BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0635 (PAB0635) DE:Hypothetical protein
         (158 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75069 hypothetical protein PAB0635 - Pyrococcus abyssi (st...   322  1e-87
pir||B71096 hypothetical protein PH1031 - Pyrococcus horikoshii ...   272  2e-72

>pir||D75069 hypothetical protein PAB0635 - Pyrococcus abyssi (strain Orsay)
           >gi|5458369|emb|CAB49857.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 158
           
 Score =  322 bits (817), Expect = 1e-87
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MFNMLGFFRRKKKKFGPLIYLSEPTILYHTKTEKVILEIIEEKLNSNNVILPSDYGLRDV 60
           MFNMLGFFRRKKKKFGPLIYLSEPTILYHTKTEKVILEIIEEKLNSNNVILPSDYGLRDV
Sbjct: 1   MFNMLGFFRRKKKKFGPLIYLSEPTILYHTKTEKVILEIIEEKLNSNNVILPSDYGLRDV 60

Query: 61  SDKIAEVDYLVAVAIMGRFSSLVGREVKKAENFGKKVYTLDIAKTPESLVYILTEGVPEH 120
           SDKIAEVDYLVAVAIMGRFSSLVGREVKKAENFGKKVYTLDIAKTPESLVYILTEGVPEH
Sbjct: 61  SDKIAEVDYLVAVAIMGRFSSLVGREVKKAENFGKKVYTLDIAKTPESLVYILTEGVPEH 120

Query: 121 IKWLNEEETFEFFNQFIAKDFLGSSFRGLFIGYRDHEW 158
           IKWLNEEETFEFFNQFIAKDFLGSSFRGLFIGYRDHEW
Sbjct: 121 IKWLNEEETFEFFNQFIAKDFLGSSFRGLFIGYRDHEW 158


>pir||B71096 hypothetical protein PH1031 - Pyrococcus horikoshii
           >gi|3257445|dbj|BAA30128.1| (AP000004) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score =  272 bits (688), Expect = 2e-72
 Identities = 128/158 (81%), Positives = 142/158 (89%)

Query: 1   MFNMLGFFRRKKKKFGPLIYLSEPTILYHTKTEKVILEIIEEKLNSNNVILPSDYGLRDV 60
           M  M GF +RK+KKFGPLIYLSEPTILYHTKTEK+ILEIIEE LNSNNVILPSDYGLRD+
Sbjct: 1   MLEMFGFLKRKRKKFGPLIYLSEPTILYHTKTEKIILEIIEENLNSNNVILPSDYGLRDI 60

Query: 61  SDKIAEVDYLVAVAIMGRFSSLVGREVKKAENFGKKVYTLDIAKTPESLVYILTEGVPEH 120
           SDKIAEVDYLVAVAI G+FSSLV REV+KA+   KK+YTLDI KTP+SLVY+L EG+PEH
Sbjct: 61  SDKIAEVDYLVAVAIYGKFSSLVCREVEKAKKLNKKIYTLDIGKTPQSLVYMLAEGIPEH 120

Query: 121 IKWLNEEETFEFFNQFIAKDFLGSSFRGLFIGYRDHEW 158
           IKW+NE+ET EFF QFIAKDFLGS  RGLF+GYRDHEW
Sbjct: 121 IKWMNEKETEEFFGQFIAKDFLGSGLRGLFLGYRDHEW 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60293018
Number of Sequences: 2977
Number of extensions: 2436409
Number of successful extensions: 5942
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5940
Number of HSP's gapped (non-prelim): 2
length of query: 158
length of database: 189,106,746
effective HSP length: 52
effective length of query: 106
effective length of database: 157,985,422
effective search space: 16746454732
effective search space used: 16746454732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)