BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0676 (HEMV-3) DE:IRON (III) ABC TRANSPORTER, ATP-BINDING
PROTEIN (HEMV-3)
(366 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75077 iron (iii) abc transporter, ATP-binding protein (hem... 740 0.0
pir||G71067 hypothetical protein PH1237 - Pyrococcus horikoshii ... 661 0.0
pir||E72406 hypothetical protein TM0189 - Thermotoga maritima (s... 506 e-142
sp|Q57550|Y085_METJA HYPOTHETICAL PROTEIN MJ0085 >gi|2129082|pir... 453 e-126
gi|11498044 iron (III) ABC transporter, ATP-binding protein (hem... 431 e-120
sp|P44206|YE72_HAEIN HYPOTHETICAL PROTEIN HI1472 PRECURSOR >gi|1... 102 5e-21
pir||C71046 hypothetical protein PH1659 - Pyrococcus horikoshii ... 85 1e-15
pir||A75169 probable iron (III) ABC transporter, periplasmic-bin... 81 2e-14
pir||G70046 iron-binding protein homolog yvrC - Bacillus subtili... 77 4e-13
pir||S62196 hypothetical protein 2 - Methanosarcina barkeri >gi|... 75 1e-12
>pir||A75077 iron (iii) abc transporter, ATP-binding protein (hemv-3) PAB0676 -
Pyrococcus abyssi (strain Orsay)
>gi|5458430|emb|CAB49918.1| (AJ248286) IRON (III) ABC
TRANSPORTER, ATP-BINDING PROTEIN (HEMV-3) [Pyrococcus
abyssi]
Length = 366
Score = 740 bits (1890), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MKRILALILVAFILGCIGENPSSSKGVTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYL 60
MKRILALILVAFILGCIGENPSSSKGVTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYL
Sbjct: 1 MKRILALILVAFILGCIGENPSSSKGVTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYL 60
Query: 61 NASDMVVGVEDFEKRYSFGRPYIIAHPELKELPSIGPGGPGKLPNLEAIMELKPDVIFAT 120
NASDMVVGVEDFEKRYSFGRPYIIAHPELKELPSIGPGGPGKLPNLEAIMELKPDVIFAT
Sbjct: 61 NASDMVVGVEDFEKRYSFGRPYIIAHPELKELPSIGPGGPGKLPNLEAIMELKPDVIFAT 120
Query: 121 YIDERTANDIQEKTGIPVVVLSYGELSNFTDEELFNSLKLAGKILGKEERAEEVISFIKS 180
YIDERTANDIQEKTGIPVVVLSYGELSNFTDEELFNSLKLAGKILGKEERAEEVISFIKS
Sbjct: 121 YIDERTANDIQEKTGIPVVVLSYGELSNFTDEELFNSLKLAGKILGKEERAEEVISFIKS 180
Query: 181 VEEDLRKRTEGVKEKKVYVGGIGYKGAHGIESTKADYPPFEVVHAYNVASVLGKGHKFID 240
VEEDLRKRTEGVKEKKVYVGGIGYKGAHGIESTKADYPPFEVVHAYNVASVLGKGHKFID
Sbjct: 181 VEEDLRKRTEGVKEKKVYVGGIGYKGAHGIESTKADYPPFEVVHAYNVASVLGKGHKFID 240
Query: 241 KEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGKVYGLLPYNFYATNIGTA 300
KEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGKVYGLLPYNFYATNIGTA
Sbjct: 241 KEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGKVYGLLPYNFYATNIGTA 300
Query: 301 MADAYFIGKVLYPDRFKDVDPVKKADEIYEFLVGKPVYKVLAEQFGGFGRIDLKNGSVKY 360
MADAYFIGKVLYPDRFKDVDPVKKADEIYEFLVGKPVYKVLAEQFGGFGRIDLKNGSVKY
Sbjct: 301 MADAYFIGKVLYPDRFKDVDPVKKADEIYEFLVGKPVYKVLAEQFGGFGRIDLKNGSVKY 360
Query: 361 SLPQNP 366
SLPQNP
Sbjct: 361 SLPQNP 366
>pir||G71067 hypothetical protein PH1237 - Pyrococcus horikoshii
>gi|3257654|dbj|BAA30337.1| (AP000005) 366aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 366
Score = 661 bits (1686), Expect = 0.0
Identities = 315/366 (86%), Positives = 347/366 (94%)
Query: 1 MKRILALILVAFILGCIGENPSSSKGVTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYL 60
MKR+L++IL+AFILGCI +S+ GVT+KDMLGR+V+VPKEVHRIVAVGPGCLRIIVYL
Sbjct: 1 MKRLLSIILIAFILGCINTGQTSTTGVTVKDMLGRTVDVPKEVHRIVAVGPGCLRIIVYL 60
Query: 61 NASDMVVGVEDFEKRYSFGRPYIIAHPELKELPSIGPGGPGKLPNLEAIMELKPDVIFAT 120
NA++MVVGVEDFEKRYSFGRPYIIAHPELK LPSIGPGGPGKLPNLEAIM+LKPD+IFAT
Sbjct: 61 NATNMVVGVEDFEKRYSFGRPYIIAHPELKNLPSIGPGGPGKLPNLEAIMKLKPDIIFAT 120
Query: 121 YIDERTANDIQEKTGIPVVVLSYGELSNFTDEELFNSLKLAGKILGKEERAEEVISFIKS 180
YIDE+TANDIQ+KTGIPVVVLSYGELSNFTDEE F+SL+LAGKILG+E+RAE++ISFIKS
Sbjct: 121 YIDEKTANDIQKKTGIPVVVLSYGELSNFTDEEFFSSLRLAGKILGREKRAEDIISFIKS 180
Query: 181 VEEDLRKRTEGVKEKKVYVGGIGYKGAHGIESTKADYPPFEVVHAYNVASVLGKGHKFID 240
EEDLRKRTE VK KKVYVGGIGYKGAHGIESTKADYPPFEV+ AYNVAS LGKGHKFID
Sbjct: 181 AEEDLRKRTEKVKPKKVYVGGIGYKGAHGIESTKADYPPFEVLRAYNVASALGKGHKFID 240
Query: 241 KEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGKVYGLLPYNFYATNIGTA 300
KE LLKWQPEYIFIDEGGL+LIL+DYKKNP+FY SL+AVKEGK+YGLLPYNFY+TNIGTA
Sbjct: 241 KEILLKWQPEYIFIDEGGLRLILDDYKKNPEFYRSLRAVKEGKLYGLLPYNFYSTNIGTA 300
Query: 301 MADAYFIGKVLYPDRFKDVDPVKKADEIYEFLVGKPVYKVLAEQFGGFGRIDLKNGSVKY 360
+ADAYFIGKVLYP+ FKDVDP KKADEIY FLVGKPVYKVLAEQFGGFG+IDL+NG V Y
Sbjct: 301 IADAYFIGKVLYPEEFKDVDPEKKADEIYSFLVGKPVYKVLAEQFGGFGKIDLENGKVAY 360
Query: 361 SLPQNP 366
SLPQNP
Sbjct: 361 SLPQNP 366
>pir||E72406 hypothetical protein TM0189 - Thermotoga maritima (strain MSB8)
>gi|4980685|gb|AAD35281.1|AE001704_2 (AE001704)
iron(III) ABC transporter, periplasmic iron-binding
protein, putative [Thermotoga maritima]
Length = 358
Score = 506 bits (1288), Expect = e-142
Identities = 235/335 (70%), Positives = 283/335 (84%)
Query: 24 SKGVTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYLNASDMVVGVEDFEKRYSFGRPYI 83
S+G+ IKD+LGR VE+P V+RIVAVGPG LR+I YL A+DMVVGVEDFEK +GRPYI
Sbjct: 19 SEGIVIKDLLGREVEIPSNVNRIVAVGPGALRLIAYLKATDMVVGVEDFEKLRPYGRPYI 78
Query: 84 IAHPELKELPSIGPGGPGKLPNLEAIMELKPDVIFATYIDERTANDIQEKTGIPVVVLSY 143
+A+PELK+LPS+GPGGPGKLP+LE+++ L+PDV+F TY+D +TA DIQEKTGIPVVVLSY
Sbjct: 79 LAYPELKKLPSVGPGGPGKLPDLESLITLQPDVVFITYVDRKTAKDIQEKTGIPVVVLSY 138
Query: 144 GELSNFTDEELFNSLKLAGKILGKEERAEEVISFIKSVEEDLRKRTEGVKEKKVYVGGIG 203
G L F DE+LF S++LAGKILG+EERA EV+ FI+ +EDL R+EGV+ VYVGGIG
Sbjct: 139 GNLGTFEDEDLFRSIELAGKILGREERAHEVVDFIRKAQEDLVTRSEGVESPTVYVGGIG 198
Query: 204 YKGAHGIESTKADYPPFEVVHAYNVASVLGKGHKFIDKEALLKWQPEYIFIDEGGLKLIL 263
YKGAHGI+ST+A YPPF V+HA NV LG+GHKFID E LL W PEYIFIDE GL L+L
Sbjct: 199 YKGAHGIDSTEAKYPPFVVLHARNVVDELGEGHKFIDPEKLLVWNPEYIFIDENGLSLVL 258
Query: 264 EDYKKNPDFYESLKAVKEGKVYGLLPYNFYATNIGTAMADAYFIGKVLYPDRFKDVDPVK 323
+DY K+ +FYESL AVK GKVYG+LPYN+Y TNIGTA+ADAYFIGKVLYP+RF D+DP +
Sbjct: 259 DDYSKHREFYESLSAVKRGKVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDIDPEE 318
Query: 324 KADEIYEFLVGKPVYKVLAEQFGGFGRIDLKNGSV 358
KADEIYEFL+GK VY +AEQFGGFG+IDL +G +
Sbjct: 319 KADEIYEFLLGKRVYGEMAEQFGGFGKIDLPSGRI 353
>sp|Q57550|Y085_METJA HYPOTHETICAL PROTEIN MJ0085 >gi|2129082|pir||E64310 iron transport
system binding protein - Methanococcus jannaschii
>gi|1590868|gb|AAB98067.1| (U67466) iron transport
periplasmic binding protein, putative (ceuE)
[Methanococcus jannaschii]
Length = 373
Score = 453 bits (1153), Expect = e-126
Identities = 224/372 (60%), Positives = 288/372 (77%), Gaps = 17/372 (4%)
Query: 1 MKRILALILVAFIL----GCIGEN-----PSSSKG---VTIKDMLGRSVEVPKEVHRIVA 48
+K+++ L+ + I GC+ +N P++S+ + + D+ GR VEVPKEV+RIV
Sbjct: 2 LKKLIGLLTILIIAVGFCGCMEQNIEKQTPTASEAPNTIKVVDLYGREVEVPKEVNRIVC 61
Query: 49 VGPGCLRIIVYLNASDMVVGVEDFEKRYS-FGRPYIIAHPELKELPSIGPGGPGKLPNLE 107
GPGCLR+IVYLNA+D VVGVED EK+++ + RPY IAHPEL LP+IG GGP PN E
Sbjct: 62 CGPGCLRLIVYLNATDKVVGVEDTEKKWTPWTRPYRIAHPELANLPTIGQGGPCPKPNPE 121
Query: 108 AIMELKPDVIFATYIDERTANDIQEKTGIPVVVLSYGELSNFTDEELFNSLKLAGKILGK 167
AI+++KPDVIF TY+ + + +Q+KTGIPVVVLSYG+L+ F +E+LF SL+LAGKILGK
Sbjct: 122 AIIQVKPDVIFVTYMPKDEVDALQQKTGIPVVVLSYGQLATFNNEDLFKSLELAGKILGK 181
Query: 168 EERAEEVISFIKSVEEDLRKRTEGVKEKK---VYVGGIGYKGAHGIESTKADYPPFEVVH 224
EERA+EVI FIK+ + DL +RT+ + + K VYVGGIGYKG HGI+ST+ YPPF V+
Sbjct: 182 EERAKEVIEFIKNCQNDLNERTKDIPDDKKPSVYVGGIGYKGLHGIDSTECKYPPFVAVN 241
Query: 225 AYNVASVLGK-GHKFIDKEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGK 283
A NVA LGK GH F+ KE +LKW P+ IFIDEGGLKL++EDYK+N +FY SLKA K G
Sbjct: 242 AKNVADELGKEGHVFVTKEQILKWNPDIIFIDEGGLKLVVEDYKRNKEFYNSLKAFKNGD 301
Query: 284 VYGLLPYNFYATNIGTAMADAYFIGKVLYPDRFKDVDPVKKADEIYEFLVGKPVYKVLAE 343
VYGLLPYNFY TNIGTA+ADAY+IGKV+YPDRFKD+DP +KADEI+ FLVGKPVYK + E
Sbjct: 302 VYGLLPYNFYTTNIGTALADAYYIGKVVYPDRFKDIDPEQKADEIFTFLVGKPVYKEMKE 361
Query: 344 QFGGFGRIDLKN 355
+ GGF +++ +
Sbjct: 362 KLGGFKKLEFSS 373
>gi|11498044 iron (III) ABC transporter, ATP-binding protein (hemV-2)
[Archaeoglobus fulgidus] >gi|7483832|pir||H69303 iron
(III) ABC transporter, ATP-binding protein (hemV-2)
homolog - Archaeoglobus fulgidus
>gi|2650199|gb|AAB90805.1| (AE001075) iron (III) ABC
transporter, ATP-binding protein (hemV-2) [Archaeoglobus
fulgidus]
Length = 366
Score = 431 bits (1096), Expect = e-120
Identities = 212/355 (59%), Positives = 269/355 (75%), Gaps = 7/355 (1%)
Query: 4 ILALILVAFILGCIGENPSSSKG--VTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYLN 61
+LAL L I GC + +G VT+ DMLGR+VEVP++V R+VA+GPG LR++VYLN
Sbjct: 6 LLALALAILIAGCAQQPAQVKEGGKVTVTDMLGRTVEVPEKVERVVAIGPGALRLVVYLN 65
Query: 62 ASDMVVGVEDFEKRY-SFGRPYIIAHPELKELPSIGPGGPGKLPNLEAIMELKPDVIFAT 120
ASD VVGVED E + GRPY +AHPE LP+IG GGP PN EAI+ +KPDVIFA
Sbjct: 66 ASDKVVGVEDAETNWPEMGRPYRMAHPEFANLPTIGKGGPNPSPNAEAIVAVKPDVIFAC 125
Query: 121 YIDERTANDIQEKTGIPVVVLSYGELSNFTDEELFNSLKLAGKILGKEERAEEVISFIKS 180
YID A+ +Q++TG+PVVVLSYGEL NF EE++ SL+LAGKILG+EERA+E+ISFI++
Sbjct: 126 YIDATQADTLQQQTGVPVVVLSYGELGNFRAEEIYTSLRLAGKILGREERAKEIISFIEN 185
Query: 181 VEEDLRKRTEGVKEKK---VYVGGIGYKGAHGIESTKADYPPFEVVHAYNVASVLG-KGH 236
+DL R EGV E+ VYVG +G+KG HGIEST+ ++PPF VV A NVA G
Sbjct: 186 AYKDLTGRVEGVPEENKLSVYVGALGFKGGHGIESTQCNFPPFMVVRAKNVACEANVSGA 245
Query: 237 KFIDKEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGKVYGLLPYNFYATN 296
FIDKE LL+W P+ IF+DE L L+L DY+KNP+ Y+SLKA K GK+YG+LP+N+Y TN
Sbjct: 246 FFIDKEKLLEWDPDIIFLDENNLHLVLNDYEKNPEIYQSLKAFKNGKIYGILPFNYYTTN 305
Query: 297 IGTAMADAYFIGKVLYPDRFKDVDPVKKADEIYEFLVGKPVYKVLAEQFGGFGRI 351
I TA+AD+YFIGKVLYPD+F D+DP KKAD+I+EFLVGK +Y+ +AE +GGF I
Sbjct: 306 IETAIADSYFIGKVLYPDKFADIDPGKKADKIFEFLVGKKLYEQMAEHYGGFKNI 360
>sp|P44206|YE72_HAEIN HYPOTHETICAL PROTEIN HI1472 PRECURSOR >gi|1074791|pir||I64030
hypothetical protein HI1472 - Haemophilus influenzae
(strain Rd KW20) >gi|1574313|gb|AAC23120.1| (U32825)
iron chelatin ABC transporter, periplasmic-binding
protein, putative [Haemophilus influenzae Rd]
Length = 351
Score = 102 bits (253), Expect = 5e-21
Identities = 101/352 (28%), Positives = 169/352 (47%), Gaps = 43/352 (12%)
Query: 5 LALILVAFILGCIGENPSSSKGVTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYLNASD 64
L +L+A +L + + + + +T D L R V +P ++R V + L I V L+A+
Sbjct: 3 LKSLLIACLLSSLSFSALADRIIT--DQLDRKVTIPDHINRAVVLQHQTLNIAVQLDATK 60
Query: 65 MVVGVEDFEKRYSFGRPYIIAHPELKELPSIGPGGPGKLP--NLEAIMELKPDVIFAT-Y 121
+VGV K+ G+ Y+ PEL+ + PG L N+E+++ LKPDV+F T Y
Sbjct: 61 QIVGVLSNWKK-QLGKNYVRLAPELENMAM-----PGDLNSVNIESLLALKPDVVFVTNY 114
Query: 122 IDERTANDIQEKTGIPVVVLSY--------GELS-NFTDEE------LFNSLKLAGKILG 166
I + IPVV +S G+L+ TDE+ L ++L ++
Sbjct: 115 APSEMIKQISD-VNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFE 173
Query: 167 KEERAEEVISFIKSVEEDLRKRTEGV---KEKKVYVGGIGYKGAHGIESTKADYPPFEVV 223
K+++ +E++ + + L R V K + Y+ G +G S K E
Sbjct: 174 KKQQGDELVKAAFANRKLLADRLGDVSADKRVRTYMANPDL-GTYG--SGKYTGLMMEHA 230
Query: 224 HAYNVASVLGKGHKFIDKEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGK 283
AYNVA+ KG K + E +L+W P I + + ++ + N + +++A+K+ K
Sbjct: 231 GAYNVAAATIKGFKQVSLENVLEWNPAVILVQDRYPDVVPQIL--NDQGWANIQALKDKK 288
Query: 284 VYGLLPYNFYATNIGTAMADAYFIG-----KVLYPDRFKDVDPVKKADEIYE 330
V+ L+P YA G M +A +G K LYP RF+DVD K ++ Y+
Sbjct: 289 VF-LMPE--YAKAWGYPMPEALALGEVWLAKALYPQRFQDVDLDKMVNDYYQ 337
>pir||C71046 hypothetical protein PH1659 - Pyrococcus horikoshii
>gi|3258088|dbj|BAA30771.1| (AP000006) 345aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 345
Score = 85.0 bits (207), Expect = 1e-15
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 25/183 (13%)
Query: 27 VTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYLNASDMVVGV---EDFEKRYSFGRPYI 83
+TI D LGR V + KE RIV++ P + ++ A D VVGV +DF GR I
Sbjct: 65 LTIVDSLGRRVTIEKEPQRIVSLAPSITETLYFIGALDKVVGVTKFDDFPPGVKKGRTII 124
Query: 84 IAHPELKELPSIGPGGPGKLPNLEAIMELKPDVIFATYIDERTANDIQEKTGIPVVVLSY 143
G PN+E I LKPD+I T + + + +QE PVV++
Sbjct: 125 ---------------GDFSNPNIEVIASLKPDLIIGTSLHIKYLDKLQEIA--PVVIVDP 167
Query: 144 GELSNFTDEELFNSLKLAGKILGKEERAEEVISFIKSVEEDLRKRTEGVKEKKVYVGGIG 203
+ +E+++ + GKI+ +EE A+ V++++K++ ED++ +TE + KV+
Sbjct: 168 KNI-----DEIYDWIIKLGKIVNREEEAKGVVNYMKAIVEDIKAKTENATKVKVFYLVSY 222
Query: 204 YKG 206
Y+G
Sbjct: 223 YEG 225
>pir||A75169 probable iron (III) ABC transporter, periplasmic-binding protein
PAB0349 - Pyrococcus abyssi (strain Orsay)
>gi|5457942|emb|CAB49432.1| (AJ248284) IRON (III) ABC
transporter, periplasmic-binding protein, putative
[Pyrococcus abyssi]
Length = 349
Score = 81.1 bits (197), Expect = 2e-14
Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 25/260 (9%)
Query: 27 VTIKDMLGRSVEVPKEVHRIVAVGPGCLRIIVYLNASDMVVGVEDFEKRYSFGRPYIIAH 86
+TI D LGR V + KE RIV++ P + ++ A D VVGV F+
Sbjct: 69 LTITDSLGRKVTIKKEPQRIVSLAPSITETLYFIGALDKVVGVTSFDD----------FP 118
Query: 87 PELKELPSIGPGGPGKLPNLEAIMELKPDVIFATYIDERTANDIQEKTGIPVVVLSYGEL 146
P +++ +I G G PN+E I LKPD+I T + + + +++ PV+++ +
Sbjct: 119 PGVQKGRTIIGGFSG--PNIEVIASLKPDLIIGTSMHIKYLDKLEQIA--PVIIVDPKNI 174
Query: 147 SNFTDEELFNSLKLAGKILGKEERAEEVISFIKSVEEDLRKRTEGVKEKKVYVGGIGYKG 206
+E++ + GK++ +EE A+ V++++K++ ED++ +T + KV+ Y G
Sbjct: 175 -----DEIYEWIIKLGKVVNREEEAKGVVNYMKAIVEDIKTKTSNASKVKVFFLLSTYGG 229
Query: 207 AHGIESTKADYPPFEVVHAYNVASVLGKGHKFIDKEALLKWQPE-YIFIDEGGLKLILED 265
+ N+ + +G K + E ++ PE IF G+K ED
Sbjct: 230 YWTAGKGTFIDSLISIAGGENIFHDV-EGWKQVSPEEIVARDPEVIIFSAHAGIK--PED 286
Query: 266 YKKNPDFYESLKAVKEGKVY 285
K P A K G+ Y
Sbjct: 287 LCKTP--LAETTAFKNGRAY 304
>pir||G70046 iron-binding protein homolog yvrC - Bacillus subtilis
>gi|2635815|emb|CAB15308.1| (Z99120) similar to
iron-binding protein [Bacillus subtilis]
>gi|2635831|emb|CAB15323.1| (Z99121) similar to
iron-binding protein [Bacillus subtilis]
>gi|2832811|emb|CAA11735.1| (AJ223978) putative metal
binding protein, YvrC [Bacillus subtilis]
Length = 314
Score = 76.9 bits (186), Expect = 4e-13
Identities = 81/330 (24%), Positives = 151/330 (45%), Gaps = 42/330 (12%)
Query: 6 ALILVAFILGCIGENPSSSKG-----------VTIKDMLGRSVEVPKEVHRIVAVGPGCL 54
AL+L A +L G NP+ K VTI D + V + KE +IV++ P
Sbjct: 10 ALLLAAVMLAGCG-NPADQKDSKAKQKTEVFPVTIDDASNQDVTIKKEPKKIVSLMPSNT 68
Query: 55 RIIVYLNASDMVVGVEDFEKRYSFGRPYIIAHP-ELKELPSIGPGGPGKLPNLEAIMELK 113
I L D VVGV + +P E+K++ +G N+E ++ LK
Sbjct: 69 EITYALGLGDKVVGVTTND-----------TYPKEVKKVEKVGDMN----VNVEKVISLK 113
Query: 114 PDVIFATYID-ERTANDIQEKTGIPVVVLSYGELSNFTDEELFNSLKLAGKILGKEERAE 172
PD++ A +A+ I++ + VL+ + +F+ E++ S+++ G+ G E++A+
Sbjct: 114 PDLVLAHESSMSASADAIKQLKDAGITVLTVNDAQSFS--EVYKSIEMIGEAGGAEKKAD 171
Query: 173 EVISFIKSVEEDLRKRTEGV---KEKKVYVGGIGYKGAHGIESTKADYPPFEVVHAYNVA 229
+++ +KS +D++++ + + +EK V++ + V+HA N A
Sbjct: 172 QLVKSMKSDLKDIQEKAKTISKDEEKSVFIEVSPDPDIYTTGKDTFMNEMLNVIHAKNAA 231
Query: 230 SVLGKGHKFIDKEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYESLKAVKEGKVYGLLP 289
+ G + EA++K P+ I +G +E D + + AVK +VY + P
Sbjct: 232 AD-QTGWVQMTDEAIVKLNPDAIVTTDGVKAKAVE----KRDGWSEINAVKHHRVYDVDP 286
Query: 290 YNFYATNIGTAMADAY-FIGKVLYPDRFKD 318
T G + + + + +YPD FK+
Sbjct: 287 --DLVTRSGPRLIEGVEELAESIYPDTFKE 314
>pir||S62196 hypothetical protein 2 - Methanosarcina barkeri
>gi|1124959|emb|CAA63627.1| (X93084) orf2
[Methanosarcina barkeri] >gi|1587235|prf||2206350C ORF 2
[Methanosarcina barkeri]
Length = 319
Score = 74.9 bits (181), Expect = 1e-12
Identities = 81/319 (25%), Positives = 128/319 (39%), Gaps = 55/319 (17%)
Query: 4 ILALILVAFILGCIGENPS-----------SSKGVTIKDMLGRSVEVPKEVHRIVAVGPG 52
+L L+ V + GC+ +S V I DMLGR + VP E+ +
Sbjct: 11 LLLLLPVVMLCGCVENTDQQAVLNSSTELQNSSTVQITDMLGRQLTVPAEISSTIGTSSP 70
Query: 53 CLRIIVYLNASDMVVGVEDFEKRYSFGRPYIIAHPELKELPSIGPGGPGKLPNLEAIMEL 112
I+VY+ A D + G + + +F +P++ LP IG K N E ++++
Sbjct: 71 S-AILVYMLAPDKLAG---WNSKQNFTQPFM--DENYSNLPVIGNWLGSKTGNYETVIDM 124
Query: 113 KPDVIFATYIDERTANDI----QEKTG-IPVVVLSYGELSNFTDEELFNSLKLAGKILGK 167
PD+ + N+ QE G IPVV ++ L + +++ GK+L
Sbjct: 125 HPDIFIESTATNGKTNEAIERRQENLGSIPVVAINDSILFVTQSDP---TIEYVGKLLNC 181
Query: 168 EERAEEVISFIKSVEEDLRKRTEGVKEK---KVYVGGIGYKGAHGIESTKADYPPFEVVH 224
E +A+++I F S+ ++ + + E +VY G KG S ++
Sbjct: 182 ESQAKKLIEFRSSILNEINSTVKDIPEDQKVRVYYAE-GPKGLMTDPSGSQHSQVIDICG 240
Query: 225 AYNVAS---VLGKGHKFIDKEALLKWQPEYIFIDEGGLKLILEDYKKNPDFYE------- 274
NVA G G + E ++ W PE I NP FY
Sbjct: 241 GINVADCPLTSGSGMTQVSIEQVMNWNPEVII-------------TSNPQFYSTVYSDSL 287
Query: 275 --SLKAVKEGKVYGLLPYN 291
S+ AVK KVY L P N
Sbjct: 288 WASMDAVKNKKVY-LAPQN 305
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.142 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146278508
Number of Sequences: 2977
Number of extensions: 6787699
Number of successful extensions: 16583
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 16560
Number of HSP's gapped (non-prelim): 13
length of query: 366
length of database: 189,106,746
effective HSP length: 55
effective length of query: 311
effective length of database: 156,189,961
effective search space: 48575077871
effective search space used: 48575077871
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)