BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0673 (PAB0673) DE:Hypothetical protein
         (129 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75076 hypothetical protein PAB0673 - Pyrococcus abyssi (st...   269  1e-71
pir||B71068 hypothetical protein PH1240 - Pyrococcus horikoshii ...   222  2e-57
gi|11498460 A. fulgidus predicted coding region AF0854 [Archaeog...   116  8e-26

>pir||F75076 hypothetical protein PAB0673 - Pyrococcus abyssi (strain Orsay)
           >gi|5458427|emb|CAB49915.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 129
           
 Score =  269 bits (680), Expect = 1e-71
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MDVRELLIEQYGYAPDDLVLEVRGKRIYAYKPCELKEEGHEGIYIGAIEKDGIRLTIEGA 60
           MDVRELLIEQYGYAPDDLVLEVRGKRIYAYKPCELKEEGHEGIYIGAIEKDGIRLTIEGA
Sbjct: 1   MDVRELLIEQYGYAPDDLVLEVRGKRIYAYKPCELKEEGHEGIYIGAIEKDGIRLTIEGA 60

Query: 61  FIIGPKAEKNVIELDDEKARAWMSGKDVEVGVKGNAWVILKWRNFWLGGGKLVDGVVKNY 120
           FIIGPKAEKNVIELDDEKARAWMSGKDVEVGVKGNAWVILKWRNFWLGGGKLVDGVVKNY
Sbjct: 61  FIIGPKAEKNVIELDDEKARAWMSGKDVEVGVKGNAWVILKWRNFWLGGGKLVDGVVKNY 120

Query: 121 VPKERRLVL 129
           VPKERRLVL
Sbjct: 121 VPKERRLVL 129


>pir||B71068 hypothetical protein PH1240 - Pyrococcus horikoshii
           >gi|3257657|dbj|BAA30340.1| (AP000005) 129aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 129
           
 Score =  222 bits (559), Expect = 2e-57
 Identities = 97/127 (76%), Positives = 117/127 (91%)

Query: 1   MDVRELLIEQYGYAPDDLVLEVRGKRIYAYKPCELKEEGHEGIYIGAIEKDGIRLTIEGA 60
           MD+RE+LIEQYGYAP+ L+LEV+GK+IYAYKPC+  E GH GIYIGAIEKDGIRLTIEG+
Sbjct: 1   MDIREMLIEQYGYAPEGLILEVKGKKIYAYKPCDFPENGHNGIYIGAIEKDGIRLTIEGS 60

Query: 61  FIIGPKAEKNVIELDDEKARAWMSGKDVEVGVKGNAWVILKWRNFWLGGGKLVDGVVKNY 120
           FIIGP A++NVIE+DDE+A++WM G+D+EV  +GN WVILKWR+FWLGGGKLV+GVVKNY
Sbjct: 61  FIIGPNAKRNVIEVDDERAKSWMRGEDIEVNEEGNRWVILKWRDFWLGGGKLVNGVVKNY 120

Query: 121 VPKERRL 127
           +PKERRL
Sbjct: 121 IPKERRL 127


>gi|11498460 A. fulgidus predicted coding region AF0854 [Archaeoglobus fulgidus]
           >gi|7483498|pir||F69356 hypothetical protein AF0854 -
           Archaeoglobus fulgidus >gi|2649759|gb|AAB90395.1|
           (AE001045) A. fulgidus predicted coding region AF0854
           [Archaeoglobus fulgidus]
           Length = 128
           
 Score =  116 bits (289), Expect = 8e-26
 Identities = 63/129 (48%), Positives = 88/129 (67%), Gaps = 5/129 (3%)

Query: 3   VRELLIEQY-GYAPDDLVLEVRGK-RIYAYKPCELKE-EGHEGIYIGAIEKDGIRLTIEG 59
           +R LL EQ+    P+D+   + GK R+YAYK CE  E   H GIY G IE+DG+RL+IEG
Sbjct: 1   MRRLLKEQFEAELPEDIRFYMGGKSRVYAYKSCEFDEIASHRGIYFGTIERDGLRLSIEG 60

Query: 60  AFIIGPKAEKNVIELDDEKARAWMSGKDVEVGVKGNAWVILKWRNFWLGGGKLVDGVVKN 119
           +FI G  A+KNVIELD+E    WM G+D+E  VKG  + I+K  +++ G GK    V++N
Sbjct: 61  SFIAGKLAKKNVIELDEESFGRWMRGEDIEADVKG--YCIVKHGSYFAGCGKGNGRVLRN 118

Query: 120 YVPKERRLV 128
           +VPK+RR++
Sbjct: 119 FVPKDRRVI 127


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.144    0.438 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54714275
Number of Sequences: 2977
Number of extensions: 2322647
Number of successful extensions: 3962
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3957
Number of HSP's gapped (non-prelim): 3
length of query: 129
length of database: 189,106,746
effective HSP length: 48
effective length of query: 81
effective length of database: 160,379,370
effective search space: 12990728970
effective search space used: 12990728970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)