BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0687 (PAB0687) DE:Hypothetical protein
(386 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75079 hypothetical protein PAB0687 - Pyrococcus abyssi (st... 773 0.0
pir||B71066 hypothetical protein PH1224 - Pyrococcus horikoshii ... 691 0.0
emb|CAC12144.1| (AL445066) conserved hypothetical protein [Therm... 129 7e-29
pir||T35587 hypothetical protein SC6G4.36c SC6G4.36c - Streptomy... 103 4e-21
pir||H70859 hypothetical protein Rv3037c - Mycobacterium tubercu... 69 6e-11
>pir||G75079 hypothetical protein PAB0687 - Pyrococcus abyssi (strain Orsay)
>gi|5458452|emb|CAB49940.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 386
Score = 773 bits (1975), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MISEENVKLAEELIRKGYNEKKIRSLLKLPDEEFKLALEVARARIKAKDKFSRSDLWFDL 60
MISEENVKLAEELIRKGYNEKKIRSLLKLPDEEFKLALEVARARIKAKDKFSRSDLWFDL
Sbjct: 1 MISEENVKLAEELIRKGYNEKKIRSLLKLPDEEFKLALEVARARIKAKDKFSRSDLWFDL 60
Query: 61 EGLRYATHEVVADYRGRRLKGQGVKSIADVSCGVGIQLIFFAKHGIRSVGIDIDPIKIEF 120
EGLRYATHEVVADYRGRRLKGQGVKSIADVSCGVGIQLIFFAKHGIRSVGIDIDPIKIEF
Sbjct: 61 EGLRYATHEVVADYRGRRLKGQGVKSIADVSCGVGIQLIFFAKHGIRSVGIDIDPIKIEF 120
Query: 121 AKRNAEKYGVEVEWVVGDALSPEIIEKVDAEVIFSDPARPPEVPERNLEDLLPSPLKIYE 180
AKRNAEKYGVEVEWVVGDALSPEIIEKVDAEVIFSDPARPPEVPERNLEDLLPSPLKIYE
Sbjct: 121 AKRNAEKYGVEVEWVVGDALSPEIIEKVDAEVIFSDPARPPEVPERNLEDLLPSPLKIYE 180
Query: 181 AYKHKTDSFIFDLPPQIRREKVPWKGEFEYIDLFGHVNRLTFYTEPLAKAERSAVILPQG 240
AYKHKTDSFIFDLPPQIRREKVPWKGEFEYIDLFGHVNRLTFYTEPLAKAERSAVILPQG
Sbjct: 181 AYKHKTDSFIFDLPPQIRREKVPWKGEFEYIDLFGHVNRLTFYTEPLAKAERSAVILPQG 240
Query: 241 ARLESNPDLENIVEETMEPERYIYEIPQSIDYADLINELFHKVNGELKLLLREKRRILAT 300
ARLESNPDLENIVEETMEPERYIYEIPQSIDYADLINELFHKVNGELKLLLREKRRILAT
Sbjct: 241 ARLESNPDLENIVEETMEPERYIYEIPQSIDYADLINELFHKVNGELKLLLREKRRILAT 300
Query: 301 SNDEVKSEYFKRSYIVVKVMPFHPVRINDFLRREGYGRATLRMSVDEKEYWRIRKKIESG 360
SNDEVKSEYFKRSYIVVKVMPFHPVRINDFLRREGYGRATLRMSVDEKEYWRIRKKIESG
Sbjct: 301 SNDEVKSEYFKRSYIVVKVMPFHPVRINDFLRREGYGRATLRMSVDEKEYWRIRKKIESG 360
Query: 361 LSGDKRAFVFKVRDLAVIAEEIPQAQ 386
LSGDKRAFVFKVRDLAVIAEEIPQAQ
Sbjct: 361 LSGDKRAFVFKVRDLAVIAEEIPQAQ 386
>pir||B71066 hypothetical protein PH1224 - Pyrococcus horikoshii
>gi|3257641|dbj|BAA30324.1| (AP000005) 386aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 386
Score = 691 bits (1765), Expect = 0.0
Identities = 331/385 (85%), Positives = 372/385 (95%)
Query: 1 MISEENVKLAEELIRKGYNEKKIRSLLKLPDEEFKLALEVARARIKAKDKFSRSDLWFDL 60
MISEE+VKLAEELIRKGY+EKKIRSLLKLP+ +FKLALEVARARIKAKDKFSR+DLWF+L
Sbjct: 1 MISEESVKLAEELIRKGYSEKKIRSLLKLPENDFKLALEVARARIKAKDKFSRNDLWFNL 60
Query: 61 EGLRYATHEVVADYRGRRLKGQGVKSIADVSCGVGIQLIFFAKHGIRSVGIDIDPIKIEF 120
EGLRYATHE VADYRG+RLK QG+KSIADVSCGVGIQLIFFAKHGIRSVG+DIDPIKIEF
Sbjct: 61 EGLRYATHEAVADYRGKRLKEQGIKSIADVSCGVGIQLIFFAKHGIRSVGVDIDPIKIEF 120
Query: 121 AKRNAEKYGVEVEWVVGDALSPEIIEKVDAEVIFSDPARPPEVPERNLEDLLPSPLKIYE 180
A+RNAEKYGV+VE++VGD+LSPE++EK+DA+VIFSDPARPPEVPERNLEDLLPSPLK+YE
Sbjct: 121 ARRNAEKYGVKVEFMVGDSLSPEVVEKIDADVIFSDPARPPEVPERNLEDLLPSPLKVYE 180
Query: 181 AYKHKTDSFIFDLPPQIRREKVPWKGEFEYIDLFGHVNRLTFYTEPLAKAERSAVILPQG 240
AYK + D+FIFDLPPQIRREKVPW+GEFEYIDLFGH+NRLTFYTEPLAKAERSAVILPQG
Sbjct: 181 AYKKRVDAFIFDLPPQIRREKVPWEGEFEYIDLFGHLNRLTFYTEPLAKAERSAVILPQG 240
Query: 241 ARLESNPDLENIVEETMEPERYIYEIPQSIDYADLINELFHKVNGELKLLLREKRRILAT 300
RLES+PDLENIVEET EP RY+YEIPQ+IDYA+LINELFHKV G+LKLLLREKRRILAT
Sbjct: 241 VRLESDPDLENIVEETKEPRRYLYEIPQAIDYANLINELFHKVKGDLKLLLREKRRILAT 300
Query: 301 SNDEVKSEYFKRSYIVVKVMPFHPVRINDFLRREGYGRATLRMSVDEKEYWRIRKKIESG 360
SNDEV+S+YFKRSYIVVK MPFHPVRINDFLR+EGYGRATLR+++DEKEYWR+RKKIE+G
Sbjct: 301 SNDEVESDYFKRSYIVVKTMPFHPVRINDFLRKEGYGRATLRINIDEKEYWRVRKKIEAG 360
Query: 361 LSGDKRAFVFKVRDLAVIAEEIPQA 385
L G+KRAFVFKV +LA+IAEE+ +A
Sbjct: 361 LKGEKRAFVFKVGNLAIIAEELHRA 385
>emb|CAC12144.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 378
Score = 129 bits (320), Expect = 7e-29
Identities = 108/381 (28%), Positives = 189/381 (49%), Gaps = 34/381 (8%)
Query: 9 LAEELIRKGYNEKKIRSLLKLPDE----EFKLALEVARARIKAKDKFSR-SDLWFDLEGL 63
L++ RK N++ I L+KL D E E+AR+R++ + K+S + L+ D
Sbjct: 14 LSDRAYRKRVNDR-IDELVKLIDAGHLVEDSPIGELARSRVRIRKKYSMWNRLFMDRYSA 72
Query: 64 RYATHEVVADYRGRRLKGQGVKSIADVSCGVGIQLIFFAKHGIRS--VGIDIDPIKIEFA 121
+Y+T E++ YR R+ + D+ G G+Q I F G+RS +GI+ D I+ +
Sbjct: 73 QYSTPEIIGSYRSARIDDD----VLDIGSGAGMQCIMF---GLRSGCIGIEKDRIRYLSS 125
Query: 122 KRNAEKYGVEVEWVVGDALSPEIIEKVDAEVIFSDPARPPEVPERNLEDLLPSPLKIYEA 181
NAE YG + D I A +FSDP R + RN+ D++PSP I E
Sbjct: 126 LLNAEAYGSGASFKNEDFYLTGI---ASARAVFSDPLR---MNTRNVRDIVPSPYHIME- 178
Query: 182 YKHKTDSFIFDLPPQIRREKVPWKGEFEYIDLFGHVNRLTFYTEPLAKAERSAVILPQGA 241
K + +++IFDLPP + + + GE EYI + G ++R T YT A+++ SA I+P G
Sbjct: 179 -KIQAEAYIFDLPPHADLDTIEFSGEKEYISVGGELSRFTVYTGRYAESDFSAHIIPAGV 237
Query: 242 RLESNPDLENIVEETMEPERYIYEIPQSIDYADLINELFHKVNGELKLLLREKRRILATS 301
L+ + E + YIY + ++ A L+ + ++ ++ R++RR + S
Sbjct: 238 HLKGSRYTGGFAEPHIYD--YIYVVDPAVSKAGLLEDF-----SDMSMISRDERRTV-LS 289
Query: 302 NDEVKSEYFKRSYIVVKVMPFHPVRINDFLRREGYGRATLRMSVDEKEYWRIRKKIESGL 361
++ + + V + ++ + R + LR V +EY+ I +K+E
Sbjct: 290 CASLRKNFPGMVFSVHGTYDWPGLQAE--MARMRPKKVYLRYGVSSEEYYTITEKLEHD- 346
Query: 362 SGDKRAFVFKVRDLAVIAEEI 382
G+ A++F+ + +IA +I
Sbjct: 347 DGEGDAYIFRFSEKYIIANKI 367
>pir||T35587 hypothetical protein SC6G4.36c SC6G4.36c - Streptomyces coelicolor
>gi|3449270|emb|CAA20414.1| (AL031317) SC6G4.36c,
similar to hypothetical proteins e.g. M. tuberculosis
TR:O53284 (EMBL:AL021287) MTV012.52c (358 aa) , fasta
scores; opt: 545 z-score: 329.5 E(): 4.1e-11, 36.2%
identity in 354 aa overlap [Streptomyces coelicolor
A3(2)]
Length = 426
Score = 103 bits (254), Expect = 4e-21
Identities = 102/350 (29%), Positives = 151/350 (43%), Gaps = 18/350 (5%)
Query: 30 PDEEFKLALEVARARIKAKDKFSRSD---LWFDLEGLRYATHEVVADYRGRRLKGQGVKS 86
P E AL AR R +A KF D ++F G+ +T VA YR R GV S
Sbjct: 75 PAELVSAALGQARLRQRAVAKFGAEDAGRMFFTPNGVEQSTRASVAAYRAGRFAALGVAS 134
Query: 87 IADVSCGVGIQLIFFAKHGIRSVGIDIDPIKIEFAKRNAEKYGVEVEWVVGDALSPEI-I 145
+AD+ CG+G I A+ GIR + +D DP+ A+ NA+ G+ V +A E+
Sbjct: 135 VADLCCGIGGDAIALARAGIRVLAVDRDPVTAAAARANADALGLAGLIEVREADVTEVDT 194
Query: 146 EKVDAEVIFSDPARPPEVPERNLEDLLPSPLK-IYEAYKHKTDSFIFDLPPQIRREKVPW 204
E DA +F DPAR + PL A + + + + P I E VP
Sbjct: 195 EAYDA--VFVDPARRGGRGRIFDPEAYSPPLSWAVRAARTASRAAALKVAPGIPHEAVPE 252
Query: 205 KGEFEYIDLFGHVNR-LTFYTEPLAKAERSAVILPQGARLESNPDLENIVEETMEPERYI 263
E E+I G V + ++ A A +LP G R L + E P RY+
Sbjct: 253 DAEAEWISDGGDVKEAVLWFGAGAAPGAVRATLLP-GPRTLPGTGLPD--PEVRTPGRYL 309
Query: 264 YEIPQSIDYADLINELFHKVNGELKLLLREKRRILATSNDEVKSEYFKRSYIVVKVMPFH 323
YE ++ A L+ E+ +V G L I + DE+ + +Y + MPF+
Sbjct: 310 YEPDGAVIRAHLVAEVAAQVGGGLL-----DATIAYVTADELLPTPYATAYEITDRMPFN 364
Query: 324 PVRINDFLRREGYGRATLRMSVDEKEYWRIRKKIESGLSGDKRAFVFKVR 373
++ LR G G T++ E +R+K++ G A VF R
Sbjct: 365 VKKLKALLRERGVGTLTVKKRGSAVEPEELRRKVKP--QGPNSATVFLTR 412
>pir||H70859 hypothetical protein Rv3037c - Mycobacterium tuberculosis (strain
H37RV) >gi|2791635|emb|CAA16122.1| (AL021287)
hypothetical protein Rv3037c [Mycobacterium
tuberculosis]
Length = 358
Score = 69.5 bits (167), Expect = 6e-11
Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 16/198 (8%)
Query: 58 FDLEGLRYATHEVVADYRGRRLKGQGVKSIADVSCGVGIQLIFFAKHGIRSVGIDIDPIK 117
F E L+ AT VA +R RRL G+ V D +C +G +L + +R+VG DIDP++
Sbjct: 40 FTDEALQQATAAPVARHRARRLAGRVVH---DATCSIGTELAALRELAVRAVGSDIDPVR 96
Query: 118 IEFAKRNAEKYGVEVEWVVGDALSPEIIEKVDAEVIFSDPARPPEVPER-NLEDLLPSPL 176
+ A+ N G+E + D L P + V+ DPAR R +L D P
Sbjct: 97 LAMARHNLAALGMEADLCRADVLHPVTRD----AVVVIDPARRSNGRRRFHLADYQPGLG 152
Query: 177 KIYEAYKHKTDSFIFDLPPQIRREKV---PWKGEFEYIDLFGHVNRLTFYTEPLAKA--E 231
+ + Y+ + + P I E+V ++GE E I G V ++ LA +
Sbjct: 153 PLLDRYRGR--DVVVKCAPGIDFEEVGRLGFEGEIEVISYRGGVREACLWSAGLAGSGIR 210
Query: 232 RSAVILPQGARL-ESNPD 248
R A IL G ++ + PD
Sbjct: 211 RRASILDSGEQIGDDEPD 228
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141411721
Number of Sequences: 2977
Number of extensions: 6079888
Number of successful extensions: 17448
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17439
Number of HSP's gapped (non-prelim): 6
length of query: 386
length of database: 189,106,746
effective HSP length: 56
effective length of query: 330
effective length of database: 155,591,474
effective search space: 51345186420
effective search space used: 51345186420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)