BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0664 (PAB0664) DE:Hypothetical protein
(361 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 712 0.0
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 359 3e-98
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 352 4e-96
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 334 1e-90
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 291 6e-78
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 275 4e-73
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 275 7e-73
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 273 2e-72
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 267 1e-70
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 226 3e-58
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 218 9e-56
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 141 2e-32
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 113 4e-24
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat... 112 6e-24
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 110 2e-23
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 102 8e-21
gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfat... 98 2e-19
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat... 94 3e-18
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat... 93 4e-18
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus... 93 4e-18
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 85 2e-15
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 712 bits (1817), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGGIY 60
MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGGIY
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGGIY 60
Query: 61 IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTHR 120
IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTHR
Sbjct: 61 IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTHR 120
Query: 121 VSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFVFTGSEV 180
VSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFVFTGSEV
Sbjct: 121 VSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFVFTGSEV 180
Query: 181 GLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEIKEAVDV 240
GLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEIKEAVDV
Sbjct: 181 GLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEIKEAVDV 240
Query: 241 LGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVLKAISLG 300
LGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVLKAISLG
Sbjct: 241 LGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVLKAISLG 300
Query: 301 FNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVVERIIKE 360
FNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVVERIIKE
Sbjct: 301 FNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVVERIIKE 360
Query: 361 L 361
L
Sbjct: 361 L 361
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 359 bits (912), Expect = 3e-98
Identities = 181/367 (49%), Positives = 253/367 (68%), Gaps = 25/367 (6%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEG-GI 59
MLFDP+PKE++ED+FDRE+E+ E+ S+I YPITL+LGIRR GKSS++K LNE++ GI
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
Query: 60 YIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTH 119
YIDVRK GG ++ +E K L+ +++ + I++ G+K+ T
Sbjct: 61 YIDVRKAM--KGGRVS---------------EERLKLQLLGNIRRLR-INIPGIKLEPTP 102
Query: 120 RVSLSSLLERLNEQGE-----VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFV 174
+ ++ + + LN G ++LAFDEAQY +FYG G ++FL VAY+YDN + F+
Sbjct: 103 -LDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFL 161
Query: 175 FTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEI 234
F+GSEVGLLHDF+G D +P++GR+Y E+T+EPF R+ SI FLR GF E + V +E I
Sbjct: 162 FSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHI 221
Query: 235 KEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVL 294
+ AVD L G+PGWLVE+GYHYV EA+ L+ A L++ EL EL++RS RYV +L
Sbjct: 222 EVAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAIL 281
Query: 295 KAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVV 354
KAISLG NRW IKE+VEA+ G I N+R +++L+NL+ MSWIR +D K Y+I+DPVV
Sbjct: 282 KAISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVV 341
Query: 355 ERIIKEL 361
ER+I+ L
Sbjct: 342 ERVIRSL 348
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 352 bits (893), Expect = 4e-96
Identities = 186/363 (51%), Positives = 255/363 (70%), Gaps = 18/363 (4%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGGIY 60
MLFD RPK +REDIFDRE+E ++E ++ +YP+TL+LGIRRVGKSSLL+A LNE G I
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPG-IL 59
Query: 61 IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTHR 120
ID R+LY E G IT L K L+ I+ PF++ S K + ++ R +
Sbjct: 60 IDCRELYAERGH-ITREELIKELQSTIS----PFQKFQ-SKFKISLNLKFLTLEPR---K 110
Query: 121 VSLSSLLERLN----EQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFVFT 176
+SL + LN E GE I+AFDEAQYL+FYG G KE LA+ AYAYD+LPN+ + T
Sbjct: 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILT 170
Query: 177 GSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEIKE 236
GSEVGLLHDF+ ++DY+SP+YGR+ EV ++PF ++TS+ FL+ GF E ++V E EI+E
Sbjct: 171 GSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEE 230
Query: 237 AVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVLKA 296
AV++L GIPGWLV FG Y++ G F AM+ L+ A+ L+ GELEEL++RSPRYV +L+A
Sbjct: 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRA 290
Query: 297 ISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVVER 356
I+LG+NRW I++++ + +IP RL ++LENL+ M+WI V EDN YKI DPVV
Sbjct: 291 IALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWI--VEEDN--TYKIADPVVAT 346
Query: 357 IIK 359
+++
Sbjct: 347 VLR 349
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 334 bits (847), Expect = 1e-90
Identities = 178/364 (48%), Positives = 245/364 (66%), Gaps = 18/364 (4%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGGIY 60
MLFD RPKE+REDIFDREKE ++E +I DYP+TL+LGIRRVGKSSLLKA L+E GI
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIEDYPMTLLLGIRRVGKSSLLKAYLSE-NPGIL 59
Query: 61 IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTHR 120
ID R+LY E G IT + L + L+E N +++ R +S + + +K+
Sbjct: 60 IDCRELYGERGH-ITRIDLIRKLQERGNIVQKLLSRFKVS-------LDLKFLKIE-PKE 110
Query: 121 VSLSSLLERLNE----QGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFVFT 176
VSL + E LNE G+ +LAFDEAQYL+FYG G K+ LA+ AYAYDNL N+ V T
Sbjct: 111 VSLMDIFESLNEIGKKMGKFVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKIVLT 170
Query: 177 GSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEIKE 236
GSEVGLLHDF+G++DY+SP+YGRV EV +EPF S FL+AGF E + V++E I++
Sbjct: 171 GSEVGLLHDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIEK 230
Query: 237 AVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVLKA 296
A+++L GIPGWLV FG Y++ +E+AM+ + A+ L+ GEL EL+KRS RY+ +L+
Sbjct: 231 AIEMLDGIPGWLVLFGVEYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEILRG 290
Query: 297 ISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVVER 356
I+LG+NRW I++++ + P RL +L NL+ M WI V E +Y + DP+V+
Sbjct: 291 IALGYNRWSLIRDYLAVKGIPTPEPRLYELLNNLKKMGWINEV----EGKYILSDPLVKV 346
Query: 357 IIKE 360
+ E
Sbjct: 347 TLTE 350
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 291 bits (738), Expect = 6e-78
Identities = 156/367 (42%), Positives = 236/367 (63%), Gaps = 14/367 (3%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEG-GI 59
+LF PK K+ED+FDRE+E+ ++E + YPI +I G+RRVGKSSL+K LN+ + I
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLETYPIVVITGLRRVGKSSLVKVFLNKSDLLHI 65
Query: 60 YIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTH 119
+D R+LY SGG I++ HL + L E ++ + + K L++ LK + GI+VSG +
Sbjct: 66 TVDGRRLYETSGGNISSHHLTRFLGEELSRISKSQK--LLNVLKRVRGITVSGTSIELNP 123
Query: 120 R-VSLSSLLERLNEQGE-----VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
+ SLS LLE+LNE + +++ FDEAQYL++YG G + LA+ AY YDN NV F
Sbjct: 124 KEFSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFENVRF 183
Query: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
+ +GSEVG+LHDF+ + DY SP++GR +T+ PF+ + S+ FL GF E G ++ +
Sbjct: 184 IISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKI-NFD 242
Query: 234 IKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLV 293
++E V + GI G+LV FG Y++ +EA++ V + L + E+EEL+KRS RY +
Sbjct: 243 VEEIVREIDGIVGYLVLFGVKYLEKKKKDEALKEVFHAVKALFEKEMEELRKRSERYPFI 302
Query: 294 LKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPV 353
L+ I+ G N W ++K A+ I +SRL S+LE L+ MS+I E + Y+I+DPV
Sbjct: 303 LRQIARGINTWSALKNIFRAKGDFIGDSRLYSLLETLEKMSFI----EKTQSGYRIVDPV 358
Query: 354 VERIIKE 360
ERI++E
Sbjct: 359 FERILRE 365
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 275 bits (697), Expect = 4e-73
Identities = 153/366 (41%), Positives = 231/366 (62%), Gaps = 17/366 (4%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAI-RDYPITLILGIRRVGKSSLLKAVLNEME-GG 58
MLF P PK KRE++FDREKE+ EIE A+ R + L+LG RR+GKSS+L L+E+
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 59 IYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFT 118
+ +DVRK+Y E + + K L A+ K F+ + L+ ++G+ +SGV +
Sbjct: 64 VKVDVRKVYSEYSS-VNRYIIGKMLLSALRGRKRLFEEARMF-LEKVKGVRISGVNIEIN 121
Query: 119 HR-VSLSSLLERLNE----QGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
+ SL+ LLE LNE +G +I+AFDEAQYL+F G + ++AYA DNL N++F
Sbjct: 122 PKGFSLAELLEVLNEYGSEKGRIIIAFDEAQYLRF---GGATRYDGIIAYAIDNLENLTF 178
Query: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
+ TGSEVGLL+DF+ D +P++GR + ++ I+ FS + S+ FL AGF EAGVEV+ E
Sbjct: 179 ILTGSEVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRE 238
Query: 234 IKEAVDVLGGIPGWLVEFGY-HYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVL 292
+++AV+ L GIPGWL +GY K + E+ M V+K A +V EL L SPRY
Sbjct: 239 LEKAVEELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLFSYSPRYRF 298
Query: 293 VLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352
+LKAI+LG++RW+ IK+++ + G I ++ + +L+NL ++ E + RY I DP
Sbjct: 299 ILKAIALGYSRWRDIKDYLTLKVGPINDANFSKLLDNLVKHGYV----ERRDGRYVITDP 354
Query: 353 VVERII 358
V+ +++
Sbjct: 355 VLRKVL 360
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 275 bits (695), Expect = 7e-73
Identities = 154/369 (41%), Positives = 231/369 (61%), Gaps = 17/369 (4%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIR-DYPITLILGIRRVGKSSLLKAVLNEMEGGI 59
MLFDPRPK +++D++DRE+E+ E + A++ I L+LGIRR+GKSSLL L E
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 60 Y-IDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFT 118
+DVR LYF G +V K +E + S K + L L+SI+GI +SG+ V F
Sbjct: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLT-LRKILESIKGIKISGIHVEFE 119
Query: 119 HRVSLSSLLERLN-----EQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
R L S+ ER++ E +V++AFDEAQYL+ G + ++AYA DNLPN+ F
Sbjct: 120 RRQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGV----RYDGLIAYAIDNLPNIIF 175
Query: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
+ TGSEVG+LHDF+G+ + P++GR Y E+ ++ F+R+ S FLR GFEE + +EE
Sbjct: 176 ILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEE 235
Query: 234 IKEAVDVLGGIPGWLVEFGY-HYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVL 292
I+E V+ + GI GWL +GY VK EE++ + +A+ L++ EL + S RY
Sbjct: 236 IEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKF 295
Query: 293 VLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352
+LKA++LG RWK+IKE+VE R+GRI +++ +++L+NL ++ E + Y I DP
Sbjct: 296 ILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYL----EKRDGEYIIPDP 351
Query: 353 VVERIIKEL 361
+V+ I+ L
Sbjct: 352 LVKEIVANL 360
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 273 bits (692), Expect = 2e-72
Identities = 159/369 (43%), Positives = 230/369 (62%), Gaps = 20/369 (5%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYP-ITLILGIRRVGKSSLLKAVLNEME-GG 58
MLF P PK KRE++FDREKE++E++ AI + L+LG+RR+GKSSLL L E+
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 59 IYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFT 118
I +DVRK Y E + + + L AI+ E K L + ++GIS+SGV++ +
Sbjct: 61 IKVDVRKTYSEFSS-VNRYVVGRMLLSAISGKLEEAKNFL----RRVKGISISGVRIDVS 115
Query: 119 HR-VSLSSLLERLNEQGE----VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
R S+ LLE LN+ GE VI+AFDEAQYL+F G + ++AYA DNL N++F
Sbjct: 116 PRDFSIVELLEALNDYGERTGRVIIAFDEAQYLRF---GGATRYDGILAYAIDNLDNLTF 172
Query: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
+ TGSEVGLL DF+ ++ +P++GR + ++ +E F+ E S FL GFEE +V E E
Sbjct: 173 ILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELE 232
Query: 234 IKEAVDVLGGIPGWLVEFGY-HYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVL 292
I++AV+ L GI GWL +GY + E+AM +L+ A ++ EL L SPRY
Sbjct: 233 IEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKG 292
Query: 293 VLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352
+LKAISLG++RW+ IK+++ + G I +S +S+LENL ++ E RYKI DP
Sbjct: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYV----EKRNGRYKISDP 348
Query: 353 VVERIIKEL 361
V+ER+ +EL
Sbjct: 349 VLERVFREL 357
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 267 bits (676), Expect = 1e-70
Identities = 153/363 (42%), Positives = 233/363 (64%), Gaps = 21/363 (5%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRD-YPITLILGIRRVGKSSLLKAVLNEME-GG 58
MLF+P+PK +RED+++RE+E+ EIE +I+ P+ ++LGIRR+GKSSLL LNE+
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 59 IYIDVRKLYFESGGWITNVHLAKAL--EEAINSLKEPFKRILISSLKSIEGISVSGV--K 114
+ ID RK+Y + G + + LA+ + E + +E K +L K I G+S+ GV +
Sbjct: 61 VKIDARKIYSQFGS-VPHTALAEIILKEYTKTTPRERIKDVL----KGIRGVSIGGVNLE 115
Query: 115 VRFTHRVSLSSLLERLNEQGE-VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
+R VSLS +LER+N GE ++A DEAQYL+F ++ ++++A D+L N+SF
Sbjct: 116 LRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRF----SNAKYPDLISWAIDDLGNISF 171
Query: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
+ TGSEVGLL DF+ + D +SP++GR + E+ + F+R S+ FLR GFEE G++V+EEE
Sbjct: 172 ILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEE 231
Query: 234 IKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLV 293
++E VD L GI GWL +GY+ S +A++ + + A+ L+ E +LK+ SPRY L
Sbjct: 232 LEEVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELA 291
Query: 294 LKAISLGFNRWKSIKEFVEARSG-RIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352
+KA++ G +RWK IKE VE G RI + +++L NL ++ E K Y I DP
Sbjct: 292 MKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYL----EKTTKGYFIPDP 347
Query: 353 VVE 355
+VE
Sbjct: 348 LVE 350
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 226 bits (570), Expect = 3e-58
Identities = 148/367 (40%), Positives = 220/367 (59%), Gaps = 22/367 (5%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDY-PITLILGIRRVGKSSLLKAVLNEME-GG 58
+ FD RPK KRED++DRE+E++E+ + I + P+ ++ GIRR+GK+SLL+ LNE +
Sbjct: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
Query: 59 IYIDVRKLYFESGGWITNVHLAKALEEAINSL---KEPFKRILISSLKSIEGISVSG--V 113
+ +D+R + S L + A+N +P + + +LK + GISVSG V
Sbjct: 84 VIVDLRGVNPNS-----RRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSV 138
Query: 114 KVRFTHRVSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
+ + + +L SL+ L E+ ++A DE Q + G G KE +++A+ YD V+F
Sbjct: 139 SISWKNLETLYSLISAL-ERENFVIALDEVQEAR--GLVG-KELASLIAHFYD-YGEVTF 193
Query: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
V TGSEVGLL+DF+G+ + +P+YGR + E+ ++ F+RE SI FLR GF + V +E
Sbjct: 194 VLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEI 253
Query: 234 IKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEE-LKKR---SPR 289
+K AV+ L GI GWLV+FG ++ G+ E + VLK A LV EL++ L KR R
Sbjct: 254 LKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKR 313
Query: 290 YVLVLKAISLGFNRWKSIKEFVEARSGR-IPNSRLASILENLQNMSWIRPVFEDNEKRYK 348
Y++VLKAI+ G W IKE +E R I + RLA IL +L S I V E RY+
Sbjct: 314 YLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYR 373
Query: 349 ILDPVVE 355
I+DPV+E
Sbjct: 374 IVDPVLE 380
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 218 bits (549), Expect = 9e-56
Identities = 133/350 (38%), Positives = 209/350 (59%), Gaps = 27/350 (7%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEME-GGI 59
MLFD PK+ R+D FDREKEI++++ PITL+LG+RR GKSS++K +NE+ I
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKLKGLRA--PITLVLGLRRTGKSSIIKIGINELNLPYI 58
Query: 60 YIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRI--LISSLKSIEGISVSGVKVRF 117
Y+D+RK FE +I+ L++ IN L KR+ L+ +LK+I+GI + G +++F
Sbjct: 59 YLDLRK--FEERNYISYKDFLLELQKEINKL---VKRLPSLLKALKNIQGIVIMGNEIKF 113
Query: 118 T----HRVSLSSLLERLNEQGE--VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNV 171
R+S ++LLE + + VI+ DEAQ L K L +AYAYDNL +
Sbjct: 114 NWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV---KLRGVNLLPALAYAYDNLKRI 170
Query: 172 SFVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKE 231
F+ +GSE+GLL+D++ V D +SP++GR + V ++PFSRE +I FLR GF+EA ++ K+
Sbjct: 171 KFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD 230
Query: 232 EEIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEEL----KKRS 287
E+ + +GGIPGWL FG+ Y+ + + A+ L+ A++L+ E E +
Sbjct: 231 YEV--VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIAR 288
Query: 288 PRYVLVLKAISLGFNRWKSIKEFVEARSG-RIPNSRLASILENLQNMSWI 336
RY+ +++ +S +W +K +E G I +S + + L L SWI
Sbjct: 289 KRYLNIMRTLS-KCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWI 337
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 141 bits (351), Expect = 2e-32
Identities = 109/370 (29%), Positives = 181/370 (48%), Gaps = 35/370 (9%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEG-GI 59
MLF+ RPKE R+D++DREKEI+ I+ +I +LG+RR+GK+S++ + E+ +
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARGEWIAVLGMRRIGKTSVVNVAVKEIGAIKV 60
Query: 60 YIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRI-----LISSLKSIEGISVSGVK 114
I++ +++ L L E IN + + + L+S++ +E I + V+
Sbjct: 61 SINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKVR 120
Query: 115 VRFT--HRVSLSSLLERLNE-----QGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDN 167
+ T ++ ++ ++ + ++++ DEAQ L K +F ++ YDN
Sbjct: 121 AKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQEL---AKVNGLDFPSIFHDVYDN 177
Query: 168 LPNVSFVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGV 227
N +FTGS V L+ + +Y P +GR R++T+ F E S FL GFEE G+
Sbjct: 178 CKNTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGI 237
Query: 228 EVKEEEIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRS 287
+V E I EAV L GIPGWL FG Y +F M R +E+++ + E++ +
Sbjct: 238 KVDESVIDEAVKRLDGIPGWLTLFGSEY----TFSAKMG-TKPRIDEIIEKAINEVRNEA 292
Query: 288 PRYV------LVLKAISLGFNRW---KSIKEFVEARS----GRIPNSRLASILENLQNMS 334
++ L A+ L +R + E V+ S IP R+ IL L
Sbjct: 293 RNFIFSTQSPLRYSAVILALDRLGGKGELHEIVKVSSTILNENIPEPRVYEILNRLVEFD 352
Query: 335 WIRPVFEDNE 344
+I EDNE
Sbjct: 353 FIER-REDNE 361
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 113 bits (279), Expect = 4e-24
Identities = 99/367 (26%), Positives = 167/367 (44%), Gaps = 35/367 (9%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEM--EGG 58
+ FD RP+ E +F RE+E++++ A+ +LG R VGK+SL A NE E G
Sbjct: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
Query: 59 ---IYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKV 115
+ +D+R +A E+ + L + L SI +S G
Sbjct: 91 YNVVLVDLRD----------TETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGA 140
Query: 116 RFTHRVSLSS-----LLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPN 170
T ++ S+ L + L + + IL DE Q ++ G FL + ++ +
Sbjct: 141 GLTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQ----QGVPHFLKALGAVFNENHS 196
Query: 171 VSFVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVK 230
+ +FTGS G++ + Y YGR + + P+ + FLR GFE+ GV +
Sbjct: 197 LQIIFTGSYSGVVRRLFEAT-YSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYE 255
Query: 231 EEEIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEE-LKKRSPR 289
E EI++ + LG +PGWL +G + E+A++ ++ A + K ELE L+ RSP+
Sbjct: 256 EWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPK 315
Query: 290 YVLVLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKI 349
V++ ++ G + IK + + SRL IL M + + +D+ Y
Sbjct: 316 ARKVVRLLAFGASWGDLIKTGISEDA----LSRLLGIL-----MDELFILNKDDMGIYYF 366
Query: 350 LDPVVER 356
DPV +
Sbjct: 367 ADPVYRK 373
>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 112 bits (278), Expect = 6e-24
Identities = 67/187 (35%), Positives = 98/187 (51%), Gaps = 12/187 (6%)
Query: 180 VGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEIKEAVD 239
+GLLHDF+GV D SP+YGR Y E+T+E F +E S FLR GFEE ++V+E I++ +
Sbjct: 1 MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60
Query: 240 VLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSP----RYVLVLK 295
++ GIPGWL G Y + + + A + + SP RY VL+
Sbjct: 61 MVDGIPGWLTLAGNQYFNNRDLKRVKDLAINVALNEINSLISVKNNVSPIVAKRYRTVLR 120
Query: 296 AISLGFNRWKSIKEFVEARSG-RIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVV 354
I+ G N W I V+ G I S L++IL L+ +S I ++ Y+ LDPV
Sbjct: 121 CIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSII-------DENYRFLDPVY 173
Query: 355 ERIIKEL 361
+ + L
Sbjct: 174 KEASRML 180
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 110 bits (273), Expect = 2e-23
Identities = 107/375 (28%), Positives = 175/375 (46%), Gaps = 34/375 (9%)
Query: 3 FDPRPKEKREDIFD-REKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGGIYI 61
F RP + + ++D R K +D++ + I ++LG RRVGK+S++ + +
Sbjct: 7 FTTRPIMEEDCLWDKRRKIVDDLFRTVLRGNIAILLGPRRVGKTSVVNVISQKFAKRR-- 64
Query: 62 DVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLK---SIEGISVSGVKVRFT 118
+ +YF +I A+A+ A K +++ +S S++GISV K
Sbjct: 65 NHHYIYFNFSRFIG----ARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSIE 120
Query: 119 HRVSLSSLLERLNEQGEV--ILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFVFT 176
S S L R+ Q +L FDEAQ L + +F ++ D+ PN+S +FT
Sbjct: 121 EFTSDFSTLVRILSQNSERGLLIFDEAQVL---ARLKNLDFRGLIQEITDSYPNISMIFT 177
Query: 177 GSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEE-EIK 235
GS GLL +++ D P + R T+ ++ E + FL+ GFE G+ V+ E E++
Sbjct: 178 GSMPGLLIEYLNPGP-DKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELE 236
Query: 236 EAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRA-EELVKGELEELKK--------- 285
AV LGGIPG++ +G + L + L RA EE + LEE KK
Sbjct: 237 RAVKELGGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVY 296
Query: 286 RSPRYVLVLKAISLGFNRWKSIKEFVEARSGRIPN--SRLASILENLQNMSWIRPVFEDN 343
SP YV V+K ++ + E V R R P + L+ L+ + +IR
Sbjct: 297 NSPIYVEVMKVLASSYPTALKGAE-VYRRMNRAPKRIQHIYKYLDVLEKVGFIR----SE 351
Query: 344 EKRYKILDPVVERII 358
+Y I DP++ ++
Sbjct: 352 GGKYWIEDPILRELL 366
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 102 bits (251), Expect = 8e-21
Identities = 106/381 (27%), Positives = 181/381 (46%), Gaps = 42/381 (11%)
Query: 3 FDPRPKEKREDIF--DREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEM---EG 57
F RP E ++ + + +DE+ A I+++LG RRVGK+S++ V + G
Sbjct: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGKFIRKRG 66
Query: 58 GIYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISS---LKSIEGISVSGVK 114
YI YF +I A+A+ + K +++ +S + S +G+SV K
Sbjct: 67 HHYI-----YFNFSRFIG----ARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRK 117
Query: 115 VRFTHRVSLSSLLERLNEQGEV--ILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVS 172
S S L R+ Q +L FDEAQ L + +F ++ D+ PN+S
Sbjct: 118 TSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVL---ARLKNLDFRGLIQEITDSYPNIS 174
Query: 173 FVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEE 232
+FTGS G+L ++ S+ P + R T+ +S + + FL++GF +EV +E
Sbjct: 175 IIFTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDE 233
Query: 233 -EIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMR-MVLKRAEELVKGELEELKK----- 285
E++ AV LGGIPG++ +G V L A++ +LK EE L+E K+
Sbjct: 234 LELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAF 293
Query: 286 ----RSPRYVLVLKAISLGF-NRWKSIKEFVEARSGRIPNSRLASI---LENLQNMSWIR 337
SP YV VL+ ++ + + + + + E + R+ I L+ L+ + +IR
Sbjct: 294 INVYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIR 353
Query: 338 PVFEDNEKRYKILDPVVERII 358
+ KRY I DP++ ++
Sbjct: 354 ----SDGKRYWIEDPLLRIVV 370
>gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 196
Score = 97.9 bits (240), Expect = 2e-19
Identities = 74/212 (34%), Positives = 113/212 (52%), Gaps = 22/212 (10%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEME---- 56
M+FD PKE E++ REKE++ S I +I G R +GK+SL+K V+NE++
Sbjct: 1 MIFDLHPKETIEELVGREKEVEHCISQILSKNWIIIGGQREIGKTSLMKVVINEIKKREQ 60
Query: 57 -GGIYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFK-RILISSLKSIEGISVSGVK 114
GIYI++R G + L L IN K ++ ++ I+ L + GI + G
Sbjct: 61 IAGIYINLR-------GVRSLNSLLTILVSEINKEKISWRFKVNINFLITSAGIEIRGGS 113
Query: 115 VRFTHRVSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFV 174
R RV ++SL+E LN E+++AFDE Q L F K+FL ++ Y P V +
Sbjct: 114 KR---RV-VNSLIELLNSSDEIVIAFDEVQELSF----ASKQFLDILGNVYATNPKVHMI 165
Query: 175 FTGSEVGLLHDFVGVSDYDSPIYGRVYREVTI 206
F+GS VGL+ + DSP++GR E+ +
Sbjct: 166 FSGSYVGLVKALLSPPS-DSPLHGRPPTEIRL 196
>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 162
Score = 93.6 bits (229), Expect = 3e-18
Identities = 70/171 (40%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Query: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEME-GGI 59
MLFD RPKE RED+FDREKEI EI S I + P+ LI G+RR+GK+S+LK LNE++ +
Sbjct: 1 MLFDERPKENREDLFDREKEIKEIMSNI-NRPLILITGVRRIGKTSVLKVALNEIKIPHV 59
Query: 60 YIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTH 119
ID R L + L A +S F + L I G+S+ G V
Sbjct: 60 IIDCRNLRPN----YSRGDLYSLFSNAFSSKLSTF----LDVLSKIRGVSILGNSVELKW 111
Query: 120 R----VSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYD 166
+ VSLS L + LNE+ +++ DEAQ L+ + KE +A AY YD
Sbjct: 112 KGREYVSLSDLFDHLNEK-RIVIGIDEAQKLRGPLSNEIKEAIAH-AYDYD 160
>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 395
Score = 93.2 bits (228), Expect = 4e-18
Identities = 96/388 (24%), Positives = 166/388 (42%), Gaps = 57/388 (14%)
Query: 12 EDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGG-IYIDVRK----- 65
++ FDRE EI ++ + I+G+RR+GK+S++ L +E +Y+ V
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGK 78
Query: 66 -------LYFESGGWITNV-------------------HLAKALEEAINSLKEPFKRILI 99
L S ITN L L E I +K F L+
Sbjct: 79 SFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINLV 138
Query: 100 SSLKSIEGISVSGVKVRFTHRVSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEF-L 158
+ + GVK + L L +++A DE QYLK ++ F L
Sbjct: 139 EVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKLASQNYPGIFHL 198
Query: 159 AMVAYAYDNLPNVSFVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFL 218
+ + N VS+V +GS VGLL D P Y + + + ++ F + TS +FL
Sbjct: 199 LRSKWQFHN--KVSYVISGSSVGLLEKIF--YDKKEPFY-QFFFPIYVKQFDKNTSFNFL 253
Query: 219 RAGFEEAGVEVKEEEIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKG 278
+ GF + G + ++ + A++ L GIP WL FG ++ E K
Sbjct: 254 KQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEV----------TSECAKK 303
Query: 279 ELEELKKRSP--RYVLVLKAISLGFNRWKSIKEFVEARSGR-----IPNSRLASILENLQ 331
+E++ P R ++ + LG N + I +++ + G+ + SR ASI E L+
Sbjct: 304 VIEDITFNDPIVRGIIQEEYNKLGKNA-RIILKYLAEKGGKGDLKGLELSR-ASINEGLK 361
Query: 332 NMSWIRPVFEDNEKRYKILDPVVERIIK 359
++ + ++ +Y I+DPV+ +++K
Sbjct: 362 SLLGSGYIVKEERGKYAIIDPVIVKVLK 389
>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
>gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
[Sulfolobus solfataricus]
Length = 395
Score = 93.2 bits (228), Expect = 4e-18
Identities = 96/388 (24%), Positives = 166/388 (42%), Gaps = 57/388 (14%)
Query: 12 EDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEGG-IYIDVRK----- 65
++ FDRE EI ++ + I+G+RR+GK+S++ L +E +Y+ V
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGK 78
Query: 66 -------LYFESGGWITNV-------------------HLAKALEEAINSLKEPFKRILI 99
L S ITN L L E I +K F L+
Sbjct: 79 SFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNINLV 138
Query: 100 SSLKSIEGISVSGVKVRFTHRVSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEF-L 158
+ + GVK + L L +++A DE QYLK ++ F L
Sbjct: 139 EVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKLASQNYPGIFHL 198
Query: 159 AMVAYAYDNLPNVSFVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFL 218
+ + N VS+V +GS VGLL D P Y + + + ++ F + TS +FL
Sbjct: 199 LRSKWQFHN--KVSYVISGSSVGLLEKIF--YDKKEPFY-QFFFPIYVKQFDKNTSFNFL 253
Query: 219 RAGFEEAGVEVKEEEIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKG 278
+ GF + G + ++ + A++ L GIP WL FG ++ E K
Sbjct: 254 KQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEV----------TSECAKK 303
Query: 279 ELEELKKRSP--RYVLVLKAISLGFNRWKSIKEFVEARSGR-----IPNSRLASILENLQ 331
+E++ P R ++ + LG N + I +++ + G+ + SR ASI E L+
Sbjct: 304 VIEDITFNDPIVRGIIQEEYNKLGKNA-RIILKYLAEKGGKGDLKGLELSR-ASINEGLK 361
Query: 332 NMSWIRPVFEDNEKRYKILDPVVERIIK 359
++ + ++ +Y I+DPV+ +++K
Sbjct: 362 SLLGSGYIVKEERGKYAIIDPVIVKVLK 389
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 84.7 bits (206), Expect = 2e-15
Identities = 103/379 (27%), Positives = 164/379 (43%), Gaps = 61/379 (16%)
Query: 15 FDREKEIDEIESAIR-DYPITLILGIRRVGKSSLLKAVLNEM----------------EG 57
F REKEI+ + + P+ LI G RR+GK+SLL A L +G
Sbjct: 13 FGREKEIESLLGLYKLGQPVGLI-GPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKG 71
Query: 58 GIYIDVRKLYFESGGWITNVHLAKA-----LEEAINSLKEPFKRILISSLKSIEGI---- 108
+ + Y S +T+ +KA LE+ + LK+ R L+ +K I
Sbjct: 72 FDFAEFLSAYITS---VTSTIYSKANYKIILEKGKSYLKQ--LRDLLGQVKVTFNIPELY 126
Query: 109 -----------SVSGVKVRFTHRVSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEF 157
++ F + L +L V++A DE QYL+ K
Sbjct: 127 STIELTLDKAEKKKYLEKEFRDALDLPQILSEKFGLQRVVIAIDEFQYLRL-AKQSIPGI 185
Query: 158 LAMVAYAYDNLPNVSFVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISF 217
++ + NV++V +GS +G++ + + S + P Y Y + + PF R+TSI F
Sbjct: 186 FHIMRSKWQFHKNVTYVISGSLIGMMMELL--SSRNQPFYQFFYL-MKVNPFDRKTSIEF 242
Query: 218 LRAGFEEAGVEVKEEEIKEAVDVLGGIPGWLVEFGYHYV-KLGSFEEAMRMVLKRAEELV 276
LR GFE ++VK EEI+ VD + G P WL G V + S E + ++K LV
Sbjct: 243 LRKGFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDI-NLV 301
Query: 277 KGELEELKKRSPRYVLVLKAI-SLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSW 335
+LK+ SP VLK + SLG A S + L ++ L+ +
Sbjct: 302 TALENDLKRLSPTARAVLKNLASLG-----------GAGSPKDLGLDLLTVTRGLKQLMN 350
Query: 336 IRPVFEDNEKRYKILDPVV 354
V ++ Y+I+DP++
Sbjct: 351 YGLVEKEGRGIYRIVDPIL 369
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128600444
Number of Sequences: 2977
Number of extensions: 5270809
Number of successful extensions: 16852
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16772
Number of HSP's gapped (non-prelim): 22
length of query: 361
length of database: 189,106,746
effective HSP length: 57
effective length of query: 304
effective length of database: 154,992,987
effective search space: 47117868048
effective search space used: 47117868048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)