BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0691 (PAB0691) DE:Hypothetical protein
         (135 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75080 hypothetical protein PAB0691 - Pyrococcus abyssi (st...   257  3e-68
pir||G71065 hypothetical protein PH1221 - Pyrococcus horikoshii ...   217  5e-56

>pir||C75080 hypothetical protein PAB0691 - Pyrococcus abyssi (strain Orsay)
           >gi|5458456|emb|CAB49944.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 135
           
 Score =  257 bits (650), Expect = 3e-68
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MREYIIVKVKEDGKLEIPLEYAYELGLIKGSYFLVEVDTDLKEAHIERVALPGKKLVEIE 60
           MREYIIVKVKEDGKLEIPLEYAYELGLIKGSYFLVEVDTDLKEAHIERVALPGKKLVEIE
Sbjct: 1   MREYIIVKVKEDGKLEIPLEYAYELGLIKGSYFLVEVDTDLKEAHIERVALPGKKLVEIE 60

Query: 61  MVVIDRPGVLAKISGVLGKHRVNILFNESEELESLGLAAIVAIVDVSDADISLKELEEII 120
           MVVIDRPGVLAKISGVLGKHRVNILFNESEELESLGLAAIVAIVDVSDADISLKELEEII
Sbjct: 61  MVVIDRPGVLAKISGVLGKHRVNILFNESEELESLGLAAIVAIVDVSDADISLKELEEII 120

Query: 121 KGIEEVKEVKIVEIA 135
           KGIEEVKEVKIVEIA
Sbjct: 121 KGIEEVKEVKIVEIA 135


>pir||G71065 hypothetical protein PH1221 - Pyrococcus horikoshii
           >gi|3257638|dbj|BAA30321.1| (AP000005) 138aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 138
           
 Score =  217 bits (546), Expect = 5e-56
 Identities = 102/134 (76%), Positives = 126/134 (93%)

Query: 1   MREYIIVKVKEDGKLEIPLEYAYELGLIKGSYFLVEVDTDLKEAHIERVALPGKKLVEIE 60
           MREYI+VKVKEDGKLE+PLEYAYE+GLIK +YFL+E+DTDLKE H+ER+ALPGK+LVE+E
Sbjct: 4   MREYILVKVKEDGKLEVPLEYAYEVGLIKDAYFLLEIDTDLKEIHVERIALPGKRLVEVE 63

Query: 61  MVVIDRPGVLAKISGVLGKHRVNILFNESEELESLGLAAIVAIVDVSDADISLKELEEII 120
           ++V+D+PGVLAKISG LG+H +NILFNESEELESLG+AAIVAIVD+S++D+S+KELE ++
Sbjct: 64  LIVVDKPGVLAKISGTLGRHGINILFNESEELESLGMAAIVAIVDISNSDVSVKELEGVL 123

Query: 121 KGIEEVKEVKIVEI 134
             IEEVKEVKI EI
Sbjct: 124 AKIEEVKEVKIREI 137


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.141    0.364 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46252028
Number of Sequences: 2977
Number of extensions: 1787025
Number of successful extensions: 4575
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4570
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 189,106,746
effective HSP length: 58
effective length of query: 77
effective length of database: 154,394,500
effective search space: 11888376500
effective search space used: 11888376500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 160 (66.7 bits)