BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0654 (PAB0654) DE:Hypothetical protein
(138 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75072 hypothetical protein PAB0654 - Pyrococcus abyssi (st... 279 8e-75
pir||E71093 hypothetical protein PH1010 - Pyrococcus horikoshii ... 267 4e-71
gb|AAK41304.1| Conserved hypothetical protein [Sulfolobus solfat... 91 6e-18
pir||E72558 hypothetical protein APE1751 - Aeropyrum pernix (str... 90 8e-18
sp|Q58959|YF64_METJA HYPOTHETICAL PROTEIN MJ1564 >gi|2128940|pir... 85 3e-16
gi|11498991 conserved hypothetical protein [Archaeoglobus fulgid... 85 4e-16
>pir||D75072 hypothetical protein PAB0654 - Pyrococcus abyssi (strain Orsay)
>gi|5458393|emb|CAB49881.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 138
Score = 279 bits (707), Expect = 8e-75
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MMAMFEEVEVEAYVYPTEDINKVKKAMLNLVPGLKFEAFDKGEYMILVGKTRDKRALQRL 60
MMAMFEEVEVEAYVYPTEDINKVKKAMLNLVPGLKFEAFDKGEYMILVGKTRDKRALQRL
Sbjct: 1 MMAMFEEVEVEAYVYPTEDINKVKKAMLNLVPGLKFEAFDKGEYMILVGKTRDKRALQRL 60
Query: 61 YELFRGQQILDTARMMLEEGYFGEEIIIKVHKQVAYAGKVNFNEESPLGPITITIRTKEP 120
YELFRGQQILDTARMMLEEGYFGEEIIIKVHKQVAYAGKVNFNEESPLGPITITIRTKEP
Sbjct: 61 YELFRGQQILDTARMMLEEGYFGEEIIIKVHKQVAYAGKVNFNEESPLGPITITIRTKEP 120
Query: 121 QKLMKWLAPRTKDGVPIE 138
QKLMKWLAPRTKDGVPIE
Sbjct: 121 QKLMKWLAPRTKDGVPIE 138
>pir||E71093 hypothetical protein PH1010 - Pyrococcus horikoshii
>gi|3257424|dbj|BAA30107.1| (AP000004) 138aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 138
Score = 267 bits (675), Expect = 4e-71
Identities = 129/138 (93%), Positives = 135/138 (97%)
Query: 1 MMAMFEEVEVEAYVYPTEDINKVKKAMLNLVPGLKFEAFDKGEYMILVGKTRDKRALQRL 60
MM MFEEVEVEAYVYPTEDI KVKKAMLNL+PGL+FEAFDKGEY+ILVG+T+DKRALQRL
Sbjct: 1 MMTMFEEVEVEAYVYPTEDIRKVKKAMLNLIPGLQFEAFDKGEYVILVGRTKDKRALQRL 60
Query: 61 YELFRGQQILDTARMMLEEGYFGEEIIIKVHKQVAYAGKVNFNEESPLGPITITIRTKEP 120
YELFRGQQILDTARMMLEEGYFGEEIIIKVHKQVAY GKVNFNE+SPLGPITITIRTKEP
Sbjct: 61 YELFRGQQILDTARMMLEEGYFGEEIIIKVHKQVAYVGKVNFNEDSPLGPITITIRTKEP 120
Query: 121 QKLMKWLAPRTKDGVPIE 138
QKLMKWLAPRTKDGVPIE
Sbjct: 121 QKLMKWLAPRTKDGVPIE 138
>gb|AAK41304.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 145
Score = 90.9 bits (222), Expect = 6e-18
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 7 EVEVEAYVYPTEDINKVKKAMLNLVPGLKFEAFDKGEYMILVGKTRDKRALQRLYELFRG 66
+V V A V P+ED+NKV A+ N K +G ILV + R ++L + + + R
Sbjct: 3 KVMVVAEVRPSEDVNKVLSAISNFFDFEKMNTRKEGIIDILVLEARTLKSLLKFHRVLRN 62
Query: 67 QQILDTARMMLEEGYFGEEIIIKVHKQVAYAGKVNF---NEESPLGPITITIRTKEPQKL 123
++ILD+AR L +G G I +HKQ A G ++F ++ESPLG I I + P+++
Sbjct: 63 ERILDSARKYLMKGIEGNTIAFMIHKQAAAVGVLSFVDSDKESPLGAIKFYIEYQNPKEI 122
Query: 124 MKWLAPRTKDGVPI 137
+ WLAP+T GVP+
Sbjct: 123 VDWLAPKTAHGVPL 136
>pir||E72558 hypothetical protein APE1751 - Aeropyrum pernix (strain K1)
>gi|5105441|dbj|BAA80754.1| (AP000062) 150aa long
hypothetical protein [Aeropyrum pernix]
Length = 150
Score = 90.5 bits (221), Expect = 8e-18
Identities = 55/136 (40%), Positives = 83/136 (60%), Gaps = 8/136 (5%)
Query: 8 VEVEAYVYPTEDINKVKKAMLNLVP--GLKFEAFDKGEYMILVGKTRDKRALQRLYELFR 65
+ VEA V PTED KV KA+ N+V ++FE E ILVG++ +L RL+ + R
Sbjct: 10 ITVEAEVRPTEDREKVLKAVRNVVEPESVRFEKIGSTE--ILVGESSTLASLSRLHSILR 67
Query: 66 GQQILDTARMMLEEGYFG-EEIIIKVHKQVAYAGKVNF---NEESPLGPITITIRTKEPQ 121
++ILD AR +++G G + + I +HKQ AY G+++F + ESP+G I ITI +
Sbjct: 68 AERILDAARGAMKKGVQGADRMTIHLHKQAAYKGRLSFVSSDHESPMGAIRITIEHPNVR 127
Query: 122 KLMKWLAPRTKDGVPI 137
+++ WLAP T G P+
Sbjct: 128 EVIDWLAPPTVRGRPV 143
>sp|Q58959|YF64_METJA HYPOTHETICAL PROTEIN MJ1564 >gi|2128940|pir||C64495 hypothetical
protein MJ1564 - Methanococcus jannaschii
>gi|1500458|gb|AAB99591.1| (U67597) M. jannaschii
predicted coding region MJ1564 [Methanococcus
jannaschii]
Length = 170
Score = 85.4 bits (208), Expect = 3e-16
Identities = 58/135 (42%), Positives = 81/135 (59%), Gaps = 8/135 (5%)
Query: 7 EVEVEAYVYPTEDINKVKKAMLNLVPGLKFEAFDK-GEYMILVGKTRDKRALQRLYELFR 65
EV ++A V PTED KVKKA+LN+ P K +K E+ GKT+ ++++L EL R
Sbjct: 2 EVIIKAKVKPTEDKYKVKKAILNIFPKAKLTFIEKDNEFGEWEGKTK---SVEKLKELLR 58
Query: 66 GQQILDTARMMLEEGYFGEEIIIKVHKQVAYAGKVNFNEESPLGPITITIRTKEPQ---K 122
Q ILD ARM+LE+G ++KQ AY G VNF+ ++ G I + I E + K
Sbjct: 59 SQSILDAARMVLEKGMTENATKFYLNKQAAYVGAVNFDIDTH-GGIFVKILADENEDIMK 117
Query: 123 LMKWLAPRTKDGVPI 137
++K +APRTK GV I
Sbjct: 118 IIKDIAPRTKGGVII 132
>gi|11498991 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483119|pir||B69424 conserved hypothetical protein
AF1395 - Archaeoglobus fulgidus
>gi|2649179|gb|AAB89852.1| (AE001008) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 323
Score = 84.7 bits (206), Expect = 4e-16
Identities = 49/135 (36%), Positives = 80/135 (58%), Gaps = 9/135 (6%)
Query: 7 EVEVEAYVYPTEDINKVKKAMLNLVPGLKFEAFDKGEYMILVGKTRDKRALQRLYELFRG 66
E+E+ ++PTE +KV KA+ N+ P + E ++GE + G+ +L R EL R
Sbjct: 190 EIEIRTKIHPTESEDKVLKAIRNIFPDAEIEISEEGE---VYGRAY---SLDRFRELLRK 243
Query: 67 QQILDTARMMLEEGYFGEEIIIKVHKQVAYAGKVNF-NEESPLGPITITIRTKEP--QKL 123
Q+ILDTAR + +G G+E+ I ++KQ A ++NF +E + L PI +T R +
Sbjct: 244 QRILDTARSEILKGRNGKEVTIYLNKQTATVSRINFCDENAVLSPIKVTFRLNNIPFSRF 303
Query: 124 MKWLAPRTKDGVPIE 138
+ ++AP TKDG P++
Sbjct: 304 LDYIAPETKDGRPVK 318
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49822119
Number of Sequences: 2977
Number of extensions: 1888417
Number of successful extensions: 3978
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3968
Number of HSP's gapped (non-prelim): 6
length of query: 138
length of database: 189,106,746
effective HSP length: 54
effective length of query: 84
effective length of database: 156,788,448
effective search space: 13170229632
effective search space used: 13170229632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)