BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0672 (PAB0672) DE:Hypothetical protein
         (167 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75076 hypothetical protein PAB0672 - Pyrococcus abyssi (st...   344  3e-94
pir||C71068 hypothetical protein PH1241 - Pyrococcus horikoshii ...   317  3e-86

>pir||E75076 hypothetical protein PAB0672 - Pyrococcus abyssi (strain Orsay)
           >gi|5458426|emb|CAB49914.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 167
           
 Score =  344 bits (874), Expect = 3e-94
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MRGSVSKVVRFDDEEEFIEEMQAVFDVFSELSQRYGGGNVVEGVILWDTVGIKDNDDIKV 60
           MRGSVSKVVRFDDEEEFIEEMQAVFDVFSELSQRYGGGNVVEGVILWDTVGIKDNDDIKV
Sbjct: 1   MRGSVSKVVRFDDEEEFIEEMQAVFDVFSELSQRYGGGNVVEGVILWDTVGIKDNDDIKV 60

Query: 61  FRVGEFQWVKGTLNLEPEKLFTLERYFDELESKWDELTPEDIKYFVDLMNEALGEERVYY 120
           FRVGEFQWVKGTLNLEPEKLFTLERYFDELESKWDELTPEDIKYFVDLMNEALGEERVYY
Sbjct: 61  FRVGEFQWVKGTLNLEPEKLFTLERYFDELESKWDELTPEDIKYFVDLMNEALGEERVYY 120

Query: 121 EAYDLGLNRGEAYVVINLFALEYLDHVVDVDDREAFEWALNTLMKYL 167
           EAYDLGLNRGEAYVVINLFALEYLDHVVDVDDREAFEWALNTLMKYL
Sbjct: 121 EAYDLGLNRGEAYVVINLFALEYLDHVVDVDDREAFEWALNTLMKYL 167


>pir||C71068 hypothetical protein PH1241 - Pyrococcus horikoshii
           >gi|3257658|dbj|BAA30341.1| (AP000005) 167aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 167
           
 Score =  317 bits (805), Expect = 3e-86
 Identities = 146/167 (87%), Positives = 161/167 (95%)

Query: 1   MRGSVSKVVRFDDEEEFIEEMQAVFDVFSELSQRYGGGNVVEGVILWDTVGIKDNDDIKV 60
           MRGSVSK+VRF+DEEEFIEEMQ  FD+FSELSQRYGGGNV+EGVILWDTVGI+DNDDIKV
Sbjct: 1   MRGSVSKIVRFEDEEEFIEEMQTAFDIFSELSQRYGGGNVIEGVILWDTVGIRDNDDIKV 60

Query: 61  FRVGEFQWVKGTLNLEPEKLFTLERYFDELESKWDELTPEDIKYFVDLMNEALGEERVYY 120
           FR+GEFQWVKGTLNLEPEKLFTLE+YFDELESKWDEL+ +D+KYFVDLMNEALGEERVYY
Sbjct: 61  FRIGEFQWVKGTLNLEPEKLFTLEKYFDELESKWDELSVDDVKYFVDLMNEALGEERVYY 120

Query: 121 EAYDLGLNRGEAYVVINLFALEYLDHVVDVDDREAFEWALNTLMKYL 167
           EAYDLGL RGEAY++INL ALEYLDHV+DV+DREAF+WALN LMKYL
Sbjct: 121 EAYDLGLKRGEAYLIINLLALEYLDHVIDVEDREAFDWALNMLMKYL 167


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65069118
Number of Sequences: 2977
Number of extensions: 2799030
Number of successful extensions: 7017
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7015
Number of HSP's gapped (non-prelim): 2
length of query: 167
length of database: 189,106,746
effective HSP length: 52
effective length of query: 115
effective length of database: 157,985,422
effective search space: 18168323530
effective search space used: 18168323530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)