BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0640 (hydD-2) DE:HYDROGENASE (EC 1.12.2.1) (CYTOCHROME-C3
HYDROGENASE DELTA CHAIN)
         (241 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75070 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain ...   501  e-141
gb|AAF61853.1|AF176650_3 (AF176650) sulfhydrogenase II subunit d...   392  e-108
pir||S48835 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain ...   183  2e-45
pir||A71075 probable cytochrome-c3 hydrogenase delta chain - Pyr...   182  3e-45
pir||C75133 cytochrome-c3 hydrogenase delta chain PAB1786 - Pyro...   182  5e-45
gb|AAB94935.1| (AF039208) NiFe hydrogenase delta subunit [Thermo...   164  7e-40
pir||F64448 methylviologen-reducing hydrogenase gamma chain homo...   111  1e-23
pir||S24800 methylviologen-reducing hydrogenase chain vhuG - Met...   106  3e-22
pir||C59304 methylviologen-reducing hydrogenase gamma chain homo...   106  4e-22
gi|11498969 methylviologen-reducing hydrogenase, subunit gamma (...   100  3e-20
sp|P22319|HOXY_ALCEU NAD-REDUCING HYDROGENASE HOXS DELTA SUBUNIT...    78  1e-13
sp|Q60340|FRHG_METJA COENZYME F420 HYDROGENASE GAMMA SUBUNIT (8-...    78  1e-13
emb|CAA56463.1| (X80180) hydrogenase small beta subunit [Acetomi...    77  2e-13
gb|AAB57891.1| (U70364) NAD-reducing hydrogenase delta subunit [...    77  2e-13
pir||S16726 methylviologen-reducing hydrogenase chain vhcG - Met...    75  1e-12
pir||S32834 methylviologen-reducing hydrogenase chain vhcG [simi...    72  7e-12
pir||S24797 coenzyme F420-reducing hydrogenase chain furG [simil...    70  3e-11
pir||I39733 hydrogenase small chain - Anabaena variabilis >gi|10...    69  5e-11

>pir||A75070 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain PAB0640 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458374|emb|CAB49862.1| (AJ248286) HYDROGENASE (EC
           1.12.2.1) (CYTOCHROME-C3 HYDROGENASE DELTA CHAIN)
           [Pyrococcus abyssi]
           Length = 241
           
 Score =  501 bits (1275), Expect = e-141
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MDKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGS 60
           MDKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGS
Sbjct: 1   MDKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGS 60

Query: 61  VSTQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEP 120
           VSTQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEP
Sbjct: 61  VSTQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEP 120

Query: 121 RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRG 180
           RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRG
Sbjct: 121 RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRG 180

Query: 181 VPCLGPVTLGGCNAKCPSIGLGCIGCRGLVPDPNIPGLVEVLKNIIPEEDIVRKLKTFVR 240
           VPCLGPVTLGGCNAKCPSIGLGCIGCRGLVPDPNIPGLVEVLKNIIPEEDIVRKLKTFVR
Sbjct: 181 VPCLGPVTLGGCNAKCPSIGLGCIGCRGLVPDPNIPGLVEVLKNIIPEEDIVRKLKTFVR 240

Query: 241 W 241
           W
Sbjct: 241 W 241


>gb|AAF61853.1|AF176650_3 (AF176650) sulfhydrogenase II subunit d [Pyrococcus furiosus]
           Length = 237
           
 Score =  392 bits (996), Expect = e-108
 Identities = 179/238 (75%), Positives = 211/238 (88%), Gaps = 1/238 (0%)

Query: 4   LKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSVST 63
           +KLGVFELT CGGCALN+LFLY++L D+LEFY+IAEFHMATS++ REK+DVALVTG+VST
Sbjct: 1   MKLGVFELTDCGGCALNLLFLYDKLLDLLEFYEIAEFHMATSKKSREKIDVALVTGTVST 60

Query: 64  QRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEPRAV 123
           QRDLEV++DARNR+EYLIALGTCATHG VQG IE S KE  R++YG+ K P K+L P+ V
Sbjct: 61  QRDLEVLRDARNRSEYLIALGTCATHGSVQGVIENS-KEAYRRVYGNGKPPVKLLNPKPV 119

Query: 124 VEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRGVPC 183
            ++VPVDFAIPGCPYDK+EVFQVL+DIA+G+EPV KDYPVCLECKLNEYECVLLK+ +PC
Sbjct: 120 TDYVPVDFAIPGCPYDKEEVFQVLIDIAKGIEPVAKDYPVCLECKLNEYECVLLKKRIPC 179

Query: 184 LGPVTLGGCNAKCPSIGLGCIGCRGLVPDPNIPGLVEVLKNIIPEEDIVRKLKTFVRW 241
           LGPVT GGCNAKCPS GLGCIGCRG   D N+PG+ EVLK I+P+E+I RKL+TF RW
Sbjct: 180 LGPVTAGGCNAKCPSYGLGCIGCRGPSLDNNVPGMFEVLKEILPDEEIARKLRTFARW 237


>pir||S48835 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain - Pyrococcus
           furiosus >gi|562776|emb|CAA53036.1| (X75255) hydrogenase
           (delta subunit) [Pyrococcus furiosus]
           Length = 261
           
 Score =  183 bits (460), Expect = 2e-45
 Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 3/241 (1%)

Query: 1   MDKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGS 60
           M K+++G + LTSC GC L +  + E L  I     +  F +       EK+D+A + GS
Sbjct: 1   MGKVRIGFYALTSCYGCQLQLAMMDELLQLIPNAEIVCWFMIDRDSIEDEKVDIAFIEGS 60

Query: 61  VSTQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEP 120
           VST+ ++E+VK  R  A+ ++A+G CA  GGVQ   E  ++E  +K+YGD K   +  + 
Sbjct: 61  VSTEEEVELVKKIRENAKIVVAVGACAVQGGVQSWSEKPLEELWKKVYGDAKVKFQPKKA 120

Query: 121 RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRG 180
             V +++ VD+ I GCP +K +    L     G  P   DYPVCLEC+LN + C+LL++G
Sbjct: 121 EPVSKYIKVDYNIYGCPPEKKDFLYALGTFLIGSWPEDIDYPVCLECRLNGHPCILLEKG 180

Query: 181 VPCLGPVTLGGCNAKCPSIGLGCIGCRGLV--PDPNIPGLVEVLKNI-IPEEDIVRKLKT 237
            PCLGPVT  GCNA+CP  G+ CIGCRG +         L +V K   + +E+I+ ++K 
Sbjct: 181 EPCLGPVTRAGCNARCPGFGVACIGCRGAIGYDVAWFDSLAKVFKEKGMTKEEIIERMKM 240

Query: 238 F 238
           F
Sbjct: 241 F 241


>pir||A71075 probable cytochrome-c3 hydrogenase delta chain - Pyrococcus
           horikoshii >gi|3257712|dbj|BAA30395.1| (AP000005) 266aa
           long hypothetical cytochrome-c3 hydrogenase delta chain
           [Pyrococcus horikoshii]
           Length = 266
           
 Score =  182 bits (458), Expect = 3e-45
 Identities = 93/239 (38%), Positives = 138/239 (56%), Gaps = 3/239 (1%)

Query: 3   KLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSVS 62
           K+++G + LTSC GC L +  + E L  +     +  + +       E +D+A + GSVS
Sbjct: 8   KIRIGFYALTSCYGCQLQLAMMDELLLLLPHIELVCWYMVDRDSIDDEPVDIAFIEGSVS 67

Query: 63  TQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEPRA 122
           T+ ++E+VK  R  ++ ++A+G CA  GGVQ   + S++E  R +YGD K   K  +   
Sbjct: 68  TEEEVELVKKIRENSKIVVAVGACAVQGGVQSWTDKSLEELWRTVYGDAKVKFKPKKAEP 127

Query: 123 VVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRGVP 182
           V +++ VD+ I GCP +K +    L     G  P   DYPVCLEC+LN Y CVLL++G P
Sbjct: 128 VSKYIKVDYNIYGCPPEKRDFLYALGTFLIGSWPEDIDYPVCLECRLNGYPCVLLEKGEP 187

Query: 183 CLGPVTLGGCNAKCPSIGLGCIGCRGLV--PDPNIPGLVEVLKNI-IPEEDIVRKLKTF 238
           CLGPVT  GCNA+CP  G+ CIGCRG +         L  V K   + +E+I+ ++K F
Sbjct: 188 CLGPVTRAGCNARCPGFGIACIGCRGAIGYDVAWFDSLARVFKEKGLTKEEIIERMKIF 246


>pir||C75133 cytochrome-c3 hydrogenase delta chain PAB1786 - Pyrococcus abyssi
           (strain Orsay) >gi|5458291|emb|CAB49780.1| (AJ248285)
           CYTOCHROME-C3 HYDROGENASE DELTA CHAIN [Pyrococcus
           abyssi]
           Length = 261
           
 Score =  182 bits (456), Expect = 5e-45
 Identities = 95/242 (39%), Positives = 143/242 (58%), Gaps = 5/242 (2%)

Query: 1   MDKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREK-LDVALVTG 59
           M KL++G + LTSC GC L +  + E L  ++   +I  ++M       +K +D+A + G
Sbjct: 1   MGKLRIGFYALTSCYGCQLQLAMMDE-LLKLIPNAEIVCWYMLDRDSVEDKPVDIAFIEG 59

Query: 60  SVSTQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLE 119
           SVST+ ++E+VK  R  A+ ++A+G CA  GGVQ   + S++E  + +YGD K   +  +
Sbjct: 60  SVSTEEEVELVKKIRENAKIVVAVGACAVQGGVQSWTDKSLEELWKTVYGDAKVKFQPKK 119

Query: 120 PRAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKR 179
              V +++ VD+ I GCP +K +    L     G  P   DYPVCLEC+LN Y CVLL++
Sbjct: 120 AEPVSKYIKVDYNIYGCPPEKRDFLYALGTFLIGSWPEDIDYPVCLECRLNGYPCVLLEK 179

Query: 180 GVPCLGPVTLGGCNAKCPSIGLGCIGCRGLV--PDPNIPGLVEVLKNI-IPEEDIVRKLK 236
           G PCLGP+T  GCNA+CP  G+ CIGCRG +         L  V K   + +E+I+ ++K
Sbjct: 180 GEPCLGPITRAGCNARCPGFGIACIGCRGAIGYDVAWFDSLARVFKEKGLTKEEILERMK 239

Query: 237 TF 238
            F
Sbjct: 240 IF 241


>gb|AAB94935.1| (AF039208) NiFe hydrogenase delta subunit [Thermococcus litoralis]
           Length = 263
           
 Score =  164 bits (412), Expect = 7e-40
 Identities = 92/247 (37%), Positives = 141/247 (56%), Gaps = 16/247 (6%)

Query: 2   DKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAE----FHMATSQRGREKLDVALV 57
           +K+++G + LTSC GC L    + E    IL   D AE    F +        ++D+A +
Sbjct: 4   EKVRIGFYALTSCYGCQLQFAMMDE----ILHLLDKAEIECWFMVERDSDEDREVDIAFI 59

Query: 58  TGSVSTQRDLEVVKDARNRAEYLIALGTCATHGGVQG-SIEGSVKEGLRKIYGD--MKGP 114
            GSVSTQ ++E+VK  R +A+ ++A+G CAT GGVQ    +  + E  + +YGD  +K  
Sbjct: 60  EGSVSTQEEVELVKKIREKAKIVVAVGACATQGGVQSWGKDKELSELWKTVYGDAHVKFE 119

Query: 115 SKVLEPRAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYEC 174
            K+ EP  V +++ VD+ + GCP +K +    L     G  P   DYPVC+EC+L    C
Sbjct: 120 PKMAEP--VEKYIKVDYKLYGCPPEKKDFLYALGTFLVGSWPEDIDYPVCVECRLRGNPC 177

Query: 175 VLLKRGVPCLGPVTLGGCNAKCPSIGLGCIGCRGLVPDPNI---PGLVEVLKNIIPEEDI 231
           +L+++G PCLGPVT+ GC+A+CP   + CIGCRG V           +E  K  + +E+I
Sbjct: 178 ILIEKGEPCLGPVTVAGCDARCPGFNVACIGCRGAVGYDVAWFDSLALEFKKKGLTKEEI 237

Query: 232 VRKLKTF 238
           + ++K F
Sbjct: 238 LERMKIF 244


>pir||F64448 methylviologen-reducing hydrogenase gamma chain homolog -
           Methanococcus jannaschii >gi|1591819|gb|AAB99193.1|
           (U67560) methylviologen-reducing hydrogenase, gamma
           chain (vhuG) [Methanococcus jannaschii]
           Length = 288
           
 Score =  111 bits (274), Expect = 1e-23
 Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 30/235 (12%)

Query: 4   LKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHM-ATSQRGREKLDVALVTGSVS 62
           +K+G+ +L  C GC +++L L+++L ++L   +I    + A  +   E +DV LV G + 
Sbjct: 6   VKVGMIQLCGCSGCHISLLDLHDKLLEVLPNLEIVYAPIIADPKEIPEGIDVFLVEGGIR 65

Query: 63  TQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRK-IYG----DMKG--PS 115
            + D  ++ + R +++ +IA GTCA +GG+ G      KE L   +Y     + KG  PS
Sbjct: 66  NEHDEHLIHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKEELLNYVYSTDSTENKGEIPS 125

Query: 116 KVLEP-----RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLEC--- 167
           + + P     + + + + VD+ IPGCP     +   ++ +  G EP      VC EC   
Sbjct: 126 EEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIALLNGEEPKLPTKIVCDECPRK 185

Query: 168 KLNEY--------------ECVLLKRGVPCLGPVTLGGCNAKCPSIGLGCIGCRG 208
           K N +              E  L ++G  CLG  T  GC AKCPS G+ C GC G
Sbjct: 186 KENVFPETFKRTHEGRPDPERCLFEQGYTCLGFATRAGCGAKCPSAGVPCRGCFG 240


>pir||S24800 methylviologen-reducing hydrogenase chain vhuG - Methanococcus
           voltae
           Length = 287
           
 Score =  106 bits (262), Expect = 3e-22
 Identities = 71/237 (29%), Positives = 111/237 (45%), Gaps = 30/237 (12%)

Query: 2   DKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSV 61
           DK++LG+ +L  C GC +++L L+E+L D+L   +I    +    +   + DV L+ G  
Sbjct: 3   DKVRLGLIQLCGCSGCHISLLDLHEQLLDVLPNLEIVYAPIIADVKEIPECDVFLIEGGA 62

Query: 62  STQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRK-IYG----DMKG--P 114
             + D  ++ + R +++ +IA GTCA +GG+ G       E L+K +YG    D  G  P
Sbjct: 63  RNEHDEHLIHEIREKSKVVIAWGTCAVYGGIPGLGNLYSAEQLKKTVYGTETTDNVGELP 122

Query: 115 SKVLEP------RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECK 168
           S  + P        V   V V++ IPGCP   +     ++ +  G +P      VC EC 
Sbjct: 123 SDEMVPPLTNSVMPVPSIVDVEYVIPGCPPRPEINAGAIVALLEGRDPELPQKIVCDECP 182

Query: 169 LN-----------------EYECVLLKRGVPCLGPVTLGGCNAKCPSIGLGCIGCRG 208
                              + E  L ++G  C+G  T  GC A CPS G+ C GC G
Sbjct: 183 RTKENVIPETFKRTFEGTPDNEKCLFEQGYTCVGMGTRAGCGALCPSAGVPCRGCYG 239


>pir||C59304 methylviologen-reducing hydrogenase gamma chain homolog vhuG
           [similarity] - Methanococcus voltae
           >gi|1747407|emb|CAA43509.1| (X61204)
           methylviologen-reducing hydrogenase subunit
           [Methanococcus voltae]
           Length = 287
           
 Score =  106 bits (261), Expect = 4e-22
 Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 30/237 (12%)

Query: 2   DKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSV 61
           DK++LG+ +L  C GC +++L L+E+L D+L   +I    +    +   + DV L+ G  
Sbjct: 3   DKVRLGLIQLCGCSGCHISLLDLHEQLLDVLPNLEIVYAPIIADVKEIPECDVFLIEGGA 62

Query: 62  STQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRK-IYG----DMKG--P 114
             + D  ++ + R +++ +IA GTCA +GG+ G       E L+K +YG    D  G  P
Sbjct: 63  RNEHDEHLIHEIREKSKVVIAWGTCAVYGGIPGLGNLYSAEQLKKTVYGTETTDNVGELP 122

Query: 115 SKVLEP------RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECK 168
           S  + P        V   V V++ IPGCP   +     ++ +  G +P      VC EC 
Sbjct: 123 SDEMVPPLTNSVMPVPSIVDVEYVIPGCPPRPEINAGAIVALLEGRDPELPKKIVCDECP 182

Query: 169 LNEYECV-----------------LLKRGVPCLGPVTLGGCNAKCPSIGLGCIGCRG 208
             +   +                 L ++G  C+G  T  GC A CPS G+ C GC G
Sbjct: 183 RTKENVIPETFKRTFEGTPDPEKCLFEQGYTCVGMGTRAGCGALCPSAGVPCRGCYG 239


>gi|11498969 methylviologen-reducing hydrogenase, subunit gamma (vhuG)
           [Archaeoglobus fulgidus] >gi|7483871|pir||D69421
           methylviologen-reducing hydrogenase, subunit gamma
           (vhuG) homolog - Archaeoglobus fulgidus
           >gi|2649199|gb|AAB89871.1| (AE001009)
           methylviologen-reducing hydrogenase, subunit gamma
           (vhuG) [Archaeoglobus fulgidus]
           Length = 293
           
 Score = 99.8 bits (245), Expect = 3e-20
 Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 28/245 (11%)

Query: 14  CGGCALNILFLYERLFDILEFYDIAEFHMATSQRGR-EKLDVALVTGSVSTQRDLEVVKD 72
           C GC +++L L ER+ D       A   +   +  R  ++D A + G +     +E+V++
Sbjct: 12  CSGCTMSMLDLGERMNDFRMRVAWAAPTLGDGKYDRIPEVDYAFIEGGIGLSEHVEIVRE 71

Query: 73  ARNRAEYLIALGTCATHGGVQGSIEGSVKEGL--------RKIYGDMKGPSKVLEPRAVV 124
            R ++E L+A G CA+ GG+ G      KE +        +   GD++ P  +   + + 
Sbjct: 72  LREKSETLVAFGICASCGGIMGLANLHSKEEILEDVFGSAKSSVGDLRIPEMLEFVKPLD 131

Query: 125 EHVPVDFAIPGCPYDKDEVFQVLMDIARGVEP-VTKDYPVCLECKLN------------- 170
             V VD  I GCP   ++++     I  G    +T    VC  C  N             
Sbjct: 132 SVVEVDCYIGGCPPTPEQIYNAFKAIFEGERGWITSGKSVCEFCSRNLSEKFGEVSRFLR 191

Query: 171 --EYECVLLKRGVPCLGPVTLGGCNAKCPSIGLGCIGCRGLVP--DPNIPGLVEVLKNII 226
             + EC  LK+G+ C GP T G C A CP+    C GC G++P  D +   LV++L ++ 
Sbjct: 192 VPDKEC-FLKQGILCFGPATQGDCMASCPNSNSPCRGCGGMLPSVDDHGSALVDMLSSLT 250

Query: 227 PEEDI 231
            E+ I
Sbjct: 251 DEKGI 255


>sp|P22319|HOXY_ALCEU NAD-REDUCING HYDROGENASE HOXS DELTA SUBUNIT >gi|95478|pir||C35385
           hydrogen dehydrogenase (EC 1.12.1.2) delta chain -
           Alcaligenes eutrophus >gi|141949|gb|AAC06142.1| (M55230)
           NAD-reducing hydrogenase [Ralstonia eutropha]
           Length = 209
           
 Score = 78.0 bits (189), Expect = 1e-13
 Identities = 55/189 (29%), Positives = 87/189 (45%), Gaps = 27/189 (14%)

Query: 3   KLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSVS 62
           K+K+    L  C GC L+ L + ERL  +LE   +    +   +R  E+  +  V G VS
Sbjct: 30  KIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKRIPERCAIGFVEGGVS 89

Query: 63  TQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIE-GSVKEGLRKIYGDMKGPSKVLEPR 121
           ++ ++E ++  R   + LI++G CA  GGV        +K+ L + Y  +   + V   +
Sbjct: 90  SEENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCLAEAY--VNSATAVPGAK 147

Query: 122 AVV-----------------EHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVC 164
           AVV                 E V +D+ IPGCP D D +F+VL D+  G        P  
Sbjct: 148 AVVPFHPDIPRITTKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDDLVNG-------RPFD 200

Query: 165 LECKLNEYE 173
           L   +N Y+
Sbjct: 201 LPSSINRYD 209


>sp|Q60340|FRHG_METJA COENZYME F420 HYDROGENASE GAMMA SUBUNIT
           (8-HYDROXY-5-DEAZAFLAVIN-REDUCING HYDROGENASE GAMMA
           SUBUNIT) (FRH) >gi|2127831|pir||G64303 coenzyme F420
           hydrogenase gamma chain homolog - Methanococcus
           jannaschii >gi|1590833|gb|AAB98010.1| (U67461) coenzyme
           F420-reducing hydrogenase, gamma subunit [Methanococcus
           jannaschii]
           Length = 230
           
 Score = 78.0 bits (189), Expect = 1e-13
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 19/200 (9%)

Query: 4   LKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSV-- 61
           +K+   +L SC GC +++   YE+L D+L   ++         R   + D+ALV GSV  
Sbjct: 5   VKVAHVQLCSCCGCLVSLADTYEKLLDVLNSIELVYCQTLADAREIPECDIALVEGSVCL 64

Query: 62  STQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEPR 121
                LEV ++ R +A+ ++ALG CA  GGV    +G+    L K       P       
Sbjct: 65  DDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGN---QLSKPVHSSFSP------- 114

Query: 122 AVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRGV 181
            + E + VD AIPGCP   + +  V+     G     + Y    E       C ++ + V
Sbjct: 115 -LTEVIKVDLAIPGCPPSPEAIVGVITAALNGDMEYLQPYAELAEKGSEACGCDVIYKVV 173

Query: 182 P---CLGPVTLGGCNAKCPS 198
               C+G    G C A CP+
Sbjct: 174 NKSLCMG---CGTCAAACPT 190


>emb|CAA56463.1| (X80180) hydrogenase small beta subunit [Acetomicrobium flavidum]
           Length = 179
           
 Score = 77.3 bits (187), Expect = 2e-13
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 1   MDKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGS 60
           M K K+  F L +C GC ++ L L ERL D+ +  +I  F      +    +DV +++G 
Sbjct: 1   MAKAKVATFWLEACAGCHMSFLDLDERLIDLFQNVEIL-FSPIVDAKDIPNIDVGVLSGG 59

Query: 61  VSTQRDLEVVKDARNRAEYLIALGTCATHGGV--------------QGSIEGSVKEGLRK 106
           +    ++E+ K  R R +YL+A G CA  GG+              +G IE +     + 
Sbjct: 60  LGNVEEVELAKKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQG 119

Query: 107 IYGDMKGPSKVLEPRAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEP 156
           I      P  +     +   V VD  +PGCP D D ++ V  ++  G  P
Sbjct: 120 IVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVP 169


>gb|AAB57891.1| (U70364) NAD-reducing hydrogenase delta subunit [Rhodococcus
           opacus]
           Length = 209
           
 Score = 77.3 bits (187), Expect = 2e-13
 Identities = 53/187 (28%), Positives = 90/187 (47%), Gaps = 23/187 (12%)

Query: 3   KLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSVS 62
           K+K+ +  L  C GC L+ L + ERL  +L+   +    ++  +R  E+  +  + G V+
Sbjct: 30  KIKVAMIGLCGCWGCTLSFLDMDERLLVLLDKVTLHRSSLSDIKRITERCAIGFIEGGVA 89

Query: 63  TQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIE-GSVKEGLRKIYGD----MKGPSKV 117
            + ++E ++  R   + LI++G CA  GGV        +K+ L ++Y D    + G   V
Sbjct: 90  NEENIETLEHYRENCDVLISVGACAVWGGVPAMRNVFELKDCLSEVYIDSATSVPGAKPV 149

Query: 118 LE-----PRAV------VEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLE 166
           +      PR         E V +D+ IPGCP D D +F+VL D+  G        P  L 
Sbjct: 150 VPFHPDIPRITDKVYPCHEVVKMDYFIPGCPPDADAIFKVLDDLVNG-------RPFDLP 202

Query: 167 CKLNEYE 173
             +N+Y+
Sbjct: 203 SSINQYD 209


>pir||S16726 methylviologen-reducing hydrogenase chain vhcG - Methanococcus
           voltae
           Length = 289
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 55/227 (24%), Positives = 98/227 (42%), Gaps = 46/227 (20%)

Query: 14  CGGCALNILFLYERLFDILEFYDIAEFHMATSQRG-REKLDVALVTGSVSTQRDLEVVKD 72
           C GC ++++ L+E L DILE  ++    +    R   + +DVAL+ G V +  +L + ++
Sbjct: 12  CSGCHISLIDLHEDLLDILEQVELIHSPVLMDVREIPDDIDVALIEGGVRSGENLHIARE 71

Query: 73  ARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEPRAVV-------- 124
            R  A+ +IA GTCA +GG+ G              G++   +++LE   V+        
Sbjct: 72  MREEAKVVIAFGTCAVYGGIPG-------------MGNLYSTAELLEKAPVLHLTSRVTP 118

Query: 125 --EHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLEC--------------- 167
             + + VD+     P   + +  VL  +    EP   +  +C  C               
Sbjct: 119 LSQVIDVDYIFQDAPPKPELIASVLTALLEEKEPELSNKNMCEVCPREKSSEGVVVGELK 178

Query: 168 -----KLNEYECVLLKRGVPCLGPVTLGGCNAKCPSI-GLGCIGCRG 208
                +++  +C LL++G  C+G  T   C   C  +  + C GC G
Sbjct: 179 RNYEGEIDPKKC-LLEQGYVCMGVATRASCRCFCALVRHVPCTGCYG 224


>pir||S32834 methylviologen-reducing hydrogenase chain vhcG [similarity] -
           Methanococcus voltae >gi|296615|emb|CAA43505.1| (X61203)
           methylviologen reducing hydrogenase subunit
           [Methanococcus voltae]
           Length = 306
           
 Score = 71.8 bits (173), Expect = 7e-12
 Identities = 57/231 (24%), Positives = 98/231 (41%), Gaps = 37/231 (16%)

Query: 14  CGGCALNILFLYERLFDILEFYDIAEFHMATSQRG-REKLDVALVTGSVSTQRDLEVVKD 72
           C GC ++++ L+E L DILE  ++    +    R   + +DVAL+ G V +  +L + ++
Sbjct: 12  CSGCHISLIDLHEDLLDILEQVELIHSPVLMDVREIPDDIDVALIEGGVRSGENLHIARE 71

Query: 73  ARNRAEYLIALGTCATHGGVQGSIE-GSVKEGLRKIY-------------GDMKGPSKVL 118
            R  A+ +IA GTCA +GG+ G     S +E L K Y                + P+   
Sbjct: 72  MREEAKVVIAFGTCAVYGGIPGMGNLYSNEELLEKAYKTTITTKNDEGIIPSEEVPALTS 131

Query: 119 EPRAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLEC----------- 167
               + + + VD+     P   + +  VL  +    EP   +  +C  C           
Sbjct: 132 RVTPLSQVIDVDYIFQDAPPKPELIASVLTALLEEKEPELSNKNMCEVCPREKSSEGVVV 191

Query: 168 ---------KLNEYECVLLKRGVPCLGPVTLGGCNAKCPSI-GLGCIGCRG 208
                    +++  +C LL++G  C+G  T   C   C  +  + C GC G
Sbjct: 192 GELKRNYEGEIDPKKC-LLEQGYVCMGVATRASCRCFCALVRHVPCTGCYG 241


>pir||S24797 coenzyme F420-reducing hydrogenase chain furG [similarity] -
           Methanococcus voltae >gi|44707|emb|CAA43502.1| (X61202)
           F420-reducing hydrogenase subunit [Methanococcus voltae]
           Length = 228
           
 Score = 69.9 bits (168), Expect = 3e-11
 Identities = 62/241 (25%), Positives = 98/241 (39%), Gaps = 35/241 (14%)

Query: 4   LKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFH-MATSQRGREKLDVALVTGSV- 61
           +K+   +L+SC GC +++   YE+L D+L   D+     +A  +   + +D+ L+ GSV 
Sbjct: 2   VKVAHVQLSSCCGCLVSLTDTYEKLLDVLGAIDLVYSQTLADVREVPDDVDIILLEGSVC 61

Query: 62  -STQRDLEVVKDARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEP 120
            S    LE     R +A+ L+ALG CA  G +     G     + K   D   P      
Sbjct: 62  LSDHHALETALACREKAKILVALGACAASGNITRFSRGG---QMSKPVHDAFAP------ 112

Query: 121 RAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGVEPVTKDYPVCLECKLNEYECVLLKRG 180
             + E V  D AIPGCP   + +  V+     G     + Y    +       C L+ + 
Sbjct: 113 --LTEVVKCDLAIPGCPPSPESIVAVITAALEGDMDYLEPYAELAKYGSEACGCDLIVKV 170

Query: 181 VP---CLGPVTLGGCNAKCPS---------------IGLGCIGCRGLVPDPNIPGLVEVL 222
           +    C+G    G C A CP+               I + C  C    P    P L+E +
Sbjct: 171 INKSLCMG---CGACAAACPTRAVTMECGRPAIDKEICIKCGACSVQCPRIRFPELIEKI 227

Query: 223 K 223
           +
Sbjct: 228 E 228


>pir||I39733 hydrogenase small chain - Anabaena variabilis
           >gi|1032479|emb|CAA55876.1| (X79285) hydrogenase small
           subunit [Anabaena variabilis]
           Length = 205
           
 Score = 69.1 bits (166), Expect = 5e-11
 Identities = 52/170 (30%), Positives = 75/170 (43%), Gaps = 14/170 (8%)

Query: 1   MDKLKLGVFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGS 60
           M +LKL    L  C GC ++ L L E L D+    D+     A  +   E +DV LV G+
Sbjct: 25  MSRLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADVVFSPFADIKEYPEGVDVVLVEGA 84

Query: 61  VSTQRDLEVVKDARNRAEYLIALGTCATHGGVQG--SIEGSVKEGLRKIYGDMK--GPSK 116
           ++ +  L  +K  R R++ LI+ G CA  G V    +  GS +  L++ Y       P  
Sbjct: 85  IANEEHLTTIKIVRERSQILISFGDCAVTGNVTALRNPLGSAEPVLQRCYIQAVDINPQI 144

Query: 117 VLEP--------RAVVEH--VPVDFAIPGCPYDKDEVFQVLMDIARGVEP 156
             EP        R    H  VPVD  +PGCP     +   L  + +G  P
Sbjct: 145 PQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGKTP 194


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.144    0.444 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92302299
Number of Sequences: 2977
Number of extensions: 3886708
Number of successful extensions: 8103
Number of sequences better than 1.0e-10: 18
Number of HSP's better than  0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8068
Number of HSP's gapped (non-prelim): 18
length of query: 241
length of database: 189,106,746
effective HSP length: 50
effective length of query: 191
effective length of database: 159,182,396
effective search space: 30403837636
effective search space used: 30403837636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)