLDEPTTYLDINHQVDLMRLMGELRTQ-GKTVVAVLHDLNQASRYCDQLVVMANGHVMAQ 219
Query: 234 GETEKV 239
G E+V
Sbjct: 220 GTPEEV 225
>dbj|BAB11402.1| (AP002543) ABC transporter-like protein [Arabidopsis thaliana]
Length = 567
Score = 80.4 bits (195), Expect = 3e-14
Identities = 59/244 (24%), Positives = 123/244 (50%), Gaps = 15/244 (6%)
Query: 1 MLLEVQNLT-KIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
+ L+ +++T K+ L + + G+S ++N GE+++L+G SGSGKTT+ L+ +
Sbjct: 31 IFLKFRDVTYKVVIKKLTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRI 90
Query: 60 TPTS--GRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSY 117
+ +S G + + K K+ K K+ V QD F L + + +
Sbjct: 91 SQSSTGGSVTYNDKPYSKYLKS--------KIGFVTQDDVL-FPHLTVKETLTYAARLRL 141
Query: 118 FPDLGREEREEMIDKALEEVGLNPSE---VRGKYPHQLSGGQLQRILIARALLLKPRLLI 174
L RE++++ ++E+GL + + G + +SGG+ +R+ I +++ P LL+
Sbjct: 142 PKTLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLL 201
Query: 175 ADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMG 234
DE S LD++T + + +L + + T + I + ++ D I++ RG+++ G
Sbjct: 202 LDEPTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFG 261
Query: 235 ETEK 238
++ +
Sbjct: 262 KSSE 265
>pir||F71554 probable ABC amino acid transporter ATPase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328529|gb|AAC67721.1|
(AE001286) ABC Amino Acid Transporter ATPase [Chlamydia
trachomatis]
Length = 233
Score = 79.2 bits (192), Expect = 6e-14
Identities = 76/235 (32%), Positives = 111/235 (46%), Gaps = 35/235 (14%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +EV++LT + G ++ + VSF++ I +G SGSGKTTI + ++ L
Sbjct: 1 MTVEVKDLTVA-----VKGKEI--LSNVSFSLVPRRITLFIGRSGSGKTTILRSLVGLTP 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFH--MIFDSYF 118
+SG I G D F VFQ P F + +D H MI
Sbjct: 54 ISSGSISVVG-DPPGF---------------VFQQP-ELFPHMTVLDNCAHPQMIVKKL- 95
Query: 119 PDLGREEREEMIDKALEEVG-LNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
ERE DKAL+ +G L E YPHQLSGGQ QR+ IARAL L R ++ DE
Sbjct: 96 -----REREAK-DKALDLLGMLELREYASSYPHQLSGGQRQRVAIARALALDMRTILFDE 149
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
S LD + L ++ +++ G ++ THD+ D ++ +G I++
Sbjct: 150 PTSALDPFSASKFLQIVLSLKEQ-GMTIAISTHDILFINQCLDRVYLVDKGQIID 203
>pir||D72101 ABC transporter ATPase - Chlamydophila pneumoniae (strain CWL029)
>gi|4376523|gb|AAD18401.1| (AE001610) ABC Transporter
ATPase [Chlamydophila pneumoniae CWL029]
>gi|8163447|gb|AAF73679.1| (AE002211) ABC transporter,
ATP-binding protein [Chlamydophila pneumoniae AR39]
>gi|8978621|dbj|BAA98458.1| (AP002545) ABC transporter
ATPase [Chlamydophila pneumoniae J138]
Length = 226
Score = 78.8 bits (191), Expect = 8e-14
Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 12/212 (5%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+L+E +NL+K + + VS +++ GE +S+ G SG+GKTT+ L+ L
Sbjct: 3 LLIEAKNLSKTIQQQ---NQNISILTDVSLSLHAGETISITGASGNGKTTLLHLLGTLDV 59
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P+SG + F KD+ ++L + + + VFQ+ F L + +++ +
Sbjct: 60 PSSGSLRFFDKDL---KNQDLANFRNQHIGFVFQN----FYLLEDDTVLKNVLMPALIAR 112
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYP-HQLSGGQLQRILIARALLLKPRLLIADEAV 179
+ + +ALE + L E + + +LSGG+ QR+ IARAL+ +P +L+ADE
Sbjct: 113 KNISKGSPVYTRALELLDLVNLEDKVRTRCSKLSGGEKQRVAIARALINEPAILLADEPS 172
Query: 180 SMLDASTRIDVLNLLGEFRDKYGTSVLFITHD 211
LD T + NLL E +L +TH+
Sbjct: 173 GNLDEETSEQIHNLLLEQASAL-CGILIVTHN 203
>gb|AAK41504.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 286
Score = 78.4 bits (190), Expect = 1e-13
Identities = 69/240 (28%), Positives = 106/240 (43%), Gaps = 27/240 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +EV++L K F G +V + GVSF + G I +G +G+GKTT K++ LL
Sbjct: 1 MTIEVEDLRKKFA-----GKEV--LKGVSFKLRSGSITGFIGPNGAGKTTTIKILSGLLR 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
G + G+D K ++ +F N +H + Y D
Sbjct: 54 KDGGFVKVFGEDPWDNPK------VMERISVIFT------NLIHPQENTV----GEYLMD 97
Query: 121 LGRE--EREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
LG ++ E+I+ +EE L P K +QLS G QR+ + AL+ L+IADE
Sbjct: 98 LGNVYGKKREIINYLIEEFKLTPH--LNKRLYQLSSGLAQRVQLVAALIKDVELIIADEP 155
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
+ LD S RI+ ++ E K G + +H L+ + I + G I G K
Sbjct: 156 TANLDPSFRIEFYEVVKELNRKNGVTFFISSHILSELEKVITDVIFINDGRITYSGRMNK 215
>pir||T44443 gliding motility protein [imported] - Flavobacterium johnsoniae
>gi|2281663|gb|AAC19751.1| (AF007381) gliding motility
protein [Flavobacterium johnsoniae]
Length = 298
Score = 78.0 bits (189), Expect = 1e-13
Identities = 65/232 (28%), Positives = 116/232 (49%), Gaps = 26/232 (11%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +EV +++K + + +A++ +SF I +GEIV +G +G+GK+T+ K++ L
Sbjct: 1 MSIEVNSISKSYG-------EQKALNEISFKIEKGEIVGFLGPNGAGKSTLMKILTTYLL 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
SG L G D+M +K ++ Y NPL+ ++ + ++ D
Sbjct: 54 ADSGSALVNGHDVMTNAKAVQQSIGY----------LPEHNPLYL--DLYVREYLAFNAD 101
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
+ + + I++ ++ GL P K QLS G QR+ +A ALL P +LI DE +
Sbjct: 102 VYKVPKSR-IEEVIQLTGLTPES--HKKISQLSKGYRQRVGLANALLHNPDVLILDEPTT 158
Query: 181 MLDASTRIDVLNLLGEF-RDKYGTSVLFITHDLALGYYISDSTIIMYRGTIV 231
LD + +++ N++ +DK ++ TH + I D II+ +G IV
Sbjct: 159 GLDPNQLMEIRNVIKNIGKDK---TIFLSTHIMQEVEAICDRVIIIDKGQIV 207
>gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . carboxy-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 103
Score = 77.6 bits (188), Expect = 2e-13
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 224 IMYRGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKI---- 279
+MY G +VE+G E+V PLHPYT+ LL++VP V GI+ +G++
Sbjct: 10 VMYLGKVVEIGTPEEVISEPLHPYTQALLQAVP---VPDPDIGIKEPNIKGEIQSPLELP 66
Query: 280 KGCRYAPRCPKAKDVCFKIRPTLIEVEKNHWVACHLY 316
KGC + RCP AKD+C + P + ++ +H+VACHLY
Sbjct: 67 KGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHLY 103
>pir||D70984 probable drrA protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1781083|emb|CAB06095.1| (Z83857) drrA [Mycobacterium
tuberculosis]
Length = 331
Score = 76.9 bits (186), Expect = 3e-13
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 21/261 (8%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M + V + K + G ++ A+D VSF + GE++ L+G +G+GKTT+ ++ L
Sbjct: 6 MAVVVNGVRKTYGKG-----KIVALDDVSFKVRRGEVIGLLGPNGAGKTTMVDILSTLTR 60
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
P +G + G D++ ++ Q D + L +++
Sbjct: 61 PDAGSAIIAGYDVVSEPAGVRRSIMVTGQQVAVDDALSGEQNLVLFGRLW---------G 111
Query: 121 LGREEREEMIDKALEEVGLNPSEVR--GKYPHQLSGGQLQRILIARALLLKPRLLIADEA 178
L + + + LE+ L + R G Y SGG +RI IA L+++P++ DE
Sbjct: 112 LSKSAARKRAAELLEQFSLVHAGKRRVGTY----SGGMRRRIDIACGLVVQPQVAFLDEP 167
Query: 179 VSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
+ LD +R + +L+ F+ K G + L T L +SD I++ G I+ G +
Sbjct: 168 TTGLDPRSRQAIWDLVASFK-KLGIATLLTTQYLEEADALSDRIILIDHGIIIAEGTANE 226
Query: 239 VFHNPLHPYTKMLLESVPDLN 259
+ H + +++ + DL+
Sbjct: 227 LKHRAGDTFCEIVPRDLKDLD 247
>pir||G71131 probable ATP-binding protein - Pyrococcus horikoshii
>gi|3257230|dbj|BAA29913.1| (AP000003) 312aa long
hypothetical ATP-binding protein [Pyrococcus horikoshii]
Length = 312
Score = 76.5 bits (185), Expect = 4e-13
Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+++E NLTK + G + AV GV+F++NEGE+ +G +G+GKTT +++ +L
Sbjct: 6 VVIEAINLTKYY-----GNFP--AVRGVTFSVNEGEVFGFLGPNGAGKTTTIRMLTGVLK 58
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
PTSG++ G D+ + +K LK + +P+ + + K+ ++ P
Sbjct: 59 PTSGQVRVLGYDMTREPEK-LKARQRMGIVPEMANPYIDLTAMQNL-KLMGELYG--LPK 114
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
E+R + K E +VRG S G QR+++A A++ P L DE S
Sbjct: 115 WEIEKRSIELLKLFELYEKRNIKVRG-----FSKGMRQRLVLAMAMIADPELYFLDEPTS 169
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
LD + + +++ + K G ++ TH++ + + I+ +G +V + E
Sbjct: 170 GLDVISARIIKDIIRD-EKKAGKTIFLTTHNMNDANELCERIGIIRKGKLVAIDTPE 225
>pir||D81706 amino acid ABC transporter, ATP-binding protein TC0406 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190448|gb|AAF39263.1| (AE002307) amino acid ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 231
Score = 75.7 bits (183), Expect = 7e-13
Identities = 71/234 (30%), Positives = 110/234 (46%), Gaps = 35/234 (14%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
M +EV+NL + G ++ + SF++ G I +G SGSGKTTI + ++ L
Sbjct: 1 MTVEVKNLAVS-----VNGKEI--LSKASFSLIPGRITLFIGRSGSGKTTILRSLVGLAP 53
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
++G I G D F VFQ P F + +D H P
Sbjct: 54 ISNGSISIAG-DPPGF---------------VFQQP-ELFPHMTVLDNCVH-------PQ 89
Query: 121 LGREERE--EMIDKALEEVG-LNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+ + R+ E ++A+E +G L E YP+QLSGGQ QR+ IARAL L R ++ DE
Sbjct: 90 IVVKNRDPKEAKERAMELLGMLEIREYALSYPNQLSGGQRQRVAIARALSLDTRTILFDE 149
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIV 231
S LD + L ++ +D+ G ++ THD+ D ++ +G I+
Sbjct: 150 PTSALDPFSASRFLQMVLSLKDQ-GMTIAISTHDMLFINQCLDRVYLIDKGRII 202
>emb|CAC11348.1| (AL445063) FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC related
protein [Thermoplasma acidophilum]
Length = 246
Score = 74.1 bits (179), Expect = 2e-12
Identities = 69/243 (28%), Positives = 117/243 (47%), Gaps = 24/243 (9%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRL-- 58
M+LE++NL S + Q+ + V+ I GEI +L+G +G+GK+T+G +++
Sbjct: 1 MILEIRNL-----SASVEDKQI--LKDVNLKIGGGEIHALMGPNGAGKSTLGNVLIGHPD 53
Query: 59 LTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYF 118
T G+I+ +GKDI + +E + FQ P A ++ + +
Sbjct: 54 YKITGGQIILDGKDITYATPEERAR---AGLFLAFQSPVAVEGV--RISTFLRIAYSHLH 108
Query: 119 PD--LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
PD + E + I +A++ VGL+ S + SGG+ +R I + L+LKP+++I D
Sbjct: 109 PDEKIVISEFNKRIKEAMKTVGLDESFISRSVNDGFSGGERKRFEILQMLILKPKMIILD 168
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKY---GTSVLFITHDLALGYYISDSTI-IMYRGTIVE 232
E S LD +D L ++ E KY L ITH + I + ++ GTI
Sbjct: 169 EIDSGLD----VDALRMVAEQLKKYFSKDVGYLIITHYQRILKDIEPQFVHVLVNGTIAI 224
Query: 233 MGE 235
G+
Sbjct: 225 NGD 227
>pir||F81431 ABC transporter ATP-binding protein Cj0142c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967636|emb|CAB72626.1| (AL139074) ABC transporter
ATP-binding protein [Campylobacter jejuni]
Length = 284
Score = 73.7 bits (178), Expect = 3e-12
Identities = 65/242 (26%), Positives = 115/242 (46%), Gaps = 31/242 (12%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+ E+ NL + + +I + ++ + + + +S++G +G+GK+T+ KLIL LL
Sbjct: 2 LFFEISNLNYAYDNEII-------LKNINLSYDNKDFLSIIGPNGAGKSTLVKLILGLLK 54
Query: 61 PTSGRILFEGKDIMKFSKKEL--KTYYYRKVQAVFQDPFASFNPLHQVDKVFHM--IFDS 116
SK E+ K +++ V Q A+ N +V ++ M +
Sbjct: 55 ----------------SKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKK 98
Query: 117 YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIAD 176
F G++++E+ + +AL+ VG+ + K LSGGQ QR+ IARAL + ++LI D
Sbjct: 99 IFGFYGKKDKEKAM-QALKSVGME--KFWNKTIDSLSGGQRQRVFIARALASECKMLILD 155
Query: 177 EAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGET 236
E + +D + I + LL K G +L I HD+ L SD + + +
Sbjct: 156 EPTASVDNKSAIQIFELLISLHQK-GMGILLICHDINLVLAYSDKIAHLNKELFLHTNTK 214
Query: 237 EK 238
EK
Sbjct: 215 EK 216
>pir||I40516 spaF protein - Bacillus subtilis
Length = 456
Score = 73.0 bits (176), Expect = 5e-12
Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 26/238 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LLE ++LTK F + AV VS T+ + I L+G +G+GK+T K++ +L
Sbjct: 13 VLLETKSLTKKFG-------KETAVADVSLTVQKNSIYGLLGPNGAGKSTTLKILTGILR 65
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
TSG ILF+G K+ + +L+T + ++ + P PL+ F + +
Sbjct: 66 KTSGEILFDGH---KWKRSDLQT-----IGSLIEAP-----PLYDNLTAFENV-KVHATL 111
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
LG E+ I L+ V + K Q S G QR+ IA ALL P+LLI DE +
Sbjct: 112 LGLS--EDRIHSVLKTVDM--QHAGKKRAGQFSMGMRQRLGIAIALLNHPKLLILDEPTN 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
LD ++ +L+ F + G +V+ +H L+ I+D I+ G + GE K
Sbjct: 168 GLDPIGIQELRDLIRSFPQE-GITVILSSHILSEVEQIADHIGIIIDGHLGYQGEINK 224
>gb|AAB91597.1| (U09819) SpaF [Bacillus subtilis]
Length = 247
Score = 73.0 bits (176), Expect = 5e-12
Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 26/238 (10%)
Query: 1 MLLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLT 60
+LLE ++LTK F + AV VS T+ + I L+G +G+GK+T K++ +L
Sbjct: 13 VLLETKSLTKKFG-------KETAVADVSLTVQKNSIYGLLGPNGAGKSTTLKILTGILR 65
Query: 61 PTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDSYFPD 120
TSG ILF+G K+ + +L+T + ++ + P PL+ F + +
Sbjct: 66 KTSGEILFDGH---KWKRSDLQT-----IGSLIEAP-----PLYDNLTAFENV-KVHATL 111
Query: 121 LGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADEAVS 180
LG E+ I L+ V + K Q S G QR+ IA ALL P+LLI DE +
Sbjct: 112 LGLS--EDRIHSVLKTVDM--QHAGKKRAGQFSMGMRQRLGIAIALLNHPKLLILDEPTN 167
Query: 181 MLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEK 238
LD ++ +L+ F + G +V+ +H L+ I+D I+ G + GE K
Sbjct: 168 GLDPIGIQELRDLIRSFPQE-GITVILSSHILSEVEQIADHIGIIIDGHLGYQGEINK 224
>pir||T18288 ABC transport protein - slime mold (Dictyostelium discoideum)
(fragment) >gi|1513298|gb|AAB06789.1| (U66526) AbcA
[Dictyostelium discoideum]
Length = 1336
Score = 70.2 bits (169), Expect = 3e-11
Identities = 71/323 (21%), Positives = 141/323 (42%), Gaps = 34/323 (10%)
Query: 3 LEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTPT 62
L + L+K +T V AV +S ++ +G I+ +G +G GK+T ++ LL PT
Sbjct: 379 LIICGLSKSYTKLFRPKKTVHAVKYLSLSVEKGTILGFLGSNGCGKSTTIGMLTGLLEPT 438
Query: 63 SGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLH-----QVDKVFHMIFDSY 117
+G L G ++ + AV + S P H ++ H+ S
Sbjct: 439 AGDALVYGHSVIS------------NIAAVRR--ITSVVPQHDILWAEMTAREHLQLFSE 484
Query: 118 FPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIADE 177
+ +ERE I K L++V L S++ SGG +R+ +A A + P+++ DE
Sbjct: 485 LKGIPAQERESQIQKVLDQVRL--SKISNNLISTYSGGMKRRLSVAIACIGDPKIIFMDE 542
Query: 178 AVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETE 237
+ +D S++ +++L+ K ++ +HD+ ++D +IM G + G +
Sbjct: 543 PTTGVDPSSKRHLIDLVKSI--KNDKVIILTSHDMHEVEILADKIVIMNEGVMACNGNSL 600
Query: 238 KVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFK 297
++ Y+ ++ P+ P E I GC++ + A + F
Sbjct: 601 QLKSKYGEGYSVNIVAKSPE---------SIPAVVEFVTLSIPGCKFMKQ--SALQLNFG 649
Query: 298 IRPTLIEVEKNHWVACHLYQSSR 320
T+ +++ + +V C L ++ +
Sbjct: 650 FPVTIDQLKYDWFVKCILLENRK 672
>gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Mycoplasma bovis]
Length = 156
Score = 68.7 bits (165), Expect = 9e-11
Identities = 38/128 (29%), Positives = 68/128 (52%), Gaps = 6/128 (4%)
Query: 190 VLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGETEKVFHNPLHPYTK 249
VL L + R +Y S++ I+H++++ + +MY G IVE G + +F NP HPYT
Sbjct: 3 VLALFEQIRQEYNISIILISHNISVVAKFCEYIYVMYAGKIVERGTRKDIFTNPAHPYTW 62
Query: 250 MLLESVPDLNVK--WEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVCFKIRPTLIEVEK 307
L+ ++P+ + + + +G P+ + G +APR A ++ ++ P LIE+
Sbjct: 63 ALISAIPENDDERLFSIQGTPPDMANLPI----GDPFAPRNDFALEIDYEKEPPLIEINS 118
Query: 308 NHWVACHL 315
+H A L
Sbjct: 119 HHKAATWL 126
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122362782
Number of Sequences: 2977
Number of extensions: 5283835
Number of successful extensions: 22547
Number of sequences better than 1.0e-10: 1685
Number of HSP's better than 0.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 1282
Number of HSP's that attempted gapping in prelim test: 19443
Number of HSP's gapped (non-prelim): 2094
length of query: 322
length of database: 189,106,746
effective HSP length: 54
effective length of query: 268
effective length of database: 156,788,448
effective search space: 42019304064
effective search space used: 42019304064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)