BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0701 (PAB0701) DE:Hypothetical protein
         (183 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75082 hypothetical protein PAB0701 - Pyrococcus abyssi (st...   371  e-102

>pir||C75082 hypothetical protein PAB0701 - Pyrococcus abyssi (strain Orsay)
           >gi|5458472|emb|CAB49960.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 183
           
 Score =  371 bits (943), Expect = e-102
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MRNRLMGKLKFEIEKLGRITIDAIKNIKDEERVEDLLWEAIDTRWELNDTAIEILIRFQP 60
           MRNRLMGKLKFEIEKLGRITIDAIKNIKDEERVEDLLWEAIDTRWELNDTAIEILIRFQP
Sbjct: 1   MRNRLMGKLKFEIEKLGRITIDAIKNIKDEERVEDLLWEAIDTRWELNDTAIEILIRFQP 60

Query: 61  MARELRLVRACMDASYDLYRIVRHSEKLSKLPIDNYTTKLLSSLLPWLKMGISCLTGDSD 120
           MARELRLVRACMDASYDLYRIVRHSEKLSKLPIDNYTTKLLSSLLPWLKMGISCLTGDSD
Sbjct: 61  MARELRLVRACMDASYDLYRIVRHSEKLSKLPIDNYTTKLLSSLLPWLKMGISCLTGDSD 120

Query: 121 LDLTDFPLYEDAFNEGLKMVDKAISVHLDSMFNHMKHVLASALYYIRRKESSRENAYNVP 180
           LDLTDFPLYEDAFNEGLKMVDKAISVHLDSMFNHMKHVLASALYYIRRKESSRENAYNVP
Sbjct: 121 LDLTDFPLYEDAFNEGLKMVDKAISVHLDSMFNHMKHVLASALYYIRRKESSRENAYNVP 180

Query: 181 HVR 183
           HVR
Sbjct: 181 HVR 183


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.138    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64317116
Number of Sequences: 2977
Number of extensions: 2440918
Number of successful extensions: 6223
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6222
Number of HSP's gapped (non-prelim): 1
length of query: 183
length of database: 189,106,746
effective HSP length: 54
effective length of query: 129
effective length of database: 156,788,448
effective search space: 20225709792
effective search space used: 20225709792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)