BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0679 (PAB0679) DE:Hypothetical protein
         (118 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75077 hypothetical protein PAB0679 - Pyrococcus abyssi (st...   241  2e-63
pir||B71067 hypothetical protein PH1232 - Pyrococcus horikoshii ...   173  6e-43

>pir||E75077 hypothetical protein PAB0679 - Pyrococcus abyssi (strain Orsay)
           >gi|5458434|emb|CAB49922.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 118
           
 Score =  241 bits (609), Expect = 2e-63
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MEVIVQDYHTMNTSRISPFSAPMFFSSIMPILSPGIANSTFLCSLSMLTIPATFFPFLTL 60
           MEVIVQDYHTMNTSRISPFSAPMFFSSIMPILSPGIANSTFLCSLSMLTIPATFFPFLTL
Sbjct: 1   MEVIVQDYHTMNTSRISPFSAPMFFSSIMPILSPGIANSTFLCSLSMLTIPATFFPFLTL 60

Query: 61  YPTLTMPSRTSHIITVLNPTIKIFSTLTLPTGFPVIFSSSSFFFLLKNPSNLPPPYKQ 118
           YPTLTMPSRTSHIITVLNPTIKIFSTLTLPTGFPVIFSSSSFFFLLKNPSNLPPPYKQ
Sbjct: 61  YPTLTMPSRTSHIITVLNPTIKIFSTLTLPTGFPVIFSSSSFFFLLKNPSNLPPPYKQ 118


>pir||B71067 hypothetical protein PH1232 - Pyrococcus horikoshii
           >gi|3257649|dbj|BAA30332.1| (AP000005) 149aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 149
           
 Score =  173 bits (434), Expect = 6e-43
 Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 1/118 (0%)

Query: 1   MEVIVQDYHTMNTSRISPFSAPMFFSSIMPILSPGIANSTFLCSLSMLTIPATFFPFLTL 60
           MEV++QDYHT  TS++S FSA +FFSSI+P LSPGIANS FLCSLS+LTIPATFFPFLTL
Sbjct: 1   MEVVIQDYHTRYTSKMSSFSAFIFFSSIIPTLSPGIANSIFLCSLSILTIPATFFPFLTL 60

Query: 61  YPTLTMPSRTSHIITVLNPTIKIFSTLTLPTGFPVIFSSSSFFFLLKNPSNLPPPYKQ 118
           YPTLT+PSRTSHI+T LNPT+ I STLTLPTGFPV  S SS  FLLKN + LPPP  Q
Sbjct: 61  YPTLTIPSRTSHIMTSLNPTLSILSTLTLPTGFPVT-SFSSSPFLLKNLNILPPPKYQ 117


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.138    0.414 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46491670
Number of Sequences: 2977
Number of extensions: 1742165
Number of successful extensions: 5623
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5620
Number of HSP's gapped (non-prelim): 2
length of query: 118
length of database: 189,106,746
effective HSP length: 51
effective length of query: 67
effective length of database: 158,583,909
effective search space: 10625121903
effective search space used: 10625121903
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 160 (66.7 bits)