BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0652 (pab0652) DE:transcriptional regulatory protein, AsnC
family
         (162 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75071 transcription regulatory protein, asnc family PAB065...   311  3e-84
pir||H71093 hypothetical protein PH1013 - Pyrococcus horikoshii ...   277  6e-74
pir||A75106 transcription regulatory protein, asnc family PAB193...    68  6e-11

>pir||H75071 transcription regulatory protein, asnc family PAB0652 - Pyrococcus
           abyssi (strain Orsay) >gi|5458389|emb|CAB49877.1|
           (AJ248286) transcriptional regulatory protein, AsnC
           family [Pyrococcus abyssi]
           Length = 162
           
 Score =  311 bits (788), Expect = 3e-84
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MTNASLDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGIIEKYTIIVG 60
           MTNASLDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGIIEKYTIIVG
Sbjct: 1   MTNASLDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGIIEKYTIIVG 60

Query: 61  EPIKPRKLALVVLEIDMPIIEDFLERYIEYVTKTLSGFSEVLFVAKSGKEKIVALVGGES 120
           EPIKPRKLALVVLEIDMPIIEDFLERYIEYVTKTLSGFSEVLFVAKSGKEKIVALVGGES
Sbjct: 61  EPIKPRKLALVVLEIDMPIIEDFLERYIEYVTKTLSGFSEVLFVAKSGKEKIVALVGGES 120

Query: 121 EESLLKFIEDNIESIPTLRNVMVFPISEIKKGDEIAGFLAEV 162
           EESLLKFIEDNIESIPTLRNVMVFPISEIKKGDEIAGFLAEV
Sbjct: 121 EESLLKFIEDNIESIPTLRNVMVFPISEIKKGDEIAGFLAEV 162


>pir||H71093 hypothetical protein PH1013 - Pyrococcus horikoshii
           >gi|3257427|dbj|BAA30110.1| (AP000004) 162aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 162
           
 Score =  277 bits (700), Expect = 6e-74
 Identities = 140/162 (86%), Positives = 152/162 (93%)

Query: 1   MTNASLDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGIIEKYTIIVG 60
           M +  LDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERG+IEKYTII+G
Sbjct: 1   MISTPLDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGVIEKYTIILG 60

Query: 61  EPIKPRKLALVVLEIDMPIIEDFLERYIEYVTKTLSGFSEVLFVAKSGKEKIVALVGGES 120
           EPI+PR+LALVVLE+D PIIEDFL+RY+EYVTKTLSGF EVLFVAKSGKEKIVALVGGE 
Sbjct: 61  EPIRPRELALVVLEVDKPIIEDFLDRYMEYVTKTLSGFPEVLFVAKSGKEKIVALVGGED 120

Query: 121 EESLLKFIEDNIESIPTLRNVMVFPISEIKKGDEIAGFLAEV 162
            + LLKFIE+NIESIPTLR+V V PISEIKKGDEI+GFLAEV
Sbjct: 121 RDKLLKFIEENIESIPTLRSVQVLPISEIKKGDEISGFLAEV 162


>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
           abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
           (AJ248285) transcriptional regulatory protein, AsnC
           family [Pyrococcus abyssi]
           Length = 151
           
 Score = 67.9 bits (163), Expect = 6e-11
 Identities = 48/134 (35%), Positives = 76/134 (55%), Gaps = 11/134 (8%)

Query: 5   SLDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGIIEKYTIIVG-EPI 63
           SLD++DR I+K+L+KD +  + EIS      EST+H RIKKL+E G+I K+T IV  E +
Sbjct: 4   SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63

Query: 64  KPRKLALVVLEIDMPIIEDFLERYIEYVTKTLSGFSEVLFVAK-SGKEKIVALVGGESEE 122
               LA +++++          +Y E V   L  + E++ V + +G   +V  +  ++ E
Sbjct: 64  GYSMLAFILIKVK-------AGKYAE-VASNLVKYEEIMEVYETTGDYDMVVKIRTKNSE 115

Query: 123 SLLKFIEDNIESIP 136
            L  F+ D I SIP
Sbjct: 116 ELNSFL-DVIGSIP 128


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.366 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52485329
Number of Sequences: 2977
Number of extensions: 2002004
Number of successful extensions: 7287
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7285
Number of HSP's gapped (non-prelim): 3
length of query: 162
length of database: 189,106,746
effective HSP length: 58
effective length of query: 104
effective length of database: 154,394,500
effective search space: 16057028000
effective search space used: 16057028000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)