BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0639 (hydG-2) DE:cytochrome-c3 hydrogenase, subunit gamma
(288 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyr... 601 e-171
gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g... 553 e-156
pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyr... 258 6e-68
pir||D75133 cytochrome-c3 hydrogenase, chain gamma PAB1785 - Pyr... 257 1e-67
pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain ... 253 2e-66
emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus... 253 2e-66
gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermo... 249 3e-65
sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|9... 142 4e-33
emb|CAC11195.1| (AL445063) anaerobic sulfite reduction protein B... 136 4e-31
sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 113 3e-24
sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 109 4e-23
sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 107 2e-22
sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 103 2e-21
gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglo... 94 1e-18
sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 93 4e-18
pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii ... 89 6e-17
dbj|BAA12238.1| (D84146) reductase [Pseudomonas aeruginosa] 88 1e-16
sp|Q52126|NDOR_PSEPU NAPHTHALENE 1,2-DIOXYGENASE SYSTEM FERREDOX... 86 4e-16
gb|AAB62705.1| (AF010471) naphthalene-1,2-dioxygenase reductase ... 86 4e-16
gb|AAD02134.1| (AF039533) naphthalene dioxygenase reductase [Pse... 84 2e-15
pir||JN0640 naphthalene 1,2-dioxygenase (EC 1.14.12.12) reductas... 83 4e-15
pir||A55217 naphthalene 1,2-dioxygenase (EC 1.14.12.12) reductas... 82 1e-14
pir||S47292 phenol 2-monooxygenase (EC 1.14.13.7) chain mopP - A... 80 3e-14
sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 80 3e-14
pir||F75069 hydrogenase, chain gamma related protein PAB1737 - P... 79 5e-14
pir||JC5350 2-nitrotoluene reductase (EC 1.-.-.-) - Pseudomonas ... 76 4e-13
gb|AAD12606.1| (AF036940) ferredoxin reductase [Ralstonia sp. U2] 76 4e-13
gb|AAC69483.1| (AF087482) o-halobenzoate dioxygenase reductase [... 76 4e-13
dbj|BAA23335.1| (D85083) DMS oxygenase component [Acinetobacter ... 75 1e-12
sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 71 1e-11
pir||C83332 toluate 1,2-dioxygenase electron transfer component ... 70 4e-11
>pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyrococcus abyssi
(strain Orsay) >gi|5458373|emb|CAB49861.1| (AJ248286)
cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
abyssi]
Length = 288
Score = 601 bits (1532), Expect = e-171
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MNPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLC 60
MNPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLC
Sbjct: 1 MNPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLC 60
Query: 61 SSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
SSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM
Sbjct: 61 SSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
Query: 121 APLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETP 180
APLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETP
Sbjct: 121 APLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETP 180
Query: 181 SCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRI 240
SCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRI
Sbjct: 181 SCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRI 240
Query: 241 YMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
YMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI
Sbjct: 241 YMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
>gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g [Pyrococcus furiosus]
Length = 288
Score = 553 bits (1409), Expect = e-156
Identities = 255/288 (88%), Positives = 280/288 (96%)
Query: 1 MNPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLC 60
MNPY+SYDARIIEV+ELT REKLFSLKFLD E+EE+FTFKPGQFVIVDIRG GEFPISLC
Sbjct: 1 MNPYRSYDARIIEVKELTSREKLFSLKFLDNEIEENFTFKPGQFVIVDIRGFGEFPISLC 60
Query: 61 SSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
SSPTR+PIQLCIRRVGR+T+ IHK +EGD+IG+RGPYGNGFP++ MEG+ LIL+AGGLGM
Sbjct: 61 SSPTRRPIQLCIRRVGRMTKFIHKMNEGDIIGIRGPYGNGFPMDLMEGSNLILIAGGLGM 120
Query: 121 APLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETP 180
APLRSVLWYAIDSGK+EKIYL+YGTKSYEDILFRDEII+LLKHGEKLNCHVKLAYEVETP
Sbjct: 121 APLRSVLWYAIDSGKYEKIYLFYGTKSYEDILFRDEIIHLLKHGEKLNCHVKLAYEVETP 180
Query: 181 SCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRI 240
SC+YLE+GFSEKVCKG+VTDLFRGE FDVENSYALICGPPVMYK+VI+ELLD+GLSPGRI
Sbjct: 181 SCIYLERGFSEKVCKGVVTDLFRGEEFDVENSYALICGPPVMYKYVIRELLDRGLSPGRI 240
Query: 241 YMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
YMTLERRMRCGVGKCGHCIVGTSVSIKYIC+DGPVF+YWDALSTRGLI
Sbjct: 241 YMTLERRMRCGVGKCGHCIVGTSVSIKYICKDGPVFTYWDALSTRGLI 288
>pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyrococcus
horikoshii >gi|3257711|dbj|BAA30394.1| (AP000005) 292aa
long hypothetical cytochrome-c3 hydrogenase gamma chain
[Pyrococcus horikoshii]
Length = 292
Score = 258 bits (652), Expect = 6e-68
Identities = 134/290 (46%), Positives = 189/290 (64%), Gaps = 14/290 (4%)
Query: 2 NPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCS 61
NPY + ++++V +LT +EKLF +F DP++ E++TFKPGQFV + I G GE PIS+CS
Sbjct: 13 NPYALHRVKVLKVYDLTEKEKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICS 72
Query: 62 SPTRKPI-QLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
SP R+ +LCIRR GR+T ++H+ GD++ VRGPYGNGFP+++ EG L+L+A GLG
Sbjct: 73 SPMRRGFFELCIRRAGRVTTVVHRLKPGDIVLVRGPYGNGFPVDEWEGMDLLLIAAGLGA 132
Query: 121 APLRSVLWYAIDSG-KFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEV-E 178
APLRSV YA+D+ K+ I + +D+LF E+ + E N VK+ V
Sbjct: 133 APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAIKDLAEAEN--VKIIQSVTR 190
Query: 179 TPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPG 238
P+ L G + + +N+ ICGPP MYK V + L++ G P
Sbjct: 191 DPNWPGLH---------GRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPE 241
Query: 239 RIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
IY+TLER+M+CG+GKCGHC+VGTS S+KYIC+DGPVF+Y+D +ST GL+
Sbjct: 242 NIYVTLERKMKCGIGKCGHCVVGTSTSLKYICKDGPVFTYFDIVSTPGLL 291
>pir||D75133 cytochrome-c3 hydrogenase, chain gamma PAB1785 - Pyrococcus abyssi
(strain Orsay) >gi|5458292|emb|CAB49781.1| (AJ248285)
cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
abyssi]
Length = 292
Score = 257 bits (649), Expect = 1e-67
Identities = 136/290 (46%), Positives = 185/290 (62%), Gaps = 14/290 (4%)
Query: 2 NPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCS 61
NPY + ++++V +LT REKLF +F DP++ E++TFKPGQFV + I G GE PIS+CS
Sbjct: 13 NPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICS 72
Query: 62 SPTRKPI-QLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
SP RK +LCIRR GR+T ++H+ GD + VRGPYGNGFP+++ EG L+L+A GLG
Sbjct: 73 SPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGT 132
Query: 121 APLRSVLWYAIDSG-KFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEV-E 178
APLRSV YA+D+ K+ I + +D+LF E+ + E N VK+ V
Sbjct: 133 APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAEN--VKIIQSVTR 190
Query: 179 TPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPG 238
P L G + + +N+ ICGPP MYK V + L++ G P
Sbjct: 191 DPDWPGLH---------GRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRPE 241
Query: 239 RIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
IY+TLERRM+CG+GKCGHC+ GTS S KYIC+DGPVF+Y+D +ST GL+
Sbjct: 242 NIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLL 291
>pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain - Pyrococcus
furiosus
Length = 292
Score = 253 bits (640), Expect = 2e-66
Identities = 136/290 (46%), Positives = 184/290 (62%), Gaps = 14/290 (4%)
Query: 2 NPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCS 61
NPY + ++++V LT EKLF +F DPE+ E +TFKPGQFV + I G GE PIS+CS
Sbjct: 13 NPYALHRVKVLKVYSLTETEKLFLFRFEDPELAEKWTFKPGQFVQLTIPGVGEVPISICS 72
Query: 62 SPTRKPI-QLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
SP RK +LCIR+ GR+T ++H+ GD + VRGPYGNGFP+++ EG L+L+A GLG
Sbjct: 73 SPMRKGFFELCIRKAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGT 132
Query: 121 APLRSVLWYAIDSG-KFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEV-E 178
APLRSV YA+D+ K+ I + +D+LF E+ + E N VK+ V
Sbjct: 133 APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAEN--VKIIQSVTR 190
Query: 179 TPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPG 238
P+ L KG + + +N+ ICGPP MYK V + L++ G P
Sbjct: 191 DPNWPGL---------KGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPE 241
Query: 239 RIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
I++TLERRM+CG+GKCGHC VGTS S KYIC+DGPVF+Y+D +ST GL+
Sbjct: 242 NIFVTLERRMKCGIGKCGHCNVGTSTSWKYICKDGPVFTYFDIVSTPGLL 291
>emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus furiosus]
Length = 291
Score = 253 bits (640), Expect = 2e-66
Identities = 136/290 (46%), Positives = 184/290 (62%), Gaps = 14/290 (4%)
Query: 2 NPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCS 61
NPY + ++++V LT EKLF +F DPE+ E +TFKPGQFV + I G GE PIS+CS
Sbjct: 12 NPYALHRVKVLKVYSLTETEKLFLFRFEDPELAEKWTFKPGQFVQLTIPGVGEVPISICS 71
Query: 62 SPTRKPI-QLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
SP RK +LCIR+ GR+T ++H+ GD + VRGPYGNGFP+++ EG L+L+A GLG
Sbjct: 72 SPMRKGFFELCIRKAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGT 131
Query: 121 APLRSVLWYAIDSG-KFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEV-E 178
APLRSV YA+D+ K+ I + +D+LF E+ + E N VK+ V
Sbjct: 132 APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAEN--VKIIQSVTR 189
Query: 179 TPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPG 238
P+ L KG + + +N+ ICGPP MYK V + L++ G P
Sbjct: 190 DPNWPGL---------KGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPE 240
Query: 239 RIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
I++TLERRM+CG+GKCGHC VGTS S KYIC+DGPVF+Y+D +ST GL+
Sbjct: 241 NIFVTLERRMKCGIGKCGHCNVGTSTSWKYICKDGPVFTYFDIVSTPGLL 290
>gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermococcus litoralis]
Length = 296
Score = 249 bits (629), Expect = 3e-65
Identities = 134/290 (46%), Positives = 182/290 (62%), Gaps = 14/290 (4%)
Query: 2 NPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCS 61
NPY R++ V +LT EKLF +F DP + E++TFKPGQFV + I G GE PIS+CS
Sbjct: 17 NPYALERVRVLRVYQLTELEKLFLFRFEDPTIAENWTFKPGQFVQLTIPGIGEVPISVCS 76
Query: 62 SPTRKPI-QLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
SP R+ +LCIR+ GR+T ++HK GD + VRGPYGNGFP+++ EG L+L+A GLG
Sbjct: 77 SPMRQGFFELCIRKAGRVTTVVHKLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGT 136
Query: 121 APLRSVLWYAIDSG-KFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEV-E 178
APLRSV YA+D+ K+ I + +D+LF E+ + E N VK+ V
Sbjct: 137 APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDIAEAEN--VKIIQSVTR 194
Query: 179 TPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPG 238
P L KG + + + +N+ ICGPP MYK V + L++ G P
Sbjct: 195 DPDWPGL---------KGRPQNFIVEANTNPKNTAVAICGPPRMYKDVFESLINYGYRPE 245
Query: 239 RIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
IY+TLER M+CG+GKCGHC VGTS S KY+C+DGPVF+Y+D +ST G++
Sbjct: 246 NIYVTLERMMKCGIGKCGHCNVGTSTSWKYVCKDGPVFTYFDIVSTPGML 295
>sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|96706|pir||B38453
anaerobic sulfite reduction protein B - Salmonella
typhimurium >gi|153883|gb|AAA99276.1| (M57706) anaerobic
sulfite reductase [Salmonella typhimurium]
Length = 272
Score = 142 bits (355), Expect = 4e-33
Identities = 93/273 (34%), Positives = 146/273 (53%), Gaps = 32/273 (11%)
Query: 10 RIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTRKPIQ 69
RI+ + TP E F V F GQFV V + GE PIS+ S I
Sbjct: 20 RILSITRHTPLEWNF-------RVAVDFPAHWGQFVEVSLPRVGEAPISV-SDYGDGWID 71
Query: 70 LCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAPLRSVLWY 129
L IR VG++T + EGD + +RG YGNG+P++ + L++VAGG G+AP++ ++ Y
Sbjct: 72 LLIRNVGKVTSALFTLKEGDNVWLRGCYGNGYPVDTLRHKPLLVVAGGTGVAPVKGLMRY 131
Query: 130 AIDSGK-FEKIYLYYGTKSYEDILFRDEII-YLLKHGEKLNCHVKLAYEVETPSCVYLEK 187
+++ + ++ + G K+ + +L+++E+ + KH L L++
Sbjct: 132 FVENPQEIGQLDMILGYKNRDCVLYKEEMATWRGKHNLVLT----------------LDE 175
Query: 188 GFSEKVCK-GLVTDLFRGEHF-DVENSYALICGPPVMYKFVIKELLDKGLSPGRIYMTLE 245
G ++ + G VTD D++ A++ GPP+M F +K LL KGL P +I++ E
Sbjct: 176 GEADDRYQIGRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVKMLLQKGLKPEQIWVDYE 235
Query: 246 RRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSY 278
RRM C VGKCGHC +G Y+C DGP+F+Y
Sbjct: 236 RRMACSVGKCGHCRMGE----VYVCTDGPIFNY 264
>emb|CAC11195.1| (AL445063) anaerobic sulfite reduction protein B related protein
[Thermoplasma acidophilum]
Length = 244
Score = 136 bits (338), Expect = 4e-31
Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 23/242 (9%)
Query: 42 GQFVIVDIRGHGEFPISLCSSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGF 101
GQF +V + G GE PIS+ S P+ I+ VG +TR I + + IG+RGPYGN +
Sbjct: 20 GQFYMVSVDGVGESPISVASG-YGNPLTFSIKAVGSVTRYIMDHRDIE-IGLRGPYGNEW 77
Query: 102 PLEKMEGATLILVAGGLGMAPLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLL 161
P + + ++ +AGG+G+ P+++++ G + + + YG +S DI++++EI
Sbjct: 78 PWKGADH--IVAIAGGIGIPPIKALIEDMESEGNLDDLTVLYGARSPGDIVYKNEIEAWK 135
Query: 162 KHGEKLNCHVKLAYEVETPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPV 221
K KL ++ S G G+VT L G A + GPP+
Sbjct: 136 K---------KLDLQITVDSGDASWNGHV-----GVVTTLIPGVK-KFNGGRAFVIGPPI 180
Query: 222 MYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDA 281
M KF ++EL+ +G P IY++LERRM CG+G CGHC +G Y+C GP+F Y D
Sbjct: 181 MMKFSVQELIKQGFRPENIYLSLERRMECGIGVCGHCNLGQ----WYVCEAGPIFRYSDV 236
Query: 282 LS 283
++
Sbjct: 237 MN 238
>sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|2127836|pir||E64480 cytochrome-c3 hydrogenase gamma
chain homolog - Methanococcus jannaschii
>gi|1592091|gb|AAB99455.1| (U67585) cytochrome-c3
hydrogenase, gamma chain [Methanococcus jannaschii]
Length = 257
Score = 113 bits (280), Expect = 3e-24
Identities = 86/267 (32%), Positives = 135/267 (50%), Gaps = 42/267 (15%)
Query: 10 RIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTRKPIQ 69
RI E+ E +P K F V++ F FKPGQF ++ + G E P S +
Sbjct: 8 RIKEIIEESPTVKTFV-------VDKDFDFKPGQFAMLWLPGVDEKPFGFSSKNS----- 55
Query: 70 LCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAPLRSVLWY 129
+ RVG T+ +H+ EGD+IGVRGPYG F + G ++ VAGG+G AP+ + +
Sbjct: 56 FSVARVGEFTKKMHELKEGDIIGVRGPYGTYF---EPIGDKVLAVAGGIGAAPIITAVEE 112
Query: 130 AIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLEKGF 189
G +I G ++ E++LF D EK++ E+ T + KGF
Sbjct: 113 FSKQG--IEITTILGARTKEELLFLDRF-------EKVS-----RLEICTDDGSFGFKGF 158
Query: 190 SEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIYMTLERRMR 249
+ + K ++ + E FD+ + CGP +M K V+ E+ ++ P + +++ER M+
Sbjct: 159 TTEKMK----EVLKEEKFDL----IITCGPEIMMKKVV-EIANEYNIP--VQVSMERYMK 207
Query: 250 CGVGKCGHCIVGTSVSIKYICRDGPVF 276
CG+G CG C V +C+DGPVF
Sbjct: 208 CGIGICGQCCVDDEGLC--VCKDGPVF 232
>sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451852|pir||H69028 cytochrome-c3 hydrogenase, gamma
subunit - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622322|gb|AAB85701.1| (AE000889)
cytochrome-c3 hydrogenase, gamma subunit
[Methanobacterium thermoautotrophicum]
Length = 266
Score = 109 bits (270), Expect = 4e-23
Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 33/238 (13%)
Query: 40 KPGQFVIV-DIRGHGEFPISLCSSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYG 98
+PGQFV+V D R +SL P R I + IRRVG T +H SEGD++G+RGPYG
Sbjct: 36 RPGQFVMVWDFRDEKPMSVSLID-PVRSEIGISIRRVGEFTDRVHGLSEGDLLGIRGPYG 94
Query: 99 NGFPLEKMEGATLILVAGGLGMAPLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEII 158
GF ++ G ++LV GG+GMAPL ++ A G ++ ++ +++LF D +
Sbjct: 95 RGF---ELMGRDILLVGGGIGMAPLAALADEATARGM--RVDALVAARTADELLFLDRL- 148
Query: 159 YLLKHGEKLNCHVKLAYEVETPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICG 218
V ++ + SC + KGF+ + L+T + + A +CG
Sbjct: 149 --------EAAGVNISTCTDDGSCGF--KGFAH---ERLLT-------LEENHDMAAVCG 188
Query: 219 PPVMYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVF 276
P M F + +LD+ P + ++LER M+C VG CG C + + +C +GPVF
Sbjct: 189 PEPM-MFQVMRILDERDVPAQ--LSLERYMKCAVGICGQCCLDDTGF--RVCAEGPVF 241
>sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451842|pir||D75027 dihydroorotate dehydrogenase
electron transfer chain PAB1150 - Pyrococcus abyssi
(strain Orsay) >gi|5459172|emb|CAB50658.1| (AJ248288)
DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
[Pyrococcus abyssi]
Length = 247
Score = 107 bits (265), Expect = 2e-22
Identities = 76/244 (31%), Positives = 117/244 (47%), Gaps = 43/244 (17%)
Query: 34 EESFTFKPGQFVIVDIRGHGEFPISLCSSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGV 93
+E F PGQF+++ + G E P SL + +++VG T + K EGD + +
Sbjct: 23 DEKLDFIPGQFIMLWLPGINEKPFSLADKDL-----IVVKKVGPFTSKLFKLEEGDYVWI 77
Query: 94 RGPYGNGFPLEKMEGATLILVAGGLGMAPLRSVLWYAIDSGKFEKIYLYYGTKSYEDILF 153
RGPYGNGF + +EG + LVAGG+G+ P+ ++ Y G E+ L YG +S E++
Sbjct: 78 RGPYGNGF--KSVEG-KVALVAGGIGIPPIYALAKY----GNLEEKVLIYGARSKEELAT 130
Query: 154 RDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSY 213
D Y+ + V + KG TD+ + Y
Sbjct: 131 LDIENYVDE--------------------VVITTDDGSAGIKGFPTDVLARRKVEFSQVY 170
Query: 214 ALICGPPVMYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDG 273
A CGP VM V++ ++ R ++ ER M+CG+G CG C +G + +CRDG
Sbjct: 171 A--CGPEVMLAKVLEI-----MNYERTQISAERYMKCGIGICGSCALGPYL----VCRDG 219
Query: 274 PVFS 277
PVF+
Sbjct: 220 PVFT 223
>sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
Length = 247
Score = 103 bits (255), Expect = 2e-21
Identities = 77/251 (30%), Positives = 116/251 (45%), Gaps = 57/251 (22%)
Query: 34 EESFTFKPGQFVIVDIRGHGEFPISLCSSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGV 93
+E F PGQF++V + G E P SL + ++RVG T + EGD + +
Sbjct: 23 DEKLDFTPGQFIMVWLPGVNEKPFSLADKDL-----IVVKRVGPFTSKLFTLEEGDYLWI 77
Query: 94 RGPYGNGFPLEKMEGATLILVAGGLGMAPLRSVLWYAI-DSGKFEKIYLYYGTKSYEDIL 152
RGPYGNGF K + LVAGG+G+ P+ YA+ GK E+ L YG + +++
Sbjct: 78 RGPYGNGF---KEVKGKVALVAGGIGIPPI-----YALAKHGKLEEKVLIYGARGKDELA 129
Query: 153 ------FRDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLEKGFSEKVCKGLVTDLFRGEH 206
+ DEI+ G +Y + KG TD+
Sbjct: 130 LLDIENYVDEIVITTDDG---------SYGI-----------------KGFPTDVLAKRK 163
Query: 207 FDVENSYALICGPPVMYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSI 266
+ YA CGP +M V++ ++ R ++ ER M+CG+G CG C +G +
Sbjct: 164 EEFSQVYA--CGPEIMLAKVLEI-----MNYERTQISAERYMKCGIGICGSCALGPYL-- 214
Query: 267 KYICRDGPVFS 277
+CRDGPVF+
Sbjct: 215 --VCRDGPVFT 223
>gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglobus fulgidus]
>gi|9297031|sp|O29722|PYRK_ARCFU PROBABLE DIHYDROOROTATE
DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451846|pir||H69315 cytochrome-c3 hydrogenase,
subunit gamma homolog - Archaeoglobus fulgidus
>gi|2650096|gb|AAB90709.1| (AE001068) cytochrome-c3
hydrogenase, subunit gamma [Archaeoglobus fulgidus]
Length = 232
Score = 94.4 bits (231), Expect = 1e-18
Identities = 76/271 (28%), Positives = 126/271 (46%), Gaps = 46/271 (16%)
Query: 7 YDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTRK 66
Y RI ++ LT +++ +L F S PGQFV+V + G E P+SL SS +
Sbjct: 2 YYTRITQIERLT--DEVATLYF-----SISLRSYPGQFVMVYVPGCEEIPLSLSSSNS-- 52
Query: 67 PIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAPLRSV 126
+ ++ VG T + EG +GVRG +G+ F K ++VAGG+G+AP++ +
Sbjct: 53 ---VTVKAVGETTASLINAKEGQYVGVRGAFGSAFTPSKRA----LIVAGGIGIAPMKYL 105
Query: 127 LWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLE 186
Y + G K+ + YG ++ +++ + D+ + E +
Sbjct: 106 YEYLMKCGS--KVSVVYGERTAKNLFWLDKFDRITVTTE--------------------D 143
Query: 187 KGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIYMTLER 246
F KG V D + E D E +CG M + L ++ + + +LER
Sbjct: 144 GSFG---LKGTVLDALKLEKLD-EYEKIYVCGSEGMLRATYDFLKERD-ALDKAEFSLER 198
Query: 247 RMRCGVGKCGHCIVGTSVSIKYICRDGPVFS 277
MRCG+G CG C++ + +C DGPVF+
Sbjct: 199 YMRCGIGVCGSCVIENGLR---VCADGPVFN 226
>sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|98369|pir||G39845 dihydroorotate dehydrogenase
(electron transfer subunit) pyrDII - Bacillus subtilis
>gi|143391|gb|AAA21271.1| (M59757) unknown [Bacillus
subtilis] >gi|2633926|emb|CAB13427.1| (Z99112)
dihydroorotate dehydrogenase (electron transfer subunit)
[Bacillus subtilis]
Length = 256
Score = 92.8 bits (227), Expect = 4e-18
Identities = 79/257 (30%), Positives = 120/257 (45%), Gaps = 39/257 (15%)
Query: 29 LDPEVEESFTFKPGQFVIVDIRGHG----EFPISLCSSPTRKPIQLCIRRV-GRLTRLIH 83
L E+ + FT PGQF+ + + PIS+ K I RV G TRL+
Sbjct: 23 LKGELVQGFT-TPGQFLHLKVSEAVTPLLRRPISIADVNFEKNEVTIIYRVDGEGTRLLS 81
Query: 84 KFSEGDVIGVRGPYGNGFPLEKME-GATLILVAGGLGMAPLRSVLWYAIDSGKFEKIYLY 142
+G+++ V GP GNGFP+ +++ G T +LV GG+G+ PL+ + I+ G +
Sbjct: 82 LKQQGELVDVLGPLGNGFPVNEVQPGKTALLVGGGVGVPPLQELSKRLIEKG--VNVIHV 139
Query: 143 YGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLEKGFSEKVCKGLVTDLF 202
G +S +D+ + +E C V T Y E GF VTD+
Sbjct: 140 LGFQSAKDVFYEEE------------CRQYGDTYVATADGSYGETGF--------VTDVI 179
Query: 203 RGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCIVGT 262
+ + +E L CGP M K + +E K +Y+++E RM CG+G C C+ T
Sbjct: 180 KRK--KLEFDILLSCGPTPMLKALKQEYAHK-----EVYLSMEERMGCGIGACFACVCHT 232
Query: 263 S---VSIKYICRDGPVF 276
+ S +C DGPVF
Sbjct: 233 NESETSYVKVCLDGPVF 249
>pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii
>gi|3258409|dbj|BAA31092.1| (AP000007) 213aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 213
Score = 88.9 bits (217), Expect = 6e-17
Identities = 71/239 (29%), Positives = 108/239 (44%), Gaps = 57/239 (23%)
Query: 46 IVDIRGHGEFPISLCSSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEK 105
+V + G E P SL + ++RVG T + EGD + +RGPYGNGF K
Sbjct: 1 MVWLPGVNEKPFSLADKDL-----IVVKRVGPFTSKLFTLEEGDYLWIRGPYGNGF---K 52
Query: 106 MEGATLILVAGGLGMAPLRSVLWYAI-DSGKFEKIYLYYGTKSYEDIL------FRDEII 158
+ LVAGG+G+ P+ YA+ GK E+ L YG + +++ + DEI+
Sbjct: 53 EVKGKVALVAGGIGIPPI-----YALAKHGKLEEKVLIYGARGKDELALLDIENYVDEIV 107
Query: 159 YLLKHGEKLNCHVKLAYEVETPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICG 218
G +Y + KG TD+ + YA CG
Sbjct: 108 ITTDDG---------SYGI-----------------KGFPTDVLAKRKEEFSQVYA--CG 139
Query: 219 PPVMYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFS 277
P +M V++ ++ R ++ ER M+CG+G CG C +G + +CRDGPVF+
Sbjct: 140 PEIMLAKVLEI-----MNYERTQISAERYMKCGIGICGSCALGPYL----VCRDGPVFT 189
>dbj|BAA12238.1| (D84146) reductase [Pseudomonas aeruginosa]
Length = 328
Score = 88.2 bits (215), Expect = 1e-16
Identities = 64/239 (26%), Positives = 108/239 (44%), Gaps = 15/239 (6%)
Query: 6 SYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTR 65
++ ARII+ + ++ + + + F F PGQ+ ++ P S+ P
Sbjct: 93 THPARIIKGMVVAVESPTHDIRRIRIRLAKPFEFSPGQYAMLQFSPEHVRPYSMAGLPDD 152
Query: 66 KPIQLCIRRV--GRLTRLIHKF-SEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
+ ++ IR+V GR+T I + EG I + GP G + L + ++ V GG G+AP
Sbjct: 153 QEMEFHIRKVPGGRVTEYIFEHVREGTSIKLSGPLGTAY-LRQAHTGPMLCVGGGTGLAP 211
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
+ S++ A+ SG I+LY+G +S +D+ D + L +L H +A
Sbjct: 212 VLSIVRGALKSGMTNPIHLYFGVRSQQDLYDADRLNQLAAIHPQLTVHTVIA-------- 263
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
+E GL+TDL + + A +CG P M + D G+SP IY
Sbjct: 264 ---TGPINEGQRAGLITDLIEKDIPSLAGWRAYLCGAPAMVDALCTVAKDLGISPEHIY 319
>sp|Q52126|NDOR_PSEPU NAPHTHALENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN--NAD(+) REDUCTASE
COMPONENT >gi|484404|pir||JN0642 naphthalene
1,2-dioxygenase (EC 1.14.12.12) reductase component -
Pseudomonas putida (strain NCIB9816-4)
>gi|151390|gb|AAA25904.1| (M83950) reductase
[Pseudomonas putida]
Length = 328
Score = 86.2 bits (210), Expect = 4e-16
Identities = 62/239 (25%), Positives = 107/239 (43%), Gaps = 15/239 (6%)
Query: 6 SYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTR 65
++ ARII+ + ++ L + + F F PGQ+ + P S+ P
Sbjct: 93 THPARIIKGTVVAVESPTHDIRRLRVRLSKPFEFSPGQYATLQFSPEHARPYSMAGLPDD 152
Query: 66 KPIQLCIRRV--GRLTRLIHKF-SEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
+ ++ IR+V GR+T + + EG I + GP G + +K G ++ V GG G+AP
Sbjct: 153 QEMEFHIRKVPGGRVTEYVFEHVREGTSIKLSGPLGTAYLRQKHTGP-MLCVGGGTGLAP 211
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
+ S++ A+ SG I LY+G +S +D+ + + L +L H +A
Sbjct: 212 VLSIVRGALKSGMTNPILLYFGVRSQQDLYDAERLHKLAADHPQLTVHTVIA-------- 263
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
+E GL+TD+ + + A +CG P M + + G+SP IY
Sbjct: 264 ---TGPINEGQRAGLITDVIEKDILSLAGWRAYLCGAPAMVEALCTVTKHLGISPEHIY 319
>gb|AAB62705.1| (AF010471) naphthalene-1,2-dioxygenase reductase component
[Pseudomonas putida]
Length = 328
Score = 86.2 bits (210), Expect = 4e-16
Identities = 62/239 (25%), Positives = 107/239 (43%), Gaps = 15/239 (6%)
Query: 6 SYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTR 65
++ ARII+ + ++ L + + F F PGQ+ + P S+ P
Sbjct: 93 THPARIIKGTVVAVESPTHDIRRLRVRLSKPFEFSPGQYATLQFSPEHARPYSMAGLPDD 152
Query: 66 KPIQLCIRRV--GRLTRLIHKF-SEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
+ ++ IR+V GR+T + + EG I + GP G + +K G ++ V GG G+AP
Sbjct: 153 QEMEFHIRKVPGGRVTEYVFEHVREGTSIKLSGPLGTAYLRQKHTGP-MLCVGGGTGLAP 211
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
+ S++ A+ SG I LY+G +S +D+ + + L +L H +A
Sbjct: 212 VLSIVRGALKSGMTNPILLYFGVRSQQDLYDAERLHKLAADHPQLTVHTVIA-------- 263
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
+E GL+TD+ + + A +CG P M + + G+SP IY
Sbjct: 264 ---TGPINEGQRAGLITDVIEKDILSLAGWRAYLCGAPAMVEALCTVTKHLGISPEHIY 319
>gb|AAD02134.1| (AF039533) naphthalene dioxygenase reductase [Pseudomonas stutzeri]
Length = 328
Score = 83.9 bits (204), Expect = 2e-15
Identities = 63/239 (26%), Positives = 106/239 (43%), Gaps = 15/239 (6%)
Query: 6 SYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTR 65
++ ARII+ + ++ + + + F F PGQ+ + P S+ P
Sbjct: 93 THPARIIKGMVVAVESPTHDIRRIRIRLAKPFEFSPGQYATLQFSPEHVRPYSMAGLPDD 152
Query: 66 KPIQLCIRRV--GRLTRLIHKF-SEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
+ ++ IR+V GR+T I + EG I + GP G + L + ++ V GG G+AP
Sbjct: 153 QEMEFHIRKVPGGRVTEYIFEHVREGTSIKLSGPLGTAY-LRQAHTGPMLCVGGGTGLAP 211
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
+ S++ A+ SG I+LY+G +S +D+ D + L +L H +A
Sbjct: 212 VLSIVRGALKSGMTNPIHLYFGVRSQQDLYDADRLNQLAAIHPQLTVHTVIA-------- 263
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
+E GL+TDL + + A +CG P M + G+SP IY
Sbjct: 264 ---TGPINEGQRAGLITDLIEKDIPSLAGWRAYLCGAPAMVDALCTVAKVLGISPEHIY 319
>pir||JN0640 naphthalene 1,2-dioxygenase (EC 1.14.12.12) reductase component -
Pseudomonas putida (strain G7) >gi|151385|gb|AAA25900.1|
(M83949) reductase [Pseudomonas putida]
Length = 328
Score = 83.1 bits (202), Expect = 4e-15
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 15/239 (6%)
Query: 6 SYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTR 65
++ ARII+ + ++ L + + F F PGQ+ + P S+ P
Sbjct: 93 THPARIIKGTVVAVESPTHDIRRLRVRLAKPFEFSPGQYATLQFSPEHARPYSMAGLPDD 152
Query: 66 KPIQLCIRRV--GRLTRLIHKF-SEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
+ ++ IR+V GR+T + + EG I + GP G + L + ++ V GG G+AP
Sbjct: 153 QEMEFHIRKVPGGRVTEYVFEHVREGTSIKLSGPLGTAY-LRQNHTGPMLCVGGGTGLAP 211
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
+ S++ A+ G I LY+G +S +D+ + + L +L H +A
Sbjct: 212 VLSIVRGALKLGMTNPILLYFGVRSQQDLYDAERLHKLAADHPQLTVHTVIAM------- 264
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
+E GLVTD+ + + A +CG P M + + G+SP IY
Sbjct: 265 ----GPINESQRAGLVTDVIEKDIISLAGWRAYLCGAPAMVEALCTVTKHLGISPEHIY 319
>pir||A55217 naphthalene 1,2-dioxygenase (EC 1.14.12.12) reductase component -
Pseudomonas putida (strain OUS82)
>gi|391842|dbj|BAA20389.1| (AB004059) reductase
[Pseudomonas putida]
Length = 328
Score = 81.5 bits (198), Expect = 1e-14
Identities = 61/239 (25%), Positives = 104/239 (42%), Gaps = 15/239 (6%)
Query: 6 SYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTR 65
++ ARII+ + ++ L + + F F PGQ+ + P S+ P
Sbjct: 93 THPARIIKGTVVAIESPTHDIRRLRVRLAKPFEFSPGQYATLQFSPEHARPYSMAGLPDD 152
Query: 66 KPIQLCIRRV--GRLTRLIHKF-SEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
+ ++ IR+V GR+T + + EG I + GP G + L + ++ V GG G+AP
Sbjct: 153 QEMEFHIRKVPGGRVTEYVFEHVREGTSIKLSGPLGTAY-LRQNHTGPMLCVGGGTGLAP 211
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
+ S++ A+ G I LY+G +S +D+ + + L +L H +A
Sbjct: 212 VLSIIRGALKLGMTNPILLYFGVRSQQDLYDAERLHNLAADHPQLTVHTVIAM------- 264
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
+E GLVTD + + A +CG P M + + G+SP IY
Sbjct: 265 ----GPINESQRAGLVTDAIEKDISSLAGWRAYLCGAPAMVEALCTVTKHLGISPEHIY 319
>pir||S47292 phenol 2-monooxygenase (EC 1.14.13.7) chain mopP - Acinetobacter
calcoaceticus >gi|2120861|pir||S70085 phenolhydroxylase
component 6 - Acinetobacter calcoaceticus
>gi|535285|emb|CAA85385.1| (Z36909) phenolhydroxylase
component [Acinetobacter calcoaceticus]
Length = 350
Score = 80.0 bits (194), Expect = 3e-14
Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 21/263 (7%)
Query: 5 QSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRG-HGEFPISLCSSP 63
Q Y A++IE+ +L+P ++K + +++ F+ GQ++ + + G S+ ++P
Sbjct: 103 QDYQAKVIEITDLSP-----TIKGVRLQLDRPMQFQAGQYINIQLPNIEGTRAFSIANTP 157
Query: 64 TRKP-IQLCIRRV--GRLTRLIH-KFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLG 119
+ K I+L IR+V G TR +H + S G+ + + GPYG F + K + +I +AGG G
Sbjct: 158 SDKNLIELHIRKVQGGAATRYVHDELSVGEEMALSGPYGQFF-VRKSDQQNVIFIAGGSG 216
Query: 120 MAPLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVET 179
++ L+S++ ++ G IYL+ G + ++ R++ L+K E N A
Sbjct: 217 LSSLQSMILDLLEHGDTRIIYLFQGARDVAELYNREKFEQLVK--EYPNFRYIPALNAPK 274
Query: 180 PSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGR 239
P + GF+ V + V + F + A +CGPP M I L+ L
Sbjct: 275 PEDQW--TGFTGYVHEA-VANYFENK---CSGHKAYLCGPPPMIDAAISTLMQSRLFEKD 328
Query: 240 IYMTLERRMRCGVGKCGHCIVGT 262
I+ ER + G G GT
Sbjct: 329 IH--TERFLSAADGANGQSRFGT 349
>sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451851|pir||G72230 hypothetical protein TM1639 -
Thermotoga maritima (strain MSB8)
>gi|4982212|gb|AAD36706.1|AE001806_16 (AE001806)
electron transfer protein, putative [Thermotoga
maritima]
Length = 282
Score = 80.0 bits (194), Expect = 3e-14
Identities = 80/283 (28%), Positives = 121/283 (42%), Gaps = 44/283 (15%)
Query: 14 VRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGE-FPISLCSS-PTRKPIQLC 71
V+++ E +F P V + +PGQFV++ + GE P+++ + P ++
Sbjct: 10 VKKVKIAEDVFDFWIHSPSVSKEA--RPGQFVVIRLHEKGERIPLTVADTKPEEGLFRMV 67
Query: 72 IRRVGRLTRLIHKFSEGD-VIGVRGPYGNGFPLEKMEGATLILVAGGLGMAPLRSVLWYA 130
++ VG+ T + EGD ++ V GP GN P E ++LV GG+G+A L +
Sbjct: 68 VKVVGKTTHELSLKKEGDTILDVVGPLGN--PSEIENYGNVLLVGGGVGIATLYPIAKAL 125
Query: 131 IDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLEKGFS 190
++G L TK Y + + E + S V L
Sbjct: 126 KEAGNNITTVLGARTKDY----------------------LIMVDEFKEISDVLLVTDDG 163
Query: 191 EKVCKGLVTD----LFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIYMTLER 246
KG+VTD LFR FD+ GP +M KF + + G+ I+++L
Sbjct: 164 SAGMKGVVTDAMDKLFRERKFDI----CWAVGPTIMMKFCTLKAREFGVP---IWVSLNP 216
Query: 247 RMRCGVGKCGHCIVGTSVSIKYICRDGPVFS----YWDALSTR 285
M G G CG C V S IK+ C DGP F WD L R
Sbjct: 217 IMVDGTGMCGACRVTVSGQIKFACVDGPEFRGEEVDWDELLKR 259
>pir||F75069 hydrogenase, chain gamma related protein PAB1737 - Pyrococcus
abyssi (strain Orsay) >gi|5458371|emb|CAB49859.1|
(AJ248286) hydrogenase, subunit gamma related protein
[Pyrococcus abyssi]
Length = 278
Score = 79.2 bits (192), Expect = 5e-14
Identities = 80/288 (27%), Positives = 125/288 (42%), Gaps = 46/288 (15%)
Query: 10 RIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGE-FPISLCSSPTRK-P 67
+I+ L P LF ++ P + + KPGQFVI+ + GE P+++ K
Sbjct: 3 KILHKERLAPGINLFEVEA--PRIAKHA--KPGQFVIIRLHERGERIPLTIADFDRDKGS 58
Query: 68 IQLCIRRVGRLTRLIHKFSEGDVI-GVRGPYGNGFPLEKMEGATLILVAGGLGMAPLRSV 126
I + + VG+ T+ + + EGD I + GP GN ++K T+++V GG+G+A + V
Sbjct: 59 ITIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKF--GTVVMVGGGVGVAEIYPV 116
Query: 127 LWYAIDSGKFEKIYLYYGTKS---YEDILFR--DEIIYLLKHGEKLNCHVKLAYEVETPS 181
+ G + L + TK +ED L + DE+I G
Sbjct: 117 ARAMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGS---------------- 160
Query: 182 CVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
Y KGF+ + L+ + G D+ ++ GP +M K V + G+ +
Sbjct: 161 --YGMKGFTTHALQKLIDE---GRKIDLVHAV----GPAIMMKAVAELTKPYGI---KTV 208
Query: 242 MTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSY----WDALSTR 285
+L M G G CG C V IK+ C DGP F WD L R
Sbjct: 209 ASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMKR 256
>pir||JC5350 2-nitrotoluene reductase (EC 1.-.-.-) - Pseudomonas sp
>gi|1773274|gb|AAB40380.1| (U49504) reductase 2NT
[Pseudomonas sp.]
Length = 328
Score = 76.5 bits (185), Expect = 4e-13
Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 15/238 (6%)
Query: 7 YDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTRK 66
+ ARI++ E ++ L ++ + F PGQ+ V P S+ P+
Sbjct: 94 HPARIVKGTVTAIDEATHDIRRLRIKLAKPLEFSPGQYATVQFTPECVRPYSMAGLPSDA 153
Query: 67 PIQLCIRRV--GRLTRLI-HKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAPL 123
++ IR V G ++ + ++ S G + + GP G + L + ++ V GG G+AP+
Sbjct: 154 EMEFQIRAVPGGHVSNYVFNELSVGASVRISGPLGTAY-LRRTHTGPMLCVGGGTGLAPV 212
Query: 124 RSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSCV 183
S++ A++SG I+LY+G +S +DI + + L L +V +A P
Sbjct: 213 LSIVRGALESGMSNPIHLYFGVRSEQDIYDEERLHALAARFPNLKVNVVVATGPAGPG-- 270
Query: 184 YLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
GLVTDL + ++ A +CG P M + + + G+ PG I+
Sbjct: 271 ---------HRSGLVTDLIGRDLPNLAGWRAYLCGAPAMVEALNLLVARLGIVPGHIH 319
>gb|AAD12606.1| (AF036940) ferredoxin reductase [Ralstonia sp. U2]
Length = 328
Score = 76.5 bits (185), Expect = 4e-13
Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 15/238 (6%)
Query: 7 YDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTRK 66
+ ARI++ E ++ L ++ + F PGQ+ V P S+ P+
Sbjct: 94 HPARIVKGTVTAIDEATHDIRRLRIKLAKPLEFSPGQYATVQFTPECVRPYSMAGLPSDA 153
Query: 67 PIQLCIRRV--GRLTRLI-HKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAPL 123
++ IR V G ++ + ++ S G + + GP G + L + ++ V GG G+AP+
Sbjct: 154 EMEFQIRAVPGGHVSNYVFNELSVGASVRISGPLGTAY-LRRTHTGPMLCVGGGTGLAPV 212
Query: 124 RSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSCV 183
S++ A++SG I+LY+G +S +DI + + L L +V +A P
Sbjct: 213 LSIVRGALESGMSNPIHLYFGVRSEQDIYDEERLHALAARFPNLKVNVVVATGPAGPG-- 270
Query: 184 YLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
GLVTDL + ++ A +CG P M + + + G+ PG I+
Sbjct: 271 ---------RRSGLVTDLIGRDLPNLAGWRAYLCGAPAMVEALNLLVARLGIVPGHIH 319
>gb|AAC69483.1| (AF087482) o-halobenzoate dioxygenase reductase [Pseudomonas
aeruginosa]
Length = 328
Score = 76.5 bits (185), Expect = 4e-13
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 15/239 (6%)
Query: 6 SYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTR 65
++ ARII+ + + ++ + + + + PGQ+V + P S+ T
Sbjct: 93 NHPARIIKATVVAIEKATHDIRRVVLKPAKPLAYSPGQYVSLQFTPDHIRPYSMAGLHTD 152
Query: 66 KPIQLCIRRV--GRLTRLIHKFSE-GDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
++ +R V GR++ + + + GD + V GP G + K EG ++ +AGG G+AP
Sbjct: 153 DHLEFHVRVVPDGRVSGYVDQTLKIGDAVRVTGPLGTAYFAAKHEGP-MLCIAGGTGLAP 211
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
+ S++ A++SG I++Y+G +S D+ D + L L V +A
Sbjct: 212 VLSIVRGALESGMTNPIHVYFGVRSQTDVYCTDVLAQLQARYANLKVSVVVAVGAA---- 267
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
++ GLVTD + +E +CG P M + KG++P +Y
Sbjct: 268 -------ADGQRTGLVTDAVEADWPSLEGFRVYLCGSPPMVDAATLLVTRKGVAPEHVY 319
>dbj|BAA23335.1| (D85083) DMS oxygenase component [Acinetobacter sp.]
Length = 353
Score = 74.5 bits (180), Expect = 1e-12
Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 19/236 (8%)
Query: 5 QSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRG-HGEFPISLCSSP 63
Q Y A++IE+ +L+P ++K + +++ F+ GQ++ + + G S+ ++P
Sbjct: 103 QDYQAKVIEITDLSP-----TIKGVRLQLDRPMQFQAGQYINIQLPNIEGTRAFSIANTP 157
Query: 64 TRKP-IQLCIRRV--GRLTRLIH-KFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLG 119
+ I+L IR+V G TR +H + S G+ + + GPYG F + K + +I +AGG G
Sbjct: 158 SEANLIELHIRKVQGGAATRYVHDELSVGEEMALSGPYGQFF-VRKSDQQNVIFIAGGSG 216
Query: 120 MAPLRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVET 179
++ +S++ ++ G IYL+ G + ++ R++ L+K E N A
Sbjct: 217 LSSPQSMILDLLEQGDTRIIYLFQGARDVAELYNREKFEQLVK--EYPNFRYIPALNAPK 274
Query: 180 PSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGL 235
P + GF+ V + V + F + A +CGPP M I L+ L
Sbjct: 275 PEDQW--TGFTGYVHEA-VANYFENK---CSGHKAYLCGPPPMIDAAISTLMQSRL 324
>sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
Length = 262
Score = 71.4 bits (172), Expect = 1e-11
Identities = 73/261 (27%), Positives = 107/261 (40%), Gaps = 66/261 (25%)
Query: 41 PGQFVIVDIRGHGEF---PISLCSSPTRKPIQLCIRRVGRLTRLIHKFSE---GDVIGVR 94
PGQF+ + + PIS+ S R + R+G T +K S+ G + V
Sbjct: 36 PGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVM 95
Query: 95 GPYGNGFPLEKMEGA-TLILVAGGLGMAPLRSVLWYAIDSGKFEKIYLYYGTKSYEDILF 153
GP GNGFP+ ++ ++++ GG+G+ PL YE
Sbjct: 96 GPLGNGFPVAEVTSTDKILIIGGGIGVPPL------------------------YE---- 127
Query: 154 RDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLEKGFSE------KVC--------KGLVT 199
L K EK C + + + + LE FS K+ KG V
Sbjct: 128 ------LAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVG 181
Query: 200 DLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCI 259
L F+V+ Y CG P M K V K K R+Y+++E RM CG+G C C+
Sbjct: 182 MLMNEIDFEVDALYT--CGAPAMLKAVAK----KYDQLERLYISMESRMACGIGACYACV 235
Query: 260 ----VGTSVSIKYICRDGPVF 276
S ++K +C DGPVF
Sbjct: 236 EHDKEDESHALK-VCEDGPVF 255
>pir||C83332 toluate 1,2-dioxygenase electron transfer component PA2516
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9948570|gb|AAG05904.1|AE004678_10 (AE004678) toluate
1,2-dioxygenase electron transfer component [Pseudomonas
aeruginosa]
Length = 337
Score = 69.9 bits (168), Expect = 4e-11
Identities = 65/239 (27%), Positives = 108/239 (44%), Gaps = 21/239 (8%)
Query: 7 YDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCSSPTRK 66
Y+ARI EVR+L+P SL+ E S F PGQ+V + + G + SS +
Sbjct: 107 YEARISEVRQLSPSTIGLSLR---GEALASLAFLPGQYVNLQVPGSEQRRAYSFSSLAKD 163
Query: 67 -PIQLCIRRV--GRLTRLIHKFSE-GDVIGVRGPYGNGFPLEKMEGATLILVAGGLGMAP 122
+ IR V G ++ + + GD + + GP G+ F L ++ L+++AGG G+AP
Sbjct: 164 GEVSFLIRNVPGGLMSGFLSGTARAGDSLAMDGPLGS-FYLREIH-RPLLMLAGGTGLAP 221
Query: 123 LRSVLWYAIDSGKFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEVETPSC 182
++L + G ++L YG D++ E+L + +C
Sbjct: 222 FTAMLERIAEQGSAHPLHLVYGVTHDVDLVGL----------ERLEAFAERIPGFTWSAC 271
Query: 183 VYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
V S+ KG VT+ +H + +CGPP M + V + L ++G+ P Y
Sbjct: 272 V--ASADSDYPRKGYVTEHIAAQHLHEGDVDIYLCGPPPMVEAVERYLREQGVRPANFY 328
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.145 0.450
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118680827
Number of Sequences: 2977
Number of extensions: 5321563
Number of successful extensions: 9848
Number of sequences better than 1.0e-10: 31
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9766
Number of HSP's gapped (non-prelim): 32
length of query: 288
length of database: 189,106,746
effective HSP length: 49
effective length of query: 239
effective length of database: 159,780,883
effective search space: 38187631037
effective search space used: 38187631037
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 165 (68.7 bits)