BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0644 (PAB0644) DE:Hypothetical protein
         (597 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75070 hypothetical protein PAB0644 - Pyrococcus abyssi (st...  1234  0.0
pir||B71095 hypothetical protein PH1023 - Pyrococcus horikoshii ...  1114  0.0

>pir||G75070 hypothetical protein PAB0644 - Pyrococcus abyssi (strain Orsay)
           >gi|5458380|emb|CAB49868.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 597
           
 Score = 1234 bits (3158), Expect = 0.0
 Identities = 597/597 (100%), Positives = 597/597 (100%)

Query: 1   MFMKFTYHFHAYQPGDIIYVHDGSGWDPIKYSERLSPVALEIREEEVKGRNWTRAMIKAY 60
           MFMKFTYHFHAYQPGDIIYVHDGSGWDPIKYSERLSPVALEIREEEVKGRNWTRAMIKAY
Sbjct: 1   MFMKFTYHFHAYQPGDIIYVHDGSGWDPIKYSERLSPVALEIREEEVKGRNWTRAMIKAY 60

Query: 61  EYVDDTLKMLDKGSVSVDFEPFTLYMILKYKPRIYGEIVETLETQVEPTPTVPFHPIMPH 120
           EYVDDTLKMLDKGSVSVDFEPFTLYMILKYKPRIYGEIVETLETQVEPTPTVPFHPIMPH
Sbjct: 61  EYVDDTLKMLDKGSVSVDFEPFTLYMILKYKPRIYGEIVETLETQVEPTPTVPFHPIMPH 120

Query: 121 LSVFEQEILAKVSFDFYKPFIARKEVVPFWLPENVITKQTAKIIAEATDKDVIFLLDERQ 180
           LSVFEQEILAKVSFDFYKPFIARKEVVPFWLPENVITKQTAKIIAEATDKDVIFLLDERQ
Sbjct: 121 LSVFEQEILAKVSFDFYKPFIARKEVVPFWLPENVITKQTAKIIAEATDKDVIFLLDERQ 180

Query: 181 FIGVNIPQAKFSCNKYLCNGKSAFVFGRVHTISDAFAFNTLDVDGLTRAVAEGCIDVFKE 240
           FIGVNIPQAKFSCNKYLCNGKSAFVFGRVHTISDAFAFNTLDVDGLTRAVAEGCIDVFKE
Sbjct: 181 FIGVNIPQAKFSCNKYLCNGKSAFVFGRVHTISDAFAFNTLDVDGLTRAVAEGCIDVFKE 240

Query: 241 KEGVEYLVFLSSDLESLVANPKQLDKFLNWIDKLKERGVEIVSVGEFVRRKVNDTYRKIP 300
           KEGVEYLVFLSSDLESLVANPKQLDKFLNWIDKLKERGVEIVSVGEFVRRKVNDTYRKIP
Sbjct: 241 KEGVEYLVFLSSDLESLVANPKQLDKFLNWIDKLKERGVEIVSVGEFVRRKVNDTYRKIP 300

Query: 301 GECSESFRINVKDYSSWSDYFDLSVDGRTGDMRWTGIRREDNLVINRVYKGRKVSQLWKY 360
           GECSESFRINVKDYSSWSDYFDLSVDGRTGDMRWTGIRREDNLVINRVYKGRKVSQLWKY
Sbjct: 301 GECSESFRINVKDYSSWSDYFDLSVDGRTGDMRWTGIRREDNLVINRVYKGRKVSQLWKY 360

Query: 361 AFMKLFRELNRTIRFGVIDMLRTNGVEDIEKIKEFLVRYARIFFKEHYEYFELDTSVDYV 420
           AFMKLFRELNRTIRFGVIDMLRTNGVEDIEKIKEFLVRYARIFFKEHYEYFELDTSVDYV
Sbjct: 361 AFMKLFRELNRTIRFGVIDMLRTNGVEDIEKIKEFLVRYARIFFKEHYEYFELDTSVDYV 420

Query: 421 IEPIKDVDPAIALKLGRIYYLMLLSNHSCPRFWENVDTRVTFGNVAVISKALIELMELYL 480
           IEPIKDVDPAIALKLGRIYYLMLLSNHSCPRFWENVDTRVTFGNVAVISKALIELMELYL
Sbjct: 421 IEPIKDVDPAIALKLGRIYYLMLLSNHSCPRFWENVDTRVTFGNVAVISKALIELMELYL 480

Query: 481 EENRERANYIFLEYMKLLAFPQLYYDYDLFRLKGLEGWETTEKAWFDSLRSEVPNSKYNV 540
           EENRERANYIFLEYMKLLAFPQLYYDYDLFRLKGLEGWETTEKAWFDSLRSEVPNSKYNV
Sbjct: 481 EENRERANYIFLEYMKLLAFPQLYYDYDLFRLKGLEGWETTEKAWFDSLRSEVPNSKYNV 540

Query: 541 ITRAALYVGKRDLPDEMKEVIEILYDLDHAVPDTGHIPGEMHGKWENMEWCEHKAVE 597
           ITRAALYVGKRDLPDEMKEVIEILYDLDHAVPDTGHIPGEMHGKWENMEWCEHKAVE
Sbjct: 541 ITRAALYVGKRDLPDEMKEVIEILYDLDHAVPDTGHIPGEMHGKWENMEWCEHKAVE 597


>pir||B71095 hypothetical protein PH1023 - Pyrococcus horikoshii
           >gi|3257437|dbj|BAA30120.1| (AP000004) 598aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 598
           
 Score = 1114 bits (2850), Expect = 0.0
 Identities = 520/594 (87%), Positives = 568/594 (95%)

Query: 1   MFMKFTYHFHAYQPGDIIYVHDGSGWDPIKYSERLSPVALEIREEEVKGRNWTRAMIKAY 60
           MFMKF YHFHAYQPGDIIYVHDGSGWDPIKYSERLSPVAL IREEEVKGRNWTR MIKAY
Sbjct: 1   MFMKFGYHFHAYQPGDIIYVHDGSGWDPIKYSERLSPVALTIREEEVKGRNWTRTMIKAY 60

Query: 61  EYVDDTLKMLDKGSVSVDFEPFTLYMILKYKPRIYGEIVETLETQVEPTPTVPFHPIMPH 120
           EYVDDTL+ML++GSVSVDFEPFTLYMILKYKP+IYGEIVETL T VEP  TVPFHPIMPH
Sbjct: 61  EYVDDTLRMLNEGSVSVDFEPFTLYMILKYKPKIYGEIVETLGTHVEPAVTVPFHPIMPH 120

Query: 121 LSVFEQEILAKVSFDFYKPFIARKEVVPFWLPENVITKQTAKIIAEATDKDVIFLLDERQ 180
           LS+FEQEILAK++FDFY+PFIARK+VVPFWLPEN+ITKQTA+I+AE+TDKDVIFLLDERQ
Sbjct: 121 LSIFEQEILAKIAFDFYRPFIARKDVVPFWLPENLITKQTARIVAESTDKDVIFLLDERQ 180

Query: 181 FIGVNIPQAKFSCNKYLCNGKSAFVFGRVHTISDAFAFNTLDVDGLTRAVAEGCIDVFKE 240
           F+GVNIPQA+FSCNKYLC+GKSAFVFGRVHTISDAFAFNTLDV+GLTRAVAEGCIDVFKE
Sbjct: 181 FVGVNIPQARFSCNKYLCDGKSAFVFGRVHTISDAFAFNTLDVEGLTRAVAEGCIDVFKE 240

Query: 241 KEGVEYLVFLSSDLESLVANPKQLDKFLNWIDKLKERGVEIVSVGEFVRRKVNDTYRKIP 300
            +G+EYLVFLSSDLESLVANP+QLD+FL W+D+L++RGVEIV+V EFVRRK    Y+ +P
Sbjct: 241 NQGIEYLVFLSSDLESLVANPEQLDRFLEWVDRLRKRGVEIVNVAEFVRRKRRGEYKSLP 300

Query: 301 GECSESFRINVKDYSSWSDYFDLSVDGRTGDMRWTGIRREDNLVINRVYKGRKVSQLWKY 360
           GECSESFRINVKDYSSWSDYFDLS+DGRT D RWTGIRREDNLVINR+YKG+KVSQLWKY
Sbjct: 301 GECSESFRINVKDYSSWSDYFDLSLDGRTSDTRWTGIRREDNLVINRMYKGKKVSQLWKY 360

Query: 361 AFMKLFRELNRTIRFGVIDMLRTNGVEDIEKIKEFLVRYARIFFKEHYEYFELDTSVDYV 420
           AFMKLFRELNRTIRFGVID+L+  GV+D+E +KEFLVRYARIFFKEHYEYFELDTSVDYV
Sbjct: 361 AFMKLFRELNRTIRFGVIDILKGQGVKDVEAVKEFLVRYARIFFKEHYEYFELDTSVDYV 420

Query: 421 IEPIKDVDPAIALKLGRIYYLMLLSNHSCPRFWENVDTRVTFGNVAVISKALIELMELYL 480
           +EPI +VDP+IALKLGRIYYLMLL+NHSCPRFWEN+DTRVTFGNVA ISKALIELMELY+
Sbjct: 421 MEPISEVDPSIALKLGRIYYLMLLANHSCPRFWENIDTRVTFGNVATISKALIELMELYM 480

Query: 481 EENRERANYIFLEYMKLLAFPQLYYDYDLFRLKGLEGWETTEKAWFDSLRSEVPNSKYNV 540
           EENR+RANYIFLEYMKLLAFPQLYYDYDLFRLKGLEGWET+E+AWFDSL+SEVPNS+YNV
Sbjct: 481 EENRDRANYIFLEYMKLLAFPQLYYDYDLFRLKGLEGWETSEEAWFDSLKSEVPNSRYNV 540

Query: 541 ITRAALYVGKRDLPDEMKEVIEILYDLDHAVPDTGHIPGEMHGKWENMEWCEHK 594
           ITRA+LYVGKRDLPDEMKEVIEILYDL  AVPDTGHIPGEMHGKWEN  WCEHK
Sbjct: 541 ITRASLYVGKRDLPDEMKEVIEILYDLKEAVPDTGHIPGEMHGKWENPNWCEHK 594


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.427 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228014423
Number of Sequences: 2977
Number of extensions: 9799861
Number of successful extensions: 24674
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24671
Number of HSP's gapped (non-prelim): 2
length of query: 597
length of database: 189,106,746
effective HSP length: 54
effective length of query: 543
effective length of database: 156,788,448
effective search space: 85136127264
effective search space used: 85136127264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 168 (69.9 bits)