BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0665 (PAB0665) DE:Hypothetical protein
(137 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75075 hypothetical protein PAB0665 - Pyrococcus abyssi (st... 260 6e-69
pir||C71072 hypothetical protein PH1270 - Pyrococcus horikoshii ... 197 4e-50
pir||A82966 conserved hypothetical protein PA5444 [imported] - P... 98 4e-20
sp|P29939|YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO 3'REGI... 93 1e-18
pir||D81981 probable integral membrane protein NMA0616 [imported... 88 5e-17
pir||H81035 conserved hypothetical protein NMB1840 [imported] - ... 87 9e-17
pir||A70450 hypothetical protein aq_1741 - Aquifex aeolicus >gi|... 72 2e-12
>pir||B75075 hypothetical protein PAB0665 - Pyrococcus abyssi (strain Orsay)
>gi|5458415|emb|CAB49903.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 137
Score = 260 bits (657), Expect = 6e-69
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MKGYILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTKGSL 60
MKGYILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTKGSL
Sbjct: 1 MKGYILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTKGSL 60
Query: 61 TAKNLLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIK 120
TAKNLLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIK
Sbjct: 61 TAKNLLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIK 120
Query: 121 TAIGALLIVIGAILVSV 137
TAIGALLIVIGAILVSV
Sbjct: 121 TAIGALLIVIGAILVSV 137
>pir||C71072 hypothetical protein PH1270 - Pyrococcus horikoshii
>gi|3257690|dbj|BAA30373.1| (AP000005) 140aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 140
Score = 197 bits (496), Expect = 4e-50
Identities = 97/137 (70%), Positives = 116/137 (83%)
Query: 1 MKGYILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTKGSL 60
M+ Y++YA+L+AFFASLVPIFGK+GLK+VD T+ATTIRA+IMAIFLV V F +
Sbjct: 4 MQAYLIYAVLAAFFASLVPIFGKIGLKDVDPTMATTIRAIIMAIFLVTVTFFVKPKMSGI 63
Query: 61 TAKNLLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIK 120
++LFI SG++GALSWLFYFMAIK G+VPAVVAIDKTSVALA+FLSWL+LG MNIK
Sbjct: 64 NRYSILFITLSGVSGALSWLFYFMAIKNGRVPAVVAIDKTSVALAIFLSWLVLGSEMNIK 123
Query: 121 TAIGALLIVIGAILVSV 137
T IGALLIV+GAILVS+
Sbjct: 124 TVIGALLIVLGAILVSL 140
>pir||A82966 conserved hypothetical protein PA5444 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951774|gb|AAG08829.1|AE004957_4 (AE004957)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 142
Score = 97.9 bits (240), Expect = 4e-20
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 1 MKGYILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTK--G 58
+ + +A+LSA FA+L IF K+GL VD+ AT IR +++ + L G+ + G + G
Sbjct: 2 LASWAFWALLSALFAALTAIFAKIGLDRVDSDFATFIRTLVILVTLGGILAVLGKFQAPG 61
Query: 59 SLTAKNLLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMN 118
S+ ++ LF+ SGLA SW+ YF A+K G V +DK SV L L LGE ++
Sbjct: 62 SILPRSWLFLVLSGLATGASWICYFRALKLGPASLVAPLDKFSVVLVALLGVAFLGERLD 121
Query: 119 IKTAIGALLIVIGAILVSV 137
++ +G L+ G +++++
Sbjct: 122 LRQWLGVALVTAGVVVLAI 140
>sp|P29939|YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO 3'REGION (ORF6)
>gi|94980|pir||F38164 hypothetical protein 6 (cobo 3'
region) - Pseudomonas sp >gi|151156|gb|AAA25782.1|
(M62866) ORF6 [Pseudomonas denitrificans]
Length = 141
Score = 93.2 bits (228), Expect = 1e-18
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 7 YAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTK--GSLTAKN 64
+A+LSA FA+L +F K+G+ +++ AT IR V++ + + TG + + +
Sbjct: 8 WALLSAAFAALTAVFAKVGVAQINSDFATLIRTVVILCVIAAIVAATGQWQKPSEIPGRT 67
Query: 65 LLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIKTAIG 124
LF+A SGLA SWL YF A+K G V +DK S+ + L LGE +N+ +G
Sbjct: 68 WLFLALSGLATGASWLAYFRALKLGDAARVAPLDKLSIVMVAIFGVLFLGEKLNLMNWLG 127
Query: 125 ALLIVIGAILVSV 137
I GA+L++V
Sbjct: 128 VAFIAAGALLLAV 140
>pir||D81981 probable integral membrane protein NMA0616 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7379351|emb|CAB83906.1| (AL162753) putative integral
membrane protein [Neisseria meningitidis Z2491]
Length = 143
Score = 87.8 bits (214), Expect = 5e-17
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 4 YILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTKG--SLT 61
++ +A+ SA FASL IF K+GL+ +D+ AT IR +++ L+ TG +G T
Sbjct: 6 WLFWALASAGFASLTAIFAKMGLQGIDSDFATFIRTLVILAALLLFLTYTGKWQGVNGFT 65
Query: 62 AKNLLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIKT 121
KN F+ SGLA SWL YF A++ G V +DK S+ L ++ + L E N +
Sbjct: 66 GKNWTFLILSGLATGASWLAYFKALQLGNASQVAPVDKFSLVLVALMAVVFLDERPNTQE 125
Query: 122 AIGALLIVIGAILVSV 137
IG L+ G +++++
Sbjct: 126 WIGLGLVTAGVLVLAL 141
>pir||H81035 conserved hypothetical protein NMB1840 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227096|gb|AAF42175.1| (AE002534) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 143
Score = 87.0 bits (212), Expect = 9e-17
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 4 YILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLTGSTKG--SLT 61
++ +A+ SA FASL IF K+GL+ +D+ AT IR +++ L+ TG +G T
Sbjct: 6 WLFWALASAGFASLTAIFAKMGLQGIDSDFATFIRTLVILAALLLFLTYTGKWQGVNGFT 65
Query: 62 AKNLLFIAFSGLAGALSWLFYFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIKT 121
+N F+ SGLA SWL YF A++ G V IDK S+ L ++ + L E N +
Sbjct: 66 GRNWTFLILSGLATGASWLAYFKALQLGNASQVAPIDKFSLVLVALMAVVFLDERPNTQE 125
Query: 122 AIGALLIVIGAILVSV 137
IG L+ G +++++
Sbjct: 126 WIGLGLVTAGVLVLAL 141
>pir||A70450 hypothetical protein aq_1741 - Aquifex aeolicus
>gi|2984057|gb|AAC07598.1| (AE000754) putative protein
[Aquifex aeolicus]
Length = 143
Score = 72.2 bits (174), Expect = 2e-12
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 5 ILYAILSAFFASLVPIFGKLGLKNVDATLATTIRAVIMAIFLVGVAFLT-GSTKGSLTAK 63
+ +A+L+AF PIF KLG+K TLA + A L + L + K
Sbjct: 7 VFWALLAAFIWGTAPIFFKLGMKGEMPTLAGIFVHNLTATSLAFIGLLLLRENPFAYPLK 66
Query: 64 NLLFIAFSGLAGALSWLF-YFMAIKEGKVPAVVAIDKTSVALAVFLSWLILGENMNIKTA 122
+L +A G+ G L+ Y+ A+K G V V + +S + L++LILGE ++ +
Sbjct: 67 EILSVALGGILGGFLGLWVYYKAVKVGDVSIVAPVAASSPLFSTLLAYLILGEGLSFQKI 126
Query: 123 IGALLIVIGAILVS 136
IGALLIV+G LVS
Sbjct: 127 IGALLIVLGVALVS 140
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.142 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41038101
Number of Sequences: 2977
Number of extensions: 1369114
Number of successful extensions: 5678
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5671
Number of HSP's gapped (non-prelim): 7
length of query: 137
length of database: 189,106,746
effective HSP length: 53
effective length of query: 84
effective length of database: 157,386,935
effective search space: 13220502540
effective search space used: 13220502540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 161 (67.1 bits)