BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0702 (phoU) DE:phosphate ABC transporter, regulatory protein
(phoU)
         (198 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75082 phosphate abc transporter, regulatory protein (phou)...   383  e-105
pir||F72757 hypothetical protein APE0051 - Aeropyrum pernix (str...    75  5e-13

>pir||D75082 phosphate abc transporter, regulatory protein (phou) PAB0702 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458473|emb|CAB49961.1| (AJ248286) phosphate ABC
           transporter, regulatory protein (phoU) [Pyrococcus
           abyssi]
           Length = 198
           
 Score =  383 bits (972), Expect = e-105
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MRKLLDIGINQIRKLLAEMGKEALIALDYAKESLTGKENNAEEISAKLKILRSEVFEIAT 60
           MRKLLDIGINQIRKLLAEMGKEALIALDYAKESLTGKENNAEEISAKLKILRSEVFEIAT
Sbjct: 1   MRKLLDIGINQIRKLLAEMGKEALIALDYAKESLTGKENNAEEISAKLKILRSEVFEIAT 60

Query: 61  ELLVRYSPVASDLRFIQGALDTSYDLYRISRYAMEIGRTARIVGGCYTERIKKAFELSME 120
           ELLVRYSPVASDLRFIQGALDTSYDLYRISRYAMEIGRTARIVGGCYTERIKKAFELSME
Sbjct: 61  ELLVRYSPVASDLRFIQGALDTSYDLYRISRYAMEIGRTARIVGGCYTERIKKAFELSME 120

Query: 121 AVKISTEAFSTLNEVLVGRVLEIDEAVDKLYISSLEDLKKGYSNPAEALILRHLERICDH 180
           AVKISTEAFSTLNEVLVGRVLEIDEAVDKLYISSLEDLKKGYSNPAEALILRHLERICDH
Sbjct: 121 AVKISTEAFSTLNEVLVGRVLEIDEAVDKLYISSLEDLKKGYSNPAEALILRHLERICDH 180

Query: 181 AKEIGVKVLYVKEGKRGY 198
           AKEIGVKVLYVKEGKRGY
Sbjct: 181 AKEIGVKVLYVKEGKRGY 198


>pir||F72757 hypothetical protein APE0051 - Aeropyrum pernix (strain K1)
           >gi|5103439|dbj|BAA78960.1| (AP000058) 201aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 201
           
 Score = 75.3 bits (182), Expect = 5e-13
 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 9/140 (6%)

Query: 51  LRSEVFEIATELLVRYSPVASDLRFIQGALDTSYDLYRISRYAMEIGRTARIV--GGCY- 107
           L + V E AT  + +Y P+  +L   +  + TSYDLYRI+RY  EI R       GG   
Sbjct: 54  LSAVVEEQATFFIAKYQPLGPELLEAKSLIRTSYDLYRIARYCREINRVIAYTSRGGRTL 113

Query: 108 --TERIKKAFELSMEAVKISTEAFSTLNEVLVGRVLEIDEAVDKLYISSLEDLKK----G 161
             +++++KA E+    V  + +A+ + +  L  +V E D  +DK+Y + LE + K     
Sbjct: 114 KPSQQVRKAAEIVASMVGDAYKAYRSRDNELRRKVEETDNMIDKIYDAMLERIGKVESLS 173

Query: 162 YSNPAEALILRHLERICDHA 181
            +   + LI+RHLERI DHA
Sbjct: 174 QTEAVDLLIVRHLERIADHA 193


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.363 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59984960
Number of Sequences: 2977
Number of extensions: 2098237
Number of successful extensions: 6961
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6958
Number of HSP's gapped (non-prelim): 2
length of query: 198
length of database: 189,106,746
effective HSP length: 60
effective length of query: 138
effective length of database: 153,197,526
effective search space: 21141258588
effective search space used: 21141258588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)