BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0705 (PAB0705) DE:Hypothetical protein
         (194 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75083 hypothetical protein PAB0705 - Pyrococcus abyssi (st...   369  e-101
pir||E71064 hypothetical protein PH1211 - Pyrococcus horikoshii ...   236  1e-61

>pir||E75083 hypothetical protein PAB0705 - Pyrococcus abyssi (strain Orsay)
           >gi|5458482|emb|CAB49970.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 194
           
 Score =  369 bits (938), Expect = e-101
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MELQLIIGYSLLLAFFFMKALISLAKLFISVPVRIFGGVDVDKRFLPSLIFNIVTIIVGA 60
           MELQLIIGYSLLLAFFFMKALISLAKLFISVPVRIFGGVDVDKRFLPSLIFNIVTIIVGA
Sbjct: 1   MELQLIIGYSLLLAFFFMKALISLAKLFISVPVRIFGGVDVDKRFLPSLIFNIVTIIVGA 60

Query: 61  LIFFFLFRKSLIGAFLLGLSFRSGANFGKFIAYSAHDIKLLKEGKGIFEAISLTLLLLEF 120
           LIFFFLFRKSLIGAFLLGLSFRSGANFGKFIAYSAHDIKLLKEGKGIFEAISLTLLLLEF
Sbjct: 61  LIFFFLFRKSLIGAFLLGLSFRSGANFGKFIAYSAHDIKLLKEGKGIFEAISLTLLLLEF 120

Query: 121 LFLLSLTLISQSVYATLKGISLPLLVWFSGLAFGLTFGLAVSKTSKGFLMKDSIALLLFL 180
           LFLLSLTLISQSVYATLKGISLPLLVWFSGLAFGLTFGLAVSKTSKGFLMKDSIALLLFL
Sbjct: 121 LFLLSLTLISQSVYATLKGISLPLLVWFSGLAFGLTFGLAVSKTSKGFLMKDSIALLLFL 180

Query: 181 GVKKVKKRPSLLRP 194
           GVKKVKKRPSLLRP
Sbjct: 181 GVKKVKKRPSLLRP 194


>pir||E71064 hypothetical protein PH1211 - Pyrococcus horikoshii
           >gi|3257628|dbj|BAA30311.1| (AP000005) 194aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 194
           
 Score =  236 bits (597), Expect = 1e-61
 Identities = 117/187 (62%), Positives = 142/187 (75%)

Query: 1   MELQLIIGYSLLLAFFFMKALISLAKLFISVPVRIFGGVDVDKRFLPSLIFNIVTIIVGA 60
           MELQL+IGY LLL FF MK +I + K  I VPV   GG ++DKR  PSL FN++TI VG 
Sbjct: 1   MELQLMIGYGLLLVFFLMKLIIGITKTLIRVPVEFVGGENLDKRTWPSLTFNLITIFVGL 60

Query: 61  LIFFFLFRKSLIGAFLLGLSFRSGANFGKFIAYSAHDIKLLKEGKGIFEAISLTLLLLEF 120
           L+F+ + RKS++ A LL  SFRSGANFG+F+ YS HD K+LKE KGIF  +SLTLLLLE 
Sbjct: 61  LVFYLMLRKSMVLALLLPFSFRSGANFGRFLVYSIHDAKILKEEKGIFGVVSLTLLLLEL 120

Query: 121 LFLLSLTLISQSVYATLKGISLPLLVWFSGLAFGLTFGLAVSKTSKGFLMKDSIALLLFL 180
            FLL+L +ISQS+Y  L G+SL LL+WFSGL FG  FGL V+ TS+G LM+DSIALL FL
Sbjct: 121 SFLLALIVISQSLYVALNGVSLSLLLWFSGLTFGCGFGLIVANTSRGLLMRDSIALLTFL 180

Query: 181 GVKKVKK 187
           G KK+KK
Sbjct: 181 GAKKIKK 187


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.334    0.151    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61131364
Number of Sequences: 2977
Number of extensions: 2334931
Number of successful extensions: 11398
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11396
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 189,106,746
effective HSP length: 51
effective length of query: 143
effective length of database: 158,583,909
effective search space: 22677498987
effective search space used: 22677498987
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 163 (67.9 bits)