BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0655 (PAB0655) DE:Hypothetical protein
         (431 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75072 hypothetical protein PAB0655 - Pyrococcus abyssi (st...   826  0.0
pir||H71092 hypothetical protein PH1005 - Pyrococcus horikoshii ...   564  e-160

>pir||H75072 hypothetical protein PAB0655 - Pyrococcus abyssi (strain Orsay)
           >gi|5458397|emb|CAB49885.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 431
           
 Score =  826 bits (2111), Expect = 0.0
 Identities = 431/431 (100%), Positives = 431/431 (100%)

Query: 1   MSKRDVILRHSVASIIALALFGGSRFLYNIIISRKFGLNVLGSVNSLISQAFLIAGFLAF 60
           MSKRDVILRHSVASIIALALFGGSRFLYNIIISRKFGLNVLGSVNSLISQAFLIAGFLAF
Sbjct: 1   MSKRDVILRHSVASIIALALFGGSRFLYNIIISRKFGLNVLGSVNSLISQAFLIAGFLAF 60

Query: 61  FSVGLGKYTAEFLGRGEKEKVKSIASLSFMSPLLGLSLIPLNPGLAILATLRAIQLTLRS 120
           FSVGLGKYTAEFLGRGEKEKVKSIASLSFMSPLLGLSLIPLNPGLAILATLRAIQLTLRS
Sbjct: 61  FSVGLGKYTAEFLGRGEKEKVKSIASLSFMSPLLGLSLIPLNPGLAILATLRAIQLTLRS 120

Query: 121 FIYGMHKGEFYAYLVFLGFLGFLLGFAFDDPLAPYYLLLGAVSVAGVLLLLKWNLLGRPR 180
           FIYGMHKGEFYAYLVFLGFLGFLLGFAFDDPLAPYYLLLGAVSVAGVLLLLKWNLLGRPR
Sbjct: 121 FIYGMHKGEFYAYLVFLGFLGFLLGFAFDDPLAPYYLLLGAVSVAGVLLLLKWNLLGRPR 180

Query: 181 KGEGIILLRYSWWAFLGSIAGIFLIQGPYFMTEKLSSQEEAGLISAILSTSFLLSYLPQI 240
           KGEGIILLRYSWWAFLGSIAGIFLIQGPYFMTEKLSSQEEAGLISAILSTSFLLSYLPQI
Sbjct: 181 KGEGIILLRYSWWAFLGSIAGIFLIQGPYFMTEKLSSQEEAGLISAILSTSFLLSYLPQI 240

Query: 241 VQSAIVPIFAYDFGKGELSYSRKLATLAVEVLSTLTGITVFLMLIFQPLIEGIFRVKFGS 300
           VQSAIVPIFAYDFGKGELSYSRKLATLAVEVLSTLTGITVFLMLIFQPLIEGIFRVKFGS
Sbjct: 241 VQSAIVPIFAYDFGKGELSYSRKLATLAVEVLSTLTGITVFLMLIFQPLIEGIFRVKFGS 300

Query: 301 LLLPALIAVEIYIAYNPLINLLSATKFIKNSALYALTGSLVSLILWIALIPTHGSFGTLI 360
           LLLPALIAVEIYIAYNPLINLLSATKFIKNSALYALTGSLVSLILWIALIPTHGSFGTLI
Sbjct: 301 LLLPALIAVEIYIAYNPLINLLSATKFIKNSALYALTGSLVSLILWIALIPTHGSFGTLI 360

Query: 361 GLVIGYSTVFILVLLKVHKEFAISFNVALTLVLAIGLQVLGKVTNPILGLLIFTIIKGKR 420
           GLVIGYSTVFILVLLKVHKEFAISFNVALTLVLAIGLQVLGKVTNPILGLLIFTIIKGKR
Sbjct: 361 GLVIGYSTVFILVLLKVHKEFAISFNVALTLVLAIGLQVLGKVTNPILGLLIFTIIKGKR 420

Query: 421 IMLFLRDIRSL 431
           IMLFLRDIRSL
Sbjct: 421 IMLFLRDIRSL 431


>pir||H71092 hypothetical protein PH1005 - Pyrococcus horikoshii
           >gi|3257419|dbj|BAA30102.1| (AP000004) 432aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 432
           
 Score =  564 bits (1439), Expect = e-160
 Identities = 279/431 (64%), Positives = 354/431 (81%), Gaps = 1/431 (0%)

Query: 1   MSKRDVILRHSVASIIALALFGGSRFLYNIIISRKFGLNVLGSVNSLISQAFLIAGFLAF 60
           M+++ VI+RHS+AS+IALALFGGSRFLYN+IISRKFG+ VLG +NSLISQAF +AGFLAF
Sbjct: 3   MNRKRVIVRHSIASVIALALFGGSRFLYNVIISRKFGVEVLGEINSLISQAFFLAGFLAF 62

Query: 61  FSVGLGKYTAEFLGRGEKEKVKSIASLSFMSPLLGLSLIPLNPGLAILATLRAIQLTLRS 120
           FS+G+GKYTAEFLGRGEK ++KSIA +SF+SPLLGL L+P+N  LA+L+ LRAIQLT RS
Sbjct: 63  FSIGVGKYTAEFLGRGEKNRIKSIAGISFLSPLLGLVLMPINFSLALLSILRAIQLTFRS 122

Query: 121 FIYGMHKGEFYAYLVFLGFLGFLLGFAFDDPLAPYYLLLGAVSVAGVLLLLKWNLLGRPR 180
           FIYG+H+GE YAY + LGF  FLLGF   DPL PYYL L  +SV GV+ L +  L+G+PR
Sbjct: 123 FIYGLHRGEVYAYSIMLGFTLFLLGF-LGDPLLPYYLFLATISVFGVVYLSREKLIGKPR 181

Query: 181 KGEGIILLRYSWWAFLGSIAGIFLIQGPYFMTEKLSSQEEAGLISAILSTSFLLSYLPQI 240
             + I+L +YS WAFLGS +GIFLIQGPYF+T+ LS  E AG++SAILST+FLLSYLPQ+
Sbjct: 182 INDFILLAKYSVWAFLGSASGIFLIQGPYFLTDILSGSESAGIVSAILSTAFLLSYLPQV 241

Query: 241 VQSAIVPIFAYDFGKGELSYSRKLATLAVEVLSTLTGITVFLMLIFQPLIEGIFRVKFGS 300
           VQSAIVPIFAYD+GKG +  S++LA ++VE+LS  T I VF +L FQP+IE IFR+K G+
Sbjct: 242 VQSAIVPIFAYDYGKGSMETSKRLAEVSVEMLSIATAIIVFAILAFQPIIERIFRLKLGT 301

Query: 301 LLLPALIAVEIYIAYNPLINLLSATKFIKNSALYALTGSLVSLILWIALIPTHGSFGTLI 360
           LLLPALI VEIY++YNPLINLLSATKFI++S++YA++GS+VSLI W+ LIP HG+ GTLI
Sbjct: 302 LLLPALIGVEIYVSYNPLINLLSATKFIRSSSIYAISGSIVSLISWLLLIPKHGALGTLI 361

Query: 361 GLVIGYSTVFILVLLKVHKEFAISFNVALTLVLAIGLQVLGKVTNPILGLLIFTIIKGKR 420
           GL++GYST+F L L K  KEF +   + + L LAI LQ+L K  +PI+ ++ + II+ ++
Sbjct: 362 GLIMGYSTIFALTLAKTVKEFGVKPRITVPLFLAIILQLLSKFISPIILVIAYLIIEWRK 421

Query: 421 IMLFLRDIRSL 431
           I LFL DIRSL
Sbjct: 422 IRLFLHDIRSL 432


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.147    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141592509
Number of Sequences: 2977
Number of extensions: 5813044
Number of successful extensions: 19085
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19082
Number of HSP's gapped (non-prelim): 2
length of query: 431
length of database: 189,106,746
effective HSP length: 54
effective length of query: 377
effective length of database: 156,788,448
effective search space: 59109244896
effective search space used: 59109244896
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 166 (69.1 bits)