BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0642 (PAB0642) DE:RECOMBINASE related
(240 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75070 recombinase related PAB0642 - Pyrococcus abyssi (str... 488 e-137
pir||D71095 hypothetical protein PH1025 - Pyrococcus horikoshii ... 425 e-118
gi|11499038 conserved hypothetical protein [Archaeoglobus fulgid... 143 1e-33
pir||S76478 hypothetical protein - Synechocystis sp. (strain PCC... 109 4e-23
pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (str... 102 5e-21
pir||H72384 conserved hypothetical protein - Thermotoga maritima... 101 9e-21
pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii ... 99 4e-20
pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii ... 99 6e-20
pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (str... 98 1e-19
pir||F75205 hypothetical protein PAB0112 - Pyrococcus abyssi (st... 96 5e-19
pir||H71240 hypothetical protein PH0186 - Pyrococcus horikoshii ... 95 7e-19
gi|11497963 conserved hypothetical protein [Archaeoglobus fulgid... 91 1e-17
gb|AAG20092.1| (AE005088) circadian regulator; KaiC [Halobacteri... 91 1e-17
pir||T44269 hypothetical protein KaiC [imported] - Synechococcus... 90 2e-17
gb|AAK42049.1| Conserved hypothetical protein [Sulfolobus solfat... 90 3e-17
gb|AAG01686.1|AF222602_1 (AF222602) KaiC [Nodularia PCC73104] 88 1e-16
pir||S76850 hypothetical protein - Synechocystis sp. (strain PCC... 84 2e-15
gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfat... 83 3e-15
pir||D69012 conserved hypothetical protein MTH1094 - Methanobact... 82 5e-15
gb|AAG01690.1|AF222605_1 (AF222605) KaiC [Cylindrospermum PCC7417] 82 5e-15
pir||F64469 hypothetical protein MJ1359 - Methanococcus jannasch... 82 6e-15
pir||S75060 conserved hypothetical protein sll1595 - Synechocyst... 81 1e-14
pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (str... 74 1e-12
pir||C69157 recombinase - Methanobacterium thermoautotrophicum (... 71 9e-12
gi|11498064 conserved hypothetical protein [Archaeoglobus fulgid... 70 2e-11
gb|AAG01689.1|AF222604_1 (AF222604) KaiC [Geitlerinema PCC7105] 69 4e-11
gb|AAG01685.1|AF222601_1 (AF222601) KaiC [Xenococcus PCC7305] >g... 69 5e-11
gi|11497966 conserved hypothetical protein [Archaeoglobus fulgid... 68 8e-11
>pir||E75070 recombinase related PAB0642 - Pyrococcus abyssi (strain Orsay)
>gi|5458378|emb|CAB49866.1| (AJ248286) RECOMBINASE
related [Pyrococcus abyssi]
Length = 240
Score = 488 bits (1242), Expect = e-137
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MQKYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYV 60
MQKYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYV
Sbjct: 1 MQKYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYV 60
Query: 61 SLIHKPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVE 120
SLIHKPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVE
Sbjct: 61 SLIHKPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVE 120
Query: 121 DEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDKYSEEHF 180
DEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDKYSEEHF
Sbjct: 121 DEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDKYSEEHF 180
Query: 181 LVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGAVEDGE 240
LVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGAVEDGE
Sbjct: 181 LVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGAVEDGE 240
>pir||D71095 hypothetical protein PH1025 - Pyrococcus horikoshii
>gi|3257439|dbj|BAA30122.1| (AP000004) 236aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 236
Score = 425 bits (1081), Expect = e-118
Identities = 202/236 (85%), Positives = 224/236 (94%)
Query: 1 MQKYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYV 60
MQ ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGM FLLEGAR+GEKVAY+
Sbjct: 1 MQTQQERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMQFLLEGARRGEKVAYI 60
Query: 61 SLIHKPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVE 120
SLIHKPEEVV+DM+RFDPS+YVYVN W+L+LYDLGP+LWREST+VPTWRSVLSRIREI E
Sbjct: 61 SLIHKPEEVVRDMVRFDPSVYVYVNNWRLILYDLGPILWRESTKVPTWRSVLSRIREITE 120
Query: 121 DEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDKYSEEHF 180
+E I+RLVIDPLTAIDFPLQ+PVEKRVELAKF+R LE+LGVT YLIAEM+E+DKYSEEH+
Sbjct: 121 NEKITRLVIDPLTAIDFPLQDPVEKRVELAKFVRSLENLGVTTYLIAEMVELDKYSEEHY 180
Query: 181 LVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGAV 236
LVSGII+LHYFMH+GRMIRAIQI+KMRGT+HD NLKLLKFTD+GLVVYNKSPF V
Sbjct: 181 LVSGIIMLHYFMHEGRMIRAIQIFKMRGTKHDPNLKLLKFTDQGLVVYNKSPFEVV 236
>gi|11499038 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448143|pir||B69430 conserved hypothetical protein
AF1443 - Archaeoglobus fulgidus
>gi|2649128|gb|AAB89805.1| (AE001004) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 248
Score = 143 bits (358), Expect = 1e-33
Identities = 84/244 (34%), Positives = 134/244 (54%), Gaps = 25/244 (10%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARK-GEKVAYVSLIH 64
ER+ TG+ G DEL GGL+ R YL++GP GSGKT F M +L+ G K E +V+
Sbjct: 6 ERVPTGIPGFDELCSGGLLRDRSYLVSGPSGSGKTIFAMQYLVNGIEKYNEPGVFVATEE 65
Query: 65 KPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVP-------------TWRSV 111
+P+ + + L F + Y ++ L + D ST++ RS+
Sbjct: 66 RPQHLREHFLTFGWDLEKYEDENMLAIVD------ATSTKIGLPSDERYIDVRPFDTRSL 119
Query: 112 LSRIREIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE 171
L +I I ++ G R V+D T+I F + +P + RVEL K +E LG+T+ L E++E
Sbjct: 120 LDQIITIQDEIGARRAVVDSTTSIGFTISDPAKFRVELLKISTTMEILGLTSILTCEVVE 179
Query: 172 -----MDKYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLV 226
+ ++ E+F+V G I+L+Y + +R+I+I+KMRGT H S + + T+ G+V
Sbjct: 180 GGGDKISRFGVENFVVEGTIVLYYTRIENTRVRSIEIFKMRGTNHSSKIHPFEITENGIV 239
Query: 227 VYNK 230
VY+K
Sbjct: 240 VYSK 243
>pir||S76478 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653695|dbj|BAA18607.1| (D90915) hypothetical
protein [Synechocystis sp.]
Length = 505
Score = 109 bits (269), Expect = 4e-23
Identities = 74/239 (30%), Positives = 115/239 (47%), Gaps = 10/239 (4%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHK 65
E++ TG+ G D L +GGL GR LI G GS KT F FL+EG ++GE +V+
Sbjct: 10 EKLETGIPGFDFLSDGGLPLGRATLIAGTAGSAKTIFASQFLVEGIQRGENGVFVTFEEP 69
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTW--RSVLSRIREIVEDEG 123
P+ + K+M F I + N+ K + D P + ++++RI V
Sbjct: 70 PKALRKNMRGFGWDIQQWENEGKWVFVDASPQPGDRPIVSGEYDLGALIARIEHAVRKYK 129
Query: 124 ISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMI----EMDKYSEEH 179
SR+ +D L AI L + + R +L + L +LGVTA + AE + E+ +Y E
Sbjct: 130 ASRISLDSLGAIFSHLSDSAQVRSDLFRLASALRELGVTAIMTAERVEEYGEISRYGVEE 189
Query: 180 FLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHD-SNLKLLKFTDKGLVVYNKSPFGAVE 237
F+ ++I+ + + R I+I K RGT H KG+V+ P A+E
Sbjct: 190 FVADNVVIVRNVLADEKRRRTIEILKYRGTDHQKGEFPFTIINKKGIVII---PLSAIE 245
>pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (strain K1)
>gi|5105190|dbj|BAA80504.1| (AP000061) 251aa long
hypothetical protein [Aeropyrum pernix]
Length = 251
Score = 102 bits (251), Expect = 5e-21
Identities = 69/240 (28%), Positives = 119/240 (48%), Gaps = 15/240 (6%)
Query: 1 MQKYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYV 60
M +R+ TG+ G+D+++ GG+ V L++G PG+GK+ F +L G R+GE +V
Sbjct: 1 MYSLVDRVKTGIPGMDDILYGGIPRRNVVLLSGGPGTGKSIFSYQYLWNGLREGEPGVFV 60
Query: 61 SLIHKPEEVVKDMLRFDPSIYVYVNKWKLMLYD-----LGPVLWRESTRVPTWRSV---L 112
+L P +V +M +F + Y + + D +G +E V V +
Sbjct: 61 ALEEHPVQVRINMAQFGWDVREYERQGLFAVVDAFTSGIGEAAKKERYVVTDPEDVGLLI 120
Query: 113 SRIREIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEM 172
++E + D G R+ +D ++ + L PV R + R L LG T+ L++++
Sbjct: 121 DVLKEAIRDVGAKRVAVDSVSTL--YLAKPVLARRTVMLLKRVLSGLGTTSILVSQVSVT 178
Query: 173 DK----YSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
++ EH GII L G ++R++ I+KMRGT+H + TDKG++VY
Sbjct: 179 ERGFGGPGVEH-AADGIIRLDLDEVDGELVRSLIIWKMRGTKHSMRRHPFEITDKGIIVY 237
>pir||H72384 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980874|gb|AAD35457.1|AE001717_3 (AE001717)
conserved hypothetical protein [Thermotoga maritima]
Length = 253
Score = 101 bits (249), Expect = 9e-21
Identities = 70/238 (29%), Positives = 117/238 (48%), Gaps = 15/238 (6%)
Query: 3 KYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSL 62
K +R+ TG+ G+DE++ GG+ + LI+G PG+GKT F F+ G + GE YV+L
Sbjct: 11 KMIKRVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVAL 70
Query: 63 IHKPEEVVKDMLRFDPSIYVYVNKWKLMLYD-----LGPVLWRES---TRVPTWRSVLSR 114
P +V K+M F ++ + + K + D +G +E + R +
Sbjct: 71 EEHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAEKEKYVVRDIDDVRELAEV 130
Query: 115 IREIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDK 174
++ V + R+VID +T + + P R + + R L LG T+ ++++ +K
Sbjct: 131 LKRAVRETQAKRVVIDSVTTL--YITKPAMARSIIFQLKRILSGLGCTSLFVSQVSVTEK 188
Query: 175 ----YSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
EH V GII L G + R++ ++KMRGT H + TDKG+V+Y
Sbjct: 189 GFGGPGVEHG-VDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVIY 245
>pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii
>gi|3256673|dbj|BAA29356.1| (AP000001) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 99.1 bits (243), Expect = 4e-20
Identities = 67/234 (28%), Positives = 111/234 (46%), Gaps = 15/234 (6%)
Query: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHKP 66
R+ TG+ G+DE++ GG+ V L++G PG+GKT F FL G + GE YV+L P
Sbjct: 9 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHP 68
Query: 67 EEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTW--------RSVLSRIREI 118
+V ++M +F + Y K + D +S + R + +R+
Sbjct: 69 VQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 128
Query: 119 VEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDK---- 174
+ D R+V+D +T + + P R + + R L G T+ ++++ ++
Sbjct: 129 IRDINAKRVVVDSVTTL--YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGG 186
Query: 175 YSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
EH V GII L G + R++ ++KMRGT H TDKG++VY
Sbjct: 187 PGVEHG-VDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVY 239
>pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii
>gi|3257244|dbj|BAA29927.1| (AP000003) 483aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 483
Score = 98.7 bits (242), Expect = 6e-20
Identities = 64/230 (27%), Positives = 116/230 (49%), Gaps = 20/230 (8%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHK 65
E+I+TG++ LDE+++GG+ G LI G G+GKTTF +HF + A +G KVAY++
Sbjct: 266 EKITTGIERLDEMLDGGIYKGSSVLIVGMTGTGKTTFSLHFAIANALQGRKVAYITFEEP 325
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVEDEGIS 125
+++++ + I + + +L W ++ P + +I+EI+E+
Sbjct: 326 IDQIIRSAKNYGMPIEEVLGR------NLKIFAWVPESKTPVHTYI--KIKEIIEEFKPE 377
Query: 126 RLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLG-----VTAYLIAEMIEMD--KYSEE 178
L+ID LTA+ L EL K +R L+ L T + E + D ++
Sbjct: 378 ALIIDSLTALREHLDEK-----ELTKMLRYLQLLTKEKRITTYFTFTEEAKFDVVPFTGA 432
Query: 179 HFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
+V II+L Y + ++ + + I K RG+ H + + T++G+ +Y
Sbjct: 433 STMVDVIILLKYEIENEKIEKRLAIIKARGSNHSRKIHKYEITNRGVEIY 482
>pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (strain Orsay)
>gi|5457691|emb|CAB49182.1| (AJ248283) recombinase
related [Pyrococcus abyssi]
Length = 247
Score = 97.5 bits (239), Expect = 1e-19
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 15/234 (6%)
Query: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHKP 66
RI TG+ G+D+++ GG+ V L++G PG+GKT F FL G + GE YV+L P
Sbjct: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
Query: 67 EEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTW--------RSVLSRIREI 118
+V ++M +F + Y + + D +S + R + +R+
Sbjct: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
Query: 119 VEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDK---- 174
+ D R+V+D +T + + P R + + R L G T+ ++++ ++
Sbjct: 124 IRDINAKRVVVDSVTTL--YINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGG 181
Query: 175 YSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
EH V GII L G + R++ ++KMRGT H + TDKG+VVY
Sbjct: 182 PGVEHG-VDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVY 234
>pir||F75205 hypothetical protein PAB0112 - Pyrococcus abyssi (strain Orsay)
>gi|5457602|emb|CAB49093.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 251
Score = 95.6 bits (234), Expect = 5e-19
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 13/235 (5%)
Query: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARK-GEKVAYVSLIHK 65
R+ +G+ G DELIEGG G LITG G+GKTTF F+ +GA + GE +V+L +
Sbjct: 11 RVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYD-LGPVLWRESTRVPTWR------SVLSRIREI 118
++ ++M F Y + K+ + D + V+ S + L I +
Sbjct: 71 ASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSEERFVLEDRFNVDNFLRYIYRV 130
Query: 119 VEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE-----MD 173
V+ RLVID + +I L+ + R L K L ++GVT L E + +
Sbjct: 131 VKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGKLS 190
Query: 174 KYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
+Y E F+ G+++L + R + I KMR TRH + G+VVY
Sbjct: 191 RYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245
>pir||H71240 hypothetical protein PH0186 - Pyrococcus horikoshii
>gi|3256572|dbj|BAA29255.1| (AP000001) 251aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 251
Score = 95.2 bits (233), Expect = 7e-19
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 13/235 (5%)
Query: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARK-GEKVAYVSLIHK 65
R+ +G+ G DELIEGG G L+TG G+GKTTF F+ +GA + GE +V+L +
Sbjct: 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYD-LGPVLWRESTRVPTWR------SVLSRIREI 118
++ ++M F Y + K+ + D + V+ S + L I +
Sbjct: 71 ARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRV 130
Query: 119 VEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE-----MD 173
V+ RLVID + +I L+ + R L K L ++GVT L E + +
Sbjct: 131 VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLS 190
Query: 174 KYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
+Y E F+ G+I+L + R + I KMR TRH + G+VVY
Sbjct: 191 RYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245
>gi|11497963 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430039|pir||G69293 conserved hypothetical protein
AF0351 - Archaeoglobus fulgidus
>gi|2650282|gb|AAB90883.1| (AE001080) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 226
Score = 91.3 bits (223), Expect = 1e-17
Identities = 59/230 (25%), Positives = 109/230 (46%), Gaps = 14/230 (6%)
Query: 8 ISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHKPE 67
+ TG++GLD ++ GG+ G + + G G+GKTT G+HF+ EG + GE +S E
Sbjct: 2 LKTGIEGLDAILGGGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDEDEE 61
Query: 68 EVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVEDEGISRL 127
++ D + + +K ++ + V + + S + EIV G+SR+
Sbjct: 62 SIIGDAKSVGMDLTAFGDKVHIVRLEASEV-------KKSLEKLESDLPEIVRSLGVSRM 114
Query: 128 VIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAE----MIEMDKYSEEHFLVS 183
++D ++ ++ L + + LA F + L++ G+TA + +E KY ++
Sbjct: 115 LVDSISVLE-TLFDDAGRYSMLAAFRKMLKENGITAIITSEADKYQPNTSKYGILEYICD 173
Query: 184 GIIILHYFMHQ--GRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKS 231
G+I L +++ KMR +H K TD G+VVY ++
Sbjct: 174 GMISLKVVRKSELDEPTLGLEVVKMRRVKHSRKPKPYIITDSGIVVYEEA 223
>gb|AAG20092.1| (AE005088) circadian regulator; KaiC [Halobacterium sp. NRC-1]
Length = 218
Score = 90.9 bits (222), Expect = 1e-17
Identities = 56/220 (25%), Positives = 107/220 (48%), Gaps = 11/220 (5%)
Query: 18 LIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHKPEEVVKDMLRFD 77
+++GG+ + + G G+GKTTFG+ FL E GE+ +++L V++
Sbjct: 1 MVQGGVPERSLLVAVGEAGTGKTTFGLQFLHEALSNGERAVFITLEESRGRVIQSADEKG 60
Query: 78 PSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVEDEGISRLVIDPLTAIDF 137
+ + ++ L + D+ P+ S S+ + + +VE+ G SRLV+D ++ ++
Sbjct: 61 WAFSEHADRGNLAVVDIDPIEMANSL-----TSIRNELPRLVEEFGASRLVLDSVSLLEM 115
Query: 138 PLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE----MDKYSEEHFLVSGIIILHYFMH 193
+ +R E+ F L++ GVT L +E E +Y +L +++L Y
Sbjct: 116 MYDDQSTRRTEIYDFTTALKEAGVTTMLTSEASEDNPFASRYGVIEYLTDAVVVLRYIRP 175
Query: 194 QG-RMIR-AIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKS 231
+ R R A++I K+R H K + T +G+ VY ++
Sbjct: 176 EDFRETRLAVEIQKIRDANHSRETKPYEITHEGISVYRQA 215
>pir||T44269 hypothetical protein KaiC [imported] - Synechococcus sp. (strain
PCC 7942) >gi|4156230|dbj|BAA37103.1| (AB010691) KaiC
[Synechococcus sp.]
Length = 519
Score = 90.5 bits (221), Expect = 2e-17
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 9/236 (3%)
Query: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARK-GEKVAYVSLIHK 65
++ T ++G D++ GGL GR L++G G+GKT F + FL G + E +V+
Sbjct: 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYDLGP-VLWRESTRVPTWRSVLSRIREIVEDEGI 124
P++++K+ F + V++ KL + D P +E +++ RI ++
Sbjct: 80 PQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRA 139
Query: 125 SRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE----MDKYSEEHF 180
R+ ID +T++ R EL + + L+ +G T + E IE + +Y E F
Sbjct: 140 RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEF 199
Query: 181 LVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGAV 236
+ ++IL + R R ++I K+RGT H TD G+ ++ P GA+
Sbjct: 200 VSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIF---PLGAM 252
>gb|AAK42049.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 280
Score = 89.7 bits (219), Expect = 3e-17
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 15/234 (6%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHK 65
+R+ T + GLDE++ GG+ + L++G PG+GK+ G FL G KGE +++L
Sbjct: 2 KRVKTYIPGLDEILYGGIPERHIVLVSGGPGTGKSILGKQFLYNGLTKGEGGVFIALEEH 61
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYD-----LGPVLWRES---TRVPTWRSVLSRIRE 117
P V + F + Y + K + D +G V RE + + + IR
Sbjct: 62 PVSVRRSFEHFKWDVRKYEREGKFAIIDTFTGGIGNVAQREKYVVKSIDDVKELSENIRA 121
Query: 118 IVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDK--- 174
++D +R+V+D ++ + L P R + + R + LG TA ++++ ++
Sbjct: 122 AIKDINATRIVVDSVSTL--YLTKPAMARSIVMQLKRVISGLGCTAIFVSQVSVGERGFG 179
Query: 175 -YSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVV 227
EH V GII L +G M R+I I+KMR T+ + TD G++V
Sbjct: 180 GPGVEH-AVDGIIRLDLDEVEGVMYRSIIIWKMRDTKISMVRHPMDITDNGIIV 232
>gb|AAG01686.1|AF222602_1 (AF222602) KaiC [Nodularia PCC73104]
Length = 269
Score = 87.8 bits (214), Expect = 1e-16
Identities = 61/237 (25%), Positives = 114/237 (47%), Gaps = 9/237 (3%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEG-ARKGEKVAYVSLIH 64
E+I T ++G D++ GGL GR L++G G+GKT F + FL G R E +V+
Sbjct: 18 EKIRTMIEGFDDISHGGLPVGRTTLVSGTSGTGKTLFSLQFLYNGITRSDEPGVFVTFEE 77
Query: 65 KPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGP-VLWRESTRVPTWRSVLSRIREIVEDEG 123
P +++K+ F ++ +++ KL + D P ++ +++ R++ +
Sbjct: 78 SPSDIIKNAQIFGWNLQRLIDEGKLFILDASPDPEGQDIVGNFDLSALIERLQYAIRKYK 137
Query: 124 ISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE----MDKYSEEH 179
R+ ID +TA+ + R E+ + + L+ L VT + E E + + E
Sbjct: 138 AQRVSIDSITAVFQQYEAMGVVRREIFRLVARLKQLYVTTIITTERXEEYGSVASFGVEE 197
Query: 180 FLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGAV 236
F+ ++I+ + R R I+I K+RGT H T++G+ ++ P GA+
Sbjct: 198 FVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPSTITNEGVNIF---PLGAM 251
>pir||S76850 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653852|dbj|BAA18762.1| (D90917) hypothetical
protein [Synechocystis sp.]
Length = 519
Score = 83.9 bits (204), Expect = 2e-15
Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 9/241 (3%)
Query: 2 QKYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVA-YV 60
+K ++I T ++G DE+ GGL GR L++G G+GKT + FL +G + ++
Sbjct: 16 RKGVQKIRTVIEGFDEITHGGLPIGRTTLVSGTSGTGKTLLAVQFLYQGIHHFDYPGLFI 75
Query: 61 SLIHKPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGP-VLWRESTRVPTWRSVLSRIREIV 119
+ P +++++ F + ++ KL + D P +E +++ RI+ V
Sbjct: 76 TFEESPSDIIENAYSFGWDLQQLIDDGKLFILDASPDPEGQEVVGTFDLSALIERIQYAV 135
Query: 120 EDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE----MDKY 175
+ ID +TA+ R E+ + + L+ L VT+ + E +E + ++
Sbjct: 136 RKYKAKLVSIDSVTAVFQQYDAASVVRREIFRLVARLKQLQVTSIMTTERVEEYGPIARF 195
Query: 176 SEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGA 235
E F+ +++L + R R ++I K+RGT H T G+ ++ P GA
Sbjct: 196 GVEEFVSDNVVVLRNVLEGERRRRTVEILKLRGTTHMKGEYPFTITHDGINIF---PLGA 252
Query: 236 V 236
+
Sbjct: 253 M 253
>gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 262
Score = 83.1 bits (202), Expect = 3e-15
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 23/235 (9%)
Query: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHKP 66
R+STG+ D+LI+GG+ G +TG PG+GKT F +HF+ +G R G+ YV+
Sbjct: 4 RLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESR 63
Query: 67 EEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVE------ 120
+ +++ +F+ Y+ K KL++ D L +E + W V E+V
Sbjct: 64 DSIIRQAKQFNWDFEEYIEK-KLIIID---ALMKE--KEDQWSLVNLTPEELVNKVIEAK 117
Query: 121 ---DEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMI----EMD 173
G +RLVID ++A+ L P R R L T Y ++ +
Sbjct: 118 QKLGYGKARLVIDSVSALF--LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAF 175
Query: 174 KYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTD-KGLVV 227
+ EH + GII + G + R I I KMR T HD ++ + + KG+V+
Sbjct: 176 GFGVEH-VADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVL 229
>pir||D69012 conserved hypothetical protein MTH1094 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622195|gb|AAB85583.1| (AE000880) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 470
Score = 82.3 bits (200), Expect = 5e-15
Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 22/233 (9%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHK 65
E +STG+ LDE++ GG+ G L++G G+GKT+ F E R+GE+ + S
Sbjct: 244 ELVSTGIPTLDEMLGGGVYRGSAVLVSGTTGAGKTSLLSKFAYESCRRGERCLFFSNEEP 303
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPT---WRSVLSRIREIVEDE 122
+++V++M SI + + ++ LG L S R PT + L+ +++++ D
Sbjct: 304 ADQIVRNM----ESIGIKLGEF------LGDKLLIHSDR-PTSLGLEAHLTYMQDLIMDF 352
Query: 123 GISRLVIDPLTAI-------DFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDKY 175
+++DP+T + + +N + L F++G + +YLIA
Sbjct: 353 NPDSVLVDPVTGLAGAGGSPETRNENAKHLFIRLTDFLKGRGITSIFSYLIASPFTATTT 412
Query: 176 S-EEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVV 227
+ L+ I+L G R+++I K RG H S++ ++FTD+G+++
Sbjct: 413 ELKLSSLIDTWIVLESIRANGEYRRSLRILKSRGMNHSSSVAEVRFTDRGILI 465
Score = 70.6 bits (170), Expect = 2e-11
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 3/225 (1%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGAR-KGEKVAYVSLIH 64
E+ TG+KGLD + EGG GR LI G PG+GKT M FLL+GA GE VS
Sbjct: 7 EKAPTGIKGLDMITEGGFPRGRNTLIYGGPGTGKTFIAMEFLLKGASVYGEPGVMVSFDE 66
Query: 65 KPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVEDEGI 124
E ++++ D + +++ L + D + ++ + ++ R+ + + G
Sbjct: 67 AMENLIENFRSSDRLLERLIDEGLLFIEDASRGMDPDAGSY-SLEALKLRLEDAIRRTGA 125
Query: 125 SRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTA-YLIAEMIEMDKYSEEHFLVS 183
R+V+D + + + EL + IR L +GVT+ + + + E ++
Sbjct: 126 RRVVLDKVDNLFDGTERQGMIGFELRELIRWLNGMGVTSVFTSGDYGGSPTHRLEEYISD 185
Query: 184 GIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
+I L + R ++I K RG+ H N T +G ++
Sbjct: 186 CVIHLTHTFEGQVGTRHLRIVKYRGSGHGLNRYPFIITRRGASIF 230
>gb|AAG01690.1|AF222605_1 (AF222605) KaiC [Cylindrospermum PCC7417]
Length = 269
Score = 82.3 bits (200), Expect = 5e-15
Identities = 59/237 (24%), Positives = 111/237 (45%), Gaps = 9/237 (3%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGAR-KGEKVAYVSLIH 64
E+I T ++G D++ GGL GR L++G G+GKT + FL G E +V+
Sbjct: 18 EKIRTMIEGFDDISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITCFDEAGVFVTFEE 77
Query: 65 KPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGP-VLWRESTRVPTWRSVLSRIREIVEDEG 123
P +++K+ F +++ + + KL + D P ++ +++ R++ +
Sbjct: 78 SPSDIIKNANIFGWNLHRLIEEGKLFILDASPDPEGQDIVGNFDLSALIERLQYAIRKYK 137
Query: 124 ISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE----MDKYSEEH 179
R+ ID +TA+ + R E+ + + L+ L VT + E E + + E
Sbjct: 138 AKRVSIDSITAVFQQYEAMGVVRREIFRLVARLKQLSVTTIITTERSEEYGPVASFGVEE 197
Query: 180 FLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVYNKSPFGAV 236
F+ ++I+ + R R I+I K+RGT H T+ G+ ++ P GA+
Sbjct: 198 FVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPFTITNAGVNIF---PLGAM 251
>pir||F64469 hypothetical protein MJ1359 - Methanococcus jannaschii
>gi|1592003|gb|AAB99368.1| (U67576) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 242
Score = 81.9 bits (199), Expect = 6e-15
Identities = 65/236 (27%), Positives = 112/236 (46%), Gaps = 16/236 (6%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEG-ARKGEKVAYVSLIH 64
+R+ TG+ G+DE++ GG+ V L++G PG+GK+ F FL +G E V+L
Sbjct: 2 KRVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVVDYNEPSILVALEE 61
Query: 65 KPEEVVKDMLRFDPSIYVYVNKWKLML-----YDLGPVLWRESTRV---PTWRSVLSRIR 116
P ++ ++M +F I + K + Y +G RE V R ++ ++
Sbjct: 62 HPVQIRENMRQFGWDIRKLEEEGKFAIIDAFTYGIGSAAKREKYVVNDPNDERELIDVLK 121
Query: 117 EIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDK-- 174
+ D G R+ ID +T + + P+ R + R + LG TA +++ ++
Sbjct: 122 TAINDIGAKRIGIDSVTTL--YINKPMLARRTVFLLKRVISGLGCTAIFTSQISVGERGF 179
Query: 175 --YSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
EH V GII L G + R++ ++KMRGT H T++G++VY
Sbjct: 180 GGPGVEH-AVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSLKRHPFDITNEGIIVY 234
>pir||S75060 conserved hypothetical protein sll1595 - Synechocystis sp. (strain
PCC 6803) >gi|1653005|dbj|BAA17922.1| (D90910)
hypothetical protein [Synechocystis sp.]
Length = 568
Score = 80.8 bits (196), Expect = 1e-14
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 4/222 (1%)
Query: 10 TGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGA-RKGEKVAYVSLIHKPEE 68
TG++G DE+ GGL GR LI G G GKT FG+ FL+ GA GE VS +E
Sbjct: 15 TGIQGFDEITNGGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVEYGEPGVLVSFEESAKE 74
Query: 69 VVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWR-ESTRVPTWRSVLSRIREIVEDEGISRL 127
+++++ ++ V + K+++ + + T ++ R+ + G R+
Sbjct: 75 IIQNVASLGWNLQDLVAEEKILIDHIYVEASEIQETGEYDLEALFIRLGYAINKIGAKRI 134
Query: 128 VIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE--MDKYSEEHFLVSGI 185
++D + + L+N R EL + L+ GVTA + E + + + E ++ +
Sbjct: 135 LLDTIEVLFSGLENTNIVRAELRRLFHWLKQKGVTAVITGERGDKNLTRQGLEEYVSDCV 194
Query: 186 IILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVV 227
I L + R IQ+ K RG+RH +N + G+ V
Sbjct: 195 IKLDQKTVEEVATRTIQVVKYRGSRHSNNEYPFLIEENGISV 236
>pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (strain K1)
>gi|5104407|dbj|BAA79722.1| (AP000060) 726aa long
hypothetical protein [Aeropyrum pernix]
Length = 726
Score = 74.1 bits (179), Expect = 1e-12
Identities = 49/150 (32%), Positives = 77/150 (50%), Gaps = 16/150 (10%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHK 65
ER+ TGV+G D L+ GG+ G + G PG+GKT F +HF +G R+G+KV YV+
Sbjct: 5 ERLRTGVEGFDPLVAGGIPRGFFVAVVGEPGTGKTVFSIHFAYQGVREGDKVIYVTTEES 64
Query: 66 PEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWR----SVLSRIREIVED 121
E V+K F + V++ + ++ D +R W SV S + +++E
Sbjct: 65 RESVLKQAAMFGMDLGRAVDEGRAIVIDA-----LLKSRSDEWSLEDVSVESLVNKVLEA 119
Query: 122 E-----GISRLVIDPLTAIDFPLQNPVEKR 146
+ G +RLV+D ++A F L P R
Sbjct: 120 KRALGYGRARLVVDSMSA--FWLDKPAMAR 147
>pir||C69157 recombinase - Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621505|gb|AAB84945.1| (AE000828) recombinase
[Methanobacterium thermoautotrophicum]
Length = 238
Score = 71.4 bits (172), Expect = 9e-12
Identities = 67/234 (28%), Positives = 106/234 (44%), Gaps = 9/234 (3%)
Query: 1 MQKYYERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYV 60
M++ R TG+KGLD++I GG GR L+TG PGSGKT G+ F ++ AR G K Y+
Sbjct: 1 MERRISRTGTGIKGLDDII-GGYPQGRSILVTGDPGSGKTIMGLQFAIQSARSGLKTIYI 59
Query: 61 SLIHKPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWR--ESTRVPTWRSVLSRIREI 118
+ ++ I + KL + L + R E+ SV +R+I
Sbjct: 60 TTEEDETDLRIQCASLGWDITDLLESGKLSIIGLSAMRARLTEAEISIGIESVKGNLRKI 119
Query: 119 VED--EGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDKYS 176
+ + + L+ID + + L E R + I L+ +TA +I + ++++
Sbjct: 120 LAEIPDDTEVLIIDSIGSHTEKLTTD-EFRDQFDLLIYELKKRDITAMIILDSATSEEFN 178
Query: 177 E-EHFLVSGII--ILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVV 227
+ + V G I I + GR R + I KMR TR +D GL V
Sbjct: 179 DIALYSVYGAIRLIKRENPYTGRRERVMDIIKMRSTRTPIEFIPYIISDSGLEV 232
>gi|11498064 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483012|pir||D69306 conserved hypothetical protein
AF0452 - Archaeoglobus fulgidus
>gi|2650173|gb|AAB90781.1| (AE001073) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 443
Score = 70.2 bits (169), Expect = 2e-11
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 6 ERISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARK-GEKVAYVSLIH 64
E + TG++G D++ GG G++ LI G PGSGKTTF FL EGAR+ GE Y+S+
Sbjct: 2 EAVKTGIEGFDDIF-GGFYRGQIILIAGNPGSGKTTFCAKFLYEGARRFGENGLYISIGE 60
Query: 65 KPEEVVKDMLRFDPSIYVYVNKWKL---MLYDLGPVLWRESTRVPTWRSVLSRIREIVED 121
EE Y Y+ K + L G + E + +++ RE+ ++
Sbjct: 61 SKEE-----------FYEYMKKLGMDFEKLEKTGSFKYVEMLAPTSEDALMQLSRELTKN 109
Query: 122 E---GISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDK---- 174
+R+VID ++ I NP R L ++ + + L+ E + + +
Sbjct: 110 ALELKATRIVIDSISPI--LSMNPETARAILHNALKTISRELKSVVLMTEEMPIGETRIG 167
Query: 175 YSEEHFLVSGIIILHYFMHQ-GRMIRAIQIYKMRG 208
E F+V G+I+L + + G +R + + K+RG
Sbjct: 168 QGIEEFVVDGVIVLRLEVPEAGAPVRTMSVLKLRG 202
>gb|AAG01689.1|AF222604_1 (AF222604) KaiC [Geitlerinema PCC7105]
Length = 198
Score = 69.5 bits (167), Expect = 4e-11
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 6/195 (3%)
Query: 21 GGLIPGRVYLITGPPGSGKTTFGMHFLLEGARK-GEKVAYVSLIHKPEEVVKDMLRFDPS 79
GGL GR L++G G+GKT F + F+ G E +V+ P +++K+ F
Sbjct: 3 GGLPRGRTTLVSGTSGTGKTLFAIQFIYNGITYFNEPGVFVTFEESPTDLIKNAQSFGWD 62
Query: 80 IYVYVNKWKLMLYDLGP-VLWRESTRVPTWRSVLSRIREIVEDEGISRLVIDPLTAIDFP 138
+ V++ KL + D P ++ +++ RI+ + R+ ID +TA+
Sbjct: 63 LQGLVDEGKLFILDASPDPEGQDVVGNFDLSALIERIQYGIRKYKAKRVSIDSVTAVFQQ 122
Query: 139 LQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE----MDKYSEEHFLVSGIIILHYFMHQ 194
R E+ + + L+ LG T + E IE + ++ E F+ ++I+ +
Sbjct: 123 YDAAPVIRREIFRLVARLKQLGATTVMTTERIEEYGPVARFGVEEFVSDNVVIVRNVLEG 182
Query: 195 GRMIRAIQIYKMRGT 209
R R I+I K+RGT
Sbjct: 183 ERRRRTIEILKLRGT 197
>gb|AAG01685.1|AF222601_1 (AF222601) KaiC [Xenococcus PCC7305]
>gi|9931432|gb|AAG02176.1|AF239754_1 (AF239754) KaiC
[Calothrix parietina]
Length = 198
Score = 69.1 bits (166), Expect = 5e-11
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 6/195 (3%)
Query: 21 GGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGE-KVAYVSLIHKPEEVVKDMLRFDPS 79
GGL GR L++G G+GKT + FL G + + +V+ P++V+K+ F
Sbjct: 3 GGLPEGRTTLVSGTSGTGKTLLALQFLYHGIKYFDYPGVFVTFEESPQDVIKNAYSFGWD 62
Query: 80 IYVYVNKWKLMLYDLGP-VLWRESTRVPTWRSVLSRIREIVEDEGISRLVIDPLTAIDFP 138
+ V + KL + D P +E +++ RI+ + + ID +TA+
Sbjct: 63 LQNLVERGKLFILDASPDPEGQEVVGNFDLSALIERIQYAINKYKAKLVSIDSVTAVFQQ 122
Query: 139 LQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIE----MDKYSEEHFLVSGIIILHYFMHQ 194
R E+ + + L+ L VT+ + E IE + ++ E F+ ++I+ +
Sbjct: 123 YDAASVVRREIFRLVARLKQLKVTSIMTTERIEEYGPVARFGVEEFVSDNVVIVRNVLEG 182
Query: 195 GRMIRAIQIYKMRGT 209
R R I+I K+RGT
Sbjct: 183 ERRRRTIEILKLRGT 197
>gi|11497966 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7482998|pir||B69294 conserved hypothetical protein
AF0354 - Archaeoglobus fulgidus
>gi|2650280|gb|AAB90881.1| (AE001080) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 238
Score = 68.3 bits (164), Expect = 8e-11
Identities = 64/220 (29%), Positives = 94/220 (42%), Gaps = 9/220 (4%)
Query: 11 GVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHKPEEVV 70
G+ LDEL+ GGL LI G G GKT H+ EGAR E V Y+S +
Sbjct: 8 GISRLDELLGGGLDRYTENLIIGRSGIGKTILAAHWAAEGARNDETVVYLSTTMNKKNCK 67
Query: 71 KDMLRFDPSIYVYVN-KWKLMLYDLGPVLWRESTRVPTWRSVLSRIREI--VEDEGISRL 127
+ RF VY KW+ + D VL T ++ +R ++ + I R+
Sbjct: 68 AYLGRFPFMEDVYDKIKWRFIRVDPKFVL------PLTREKIVEGLRATFGMDGKDIDRV 121
Query: 128 VIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDKYSEEHFLVSGIII 187
V D T ++ L +PV R L D +T+ I E +S +V +I
Sbjct: 122 VFDSCTDLELALADPVLYRRALTYMSDLSYDYEITSLWIEEAPMQGDWSSTKNIVDSVIF 181
Query: 188 LHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVV 227
L+ Q RA++I K TR + TD+G+V+
Sbjct: 182 LNLLRTQEGYQRAMRILKKYRTRVPLEWIPYEITDEGVVI 221
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92122135
Number of Sequences: 2977
Number of extensions: 3810506
Number of successful extensions: 14275
Number of sequences better than 1.0e-10: 28
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 14226
Number of HSP's gapped (non-prelim): 37
length of query: 240
length of database: 189,106,746
effective HSP length: 52
effective length of query: 188
effective length of database: 157,985,422
effective search space: 29701259336
effective search space used: 29701259336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)