BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0686 (PAB0686) DE:Hypothetical protein
         (112 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75079 hypothetical protein PAB0686 - Pyrococcus abyssi (st...   238  2e-62
pir||C71066 hypothetical protein PH1225 - Pyrococcus horikoshii ...   107  5e-23

>pir||F75079 hypothetical protein PAB0686 - Pyrococcus abyssi (strain Orsay)
           >gi|5458451|emb|CAB49939.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 112
           
 Score =  238 bits (600), Expect = 2e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MNFLGIVPKVARISIPYAILSLILNYLFNINLSFPYGILLTFPGILAWIYCYLQVSKAYK 60
           MNFLGIVPKVARISIPYAILSLILNYLFNINLSFPYGILLTFPGILAWIYCYLQVSKAYK
Sbjct: 1   MNFLGIVPKVARISIPYAILSLILNYLFNINLSFPYGILLTFPGILAWIYCYLQVSKAYK 60

Query: 61  RGILMKEGCYSIVRHPIYSIWGCFMDSDKRNFFVLLFSIIFKYFYGIFMLVW 112
           RGILMKEGCYSIVRHPIYSIWGCFMDSDKRNFFVLLFSIIFKYFYGIFMLVW
Sbjct: 61  RGILMKEGCYSIVRHPIYSIWGCFMDSDKRNFFVLLFSIIFKYFYGIFMLVW 112


>pir||C71066 hypothetical protein PH1225 - Pyrococcus horikoshii
           >gi|3257642|dbj|BAA30325.1| (AP000005) 173aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 173
           
 Score =  107 bits (265), Expect = 5e-23
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 1   MNFLGIVPKVARISIPYAILSLILNYLFNINLSFP-YGILLTFPGILAWIYCYLQVSKAY 59
           +NFLGIVPKVA++S  Y   S +L  LF  + SFP  G +L F GI+ W  CY QVSKAY
Sbjct: 19  LNFLGIVPKVAKVSFLYIAFSALLERLFTFDFSFPRIGGILVFVGIVLWAICYFQVSKAY 78

Query: 60  KRGILMKEGCYSIVRHPIYSIWG 82
           K G L+K GCYS+VRHPIY+IWG
Sbjct: 79  KAGKLLKSGCYSVVRHPIYTIWG 101


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.337    0.153    0.510 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42508845
Number of Sequences: 2977
Number of extensions: 1632940
Number of successful extensions: 5575
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5572
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 189,106,746
effective HSP length: 41
effective length of query: 71
effective length of database: 164,568,779
effective search space: 11684383309
effective search space used: 11684383309
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 160 (66.7 bits)