BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0689 (PAB0689) DE:Hypothetical protein
(581 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75080 hypothetical protein PAB0689 - Pyrococcus abyssi (st... 1181 0.0
pir||H71065 hypothetical protein PH1222 - Pyrococcus horikoshii ... 656 0.0
dbj|BAB07410.1| (AP001519) unknown conserved protein in others [... 287 2e-76
emb|CAC11294.1| (AL445063) conserved hypothetical protein [Therm... 167 4e-40
>pir||A75080 hypothetical protein PAB0689 - Pyrococcus abyssi (strain Orsay)
>gi|5458454|emb|CAB49942.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 581
Score = 1181 bits (3023), Expect = 0.0
Identities = 581/581 (100%), Positives = 581/581 (100%)
Query: 1 MDLNMIMLLSNGSLFFVGEGRMNGLYFLDTRFISNLKLEIPAKLINSYASLSKAVFTYQG 60
MDLNMIMLLSNGSLFFVGEGRMNGLYFLDTRFISNLKLEIPAKLINSYASLSKAVFTYQG
Sbjct: 1 MDLNMIMLLSNGSLFFVGEGRMNGLYFLDTRFISNLKLEIPAKLINSYASLSKAVFTYQG 60
Query: 61 DNFMAVREVKLEDAYEEVLHLYGRGHVKVRYTFEVPMEDIFEVRGFGKVKLQRSVSLEGR 120
DNFMAVREVKLEDAYEEVLHLYGRGHVKVRYTFEVPMEDIFEVRGFGKVKLQRSVSLEGR
Sbjct: 61 DNFMAVREVKLEDAYEEVLHLYGRGHVKVRYTFEVPMEDIFEVRGFGKVKLQRSVSLEGR 120
Query: 121 KFRYRGRDGIIRELEVETNMEFLGNEVVKDVNLENFKEETLYLRLKPRTSLNVQFPRPPR 180
KFRYRGRDGIIRELEVETNMEFLGNEVVKDVNLENFKEETLYLRLKPRTSLNVQFPRPPR
Sbjct: 121 KFRYRGRDGIIRELEVETNMEFLGNEVVKDVNLENFKEETLYLRLKPRTSLNVQFPRPPR 180
Query: 181 LELRIKTNITWLDSLLKRALKEILSISVKTPDGLVPFAGLPYFAAPFGRDAIITSLFLLP 240
LELRIKTNITWLDSLLKRALKEILSISVKTPDGLVPFAGLPYFAAPFGRDAIITSLFLLP
Sbjct: 181 LELRIKTNITWLDSLLKRALKEILSISVKTPDGLVPFAGLPYFAAPFGRDAIITSLFLLP 240
Query: 241 WYPEFARGTLKFFSKFQGKVENPRNEEEPGKIPHEVRFGELSISQLLPFHPYYGSVDATP 300
WYPEFARGTLKFFSKFQGKVENPRNEEEPGKIPHEVRFGELSISQLLPFHPYYGSVDATP
Sbjct: 241 WYPEFARGTLKFFSKFQGKVENPRNEEEPGKIPHEVRFGELSISQLLPFHPYYGSVDATP 300
Query: 301 LYVILAGEYLKWTGDRELIEELRGILTRAVDWILAKLREGYITYTPGILKNKGWKDSAEG 360
LYVILAGEYLKWTGDRELIEELRGILTRAVDWILAKLREGYITYTPGILKNKGWKDSAEG
Sbjct: 301 LYVILAGEYLKWTGDRELIEELRGILTRAVDWILAKLREGYITYTPGILKNKGWKDSAEG 360
Query: 361 IPDEDGKPAKPPIALVEVQGYAYKALLYSAEMGLTSHDSKYLLKEARKLKKRFNRDFKVG 420
IPDEDGKPAKPPIALVEVQGYAYKALLYSAEMGLTSHDSKYLLKEARKLKKRFNRDFKVG
Sbjct: 361 IPDEDGKPAKPPIALVEVQGYAYKALLYSAEMGLTSHDSKYLLKEARKLKKRFNRDFKVG 420
Query: 421 KYYGLAIDGDGRVIKVVASNMGHLLFTGIVENGKGIEERLMEEDMLGRWGIRTLSSREKA 480
KYYGLAIDGDGRVIKVVASNMGHLLFTGIVENGKGIEERLMEEDMLGRWGIRTLSSREKA
Sbjct: 421 KYYGLAIDGDGRVIKVVASNMGHLLFTGIVENGKGIEERLMEEDMLGRWGIRTLSSREKA 480
Query: 481 YNPFSYHNGSIWPHDNAIISWGLEEPWEVTKRIFMACRVLKSLPEFYAGVDSKVPLVPSR 540
YNPFSYHNGSIWPHDNAIISWGLEEPWEVTKRIFMACRVLKSLPEFYAGVDSKVPLVPSR
Sbjct: 481 YNPFSYHNGSIWPHDNAIISWGLEEPWEVTKRIFMACRVLKSLPEFYAGVDSKVPLVPSR 540
Query: 541 SNYPQAWSSASLFGLMRTLMRNEEISIKLFNGSQSSKDLEA 581
SNYPQAWSSASLFGLMRTLMRNEEISIKLFNGSQSSKDLEA
Sbjct: 541 SNYPQAWSSASLFGLMRTLMRNEEISIKLFNGSQSSKDLEA 581
>pir||H71065 hypothetical protein PH1222 - Pyrococcus horikoshii
>gi|3257639|dbj|BAA30322.1| (AP000005) 606aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 606
Score = 656 bits (1674), Expect = 0.0
Identities = 335/581 (57%), Positives = 420/581 (71%), Gaps = 21/581 (3%)
Query: 6 IMLLSNGSLFFVGE--GRM----NGLYFLDTRFISNLKLEIPAKLI--NSYASLSKAVFT 57
+ +LSNG LF + G M +GLY DTRFI N + + K
Sbjct: 1 MQILSNGILFAISRENGDMTEEYDGLYAFDTRFIRNSSFHVDGIRFIGGNQEGFEKGFSI 60
Query: 58 YQGDNFMAVREVKLE-DAYEEVLHLYGRGH----VKVRYTFEVPMEDIFEVRGFGKVKLQ 112
+ G++ +RE K+ + Y E H+Y R + VKV Y FEV MEDIFEVR F V+++
Sbjct: 61 FLGNDIAIIRERKVYGETYREAFHIYNRRNRITKVKVIYRFEVSMEDIFEVRRFSGVRIE 120
Query: 113 RSVSLEGRKFRYRGRDGIIRELEVETNMEFLGNEVVKDVNLENFKEETLYLRLKPRTSLN 172
R + +RY+G D I R L +ETNM+ LGN++VK V LE F+ +LY+ KP S+
Sbjct: 121 RRIE----NYRYKGIDHINRRLSIETNMDNLGNKLVKTVILEPFESRSLYIEFKPEISIA 176
Query: 173 VQFPRPPRLELRIKTNITWLDSLLKRALKEILSISVKTPDGLVPFAGLPYFAAPFGRDAI 232
+ F L+ +KTN+TWL+++ KRALKE+ +++V+ G + FAGLPY+A+PFGRDAI
Sbjct: 177 LPFRPSKSLKNLVKTNLTWLNNIFKRALKELSALTVEIDYGKIAFAGLPYYASPFGRDAI 236
Query: 233 ITSLFLLPWYPEFARGTLKFFSKFQGKVENPRNEEEPGKIPHEVRFGELSISQLLPFHPY 292
IT+LFLLPWYPE+ARGTL FFSK QGK + NEEEPGKIPHEVR+GELS+S+ LPF+PY
Sbjct: 237 ITALFLLPWYPEYARGTLNFFSKLQGKEFDEGNEEEPGKIPHEVRYGELSLSRKLPFYPY 296
Query: 293 YGSVDATPLYVILAGEYLKWTGDRELIEELRGILTRAVDWILAKLREG--YITYTPGILK 350
YG+VDATPLYVILAGEYLKWT DR IE ++ LT AVDWIL KL EG Y+ YTPG+LK
Sbjct: 297 YGTVDATPLYVILAGEYLKWTEDRGFIERIKPALTMAVDWILRKLEEGEGYVRYTPGLLK 356
Query: 351 NKGWKDSAEGIPDEDGKPAKPPIALVEVQGYAYKALLYSAEMGLTSHDSKYLLKEARKLK 410
NKGWKDSA I EDG P +PPIALVEVQGYAYKALL +A + LT HD K L+KE RKLK
Sbjct: 357 NKGWKDSANAIMTEDGTPLEPPIALVEVQGYAYKALLDAAILNLTDHDPKDLMKEGRKLK 416
Query: 411 KRFNRDFKVGKYYGLAIDGDGRVIKVVASNMGHLLFTGIVENGKGIEERLMEEDMLGRWG 470
KRFN+DF G +Y LA+DG +V+ASN+GHLLFTGI ++ K I ERL EED+L RWG
Sbjct: 417 KRFNKDFWTGGFYALALDGKNNPSRVIASNVGHLLFTGIAKHEKKIIERLKEEDLLTRWG 476
Query: 471 IRTLSSREKAYNPFSYHNGSIWPHDNAIISWGLEEPWEVTKRIFMACRVLKSLPEFYAGV 530
IRTLSS+E++Y+PFSYHNGSIWPHDNAII+ G E +E+ KRIF+AC+ LK LPEFYAG+
Sbjct: 477 IRTLSSQERSYDPFSYHNGSIWPHDNAIIALGFSEAFELAKRIFLACKYLKGLPEFYAGL 536
Query: 531 DSKVPLVPSRSNYPQAWSSASLFGLMRTL--MRNEEISIKL 569
DS+ P+VP R+NYPQAWSSASLF L++ + M EEI +L
Sbjct: 537 DSEYPIVPFRANYPQAWSSASLFALLKAILNMTPEEIKPEL 577
>dbj|BAB07410.1| (AP001519) unknown conserved protein in others [Bacillus
halodurans]
Length = 702
Score = 287 bits (728), Expect = 2e-76
Identities = 206/613 (33%), Positives = 316/613 (50%), Gaps = 85/613 (13%)
Query: 24 GLYFLDTRFISNLKLEIPAK---LINSYAS--------LSKAVFTYQGDNFMAVREVKLE 72
GLY DTRF+S L L I + L+NS A L+ GD + V+LE
Sbjct: 30 GLYTKDTRFLSKLDLRINGEEPILLNSEAQNAYMASILLTNPHMEKDGDLILWRESVELE 89
Query: 73 -------DAYEEVLHLYGRGHVKVRYT----FEVPMEDIFEVRGF-----GKVKLQRSVS 116
D E + V +T F+ +D+F VRGF GK + +SV+
Sbjct: 90 RKRFIANDVVYEKIRAKNYFPKPVTFTVNLHFDCDFQDMFVVRGFQHGDVGK-RTGQSVT 148
Query: 117 LEGRKFRYRGRDGIIRELEVETNMEFLGNEVVKDVNLENFK-----EETLYLRLKPRTSL 171
+F Y G D I R + + + V D +F EE+ + L L
Sbjct: 149 DNEMRFHYEGADEIQRTTLISWDQTA---QTVSDAGYLDFTCTLGHEESQEIVLTIAPIL 205
Query: 172 NVQFPRPPRLEL-----------------RIKTNITWLDSLLKRALKEILSISVKTPDGL 214
N + P ++ ++KT+ L LL + + ++ + G
Sbjct: 206 NGEEPTILPFDVALEQVKESYRAWNEGVTKVKTDHPRLQRLLDQGITDLRVLLTDLGYGS 265
Query: 215 VPFAGLPYFAAPFGRDAIITSLFLLPWYPEFARGTLKFFSKFQGKVENPRNEEEPGKIPH 274
P AGLP+FA PFGRD++I +L +LP+ PE A+GT++ + +QG +P +EEPGKI H
Sbjct: 266 FPVAGLPWFAVPFGRDSLIAALQMLPFQPEVAKGTIRTMAAYQGTKRDPWRDEEPGKIMH 325
Query: 275 EVRFGELSISQLLPFHPYYGSVDATPLYVILAGEYLKWTGDRELIEELRGILTRAVDWIL 334
E+R GEL+ ++ +PF PYYG++DATPLY++L EY+KWTGD L+EEL + A+ WI
Sbjct: 326 ELRSGELANTKQVPFSPYYGTIDATPLYLMLIVEYVKWTGDTTLLEELDSSIEAALRWID 385
Query: 335 A---KLREGYITYTPGILK---NKGWKDSAEGIPDEDGKPAKPPIALVEVQGYAYKALLY 388
+ +G++ Y K N+GWKDS + I +G AK PIAL EVQGY Y+A
Sbjct: 386 KFGDRDGDGFVEYYQEAAKGIANQGWKDSGDSIVHRNGDYAKTPIALAEVQGYVYQAKTG 445
Query: 389 SAEM--GLTSHD-SKYLLKEARKLKKRFNRDF---KVGKYYGLAIDGDGRVIKVVASNMG 442
AE+ GL D ++ L +EA++L +RF + F VG +Y +A+D + + + + SN G
Sbjct: 446 LAELYEGLNRIDLARKLSEEAQQLSERFEQAFWMEDVG-FYAIALDQEKKQVGTITSNPG 504
Query: 443 HLLFTGIV--ENGKGIEERLMEEDMLGRWGIRTLSSREKAYNPFSYHNGSIWPHDNAIIS 500
HLLF+ ++ E K + ++L+ + +GIRT++ E YNP SYH+GS+WPHDN+II
Sbjct: 505 HLLFSNMLSKERAKQVSDQLVSNKLFSGYGIRTMAEGEAGYNPMSYHDGSVWPHDNSIIL 564
Query: 501 WGL------EEPWEVTKRIFMACRVLK--SLPEFYAGVDS-----KVPLVPSRSNYPQAW 547
G+ E+ V + + + LPE + G + K P+ S PQAW
Sbjct: 565 LGMGRLGHHEQANRVINGLIDSASSFEYDRLPELFCGYEKGERAVKYPVACS----PQAW 620
Query: 548 SSASLFGLMRTLM 560
++ + ++T++
Sbjct: 621 AAGTPLVFIQTIL 633
>emb|CAC11294.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 388
Score = 167 bits (418), Expect = 4e-40
Identities = 125/386 (32%), Positives = 205/386 (52%), Gaps = 53/386 (13%)
Query: 208 VKTPDGLVPFAGLPYFAAPFGRDAIITSLFLLPWYPEFARGTLKFFSKFQGKVENPRNEE 267
+++P G + +AGLP F A FGRD+II+S+ L+ +P+ A+ T+ + QG+ + E
Sbjct: 16 LRSPKGYL-YAGLPKFRALFGRDSIISSIQLIDLFPDIAQNTVIYLKDLQGRKLDYSIGE 74
Query: 268 EPGKIPHEVRFGE---LSISQLLPF---HPYYGSVDATPLYVILAGE-YLKWTGDRELIE 320
PGKI HE E L + +P+ Y SVD+TPL+++L +L+ D IE
Sbjct: 75 YPGKILHEYYDDEKIFLDRKRSIPWLNSRINYFSVDSTPLFILLIKNLFLRNLID---IE 131
Query: 321 ELRGILTRAVDWILA-KLREGYITYTPGIL----KNKGWKDSAEGIPDEDGKPAKPPIAL 375
+ + + A+ +++A +G ITY +L ++ W+D I D K P+A
Sbjct: 132 QFKDSIMMAMQFLIAYSSSDGLITYDKALLGAGLMSQSWRDGVGDIMDR----LKSPVAT 187
Query: 376 VEVQGYAYKALLYSAEMGLTSHDSKYLLKEARKLKKRFNRDFKVGK---------YYGLA 426
V VQGY Y+ SA+ L + + LK +++ ++ + YYGLA
Sbjct: 188 VGVQGYFYE----SADFVLNLFPDSLIEESLPDLKDFYSKMREILENKFWLEETGYYGLA 243
Query: 427 IDGDGRVIKVVASNMGHLLFTGIVENGK--GIEERLMEEDMLGRWGIRTLSSREKAYNPF 484
+DGDG + + S+ GHL+ +GI+ + + +RL E D+L +GIRTLS+++ ++P
Sbjct: 244 VDGDGVIEQAATSDPGHLIGSGILTRSRERDVIDRLFESDLLTDYGIRTLSAKDPRFDPK 303
Query: 485 SYHNGSIWPHDNAIISWG------LEEPWEVTKRIFMACRVLKSLPEFYAGVD------- 531
+Y GSIWP DN II+ G L+E E+ +R+ A +PE++ GVD
Sbjct: 304 AYQRGSIWPQDNWIIADGIKRRGYLKEYRELRERLIAAYEYYGRMPEYF-GVDRYGKIMD 362
Query: 532 -SKVPLVPSRSNYPQAWSSASLFGLM 556
SK+ + P YPQAWS+ ++ +
Sbjct: 363 LSKLRIKPC---YPQAWSTGAIINFV 385
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226087031
Number of Sequences: 2977
Number of extensions: 10104731
Number of successful extensions: 25624
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25608
Number of HSP's gapped (non-prelim): 5
length of query: 581
length of database: 189,106,746
effective HSP length: 55
effective length of query: 526
effective length of database: 156,189,961
effective search space: 82155919486
effective search space used: 82155919486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 168 (69.9 bits)