BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0696 (PAB0696) DE:Hypothetical protein
(266 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75081 hypothetical protein PAB0696 - Pyrococcus abyssi (st... 533 e-150
pir||G75081 hypothetical protein PAB0697 - Pyrococcus abyssi (st... 205 6e-52
sp|Q58707|YD11_METJA HYPOTHETICAL PROTEIN MJ1311 >gi|2128782|pir... 87 2e-16
gb|AAB99634.1| (U67601) conserved hypothetical protein [Methanoc... 85 6e-16
pir||E64501 hypothetical protein MJ1614 - Methanococcus jannaschii 85 1e-15
>pir||F75081 hypothetical protein PAB0696 - Pyrococcus abyssi (strain Orsay)
>gi|5458467|emb|CAB49955.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 266
Score = 533 bits (1357), Expect = e-150
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MRLMKVGINSAIIKEISGRGLSLDELPVEVVEIGFDDIPLLTEKGINWNLIEELLTLGVE 60
MRLMKVGINSAIIKEISGRGLSLDELPVEVVEIGFDDIPLLTEKGINWNLIEELLTLGVE
Sbjct: 1 MRLMKVGINSAIIKEISGRGLSLDELPVEVVEIGFDDIPLLTEKGINWNLIEELLTLGVE 60
Query: 61 FTIHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRKSYYTSFVN 120
FTIHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRKSYYTSFVN
Sbjct: 61 FTIHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRKSYYTSFVN 120
Query: 121 TKRQLMELSVIGEEYGVKLEIENLLDNRIGAFPHEFLPFLDENVSTCFDVGHAFLVSRKY 180
TKRQLMELSVIGEEYGVKLEIENLLDNRIGAFPHEFLPFLDENVSTCFDVGHAFLVSRKY
Sbjct: 121 TKRQLMELSVIGEEYGVKLEIENLLDNRIGAFPHEFLPFLDENVSTCFDVGHAFLVSRKY 180
Query: 181 GIRLEEFLLIPDIEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIEPKNVILEIRRY 240
GIRLEEFLLIPDIEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIEPKNVILEIRRY
Sbjct: 181 GIRLEEFLLIPDIEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIEPKNVILEIRRY 240
Query: 241 RDSENVIRSIELVKKLKPRVKREVLI 266
RDSENVIRSIELVKKLKPRVKREVLI
Sbjct: 241 RDSENVIRSIELVKKLKPRVKREVLI 266
>pir||G75081 hypothetical protein PAB0697 - Pyrococcus abyssi (strain Orsay)
>gi|5458468|emb|CAB49956.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 251
Score = 205 bits (515), Expect = 6e-52
Identities = 98/255 (38%), Positives = 165/255 (64%), Gaps = 8/255 (3%)
Query: 4 MKVGINSAIIKEISGRGLSLDELPVEVVEIGFDDIPLLTEKG-INWNLIEELLTLGVEFT 62
+K+GI+S+ I E SG G+ LD++ V+V+E+ ++ ++ +G I +L+E L + E
Sbjct: 3 VKIGISSSAITEFSGAGVPLDDIKVDVIELDLREVGIIGREGEIRKSLLESLPEVNAEII 62
Query: 63 IHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRKSYYTSFVNTK 122
+HAP ++LGV SR NI IM F+++ L++ YV++HGG I+ SY+ SFVN K
Sbjct: 63 LHAPNQ------VNLGVYSRANILIMRSTFKVASYLDSNYVIVHGGKIKISYHKSFVNLK 116
Query: 123 RQLMELSVIGEEYGVKLEIENLLDNRIGAFPHEFLPFLDENVSTCFDVGHAFLVSRKYGI 182
QL EL + +Y V + +EN + + FPHEFLPFL+ ++ CFD+GHAFL SR YG+
Sbjct: 117 AQLEELVKLSRDYSVNILLENFISGLL-IFPHEFLPFLELGINQCFDIGHAFLSSRFYGL 175
Query: 183 RLEEFLLIPDIEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIEPKNVILEIRRYRD 242
++EFL + ++E + +HDN G D+H G G+I + I+ + ++ P+ +LE++++ +
Sbjct: 176 PMKEFLKVGNVELLEIHDNMGIGDDHLPPGNGIIGESYIMKVLREVSPRMAVLEVKKFSN 235
Query: 243 SENVIRSIELVKKLK 257
E VIR + L++ ++
Sbjct: 236 EEEVIRGLNLLEGVR 250
>sp|Q58707|YD11_METJA HYPOTHETICAL PROTEIN MJ1311 >gi|2128782|pir||F64463 hypothetical
protein MJ1311 - Methanococcus jannaschii
>gi|1591950|gb|AAB99318.1| (U67571) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 293
Score = 87.0 bits (212), Expect = 2e-16
Identities = 80/276 (28%), Positives = 137/276 (48%), Gaps = 22/276 (7%)
Query: 4 MKVGINSAII--KEISGRGLSLDELPVEVVEIGFDDIPLLTEKGINWNLIEELLTLGVEF 61
MK G++S + + ++ + E + EI + L+ K I + L+E VE
Sbjct: 17 MKFGVSSLVFLPESLTSSMEKIAEHNFDAWEIVCEGTHYLSPKNIKY-LMELRDRYEVEI 75
Query: 62 TIHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRK--SYYTSFV 119
+HAP SD S++ V + + + D + L+++ VV+H G I + S Y S +
Sbjct: 76 VVHAPFSDLNPASMNERV-RKLTVECIRDAIEGAFELDSEVVVVHPGYIPELWSNYVSEI 134
Query: 120 --NTKRQLMELSVIGEEYGVKLEIENLLDNR--IGAFPHEFLPFLDE----NVSTCFDVG 171
N L E+ I E+YG+K+ +EN+ + R +G P L + + N+ FD+G
Sbjct: 135 LDNNFSTLSEIVEIAEDYGIKIGLENMPNFRGVLGITPESLLEIVKDIDSKNLGITFDIG 194
Query: 172 HAFLVSR--KYGIRLEEFLLIPDIEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIE 229
HA ++ +L+ + I HVH HDN+G+ DEH +GEG I F +L + +I
Sbjct: 195 HANTAGNPAEFVEKLQNIGI--GIIHVHAHDNNGYDDEHLKIGEGNINFIEVLEKLKEIG 252
Query: 230 PKNVI-LEIRRYRDSENVIRSIELVKKLKPRVKREV 264
VI +E + RD+ ++S E++K+ V +V
Sbjct: 253 YDGVISIENKNIRDA---VKSKEILKEYLEIVNEKV 285
>gb|AAB99634.1| (U67601) conserved hypothetical protein [Methanococcus jannaschii]
Length = 251
Score = 85.4 bits (208), Expect = 6e-16
Identities = 71/240 (29%), Positives = 123/240 (50%), Gaps = 20/240 (8%)
Query: 4 MKVGINSAIIKEISGR---GLSLDELPVEVVEIGFDDIPLLTEKGINWNLIEELLTLGVE 60
MK+G+++++ + L + E V+ VE+G D + G IE + ++
Sbjct: 1 MKLGVSTSLFLDTDKNLSDALEILEERVKYVELGCDGNLNVMSDGN----IELAQSYDLK 56
Query: 61 FTIHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRKSY-YTSFV 119
+T+H P +D N+S + ++ + DV ++ ++AK +V+H G Y Y +
Sbjct: 57 YTLHCPITD-LNLSSYRERIRKVSLDFVRDVLEVAIKVDAKLIVLHPGYCVFKYDYEKAL 115
Query: 120 NTK-RQLMELSVIGEEYGVKLEIENLLDNRIGAFPH---EFLPFLDENVSTCFDVGHAFL 175
N+ + L +L+ I EE+GV++ IEN+ + F + E + L E + D+GH+FL
Sbjct: 116 NSLIKSLNDLNNIQEEFGVQITIENMPSYDMFMFRNPDKEIIENLGE-LKITLDIGHSFL 174
Query: 176 VSRKYGIRLEEFLLIPD-IEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIEPKNVI 234
+E FL I D I H+H+HDN+G +DEH +G+G I FN + KI +I
Sbjct: 175 NKN-----IENFLKISDKIAHIHIHDNNGEFDEHLCIGKGKINFNNFKKDLKKINAIKMI 229
>pir||E64501 hypothetical protein MJ1614 - Methanococcus jannaschii
Length = 251
Score = 84.7 bits (206), Expect = 1e-15
Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 20/240 (8%)
Query: 4 MKVGINSAIIKEISGR---GLSLDELPVEVVEIGFDDIPLLTEKGINWNLIEELLTLGVE 60
MK+G+++++ + L + E V+ VE+G D + G IE + ++
Sbjct: 1 MKLGVSTSLFLDTDKNLSDALEILEERVKYVELGCDGNLNVMSDGN----IELAQSYDLK 56
Query: 61 FTIHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRKSY-YTSFV 119
+T+H P +D N+S + ++ DV ++ ++AK +V+H G Y Y +
Sbjct: 57 YTLHCPITD-LNLSSYRERIRKVSLDFXRDVLEVAIKVDAKLIVLHPGYCVFKYDYEKAL 115
Query: 120 NTK-RQLMELSVIGEEYGVKLEIENLLDNRIGAFPH---EFLPFLDENVSTCFDVGHAFL 175
N+ + L +L+ I EE+GV++ IEN+ + F + E + L E + D+GH+FL
Sbjct: 116 NSLIKSLNDLNNIQEEFGVQITIENMPSYDMFMFRNPDKEIIENLGE-LKITLDIGHSFL 174
Query: 176 VSRKYGIRLEEFLLIPD-IEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIEPKNVI 234
+E FL I D I H+H+HDN+G +DEH +G+G I FN + KI +I
Sbjct: 175 NKN-----IENFLKISDKIAHIHIHDNNGEFDEHLCIGKGKINFNNFKKDLKKINAIKMI 229
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.144 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95276722
Number of Sequences: 2977
Number of extensions: 4039090
Number of successful extensions: 8505
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8498
Number of HSP's gapped (non-prelim): 5
length of query: 266
length of database: 189,106,746
effective HSP length: 53
effective length of query: 213
effective length of database: 157,386,935
effective search space: 33523417155
effective search space used: 33523417155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)