BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0649 (PAB0649) DE:Hypothetical protein
         (103 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75071 hypothetical protein PAB0649 - Pyrococcus abyssi (st...   198  9e-51
pir||C71094 hypothetical protein PH1016 - Pyrococcus horikoshii ...   111  2e-24

>pir||E75071 hypothetical protein PAB0649 - Pyrococcus abyssi (strain Orsay)
           >gi|5458386|emb|CAB49874.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 103
           
 Score =  198 bits (499), Expect = 9e-51
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MKEIIIVVPRKRFKELKNVNIAELIQRNLEKAEITLEAEYINYLLEKRARLLEKLSDMEG 60
           MKEIIIVVPRKRFKELKNVNIAELIQRNLEKAEITLEAEYINYLLEKRARLLEKLSDMEG
Sbjct: 1   MKEIIIVVPRKRFKELKNVNIAELIQRNLEKAEITLEAEYINYLLEKRARLLEKLSDMEG 60

Query: 61  KIEELRSYYNKVLQDNLLMKSERERLNKENSTLRRELKSKVNS 103
           KIEELRSYYNKVLQDNLLMKSERERLNKENSTLRRELKSKVNS
Sbjct: 61  KIEELRSYYNKVLQDNLLMKSERERLNKENSTLRRELKSKVNS 103


>pir||C71094 hypothetical protein PH1016 - Pyrococcus horikoshii
           >gi|3257430|dbj|BAA30113.1| (AP000004) 115aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 115
           
 Score =  111 bits (274), Expect = 2e-24
 Identities = 55/97 (56%), Positives = 72/97 (73%)

Query: 2   KEIIIVVPRKRFKELKNVNIAELIQRNLEKAEITLEAEYINYLLEKRARLLEKLSDMEGK 61
           +EI I+VPR +FKELK  +I +LI  NL+    TL AEY  YLLEKR +L+EKL++ME K
Sbjct: 15  EEITIIVPRDKFKELKRSDIKKLITDNLDNVRETLIAEYEEYLLEKREKLIEKLNEMESK 74

Query: 62  IEELRSYYNKVLQDNLLMKSERERLNKENSTLRRELK 98
           I ELR YY K L+DN ++K+ERERL +EN  L++ LK
Sbjct: 75  IAELRKYYEKALKDNEILKTERERLKRENEELKKMLK 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.132    0.329 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30886643
Number of Sequences: 2977
Number of extensions: 1098260
Number of successful extensions: 7608
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7606
Number of HSP's gapped (non-prelim): 2
length of query: 103
length of database: 189,106,746
effective HSP length: 62
effective length of query: 41
effective length of database: 152,000,552
effective search space: 6232022632
effective search space used: 6232022632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 158 (66.0 bits)