BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0675 (PAB0675) DE:MOLYBDENUM FORMYLMETHANOFURAN
DEHYDROGENASE SUBUNIT FMDE related
         (231 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75076 molybdenum formylmethanofuran dehydrogenas E chain f...   467  e-131
pir||H71067 hypothetical protein PH1238 - Pyrococcus horikoshii ...   355  3e-97
gi|11498045 conserved hypothetical protein [Archaeoglobus fulgid...   242  3e-63
gi|11497794 tungsten formylmethanofuran dehydrogenase, subunit E...   100  2e-20
pir||G69045 conserved hypothetical protein MTH1345 - Methanobact...    94  1e-18
pir||B75580 conserved hypothetical protein - Deinococcus radiodu...    79  5e-14
emb|CAC12236.1| (AL445066) conserved hypothetical protein [Therm...    78  1e-13

>pir||H75076 molybdenum formylmethanofuran dehydrogenas E chain fmde related
           PAB0675 - Pyrococcus abyssi (strain Orsay)
           >gi|5458429|emb|CAB49917.1| (AJ248286) MOLYBDENUM
           FORMYLMETHANOFURAN DEHYDROGENAS E SUBUNIT FMDE related
           [Pyrococcus abyssi]
           Length = 231
           
 Score =  467 bits (1190), Expect = e-131
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MGKLNELVERGDAEGILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESI 60
           MGKLNELVERGDAEGILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESI
Sbjct: 1   MGKLNELVERGDAEGILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESI 60

Query: 61  LAIVETNSCFTDGVQVTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSY 120
           LAIVETNSCFTDGVQVTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSY
Sbjct: 61  LAIVETNSCFTDGVQVTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSY 120

Query: 121 YPPEATELFEKVVKERRGTSEEREKLRELWEELGRKFLYLPRKVFEIKRIKVPPIEQAPI 180
           YPPEATELFEKVVKERRGTSEEREKLRELWEELGRKFLYLPRKVFEIKRIKVPPIEQAPI
Sbjct: 121 YPPEATELFEKVVKERRGTSEEREKLRELWEELGRKFLYLPRKVFEIKRIKVPPIEQAPI 180

Query: 181 FESVRCSECGELVMSPKVVYVNEKPLCKVCANKKILAVIGRGIVELEGFRV 231
           FESVRCSECGELVMSPKVVYVNEKPLCKVCANKKILAVIGRGIVELEGFRV
Sbjct: 181 FESVRCSECGELVMSPKVVYVNEKPLCKVCANKKILAVIGRGIVELEGFRV 231


>pir||H71067 hypothetical protein PH1238 - Pyrococcus horikoshii
           >gi|3257655|dbj|BAA30338.1| (AP000005) 231aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 231
           
 Score =  355 bits (901), Expect = 3e-97
 Identities = 169/227 (74%), Positives = 191/227 (83%)

Query: 1   MGKLNELVERGDAEGILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESI 60
           M  LN  ++    + IL YA+ FHGH+CPYLALGIR+SLIAMEEL V RL    SVDESI
Sbjct: 1   MENLNLAIKEKKFDVILEYAKVFHGHICPYLALGIRSSLIAMEELSVNRLGLEESVDESI 60

Query: 61  LAIVETNSCFTDGVQVTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSY 120
           LAIVETNSCF DGVQVTTGCT GNNSLI++D GKTALTLVKRG+WEGVRVYVDAEKL+ Y
Sbjct: 61  LAIVETNSCFADGVQVTTGCTFGNNSLIFLDTGKTALTLVKRGNWEGVRVYVDAEKLKDY 120

Query: 121 YPPEATELFEKVVKERRGTSEEREKLRELWEELGRKFLYLPRKVFEIKRIKVPPIEQAPI 180
           YPP A ELFEKV+K R GT EE+ KL +LWEE GRKFLYLP+++FE+K++KV PIEQAPI
Sbjct: 121 YPPGAIELFEKVIKRREGTPEEKRKLSKLWEETGRKFLYLPKEIFEVKKVKVSPIEQAPI 180

Query: 181 FESVRCSECGELVMSPKVVYVNEKPLCKVCANKKILAVIGRGIVELE 227
           FESVRCS CGELVM+PK VY+N KP CKVCA K+IL VIGRGIVELE
Sbjct: 181 FESVRCSRCGELVMAPKAVYINGKPFCKVCAGKEILGVIGRGIVELE 227


>gi|11498045 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|3915359|sp|O29816|Y433_ARCFU HYPOTHETICAL PROTEIN
           AF0433 >gi|7483009|pir||A69304 conserved hypothetical
           protein AF0433 - Archaeoglobus fulgidus
           >gi|2650198|gb|AAB90804.1| (AE001075) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 366
           
 Score =  242 bits (611), Expect = 3e-63
 Identities = 119/213 (55%), Positives = 157/213 (72%), Gaps = 6/213 (2%)

Query: 16  ILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESILAIVETNSCFTDGVQ 75
           +L  A+EFHGH+CP++ALG+R S+IAME+LGV   D   SV E ILAIVE N+C TDGVQ
Sbjct: 154 LLLRAKEFHGHICPFVALGVRMSVIAMEKLGVEE-DAMASVGEDILAIVECNNCLTDGVQ 212

Query: 76  VTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSYYPPEATELFEKVVKE 135
           V TGCTLGNNSLIY+D+GK ALT+V+R  W+GVRVYV+AE +R Y+  EA ELF KV+  
Sbjct: 213 VATGCTLGNNSLIYLDLGKNALTIVRRKDWKGVRVYVNAENVRKYFSKEALELFNKVIVR 272

Query: 136 RRGTSEEREKLRELWEELGRKFLYLPRKVFEIKRIKVPPIEQAPIFESVRCSECGELVMS 195
           R G+ E+ ++L E WEE G K L +P + F+++ ++V PIE+APIFE+ RC +CGEL M+
Sbjct: 273 REGSEEDAKRLSEFWEETGWKMLEIPEEEFKVEFVEVQPIERAPIFENKRCEKCGELAMA 332

Query: 196 PKVVYVNEKPLCKVCANKKILAVIGRGIVELEG 228
            +V    +  LC  CA     AV+GRGIV+ +G
Sbjct: 333 TRV----KDGLCLRCAG-SYYAVVGRGIVKFDG 360


>gi|11497794 tungsten formylmethanofuran dehydrogenase, subunit E (fwdE)
           [Archaeoglobus fulgidus] >gi|7450958|pir||A69272
           tungsten formylmethanofuran dehydrogenase, subunit E
           (fwdE) homolog - Archaeoglobus fulgidus
           >gi|2650468|gb|AAB91055.1| (AE001094) tungsten
           formylmethanofuran dehydrogenase, subunit E (fwdE)
           [Archaeoglobus fulgidus]
           Length = 189
           
 Score =  100 bits (246), Expect = 2e-20
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 24/205 (11%)

Query: 12  DAEGILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESILAIVETNSCFT 71
           D   +L +A + H H+ P +ALGI+ + IA E+LGV   ++ G   + ++ I ET  C  
Sbjct: 2   DRNEMLEFAAKLHSHLSPGVALGIKMAQIAYEKLGV---NFRG---KGLVGIAETAMCLP 55

Query: 72  DGVQVTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSYYPPEATELFEK 131
           D +QV  G T GN +LI  D GK AL +V+  + EG RV +  E  +       +EL +K
Sbjct: 56  DALQVVAGTTPGNRNLIVKDYGKLALAIVRFDTREGYRVTIKKEAAKK------SELIKK 109

Query: 132 VVKERRGTSEEREKLRELWEELGRKFLYLPRKVFEIKRIKVP-PI--EQAPIFESVRCSE 188
            +      ++E EK       L  +FL L  + FE++ I++  P+   + PI   V C +
Sbjct: 110 FLYRLGKLNKEEEK------RLAEEFLNLEPEYFEVREIRLTIPVGGTKEPI---VECEK 160

Query: 189 CGELVMSPKVVYVNEKPLCKVCANK 213
           CGEL  S  V  V+ + +C +CA K
Sbjct: 161 CGELQPSDYVAEVDGRMVCFMCAGK 185


>pir||G69045 conserved hypothetical protein MTH1345 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622451|gb|AAB85822.1| (AE000897) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 198
           
 Score = 94.0 bits (230), Expect = 1e-18
 Identities = 62/188 (32%), Positives = 89/188 (46%), Gaps = 28/188 (14%)

Query: 23  FHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESILAIVETNSCFTDGVQVTTGCTL 82
           FHGH C   ALG +   I  E  G        S DE I+A+VE +SC  D +Q  TGCT 
Sbjct: 36  FHGHSCAGTALGYKVGEIVAERFG-------RSEDEEIVAVVENDSCSIDAIQFMTGCTF 88

Query: 83  GNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSYYPPEATELFEKVVKERRGTSEE 142
           G  +LI+ D GK   T   R + +G+R+        S   P    + E  V +R   +E 
Sbjct: 89  GKGNLIFRDYGKHVYTFFNRKTGDGIRI--------SLKKPMDQLMKELGVTDR---AEL 137

Query: 143 REKLRELWEELGRKFLYLPRKVFEIKRIKVPPIEQAPIFESVRCSECGELVMSPKVVYVN 202
            EK+ E+           P  +FE++ +   P E+A I+ S+ C+ECGE V   +    N
Sbjct: 138 TEKILEM----------DPHDLFEVRDVSEKPPEEARIYGSIICAECGEPVSEHRARVKN 187

Query: 203 EKPLCKVC 210
            + +C  C
Sbjct: 188 GRMVCIPC 195


>pir||B75580 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1) >gi|6460672|gb|AAF12377.1|AE001863_2 (AE001863)
           conserved hypothetical protein [Deinococcus radiodurans]
           Length = 198
           
 Score = 78.8 bits (191), Expect = 5e-14
 Identities = 62/208 (29%), Positives = 97/208 (45%), Gaps = 27/208 (12%)

Query: 16  ILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESILAIVETNSCFTDGVQ 75
           +L  +   HGH+CP   LG+R +L+A E LG   LD+  S D+  L  VET+ CF DGV 
Sbjct: 14  LLARSSALHGHLCPRQVLGVRLALLAGETLG---LDFPRS-DKRALVFVETDGCFADGVS 69

Query: 76  VTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSYYPPEATELFEKVVKE 135
           V +GC LG  +L  +D GK A  +V   S   VRV               T+L  +V   
Sbjct: 70  VGSGCWLGRRTLRLVDHGKVAAAVVDTRSGRAVRV------------RPQTDLRARV--- 114

Query: 136 RRGTSEEREKLRELWEELGRKFLYLPRKVFEIK----RIKVPPIEQAPIFESVRCSECGE 191
           R G  E + + +     L     +    +F+++    R  +  +  A    +V C  CGE
Sbjct: 115 RAGRPEGQTRYQAY---LDAYQTWPDADLFDVQPVDLRFDLAALVSAAGKRAV-CDRCGE 170

Query: 192 LVMSPKVVYVNEKPLCKVCANKKILAVI 219
            +++ + V   ++ LC+ CA      ++
Sbjct: 171 EIVNEREVVQGDETLCRGCAGDSYFTLL 198


>emb|CAC12236.1| (AL445066) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 203
           
 Score = 77.6 bits (188), Expect = 1e-13
 Identities = 59/198 (29%), Positives = 90/198 (44%), Gaps = 12/198 (6%)

Query: 15  GILNYAREFHGHVCPYLALGIRASLIAMEELGVGRLDYSGSVDESILAIVETNSCFTDGV 74
           GI  +A EFHGH CPY+ +G RA   A++  G+ +     +   S ++  + N CF DG 
Sbjct: 7   GIPEWAFEFHGHKCPYMPMGYRAGSYALKIAGLEKEKDHRTYLLSEMSPEDMNGCFNDGA 66

Query: 75  QVTTGCTLGNNSLIYIDVGKTALTLVKRGSWEGVRVYVDAEKLRSYYPPEATELFEKVVK 134
           Q  TGCT G      +  GK AL L + G  + +RV+V     R+ +  E +       +
Sbjct: 67  QAATGCTYGKGLFSLLGYGKLALILYRPGR-KAIRVHV-----RNSFMDELSTRASDFFR 120

Query: 135 ERRGTSEEREKLRELWEELGRKFLYLP-RKVFEIKRIKVPPIEQAPIFES---VRCSECG 190
            R+   E  E      + +      L   ++FE + I     E  P+ ++   VRC  CG
Sbjct: 121 YRKQGYEPSEIPAGAIDPVLEWISSLEDEEIFEYREIDGFTFE--PVKKNGAKVRCDVCG 178

Query: 191 ELVMSPKVVYVNEKPLCK 208
           E         +N KP+CK
Sbjct: 179 EYTYEADAKLLNGKPVCK 196


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84593743
Number of Sequences: 2977
Number of extensions: 3390293
Number of successful extensions: 10120
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10106
Number of HSP's gapped (non-prelim): 10
length of query: 231
length of database: 189,106,746
effective HSP length: 54
effective length of query: 177
effective length of database: 156,788,448
effective search space: 27751555296
effective search space used: 27751555296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)