BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0690 (PAB0690) DE:Hypothetical protein
         (530 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75080 hypothetical protein PAB0690 - Pyrococcus abyssi (st...  1062  0.0

>pir||B75080 hypothetical protein PAB0690 - Pyrococcus abyssi (strain Orsay)
           >gi|5458455|emb|CAB49943.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 530
           
 Score = 1062 bits (2717), Expect = 0.0
 Identities = 530/530 (100%), Positives = 530/530 (100%)

Query: 1   MRRKQIIILITLAILLPIANATNWKIMYMINDATFMHPGQPLILGGSLYQAGVYEVNYVK 60
           MRRKQIIILITLAILLPIANATNWKIMYMINDATFMHPGQPLILGGSLYQAGVYEVNYVK
Sbjct: 1   MRRKQIIILITLAILLPIANATNWKIMYMINDATFMHPGQPLILGGSLYQAGVYEVNYVK 60

Query: 61  YSFYIIALNTSTGSLEFAKELIFNLNETRIWGRGIGAGQFGILRKSSNGDIIAVFLAKRI 120
           YSFYIIALNTSTGSLEFAKELIFNLNETRIWGRGIGAGQFGILRKSSNGDIIAVFLAKRI
Sbjct: 61  YSFYIIALNTSTGSLEFAKELIFNLNETRIWGRGIGAGQFGILRKSSNGDIIAVFLAKRI 120

Query: 121 KSSFSATIVAKLKESGEVEWAKYYLLPTTSKDKVTPRELMPVDVLVASDGIYLLGKSVDN 180
           KSSFSATIVAKLKESGEVEWAKYYLLPTTSKDKVTPRELMPVDVLVASDGIYLLGKSVDN
Sbjct: 121 KSSFSATIVAKLKESGEVEWAKYYLLPTTSKDKVTPRELMPVDVLVASDGIYLLGKSVDN 180

Query: 181 PKSVTVLIKISNDGDVIWARSYMNLDTGTIPTGIDLTSNGDIIMLVNTRKPLLLWLDKDG 240
           PKSVTVLIKISNDGDVIWARSYMNLDTGTIPTGIDLTSNGDIIMLVNTRKPLLLWLDKDG
Sbjct: 181 PKSVTVLIKISNDGDVIWARSYMNLDTGTIPTGIDLTSNGDIIMLVNTRKPLLLWLDKDG 240

Query: 241 NITKVVGFDFGMPAKAEKVYVAENRIYVIGHLRPELFEPFIVVLDEDGNLIWAKRYPNSG 300
           NITKVVGFDFGMPAKAEKVYVAENRIYVIGHLRPELFEPFIVVLDEDGNLIWAKRYPNSG
Sbjct: 241 NITKVVGFDFGMPAKAEKVYVAENRIYVIGHLRPELFEPFIVVLDEDGNLIWAKRYPNSG 300

Query: 301 YDFVSIASDVEYLYILGKSGSTLQEGKEGYERRVWVLSLDKEGNPRWNRVTGDSIVMNEL 360
           YDFVSIASDVEYLYILGKSGSTLQEGKEGYERRVWVLSLDKEGNPRWNRVTGDSIVMNEL
Sbjct: 301 YDFVSIASDVEYLYILGKSGSTLQEGKEGYERRVWVLSLDKEGNPRWNRVTGDSIVMNEL 360

Query: 361 GGMAVDEYIYVTYYRNALRGAGVVFMAIGKDGHVPCPSNSPTLIAEQLDVKIKDVKPPSV 420
           GGMAVDEYIYVTYYRNALRGAGVVFMAIGKDGHVPCPSNSPTLIAEQLDVKIKDVKPPSV
Sbjct: 361 GGMAVDEYIYVTYYRNALRGAGVVFMAIGKDGHVPCPSNSPTLIAEQLDVKIKDVKPPSV 420

Query: 421 SDIKVEVYQLDARSRELDISEAIPCENVKTTTTKQSTLSPTKSPTETKSKTTTSNEEIIK 480
           SDIKVEVYQLDARSRELDISEAIPCENVKTTTTKQSTLSPTKSPTETKSKTTTSNEEIIK
Sbjct: 421 SDIKVEVYQLDARSRELDISEAIPCENVKTTTTKQSTLSPTKSPTETKSKTTTSNEEIIK 480

Query: 481 ILTKTQTSKEYTKTTSQKSPSNTQSPKREGTCGPGIFILIPLVLLSKRKR 530
           ILTKTQTSKEYTKTTSQKSPSNTQSPKREGTCGPGIFILIPLVLLSKRKR
Sbjct: 481 ILTKTQTSKEYTKTTSQKSPSNTQSPKREGTCGPGIFILIPLVLLSKRKR 530


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202028265
Number of Sequences: 2977
Number of extensions: 9008904
Number of successful extensions: 37098
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37091
Number of HSP's gapped (non-prelim): 1
length of query: 530
length of database: 189,106,746
effective HSP length: 58
effective length of query: 472
effective length of database: 154,394,500
effective search space: 72874204000
effective search space used: 72874204000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)