BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0643 (PAB0643) DE:Hypothetical protein
         (150 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75070 hypothetical protein PAB0643 - Pyrococcus abyssi (st...   297  3e-80
pir||C71095 hypothetical protein PH1024 - Pyrococcus horikoshii ...   174  4e-43

>pir||F75070 hypothetical protein PAB0643 - Pyrococcus abyssi (strain Orsay)
           >gi|5458379|emb|CAB49867.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 150
           
 Score =  297 bits (753), Expect = 3e-80
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MSFTINLRSGLLKMESEIIEVEIKEILKEKNVVKKAYLFGIYVGLSGHIEWSGWVKEILE 60
           MSFTINLRSGLLKMESEIIEVEIKEILKEKNVVKKAYLFGIYVGLSGHIEWSGWVKEILE
Sbjct: 1   MSFTINLRSGLLKMESEIIEVEIKEILKEKNVVKKAYLFGIYVGLSGHIEWSGWVKEILE 60

Query: 61  EIYREAESKGVYEEVKEAYKEGKELGKRERARRIQLGLMKESEKAKEEEKERITQLGEIK 120
           EIYREAESKGVYEEVKEAYKEGKELGKRERARRIQLGLMKESEKAKEEEKERITQLGEIK
Sbjct: 61  EIYREAESKGVYEEVKEAYKEGKELGKRERARRIQLGLMKESEKAKEEEKERITQLGEIK 120

Query: 121 KMSFPIRERMPRFLEGFLGIKLPRFLRGGL 150
           KMSFPIRERMPRFLEGFLGIKLPRFLRGGL
Sbjct: 121 KMSFPIRERMPRFLEGFLGIKLPRFLRGGL 150


>pir||C71095 hypothetical protein PH1024 - Pyrococcus horikoshii
           >gi|3257438|dbj|BAA30121.1| (AP000004) 132aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 132
           
 Score =  174 bits (437), Expect = 4e-43
 Identities = 84/131 (64%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 21  VEIKEILKEKNVVKKAYLFGIYVGLSGHIEWSGWVKEILEEIYREAESKGVYEEVKEAYK 80
           ++I++IL EKNVVKKAYLFGIYVGL GH+EWSGWV++ILE IYREAES G+Y+EVKEAY 
Sbjct: 2   IKIQDILNEKNVVKKAYLFGIYVGLYGHVEWSGWVRDILESIYREAESLGIYDEVKEAYN 61

Query: 81  EGKELGKRERARRIQLGLMKESEKAK-EEEKERITQLG-EIKKMSFPIRERMPRFLEGFL 138
           EGKE+G+RER RRI  GLMK+ EK +   EK  ++  G E+++++FP  E MPRFL GF 
Sbjct: 62  EGKEVGRRERIRRIHAGLMKDKEKEEISREKIIVSYSGNELRRIAFPRNEDMPRFLRGFK 121

Query: 139 GIKLPRFLRGG 149
            +K P+FLRGG
Sbjct: 122 MLKFPKFLRGG 132


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.139    0.380 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52720644
Number of Sequences: 2977
Number of extensions: 2176449
Number of successful extensions: 15405
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15402
Number of HSP's gapped (non-prelim): 2
length of query: 150
length of database: 189,106,746
effective HSP length: 56
effective length of query: 94
effective length of database: 155,591,474
effective search space: 14625598556
effective search space used: 14625598556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)