BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0674 (PAB0674) DE:Hypothetical protein
         (237 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75076 hypothetical protein PAB0674 - Pyrococcus abyssi (st...   457  e-128
pir||A71068 hypothetical protein PH1239 - Pyrococcus horikoshii ...   375  e-103

>pir||G75076 hypothetical protein PAB0674 - Pyrococcus abyssi (strain Orsay)
           >gi|5458428|emb|CAB49916.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 237
           
 Score =  457 bits (1163), Expect = e-128
 Identities = 237/237 (100%), Positives = 237/237 (100%)

Query: 1   MKAEFKYLLLIILLSFGLSSIILSSINLTNFIPQFFTLAIVDSVNPCTFVVYTIFLIALS 60
           MKAEFKYLLLIILLSFGLSSIILSSINLTNFIPQFFTLAIVDSVNPCTFVVYTIFLIALS
Sbjct: 1   MKAEFKYLLLIILLSFGLSSIILSSINLTNFIPQFFTLAIVDSVNPCTFVVYTIFLIALS 60

Query: 61  VKGLPKRALYVVGLAFIFAVYLSYYTLGIGLMILTGKIPVKWAGYLAIAFGVYEIVTGIL 120
           VKGLPKRALYVVGLAFIFAVYLSYYTLGIGLMILTGKIPVKWAGYLAIAFGVYEIVTGIL
Sbjct: 61  VKGLPKRALYVVGLAFIFAVYLSYYTLGIGLMILTGKIPVKWAGYLAIAFGVYEIVTGIL 120

Query: 121 EKSRTVGKGRLRKLAFSTQATVIGGIILGFAVSTTLLPCSMGPYIVFNTIISKMKALAYL 180
           EKSRTVGKGRLRKLAFSTQATVIGGIILGFAVSTTLLPCSMGPYIVFNTIISKMKALAYL
Sbjct: 121 EKSRTVGKGRLRKLAFSTQATVIGGIILGFAVSTTLLPCSMGPYIVFNTIISKMKALAYL 180

Query: 181 LLALYNLIFVLPLFVILFAMGSLRESKNFSREMVKHSRELSVIAGILLIGIGVWVLL 237
           LLALYNLIFVLPLFVILFAMGSLRESKNFSREMVKHSRELSVIAGILLIGIGVWVLL
Sbjct: 181 LLALYNLIFVLPLFVILFAMGSLRESKNFSREMVKHSRELSVIAGILLIGIGVWVLL 237


>pir||A71068 hypothetical protein PH1239 - Pyrococcus horikoshii
           >gi|3257656|dbj|BAA30339.1| (AP000005) 237aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 237
           
 Score =  375 bits (952), Expect = e-103
 Identities = 179/237 (75%), Positives = 214/237 (89%)

Query: 1   MKAEFKYLLLIILLSFGLSSIILSSINLTNFIPQFFTLAIVDSVNPCTFVVYTIFLIALS 60
           MK E KYLL+II ++FGLSS+ L  + L+ FIPQFF+LAI+DS+NPCTFVVYTIFLIALS
Sbjct: 1   MKREIKYLLIIIGIAFGLSSLSLGLLGLSKFIPQFFSLAILDSINPCTFVVYTIFLIALS 60

Query: 61  VKGLPKRALYVVGLAFIFAVYLSYYTLGIGLMILTGKIPVKWAGYLAIAFGVYEIVTGIL 120
           VKGLPK++LY+VGLAFI AVY+SYY+LG+GL+I+TGKIPV WAGYLA+  G+Y IVTGIL
Sbjct: 61  VKGLPKKSLYIVGLAFIVAVYISYYSLGVGLVIITGKIPVSWAGYLAVILGIYNIVTGIL 120

Query: 121 EKSRTVGKGRLRKLAFSTQATVIGGIILGFAVSTTLLPCSMGPYIVFNTIISKMKALAYL 180
           EKSRTVGKG+LRKLAFS + T++GG+ILGF VS TLLPCSMGPY+V+ TI+SKMK LAYL
Sbjct: 121 EKSRTVGKGKLRKLAFSVEGTMVGGLILGFMVSLTLLPCSMGPYVVYATIVSKMKLLAYL 180

Query: 181 LLALYNLIFVLPLFVILFAMGSLRESKNFSREMVKHSRELSVIAGILLIGIGVWVLL 237
           +LALYNLIFVLPLFVILF MGSL +SK+FSR +VKHSRELSV++GILLIGIG W+L+
Sbjct: 181 MLALYNLIFVLPLFVILFGMGSLTDSKSFSRTIVKHSRELSVVSGILLIGIGAWILM 237


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.147    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76805521
Number of Sequences: 2977
Number of extensions: 3009938
Number of successful extensions: 14683
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14681
Number of HSP's gapped (non-prelim): 2
length of query: 237
length of database: 189,106,746
effective HSP length: 52
effective length of query: 185
effective length of database: 157,985,422
effective search space: 29227303070
effective search space used: 29227303070
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)