BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0660 (PAB0660) DE:Hypothetical protein
         (328 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75073 hypothetical protein PAB0660 - Pyrococcus abyssi (st...   626  e-178
pir||G71091 hypothetical protein PH0996 - Pyrococcus horikoshii ...   248  6e-65

>pir||H75073 hypothetical protein PAB0660 - Pyrococcus abyssi (strain Orsay)
           >gi|5458405|emb|CAB49893.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 328
           
 Score =  626 bits (1596), Expect = e-178
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MRRIKVTLILPMLIIGTIIGTVIAEQGYDVGALVAILENSAKVSKTLGHDPIYESISENQ 60
           MRRIKVTLILPMLIIGTIIGTVIAEQGYDVGALVAILENSAKVSKTLGHDPIYESISENQ
Sbjct: 1   MRRIKVTLILPMLIIGTIIGTVIAEQGYDVGALVAILENSAKVSKTLGHDPIYESISENQ 60

Query: 61  EELRNLVEKGEVDKALALLVNSTDPLIQILKKEQISTNITTRGSINRLRYYISVLNSTDY 120
           EELRNLVEKGEVDKALALLVNSTDPLIQILKKEQISTNITTRGSINRLRYYISVLNSTDY
Sbjct: 61  EELRNLVEKGEVDKALALLVNSTDPLIQILKKEQISTNITTRGSINRLRYYISVLNSTDY 120

Query: 121 PNIKVLSEMVTKAEENLKAGNIKEAQLYLSNAETILESYEVEIPSVSSPDHLLEILLAKY 180
           PNIKVLSEMVTKAEENLKAGNIKEAQLYLSNAETILESYEVEIPSVSSPDHLLEILLAKY
Sbjct: 121 PNIKVLSEMVTKAEENLKAGNIKEAQLYLSNAETILESYEVEIPSVSSPDHLLEILLAKY 180

Query: 181 NSTLKYSVQVGIALNESEYKRIEEEAESVTETLSKAKDLIDQGRDFEALLLLQNGLNDLI 240
           NSTLKYSVQVGIALNESEYKRIEEEAESVTETLSKAKDLIDQGRDFEALLLLQNGLNDLI
Sbjct: 181 NSTLKYSVQVGIALNESEYKRIEEEAESVTETLSKAKDLIDQGRDFEALLLLQNGLNDLI 240

Query: 241 EFQDELESLHESVIRRMFNENDKLLILKLSIMLKGYGETNRYTQLLNVASLEITLAKEDL 300
           EFQDELESLHESVIRRMFNENDKLLILKLSIMLKGYGETNRYTQLLNVASLEITLAKEDL
Sbjct: 241 EFQDELESLHESVIRRMFNENDKLLILKLSIMLKGYGETNRYTQLLNVASLEITLAKEDL 300

Query: 301 KLGRREVAYLRILHASKILDYIARVEGT 328
           KLGRREVAYLRILHASKILDYIARVEGT
Sbjct: 301 KLGRREVAYLRILHASKILDYIARVEGT 328


>pir||G71091 hypothetical protein PH0996 - Pyrococcus horikoshii
           >gi|3257410|dbj|BAA30093.1| (AP000004) 329aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 329
           
 Score =  248 bits (627), Expect = 6e-65
 Identities = 130/326 (39%), Positives = 202/326 (61%), Gaps = 4/326 (1%)

Query: 4   IKVTLILPMLIIGTIIGTVIAEQGYDVGALVAILENSAKVSKTLGHDPIYESISENQEEL 63
           IK  ++  +L I  +  T+     YDV  LV ILENS ++ K LG+D +   + E    +
Sbjct: 5   IKKVILAIILTIAILTPTLANSHIYDVNGLVKILENSIEICKILGYDDVANHLEEESSRV 64

Query: 64  RNLVEKGEVDKALALLVNSTDPLIQILKKEQIST--NITTRGSINRLRYYISVLNSTDYP 121
             L+    ++KA +L  +S+  +  +++KE++        RG ++RL +Y+S+LN T   
Sbjct: 65  GELLSSDNIEKAFSLTFSSSREVTNLVEKERVELPPEFEVRGELDRLEFYVSILNETGQD 124

Query: 122 NIKVLSEMVTKAEENLKAGNIKEAQLYLSNAETILESYEVEIPSVSSPDHLLEILLAKYN 181
              ++ E + +A  +LK G++ +A+ ++ N E  L  Y  E      P  L  +LL KYN
Sbjct: 125 VDPIIKE-IDEARSSLKKGDLDKARKHIKNGEKKLNLYIPERSFQGEPTTLFNLLLRKYN 183

Query: 182 STLKYSVQVGIALNESEYKRIEEEAESVTETLSKAKDLIDQGRDFEALLLLQNGLNDLIE 241
           +T+KY++QVG+ALNESEY ++EE+ E + E +  A++L ++ RD EAL+LLQ  L+ L  
Sbjct: 184 ATIKYAIQVGVALNESEYAKLEEKIEKIKEIMKNAENLAEENRDIEALVLLQENLDTLTY 243

Query: 242 FQDELESLHESVIRRMFNENDKLLILKLSIMLKGYGETNRYTQLLNVASLEITLAKEDLK 301
            Q+EL   H  +I R+F EN +LLILKL I+ K Y +  +  +L++VAS ++ LAKEDL+
Sbjct: 244 LQEELNHYHREIIERLFRENSRLLILKLEIVAKQY-KGGKLRELVDVASFDLDLAKEDLR 302

Query: 302 LGRREVAYLRILHASKILDYIARVEG 327
           L R E+AYLR+L ASKILDY+AR EG
Sbjct: 303 LNRTEIAYLRVLRASKILDYVAREEG 328


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.134    0.345 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102342416
Number of Sequences: 2977
Number of extensions: 3937206
Number of successful extensions: 12436
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12430
Number of HSP's gapped (non-prelim): 2
length of query: 328
length of database: 189,106,746
effective HSP length: 64
effective length of query: 264
effective length of database: 150,803,578
effective search space: 39812144592
effective search space used: 39812144592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 165 (68.7 bits)