BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0697 (PAB0697) DE:Hypothetical protein
         (251 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75081 hypothetical protein PAB0697 - Pyrococcus abyssi (st...   495  e-139
pir||F75081 hypothetical protein PAB0696 - Pyrococcus abyssi (st...   205  6e-52

>pir||G75081 hypothetical protein PAB0697 - Pyrococcus abyssi (strain Orsay)
           >gi|5458468|emb|CAB49956.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 251
           
 Score =  495 bits (1260), Expect = e-139
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MKVKIGISSSAITEFSGAGVPLDDIKVDVIELDLREVGIIGREGEIRKSLLESLPEVNAE 60
           MKVKIGISSSAITEFSGAGVPLDDIKVDVIELDLREVGIIGREGEIRKSLLESLPEVNAE
Sbjct: 1   MKVKIGISSSAITEFSGAGVPLDDIKVDVIELDLREVGIIGREGEIRKSLLESLPEVNAE 60

Query: 61  IILHAPNQVNLGVYSRANILIMRSTFKVASYLDSNYVIVHGGKIKISYHKSFVNLKAQLE 120
           IILHAPNQVNLGVYSRANILIMRSTFKVASYLDSNYVIVHGGKIKISYHKSFVNLKAQLE
Sbjct: 61  IILHAPNQVNLGVYSRANILIMRSTFKVASYLDSNYVIVHGGKIKISYHKSFVNLKAQLE 120

Query: 121 ELVKLSRDYSVNILLENFISGLLIFPHEFLPFLELGINQCFDIGHAFLSSRFYGLPMKEF 180
           ELVKLSRDYSVNILLENFISGLLIFPHEFLPFLELGINQCFDIGHAFLSSRFYGLPMKEF
Sbjct: 121 ELVKLSRDYSVNILLENFISGLLIFPHEFLPFLELGINQCFDIGHAFLSSRFYGLPMKEF 180

Query: 181 LKVGNVELLEIHDNMGIGDDHLPPGNGIIGESYIMKVLREVSPRMAVLEVKKFSNEEEVI 240
           LKVGNVELLEIHDNMGIGDDHLPPGNGIIGESYIMKVLREVSPRMAVLEVKKFSNEEEVI
Sbjct: 181 LKVGNVELLEIHDNMGIGDDHLPPGNGIIGESYIMKVLREVSPRMAVLEVKKFSNEEEVI 240

Query: 241 RGLNLLEGVRR 251
           RGLNLLEGVRR
Sbjct: 241 RGLNLLEGVRR 251


>pir||F75081 hypothetical protein PAB0696 - Pyrococcus abyssi (strain Orsay)
           >gi|5458467|emb|CAB49955.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 266
           
 Score =  205 bits (515), Expect = 6e-52
 Identities = 98/255 (38%), Positives = 165/255 (64%), Gaps = 8/255 (3%)

Query: 3   VKIGISSSAITEFSGAGVPLDDIKVDVIELDLREVGIIGREGEIRKSLLESLPEVNAEII 62
           +K+GI+S+ I E SG G+ LD++ V+V+E+   ++ ++  +G I  +L+E L  +  E  
Sbjct: 4   MKVGINSAIIKEISGRGLSLDELPVEVVEIGFDDIPLLTEKG-INWNLIEELLTLGVEFT 62

Query: 63  LHAPNQ------VNLGVYSRANILIMRSTFKVASYLDSNYVIVHGGKIKISYHKSFVNLK 116
           +HAP        ++LGV SR NI IM   F+++  L++ YV++HGG I+ SY+ SFVN K
Sbjct: 63  IHAPCSDGKNISLDLGVDSRRNIRIMEDVFRISQALNAKYVVIHGGDIRKSYYTSFVNTK 122

Query: 117 AQLEELVKLSRDYSVNILLENFISGLL-IFPHEFLPFLELGINQCFDIGHAFLSSRFYGL 175
            QL EL  +  +Y V + +EN +   +  FPHEFLPFL+  ++ CFD+GHAFL SR YG+
Sbjct: 123 RQLMELSVIGEEYGVKLEIENLLDNRIGAFPHEFLPFLDENVSTCFDVGHAFLVSRKYGI 182

Query: 176 PMKEFLKVGNVELLEIHDNMGIGDDHLPPGNGIIGESYIMKVLREVSPRMAVLEVKKFSN 235
            ++EFL + ++E + +HDN G  D+H   G G+I  + I+  + ++ P+  +LE++++ +
Sbjct: 183 RLEEFLLIPDIEHVHLHDNSGFWDEHRALGEGVIPFNVILPAIAKIEPKNVILEIRRYRD 242

Query: 236 EEEVIRGLNLLEGVR 250
            E VIR + L++ ++
Sbjct: 243 SENVIRSIELVKKLK 257


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.143    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89744921
Number of Sequences: 2977
Number of extensions: 3728769
Number of successful extensions: 8533
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8529
Number of HSP's gapped (non-prelim): 2
length of query: 251
length of database: 189,106,746
effective HSP length: 55
effective length of query: 196
effective length of database: 156,189,961
effective search space: 30613232356
effective search space used: 30613232356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)