BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0661 (PAB0661) DE:Hypothetical protein
(285 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75074 hypothetical protein PAB0661 - Pyrococcus abyssi (st... 565 e-160
pir||F71091 hypothetical protein PH0995 - Pyrococcus horikoshii ... 311 7e-84
pir||G71129 hypothetical protein PH0804 - Pyrococcus horikoshii ... 121 8e-27
pir||E75034 hypothetical protein PAB1544 - Pyrococcus abyssi (st... 106 4e-22
>pir||A75074 hypothetical protein PAB0661 - Pyrococcus abyssi (strain Orsay)
>gi|5458406|emb|CAB49894.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 285
Score = 565 bits (1441), Expect = e-160
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MNKIIPLCLFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVSETIIPEDYEVLIRVPTIG 60
MNKIIPLCLFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVSETIIPEDYEVLIRVPTIG
Sbjct: 1 MNKIIPLCLFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVSETIIPEDYEVLIRVPTIG 60
Query: 61 VPKDILVISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVWVLRLAYNDS 120
VPKDILVISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVWVLRLAYNDS
Sbjct: 61 VPKDILVISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVWVLRLAYNDS 120
Query: 121 PVILRFPNDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQVEHASHKGKIKLIFI 180
PVILRFPNDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQVEHASHKGKIKLIFI
Sbjct: 121 PVILRFPNDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQVEHASHKGKIKLIFI 180
Query: 181 LGIIGVMAVILKLRSGKEKKERYSEDELRRLAKKYNLNDDELNAIKYLISVGGKCKQAEL 240
LGIIGVMAVILKLRSGKEKKERYSEDELRRLAKKYNLNDDELNAIKYLISVGGKCKQAEL
Sbjct: 181 LGIIGVMAVILKLRSGKEKKERYSEDELRRLAKKYNLNDDELNAIKYLISVGGKCKQAEL 240
Query: 241 RRALNLPKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQKYA 285
RRALNLPKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQKYA
Sbjct: 241 RRALNLPKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQKYA 285
>pir||F71091 hypothetical protein PH0995 - Pyrococcus horikoshii
>gi|3257409|dbj|BAA30092.1| (AP000004) 284aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 284
Score = 311 bits (788), Expect = 7e-84
Identities = 156/289 (53%), Positives = 203/289 (69%), Gaps = 10/289 (3%)
Query: 1 MNKIIPLCLFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVSETIIPEDYEVLIRVPTIG 60
MN I + + + L SAYIVE I+VW D S+TV E I PEDYEV I+VPT+G
Sbjct: 2 MNFIKKVGVSIMFLTLFLSFTSAYIVENMTIFVWRDGSITVKEVIYPEDYEVFIKVPTLG 61
Query: 61 VPKDILVISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVWVLRLAYNDS 120
+DILVIS+ L+ Y +++IE LD ++ +IYTV NY +REG +W L+ +
Sbjct: 62 KAEDILVISDNRTLLEYESDGSFVKIETLDVRRVTVIYTVKNYVKREGALWTLKFNVTQA 121
Query: 121 PVILRFPNDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQ----VEHASHKGKIK 176
PV + P +A ++S+SDLPI Y++ ++++GPGNVT+ YT KS L + H + G I
Sbjct: 122 PVKVILPLEASVISISDLPIAYSNDTIVMGPGNVTICYTFKSLLPKKAGISHRAIAGAII 181
Query: 177 LIFILGIIGVMAVILKLRSGKEKKERYSEDELRRLAKKYNLNDDELNAIKYLISVGGKCK 236
L+ + A IL L+ K ++ +YSED+LR+LAK+YNLNDDELNAI YLI GGKC+
Sbjct: 182 LV------AITAGILALKGSKREERKYSEDKLRKLAKEYNLNDDELNAIIYLIEKGGKCR 235
Query: 237 QAELRRALNLPKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQKYA 285
QAELR+ALNLPKTTVWRM+RRLEQMGLVKLYKVGRENWVEL IDMQ+YA
Sbjct: 236 QAELRKALNLPKTTVWRMIRRLEQMGLVKLYKVGRENWVELAIDMQRYA 284
>pir||G71129 hypothetical protein PH0804 - Pyrococcus horikoshii
>gi|3257214|dbj|BAA29897.1| (AP000003) 275aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 275
Score = 121 bits (301), Expect = 8e-27
Identities = 86/292 (29%), Positives = 143/292 (48%), Gaps = 28/292 (9%)
Query: 1 MNKIIPLCLFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVSETI-IPEDYEVLIRVP-- 57
M +II L L TL S E ++ V+ D V VS I + + V I +P
Sbjct: 1 MRRIIALLLLTLF-------ASFAYAENVKLTVFPDGYVKVSVKINVTKGENVSISLPFY 53
Query: 58 ---TIGVP---KDILVISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVW 111
+ V K+I I E K++ Y+ GDG +E+ Y T + G W
Sbjct: 54 EFSNLSVTLNGKEIPFILGENKIVVYSSGDGTLEVT----------YITPELTEKHGKTW 103
Query: 112 VLRLAYNDSPVILRFPNDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQVEHASH 171
+ L +ND+ ++ PNDA+IV +S +PI +++I+ G + Y +
Sbjct: 104 KVILPFNDTKEVV-LPNDAVIVGLSGIPISIRDNAVIMPKGEQYIEYITPHIATSSSTGN 162
Query: 172 KGKIKLIFILGIIGVMAVILKLRSGKEKKERYSED-ELRRLAKKYNLNDDELNAIKYLIS 230
+ L IL + ++ G + + +S L LA+KYNLN +E + + Y++
Sbjct: 163 NVDLTLEGILTLTSFALGLILGAYGSKIRILFSRGVTLDDLARKYNLNKEEQDVLLYILE 222
Query: 231 VGGKCKQAELRRALNLPKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQ 282
GG+ +QA++R L +P+TT WR+++RLE+ GLV+L K+ E VEL + ++
Sbjct: 223 QGGRVRQADIRNDLGIPRTTTWRILKRLEKNGLVRLLKINNETHVELRVKIK 274
>pir||E75034 hypothetical protein PAB1544 - Pyrococcus abyssi (strain Orsay)
>gi|5458683|emb|CAB50170.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 275
Score = 106 bits (261), Expect = 4e-22
Identities = 72/276 (26%), Positives = 138/276 (49%), Gaps = 10/276 (3%)
Query: 9 LFTLLLVGLSGSVSAYIVEKTEIYVWEDNSVTVS-ETIIPEDYEVLIRVPTIGVPKDILV 67
+F LL SG V + ++ V+ D V V+ E + +D V I +P L
Sbjct: 6 IFVALLTLFSGLVYG---NEVKVVVFPDGYVKVTVEMNVTKDENVSISLPVYEFLN--LS 60
Query: 68 ISNEGKLIGYTVGDGYIEIEPLDATKLKLIYTVMNYTRREGGVWVLRLAYNDSPVILRFP 127
++ G+ I + +G+ I + +A L++ Y + T + G VW + L +N + + P
Sbjct: 61 VTLNGEKIPFILGEENITVYSSNAGLLRVTYITPDLTDKHGKVWKVLLPFNYTKDVT-LP 119
Query: 128 NDAIIVSVSDLPIMYNSSSLILGPGNVTVYYTLKSALQVEHASHKGKIKL-IFILGIIGV 186
A+IV +S +P+ +S+++ G + Y + ++ +F++ I
Sbjct: 120 EGAVIVGLSGIPLEIRGNSVVMPRGEQYIEYVVPPMFYNNQVKRGFGVQYSLFVVSFI-- 177
Query: 187 MAVILKLRSGKEKKERYSEDELRRLAKKYNLNDDELNAIKYLISVGGKCKQAELRRALNL 246
+ ++ L G+ K L L ++Y+LN +E + + Y+ GG+ +QA++R L +
Sbjct: 178 LGLVFGLYGGRIKVMLSRGVSLDDLVERYDLNKEEQDVLAYIAEHGGRVRQADIRNDLGI 237
Query: 247 PKTTVWRMVRRLEQMGLVKLYKVGRENWVELTIDMQ 282
P+TT WR+++RLE+M L+KL KV E + L + ++
Sbjct: 238 PRTTTWRILKRLEKMNLIKLEKVNNETYAILKVKIK 273
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.398
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105638278
Number of Sequences: 2977
Number of extensions: 4434865
Number of successful extensions: 12484
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12476
Number of HSP's gapped (non-prelim): 4
length of query: 285
length of database: 189,106,746
effective HSP length: 56
effective length of query: 229
effective length of database: 155,591,474
effective search space: 35630447546
effective search space used: 35630447546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)