BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0637 911066 911626 187 !not a gene!
         (187 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71076 hypothetical protein PH0877 - Pyrococcus horikoshii ...   122  4e-27

>pir||E71076 hypothetical protein PH0877 - Pyrococcus horikoshii
           >gi|3257288|dbj|BAA29971.1| (AP000004) 128aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 128
           
 Score =  122 bits (302), Expect = 4e-27
 Identities = 75/131 (57%), Positives = 87/131 (66%), Gaps = 6/131 (4%)

Query: 18  VASPLIASPPAKTPGIEVIKFSSTIILPFSSTFN--SGTVWRNVLFGVCPIAIIAVSNSM 75
           +ASPLIASPPAKTPGIEVI+FSST I+P     +  S  +   +LFG  P+AII VS S 
Sbjct: 1   MASPLIASPPAKTPGIEVIRFSSTTIVPSGLVLSLPSSVI---ILFGSSPMAIITVSASN 57

Query: 76  TNVSPVGIGLLLPVSSGSPS-FIFSSSIALRFPFSSPMNLFGETRNMNLTPSSSACLISS 134
              SPV    L P+ S S S F+ S+  AL  PFSSPMN  G  +N N TPSSSAC ISS
Sbjct: 58  VTYSPVPTIFLFPLLSRSSSGFVLSNLTALTLPFSSPMNSTGCRKNSNFTPSSSACFISS 117

Query: 135 SLAVISFLVLL 145
           SLAV+S L LL
Sbjct: 118 SLAVMSSLPLL 128


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.135    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64470964
Number of Sequences: 2977
Number of extensions: 2527704
Number of successful extensions: 6852
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6850
Number of HSP's gapped (non-prelim): 1
length of query: 187
length of database: 189,106,746
effective HSP length: 55
effective length of query: 132
effective length of database: 156,189,961
effective search space: 20617074852
effective search space used: 20617074852
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 162 (67.5 bits)