BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0658 (PAB0658) DE:Hypothetical protein
(329 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75073 hypothetical protein PAB0658 - Pyrococcus abyssi (st... 637 0.0
sp|O58728|YA00_PYRHO HYPOTHETICAL PROTEIN PH1000 >gi|7518929|pir... 491 e-138
sp|O59276|YF71_PYRHO HYPOTHETICAL PROTEIN PH1571 >gi|7519197|pir... 196 2e-49
pir||G75178 membrane protein PAB1962 - Pyrococcus abyssi (strain... 194 1e-48
sp|O27279|YC11_METTH HYPOTHETICAL PROTEIN MTH1211 >gi|7482098|pi... 124 1e-27
sp|Q58578|YB77_METJA HYPOTHETICAL PROTEIN MJ1177 >gi|2128709|pir... 109 3e-23
pir||D83442 conserved hypothetical protein PA1625 [imported] - P... 107 2e-22
sp|O66948|Y740_AQUAE HYPOTHETICAL PROTEIN AQ_740 >gi|7451543|pir... 102 6e-21
pir||F83313 conserved hypothetical protein PA2651 [imported] - P... 91 1e-17
dbj|BAB06327.1| (AP001516) unknown conserved protein [Bacillus h... 87 3e-16
gi|11499389 conserved hypothetical protein [Archaeoglobus fulgid... 83 4e-15
sp|Q04454|YCT2_BACFI HYPOTHETICAL 43.4 KDA PROTEIN IN CTAF 3'REG... 81 2e-14
pir||C82300 conserved hypothetical protein VC0624 [imported] - V... 80 4e-14
sp|Q9ZLR4|Y567_HELPJ HYPOTHETICAL PROTEIN HP0567/JHP0514 >gi|746... 78 2e-13
pir||H81280 acid membrane antigen A Cj1363 [imported] - Campylob... 74 2e-12
sp|O25291|Y567_HELPY HYPOTHETICAL PROTEIN HP0567 >gi|7465092|pir... 73 6e-12
sp|P77175|YDIK_ECOLI HYPOTHETICAL 39.8 KDA PROTEIN IN LPP-AROD I... 71 2e-11
sp|O32095|YUEF_BACSU HYPOTHETICAL 40.9 KDA PROTEIN IN DEGQ-ALD I... 71 2e-11
>pir||E75073 hypothetical protein PAB0658 - Pyrococcus abyssi (strain Orsay)
>gi|5458402|emb|CAB49890.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 329
Score = 637 bits (1624), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60
MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL
Sbjct: 1 MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60
Query: 61 TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE 120
TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE
Sbjct: 61 TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE 120
Query: 121 IGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAIEELLSFRDERLVRIVKRGNVTLQ 180
IGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAIEELLSFRDERLVRIVKRGNVTLQ
Sbjct: 121 IGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAIEELLSFRDERLVRIVKRGNVTLQ 180
Query: 181 ALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWLAGAFY 240
ALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWLAGAFY
Sbjct: 181 ALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWLAGAFY 240
Query: 241 LIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWGLGLKG 300
LIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWGLGLKG
Sbjct: 241 LIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWGLGLKG 300
Query: 301 LIIGPIVLNVAIEMLREWKIQNKARGSQS 329
LIIGPIVLNVAIEMLREWKIQNKARGSQS
Sbjct: 301 LIIGPIVLNVAIEMLREWKIQNKARGSQS 329
>sp|O58728|YA00_PYRHO HYPOTHETICAL PROTEIN PH1000 >gi|7518929|pir||C71092 hypothetical
protein PH1000 - Pyrococcus horikoshii
>gi|3257414|dbj|BAA30097.1| (AP000004) 355aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 355
Score = 491 bits (1250), Expect = e-138
Identities = 234/328 (71%), Positives = 284/328 (86%), Gaps = 1/328 (0%)
Query: 1 MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60
MEV++VV +I++ ++ LA+K I+PFFSPLFFAFITAY LYP+H+K+ ER K SA+ L
Sbjct: 28 MEVSRVVTWIIIITLVALAIKTILPFFSPLFFAFITAYALYPLHIKLKERIGSKNSAILL 87
Query: 61 TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE 120
TL LLLGAL++LLIL+YTL PV+ QAY+YL+++E + ++IP +P + SSL+ +D+ +E
Sbjct: 88 TLFLLLGALMILLILVYTLTPVIGQAYDYLTNLEKIKINIPLVPKSVISSLEGVIDEFIE 147
Query: 121 IGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAIEELLSFRDERLVRIVKRGNVTLQ 180
GK YLVS+TFSVPKYLLQV+VYLTFVYFFLVK K EL++F DE+L+RI++RGN+TLQ
Sbjct: 148 RGKGYLVSLTFSVPKYLLQVIVYLTFVYFFLVKEKEARELITFEDEKLIRIIERGNLTLQ 207
Query: 181 ALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWLAGAFY 240
ALIR WLLLNI KGILMT+GFL FKVSN+PTAILAG+LTVLFSF+PLFEGWMIWLAGAFY
Sbjct: 208 ALIRVWLLLNIVKGILMTLGFLIFKVSNLPTAILAGLLTVLFSFIPLFEGWMIWLAGAFY 267
Query: 241 LIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWGLGLKG 300
L+K G I+ G+GLA+YGF LVSPLPDFTIRPKLVAREA F++VLVLIGMIGGTWGLGLKG
Sbjct: 268 LVKQGHIIAGIGLAVYGFTLVSPLPDFTIRPKLVAREAEFNDVLVLIGMIGGTWGLGLKG 327
Query: 301 LIIGPIVLNVAIEMLREWK-IQNKARGS 327
LIIGPIVLNVAIEMLREWK +Q K S
Sbjct: 328 LIIGPIVLNVAIEMLREWKNVQAKTERS 355
>sp|O59276|YF71_PYRHO HYPOTHETICAL PROTEIN PH1571 >gi|7519197|pir||C71035 hypothetical
protein PH1571 - Pyrococcus horikoshii
>gi|3258000|dbj|BAA30683.1| (AP000006) 341aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 341
Score = 196 bits (494), Expect = 2e-49
Identities = 100/324 (30%), Positives = 180/324 (54%), Gaps = 7/324 (2%)
Query: 1 MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60
+E K+V+ I+L+I+FL + + +P+ F +YI YP H+K+S++ ++ S + L
Sbjct: 4 LEKEKIVWIAIILLIIFLVWETLKDLIAPIVFGMAASYIAYPFHIKLSKKVGKRNSVLIL 63
Query: 61 TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE 120
+ +L + +LI + + + + Y YL S LS +PG ++S E
Sbjct: 64 SGILSIFSLIFFVGVTLWITDTLKNLYNYLDAFFSW-LSTLNVPGFLSSLFDALATSFPE 122
Query: 121 IGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKR----KAIEELLSFRDERL-VRIVKRG 175
+ L+ T S+PK LQ++V+L Y L+ K I ELL + L +++++
Sbjct: 123 KLRSILLQYTLSLPKLALQLIVFLAVFYATLLNADFLAKEIYELLPLTNRELGEKMIEKV 182
Query: 176 NVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWL 235
T+ A+++ WL ++ KGI + +GF FK+SNV +I AG+L ++ +P+ GW++WL
Sbjct: 183 KDTVDAILKTWLFFSVVKGIFLALGFYLFKISNVAGSIAAGVLCIVLELLPVVGGWIMWL 242
Query: 236 AGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWG 295
AGA L++ +L + AIYG + +SP+PD+ ++PK A V+ L+G+ GG
Sbjct: 243 AGAIILLRR-SMLLAIIFAIYGIITISPIPDYFLKPKFAKERAKVSSVVALVGIFGGWIA 301
Query: 296 LGLKGLIIGPIVLNVAIEMLREWK 319
G G+I+GPI + + + ++ W+
Sbjct: 302 FGAVGIILGPIAIGLLLALIDAWR 325
>pir||G75178 membrane protein PAB1962 - Pyrococcus abyssi (strain Orsay)
>gi|5458020|emb|CAB49510.1| (AJ248284) Membrane protein
[Pyrococcus abyssi]
Length = 343
Score = 194 bits (488), Expect = 1e-48
Identities = 104/338 (30%), Positives = 183/338 (53%), Gaps = 12/338 (3%)
Query: 1 MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60
+E K+V+ ++ II+FL + + SP+ F YI YP H+K+S + +K S + L
Sbjct: 6 LEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLL 65
Query: 61 TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE 120
+ LL + ++ + + + + Y YL+ S S+ +P ++S +
Sbjct: 66 SALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLN-VPSFLSSIFDAMATSFPQ 124
Query: 121 IGKDYLVSITFSVPKYLLQVVVYLTFVYFFL-----VKRKAIEELLSFRDERLVRIVKRG 175
+D L+ T S+PK LQ++V+L Y L + R+ E L S E +++++
Sbjct: 125 KLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEKV 184
Query: 176 NVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWL 235
T+ A+++ WL +I KG+ +T+GF F++SNV +I AG+L V+ +P+ GW++WL
Sbjct: 185 RDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMWL 244
Query: 236 AGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWG 295
AGA L K +L L +IYG + +SP+PD+T++ + A+ V+ L+G+ GG
Sbjct: 245 AGAIILWKKSTLL-ALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIA 303
Query: 296 LGLKGLIIGPIVLNVAIEMLREW-----KIQNKARGSQ 328
G G+I+GPI + + + ++ W K +KAR SQ
Sbjct: 304 FGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQ 341
>sp|O27279|YC11_METTH HYPOTHETICAL PROTEIN MTH1211 >gi|7482098|pir||G69028 conserved
hypothetical protein MTH1211 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622321|gb|AAB85700.1| (AE000889) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 334
Score = 124 bits (309), Expect = 1e-27
Identities = 93/329 (28%), Positives = 166/329 (50%), Gaps = 34/329 (10%)
Query: 12 VLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFLTLLLLLGALIL 71
V+ +L L+ V+ P ++ LF + AYI+ PV ++I+ R Y +V + L +++ + L
Sbjct: 16 VMALLLLSAIVVYPLWTMLFLGAVFAYIVRPVALRINRRI--PYLSVSIILAMIVVIMPL 73
Query: 72 LLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPG--DIASSLQETVDKLVEIGKD----- 124
+ IL++T+ ++N A LS S+ +PG ++ S + T+ L + +D
Sbjct: 74 VGILVFTVDSIINSAPSLLSLAGSI-----HVPGAGNLQPSAENTLANLRTVLRDILSGS 128
Query: 125 --YLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAI---------EELLSFRDERLVRIVK 173
Y+V+I SVP LQ+ V+L+ ++F K + EE F + R+
Sbjct: 129 LNYVVAILQSVPMISLQLFVFLSSTFYFARDGKRLVGYIRTLIPEETRPFME----RMAS 184
Query: 174 RGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMI 233
L ++ L +A G++ VGF + P AIL GI+T LF +P+ W
Sbjct: 185 ETERVLLSIFYGHFLTALAIGLMAAVGF---HLLGYPYAILLGIMTGLFQLIPVIGPWAA 241
Query: 234 WLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGT 293
+ + Y G+IL G+ + I+G L + D +RPKL + A+ ++ L+G +GG
Sbjct: 242 YTPLSIYDFVTGNILRGVLVLIFGLFLSTI--DIYLRPKLSGKYADIHPMIFLVGFLGGP 299
Query: 294 WGLGLKGLIIGPIVLNVAIEMLREWKIQN 322
G+ G I+GP+VL +A L +++++
Sbjct: 300 VVWGVAGFIVGPLVLGLAYAALEAYRMES 328
>sp|Q58578|YB77_METJA HYPOTHETICAL PROTEIN MJ1177 >gi|2128709|pir||A64447 hypothetical
protein MJ1177 - Methanococcus jannaschii
>gi|1591804|gb|AAB99180.1| (U67559) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 334
Score = 109 bits (271), Expect = 3e-23
Identities = 81/315 (25%), Positives = 154/315 (48%), Gaps = 14/315 (4%)
Query: 5 KVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFLTLLL 64
K V +++ +L + L +I PF L ++ AY+ PV+ + ++FN+ SA +
Sbjct: 7 KYVRKGVIVGLLIMLLYIIWPFIDVLAYSCAFAYMALPVYNILRKKFNKTISAGLAISIY 66
Query: 65 LLGALILLLILIYTLAPVV-----NQAYEYLSDIESLTLSIPF---IPGD--IASSLQET 114
+L + + + + T ++ Y+++I S+ S I + IA + E
Sbjct: 67 ILPIMTITIYALLTFMEIILSFNTKSIEPYINEILSIYNSFMLERIINNEQIIAKYIDEF 126
Query: 115 VDKLVEIGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAIEELLSFRDERLVRIVKR 174
+ LV ++ + + + K ++ V++LTF YF KA ++SF + ++
Sbjct: 127 IKYLVSQFSGKIIDVGYLIVKVIM--VLFLTF-YFLRDGDKAKNLIISFVPDEYKEKMRI 183
Query: 175 GNVTLQALIRAWLLLNIAKGILMTV-GFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMI 233
L + + ++ I++T+ ++ + + VP A L I+T +F+ +P+ GWM+
Sbjct: 184 YLSYLHDSYKNLFISCVSLSIIITILSYIGYLILGVPYAELFAIITGIFALLPILGGWMV 243
Query: 234 WLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGT 293
+++ A Y D + + IYG + +S PDF IRP LV +E + VLV+I +
Sbjct: 244 YISIAIYFFLIHDYTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVDIHPVLVVIAFLMAP 303
Query: 294 WGLGLKGLIIGPIVL 308
LGL G IGP+V+
Sbjct: 304 LSLGLSGFAIGPLVV 318
>pir||D83442 conserved hypothetical protein PA1625 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947592|gb|AAG05014.1|AE004590_5 (AE004590)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 355
Score = 107 bits (264), Expect = 2e-22
Identities = 90/345 (26%), Positives = 172/345 (49%), Gaps = 41/345 (11%)
Query: 4 NKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFN--EKYSAVFLT 61
++++ V++ +L +L V+ PF+S LF+A + A+ +P+ ++ E +A LT
Sbjct: 5 DRLLLRVLLFGLLGASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLT 64
Query: 62 LLLLLGALILLLILIYTLAPVVNQAYEYLSDIE--------SLTLSIPFIPGDIASSLQE 113
L ++ + L+ L + LA V E L +++ S +P I GD +
Sbjct: 65 LGWIVLVALPLIWLGFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLI-GDRLIGWWD 123
Query: 114 TVDK------------LVEIGKDYLVSITFSVPKYLLQVVVYLTFVYFFL--------VK 153
++D+ + E+G ++L++ + + +L++V+ L ++FF +
Sbjct: 124 SIDQQGVAFFYVLKPYVGEVG-NWLLARSAKIGGGILELVLSLILIFFFYRDGPRLESIV 182
Query: 154 RKAIEELLSFRDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAI 213
+A+E L+ R E +V T+Q ++ + A+ +L +GF+ ++ VP A+
Sbjct: 183 HRALERLIGNRAEHYRDLVAG---TVQRVVNGVIGTAAAQALLAWIGFM---IAGVPGAM 236
Query: 214 LAGILTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKL 273
L G+LT S L ++W +L GD G+ L ++GF ++S + D ++P L
Sbjct: 237 LLGLLTFACSL--LMVPPLVWGPATAWLFFKGDYGHGVFLGLWGFFIISGV-DNILKPYL 293
Query: 274 VAREANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREW 318
++R N V+VL+G+ GG G GL +GPI+L VA +L +W
Sbjct: 294 ISRGGNLPLVVVLLGVFGGLLAFGFMGLFLGPILLAVAYNLLSDW 338
>sp|O66948|Y740_AQUAE HYPOTHETICAL PROTEIN AQ_740 >gi|7451543|pir||A70365 conserved
hypothetical protein aq_740 - Aquifex aeolicus
>gi|2983326|gb|AAC06916.1| (AE000705) hypothetical
protein [Aquifex aeolicus]
Length = 353
Score = 102 bits (252), Expect = 6e-21
Identities = 79/342 (23%), Positives = 159/342 (46%), Gaps = 33/342 (9%)
Query: 7 VFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFLTLLLLL 66
V+ L LFL L ++ PFF+P+ +A + +LYP++ I + + A FL + ++L
Sbjct: 8 VYLFFFLSFLFLFLYLLQPFFNPIVWAIVFGIVLYPLYGFIKRKLKSENLAAFLVIFIVL 67
Query: 67 GALILLL----------ILIYTLAPVVNQAYEYLSDIESLTLSIPFI------------- 103
A+++ I+++++ V ++D+ + IPF+
Sbjct: 68 VAIVIPFTIFAVITAQQIIVFSIKVVNFVQTHSVNDLINSLKEIPFLKEKRESLEPLLNY 127
Query: 104 --PGDIASSLQETVDKLVEIGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVK-RKAIEEL 160
+ +L ++ ++ D L S ++ L V V+L ++F L K ++E+
Sbjct: 128 LQSEEFRRALINALNSILTFVGDRLRSYVYTAGTSLFHVFVFLLTLFFILRDGEKVLKEI 187
Query: 161 LS---FRDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGI 217
++ + E L I+K T+ A+I + +A+ I+ GF+ + ++ V A++ +
Sbjct: 188 INSIPMKREDLEEILKTIYRTVLAVIYGTVGTAVAQSIM---GFIGYSLAGVEFALIWAL 244
Query: 218 LTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVARE 277
+T +FVP F +W+ YL I GL L +G L+S + D +RP ++ +
Sbjct: 245 ITFFAAFVPPFGAAFVWVPMDIYLFTTKGIKEGLILLFFGTFLISTM-DNIVRPLVMKQG 303
Query: 278 ANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREWK 319
V + IGG G G+ +GPI+L+ + ++ ++
Sbjct: 304 IKLPYVALFFSTIGGLIKFGFIGVFLGPIILSTMLASVKIYR 345
>pir||F83313 conserved hypothetical protein PA2651 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948721|gb|AAG06039.1|AE004694_2 (AE004694)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 352
Score = 91.3 bits (223), Expect = 1e-17
Identities = 74/326 (22%), Positives = 150/326 (45%), Gaps = 33/326 (10%)
Query: 10 VIVLIILFLALK-VIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFLTLLLLLGA 68
+++L ++ LA +++PF+ +F+ I A I PV ++ R ++ + L + LL+
Sbjct: 12 LLLLAVVTLAFGWLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAAL-ITLLICV 70
Query: 69 LILLLILIYTLAPVVNQAYEYLSDIES--------LTLSIPFIPGDI-----------AS 109
LI+++ +I+ +V + ++S L ++ +P + S
Sbjct: 71 LIVIIPVIFIAGSLVQEGASVYQRVKSGELNFAAYLQQAVAALPPSVHQWLERFDLANLS 130
Query: 110 SLQETVDKLVEIGKDYLVSITFSVPKYLLQVVV---YLTFVYFFLVK-----RKAIEELL 161
SLQE + + + + FS+ + L V+ + ++ FFL++ + I++ +
Sbjct: 131 SLQEKLSSVAMQASQVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAV 190
Query: 162 SFRDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVL 221
E + + ++A ++ + + +G L G L F + + A+L G L
Sbjct: 191 PLSQEHKHHLFAKFTTVIRATVKGNIAVAATQGAL---GGLIFWLLGIEGALLWGTLMAF 247
Query: 222 FSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFD 281
S +P +IW A Y + G I G+ L ++ V++ L D +RP LV ++
Sbjct: 248 LSLLPAIGAALIWAPVAAYFLLTGAIWQGVVLILFCVVVIG-LVDNILRPILVGKDTKMP 306
Query: 282 EVLVLIGMIGGTWGLGLKGLIIGPIV 307
+ +VLI +GG GL G +IGP++
Sbjct: 307 DYVVLISTLGGMALFGLNGFVIGPLI 332
>dbj|BAB06327.1| (AP001516) unknown conserved protein [Bacillus halodurans]
Length = 352
Score = 87.0 bits (212), Expect = 3e-16
Identities = 84/340 (24%), Positives = 152/340 (44%), Gaps = 36/340 (10%)
Query: 7 VFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYP----VHVKISERFNEKYSAVFLTL 62
V + ++IL +A I+P PL A ITA IL P +HVK + N VF
Sbjct: 10 VLIALTILILVIAAYFILPVSLPLVAALITAMILSPAVHYLHVKTKLKRNFSVMVVFTLF 69
Query: 63 LLLLG--ALILLLILIYTLAPVVNQAYEYLSDIESLTLSI------------PFIPGDIA 108
+ L+G ++ +I +V +Y++DI L P +I
Sbjct: 70 VCLIGLCGYYVVTTVITQGVTIVENIPQYINDINRAWLLFQRDLEHRYEDLPPEFVYEIN 129
Query: 109 SSLQETVDKLVE--IGKDYLVSITF---SVPKYLLQVVVYLTFVYFFLV-----KRKAIE 158
+ +T++KL + +D++ IT SVP YL+ ++VYL ++ F++ K K
Sbjct: 130 LQVTDTLNKLRQDLADRDWIGDITSLVTSVPGYLVTIIVYLIALFLFMLELPRLKEKVYS 189
Query: 159 ELLSFRDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPT-AILAGI 217
L +++ + R + + I+A L++I ++ VG L VP A+L
Sbjct: 190 YLSEKTQDKVSFMSSRLSYVVSGFIKAQFLVSIIIFVVSLVGLLLI----VPEYALLMAF 245
Query: 218 LTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVARE 277
+ + F+P+ I A + + G++ G L I +L+ + T+ PK++ +
Sbjct: 246 VIWIIDFIPIIGSIAILGPWALFQLIAGNVAVGTQLLILAAILL--IIRRTVEPKVMGQH 303
Query: 278 ANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLRE 317
+ LI M G G+ G I+GP+++ +A + +E
Sbjct: 304 IGLSPLATLIAMYIGLMLFGVVGFIVGPLIV-IAFQSAKE 342
>gi|11499389 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|8928485|sp|O28474|YI00_ARCFU HYPOTHETICAL PROTEIN
AF1800 >gi|7483169|pir||G69474 conserved hypothetical
protein AF1800 - Archaeoglobus fulgidus
>gi|2648744|gb|AAB89447.1| (AE000978) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 340
Score = 83.1 bits (202), Expect = 4e-15
Identities = 83/326 (25%), Positives = 148/326 (44%), Gaps = 34/326 (10%)
Query: 8 FSVIVLIILFLALKVIIPFFSPLF----FAFITAYILYPVHVKISERFNEKYSAVFLTLL 63
+++++L+ + + L + FF+PL + AY+ PV KI E ++V T +
Sbjct: 5 WTLVLLLSILVVLALTFYFFTPLLDGIVMGVVFAYVAKPVKRKI-EHVGRIKASVIATAI 63
Query: 64 LLLGALILLLILIYTLAPVVNQAYEYLSD---IESLTLSI-------------PFIPGDI 107
++L +L+ Y L +NQA ++ IES L+I +I ++
Sbjct: 64 VILPISVLMF---YGLIQGLNQAIYLITHYKVIESGILNILSKMGIEEGEEYVKWITSNV 120
Query: 108 ASSLQETVD-KLVEIGKDYLVSITFSVPKYLLQVVV-YLTFVYFFLVKRKAIEELLSFRD 165
S LQ ++ VEI K T + + + +VV + R+ + R
Sbjct: 121 FSILQSSIQPSAVEITK----KATLLILNFFISIVVCFYALADMENFVRRTTSVVPEDRR 176
Query: 166 ERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFV 225
+ R V+ +VT ++L ++ I G++ FL F NVP A L L L + +
Sbjct: 177 DEFRRFVEEIDVTFESLWFGNFVVAILIGLVSLPFFLYF---NVPFAPLLSGLMFLAALI 233
Query: 226 PLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLV 285
P+F WMI L + YL+ D+ GL + G V + LP+ +RP V + +++
Sbjct: 234 PIFAEWMIILPVSLYLLLV-DVGRGLSFLLIGVVFLYVLPELILRPYFVGYTSKIHPLVL 292
Query: 286 LIGMIGGTWGLGLKGLIIGPIVLNVA 311
++ IGG G+ G I P+++ +A
Sbjct: 293 MLAFIGGGLVGGISGFFIAPMIVGLA 318
>sp|Q04454|YCT2_BACFI HYPOTHETICAL 43.4 KDA PROTEIN IN CTAF 3'REGION (ORF2)
>gi|2126791|pir||I39826 hypothetical protein cta locus
ORF2 - Bacillus firmus >gi|142791|gb|AAA22369.1|
(M94110) ORF2; putative [Bacillus firmus]
Length = 385
Score = 80.8 bits (196), Expect = 2e-14
Identities = 83/328 (25%), Positives = 144/328 (43%), Gaps = 34/328 (10%)
Query: 10 VIVLIILFL-ALKVIIPFFSPLFFAFITAYILYP----VHVKISERFNEKYSAVFLTLLL 64
+I+ I+LFL A I+P PL A +TA IL P + K + N VF ++
Sbjct: 45 IIISILLFLVAAYFILPVSLPLVAALLTALILTPAVNALQRKTKIKRNVAVMLVFTVFVV 104
Query: 65 LLG--ALILLLILIYTLAPVVNQAYEYLSDIESLTLSI------------PFIPGDIASS 110
+G + I +V + +Y+SDI L+ P + +I +
Sbjct: 105 FIGLSGYYIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPELVQEINIT 164
Query: 111 LQETVDKLVEIGKDY-----LVSITFSVPKYLLQVVVYLTFVYFFLVKRKAI-EELLSFR 164
+ T+ L +D + S+ S+P YL+ +VYL ++ F+++ + E+L S+
Sbjct: 165 VTNTLSDLRSNIRDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRLREKLYSYL 224
Query: 165 DERLVR----IVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTV 220
ER + R + + +A L++I I+ +G L A+L +
Sbjct: 225 SERTKEKVNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPE---VALLMAFIIW 281
Query: 221 LFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANF 280
L FVP+ +I A + + GD+ TG L I VL+ + T+ PK++ +
Sbjct: 282 LIDFVPIIGSIVILAPWAIFQLIVGDVSTGSKLLILAAVLL--IIRRTVEPKVMGKHIGL 339
Query: 281 DEVLVLIGMIGGTWGLGLKGLIIGPIVL 308
+ LI M G G+ G IIGP+++
Sbjct: 340 SPLATLIAMYLGLMLFGVIGFIIGPLLV 367
>pir||C82300 conserved hypothetical protein VC0624 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655058|gb|AAF93790.1|
(AE004148) conserved hypothetical protein [Vibrio
cholerae]
Length = 361
Score = 80.0 bits (194), Expect = 4e-14
Identities = 77/339 (22%), Positives = 161/339 (46%), Gaps = 46/339 (13%)
Query: 10 VIVLIILFLALK---VIIPFFSPLFFAFITAYILYPVHVKISERF-NEKYSAVFLTLLLL 65
V+V+ +L AL ++ P+ + + AFI + +++P+H ++ + A FL+ ++L
Sbjct: 13 VLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVL 72
Query: 66 LGALILLLILIYTLAPVVNQAYEYLSD-------------------IESLTLSIPFIPGD 106
+++ L+LI+ +V Q ++ + ++ L+L+ ++P +
Sbjct: 73 TVIIVIPLLLIF--GAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFE 130
Query: 107 IASSLQ--ETVDKLVEIGKDYLVSITFSVPKYLLQVVVY---LTFVYFFLVKR-----KA 156
S Q + + + LVSI+ + V++ + FV FFL++ A
Sbjct: 131 EISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHDKIISA 190
Query: 157 IEELLSF---RDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAI 213
I +L +++RL+ ++ NV+ A++ ++L IA+G+ G + ++ P +
Sbjct: 191 IRHILPLSRSQEDRLLSEIE--NVSKSAVMGSFLTA-IAQGV---AGGIGMWLAGFP-GL 243
Query: 214 LAGILTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKL 273
G + SF+P+ +IW+ YL GD + LAI+ +V + D +RP L
Sbjct: 244 FWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSI-DNLLRPFL 302
Query: 274 VAREANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAI 312
+ A + +++ ++GG GL GLI GP++ + +
Sbjct: 303 MQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITM 341
>sp|Q9ZLR4|Y567_HELPJ HYPOTHETICAL PROTEIN HP0567/JHP0514 >gi|7465226|pir||H71923
probable inner membrane protein - Helicobacter pylori
(strain J99) >gi|4155053|gb|AAD06090.1| (AE001484)
putative Inner membrane protein [Helicobacter pylori
J99]
Length = 349
Score = 77.6 bits (188), Expect = 2e-13
Identities = 78/333 (23%), Positives = 140/333 (41%), Gaps = 30/333 (9%)
Query: 8 FSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFLTLLLLLG 67
F ++ LI + L + F A + L+ V V +++RF+ S+ L+L
Sbjct: 7 FWILFLIGFYWMLYLYQDFLMDALIAGLLCVGLFQVKVFLNKRFSNVISSFLCVLVLASV 66
Query: 68 ALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQ------ETVDKLVEI 121
++ L ++Y + V+ + + E L+ I ++ G I +L + V K +E
Sbjct: 67 VIVPLYFIVYKGSNVIFEI-----NFEKLSALIKWLKGTITENLSHFPAIHDGVSKFLEN 121
Query: 122 GK-----DYLVSITFSVPKYLLQVVVYLTFV-----YFFLVKRKAIEELLSFRDERLVRI 171
YL+ ++ + KY L++V F+ +FF K L + +
Sbjct: 122 FSAASITGYLLKVSSYIGKYSLKLVTDALFILGLLFFFFYYGEKFYRYFLGVLPLEMNQS 181
Query: 172 VKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGW 231
K+ + ++R LL ++ IL V F + GIL L S VP G
Sbjct: 182 -KKIFEEVAGILRIVLLTSLITVILEGVAFGTMIIWFGHDGWSLGILYGLASLVPAVGGA 240
Query: 232 MIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVA--------REANFDEV 283
+IW+ A Y + +G + + + +Y +L+ L D I+P L+ +E+
Sbjct: 241 LIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVFIKKRIFKTTLKINEI 300
Query: 284 LVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLR 316
L+ MI G G G+I+GP + I +LR
Sbjct: 301 LIFFSMIAGISQFGFWGIIVGPTITAFFIALLR 333
>pir||H81280 acid membrane antigen A Cj1363 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968797|emb|CAB73790.1|
(AL139078) acid membrane antigen A [Campylobacter
jejuni]
Length = 347
Score = 74.1 bits (179), Expect = 2e-12
Identities = 74/350 (21%), Positives = 145/350 (41%), Gaps = 40/350 (11%)
Query: 1 MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60
M+ K +L+ILFL L + F + A + A ++ K N FL
Sbjct: 1 MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNINAKF---LNLTKGHKFL 57
Query: 61 TLLLLLGALILLLILIYTLAPV-------------VNQAYEYLSDI-----ESLTLSIPF 102
+L ++LL + A + V Q +Y+ + ES P
Sbjct: 58 ASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESFNFLEPK 117
Query: 103 IPGDIASSLQETVDKLVEIGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAI----E 158
I +AS ++ K + Y S T S K+L+ +V+ F +F + + +
Sbjct: 118 IKEFLASIDLNSISKQI---LSYASSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLK 174
Query: 159 ELLSFRDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGIL 218
++ + L ++ + ++ + +++ I +G L + + + IL G++
Sbjct: 175 SIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITIFYGYDG----ILMGVI 230
Query: 219 TVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRP------- 271
+ S +P G +I++ + Y + ++ + L + IY +++S + D I+P
Sbjct: 231 FAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFIADTLIKPLIIKWIN 290
Query: 272 -KLVAREANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREWKI 320
KLV +E+L+ + MI G G G+I+GP +L + LR + I
Sbjct: 291 KKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVSTLRMYVI 340
>sp|O25291|Y567_HELPY HYPOTHETICAL PROTEIN HP0567 >gi|7465092|pir||G64590 membrane
protein - Helicobacter pylori (strain 26695)
>gi|2313674|gb|AAD07623.1| (AE000570) membrane protein
[Helicobacter pylori 26695]
Length = 348
Score = 72.6 bits (175), Expect = 6e-12
Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 35/349 (10%)
Query: 8 FSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFLTLLLLLG 67
F ++ LI + + + F A + + V V + +RF S+ FL +L+L
Sbjct: 7 FWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFNVVSS-FLCVLILAS 65
Query: 68 ALIL-LLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQ------ETVDKLVE 120
LI+ L ++Y + ++ + + E + I ++ G I +L + K +E
Sbjct: 66 VLIVPLYFIVYKSSNIIFEI-----NFEKFSALIKWLKGIITENLSHFPTIHDGASKFLE 120
Query: 121 IGK-----DYLVSITFSVPKYLLQVVVYLTFV-----YFFLVKRKAIEELLSFRDERLVR 170
YL+ I+ V +Y L+++ F+ +FF + L + +
Sbjct: 121 NFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYFLGVLPLGMNQ 180
Query: 171 IVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEG 230
K+ + ++R LL ++ IL V F V GIL L S VP G
Sbjct: 181 S-KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYGLASLVPAVGG 239
Query: 231 WMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVA--------REANFDE 282
+IW+ A Y + +G++ + +A+Y +L+S L D I+P L+ +E
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299
Query: 283 VLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREWK---IQNKARGSQ 328
+L+ MI G G G+I+GP + I +LR ++ IQN+ + +
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNEQKACE 348
>sp|P77175|YDIK_ECOLI HYPOTHETICAL 39.8 KDA PROTEIN IN LPP-AROD INTERGENIC REGION
>gi|7466770|pir||H64926 probable membrane protein b1688
- Escherichia coli >gi|1742759|dbj|BAA15450.1| (D90811)
ORF_ID:o320#8; similar to [SwissProt Accession Number
Q04454] [Escherichia coli] >gi|1787979|gb|AAC74758.1|
(AE000264) orf, hypothetical protein [Escherichia coli
K12]
Length = 370
Score = 71.0 bits (171), Expect = 2e-11
Identities = 78/344 (22%), Positives = 150/344 (42%), Gaps = 35/344 (10%)
Query: 2 EVNKVVFSVIVLIILFLA-LKVIIPFFSPLFFAFITAYILYPVHVKISE-RFNEKYSAVF 59
+V +++ SV+ L I+ +A L ++ PF +A +PV +++ + F + AV
Sbjct: 9 DVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVL 68
Query: 60 LTLLLLLGALILLLILIYT--------LAPVVNQAYEYLSDIESLTLSIPFIPGDI---- 107
+ LLL+ I+ + L+ L ++ L D+ L +IP I +
Sbjct: 69 VMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLN-TIPVIGAKLYAGW 127
Query: 108 -------ASSLQETVDKLVEIGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAIEEL 160
+++ V + + V + ++++ + L F + + + +
Sbjct: 128 HNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQG 187
Query: 161 LSFRDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMT------VGFLAFKVSNVPTAIL 214
+ RL + RG+ + L+ A + +A G+++T +G + VS VP A L
Sbjct: 188 IRHFATRLAGV--RGDAAV--LLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATL 243
Query: 215 AGILTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLV 274
+L +L V L + + +L GD G L ++ V+ + D IRP L+
Sbjct: 244 LTVLMILSCLVQLGP-LPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL--DNVIRPMLI 300
Query: 275 AREANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREW 318
A+ +L+L G+IGG G+ GL IGP++L V+ + W
Sbjct: 301 RMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAW 344
>sp|O32095|YUEF_BACSU HYPOTHETICAL 40.9 KDA PROTEIN IN DEGQ-ALD INTERGENIC REGION
>gi|7430294|pir||G70007 conserved hypothetical protein
yueF - Bacillus subtilis >gi|2635675|emb|CAB15168.1|
(Z99120) similar to hypothetical proteins [Bacillus
subtilis]
Length = 369
Score = 70.6 bits (170), Expect = 2e-11
Identities = 86/359 (23%), Positives = 162/359 (44%), Gaps = 55/359 (15%)
Query: 10 VIVLIILFLALKV------IIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFLTLL 63
+ VL+I+F+A KV I F S LFF + A ILY + + +K LL
Sbjct: 14 LFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKKIPRTLSILL 73
Query: 64 LLLGALILLLILIYTLAPVV--------NQAYEYLSDIESLT-----------------L 98
+ L + LL + ++ P++ N +Y+ I++LT +
Sbjct: 74 IYLLFIGLLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSHSQWFTWMMNQDYV 133
Query: 99 SIPFIPGDIASSLQETVDKLVEIGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVK----- 153
SI I + S LQ + +S F V + V++ + F+ F+++K
Sbjct: 134 SISKIEQSLTSFLQNLPQNITS-----SLSAVFGVVTNITLVIITVPFILFYMLKDGHRF 188
Query: 154 -RKAIEEL-LSFRDERLVRIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPT 211
A++ L S+R E L +I K + TL A + LL+ + G T F+ + ++ +P
Sbjct: 189 PHLAVKILPASYRTEGL-KIFKDLSDTLAAYFQGQLLICLFVG---TACFIGYLIAGLPY 244
Query: 212 AILAGILTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRP 271
A++ GI+ + + +P + G + A A ++ D AI V+V L + P
Sbjct: 245 ALILGIVMAITNIIP-YVGPFLGAAPA-VIVGFMDSPAKALFAIIVVVIVQQLDGNLLSP 302
Query: 272 KLVAREANFDEVLVLIGMIG-GTWGLGLKGLIIGPIVLNVA----IEMLREWKIQNKAR 325
++ + N + +++ +IG G++G G+ G+I+ V V + ++R K++ ++R
Sbjct: 303 LVIGKRLNTHPLTIILLLIGAGSFG-GILGMILAVPVYAVVKAFFLNIVRLIKLRQRSR 360
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.148 0.429
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110239609
Number of Sequences: 2977
Number of extensions: 4586397
Number of successful extensions: 19413
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 19370
Number of HSP's gapped (non-prelim): 21
length of query: 329
length of database: 189,106,746
effective HSP length: 52
effective length of query: 277
effective length of database: 157,985,422
effective search space: 43761961894
effective search space used: 43761961894
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)