BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0685 (PAB0685) DE:Hypothetical protein
         (136 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75079 hypothetical protein PAB0685 - Pyrococcus abyssi (st...   282  2e-75
pir||D71066 hypothetical protein PH1226 - Pyrococcus horikoshii ...   242  2e-63

>pir||E75079 hypothetical protein PAB0685 - Pyrococcus abyssi (strain Orsay)
           >gi|5458450|emb|CAB49938.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 136
           
 Score =  282 bits (713), Expect = 2e-75
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MRCLKVAFGMENDEELIDAHYGDSNFFAIYEICEDGSYRLLEKRENKAKDFEEEDEGHGD 60
           MRCLKVAFGMENDEELIDAHYGDSNFFAIYEICEDGSYRLLEKRENKAKDFEEEDEGHGD
Sbjct: 1   MRCLKVAFGMENDEELIDAHYGDSNFFAIYEICEDGSYRLLEKRENKAKDFEEEDEGHGD 60

Query: 61  PRKFKAVVSQLLDVDVLAAFRMGPNFLRIRDKTNKVAFFTRTRDLNKAIQRVIENFEDLW 120
           PRKFKAVVSQLLDVDVLAAFRMGPNFLRIRDKTNKVAFFTRTRDLNKAIQRVIENFEDLW
Sbjct: 61  PRKFKAVVSQLLDVDVLAAFRMGPNFLRIRDKTNKVAFFTRTRDLNKAIQRVIENFEDLW 120

Query: 121 KQVQEKKREKPPLEGE 136
           KQVQEKKREKPPLEGE
Sbjct: 121 KQVQEKKREKPPLEGE 136


>pir||D71066 hypothetical protein PH1226 - Pyrococcus horikoshii
           >gi|3257643|dbj|BAA30326.1| (AP000005) 137aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 137
           
 Score =  242 bits (610), Expect = 2e-63
 Identities = 115/131 (87%), Positives = 122/131 (92%)

Query: 1   MRCLKVAFGMENDEELIDAHYGDSNFFAIYEICEDGSYRLLEKRENKAKDFEEEDEGHGD 60
           MRCLKVAFGME+DE LIDAHYGDS FFAIYEICEDGS +LLEKR NKAKD EEEDEGHGD
Sbjct: 1   MRCLKVAFGMEDDEHLIDAHYGDSEFFAIYEICEDGSVKLLEKRNNKAKDLEEEDEGHGD 60

Query: 61  PRKFKAVVSQLLDVDVLAAFRMGPNFLRIRDKTNKVAFFTRTRDLNKAIQRVIENFEDLW 120
           PRKF+AVV QLLDVDVLAAFRMGPNFLRIRDKTNKVAFFTRTRDLN AIQR+IENF+DLW
Sbjct: 61  PRKFRAVVGQLLDVDVLAAFRMGPNFLRIRDKTNKVAFFTRTRDLNVAIQRIIENFDDLW 120

Query: 121 KQVQEKKREKP 131
            QVQEKK++ P
Sbjct: 121 NQVQEKKKKIP 131


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53413374
Number of Sequences: 2977
Number of extensions: 2096077
Number of successful extensions: 11186
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11184
Number of HSP's gapped (non-prelim): 2
length of query: 136
length of database: 189,106,746
effective HSP length: 53
effective length of query: 83
effective length of database: 157,386,935
effective search space: 13063115605
effective search space used: 13063115605
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)