BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0707 (PAB0707) DE:Hypothetical protein
(253 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75083 hypothetical protein PAB0707 - Pyrococcus abyssi (st... 517 e-146
pir||B71064 hypothetical protein PH1208 - Pyrococcus horikoshii ... 390 e-108
pir||A69129 conserved hypothetical protein MTH233 - Methanobacte... 191 6e-48
sp|Q58977|YF82_METJA PUTATIVE DEOXYRIBONUCLEASE MJ1582 >gi|21280... 161 1e-38
sp|P37545|YABD_BACSU PUTATIVE DEOXYRIBONUCLEASE YABD >gi|2127033... 135 6e-31
dbj|BAB03773.1| (AP001507) unknown conserved protein [Bacillus h... 126 3e-28
pir||G70476 conserved hypothetical protein aq_2060 - Aquifex aeo... 125 4e-28
emb|CAA69984.1| (Y08729) hypothetical protein [Acidianus ambival... 123 1e-27
gb|AAK40412.1| Conserved hypothetical protein [Sulfolobus solfat... 118 8e-26
pir||A72035 php homolog (urease/pyrimidinase) hydrolase - Chlamy... 110 2e-23
pir||H72349 conserved hypothetical protein - Thermotoga maritima... 106 2e-22
pir||E71674 hypothetical protein RP682 - Rickettsia prowazekii >... 104 8e-22
sp|P57436|Y355_BUCAI PUTATIVE DEOXYRIBONUCLEASE BU355 >gi|100390... 104 1e-21
sp|P73335|YH86_SYNY3 PUTATIVE DEOXYRIBONUCLEASE SLL1786 >gi|7448... 103 2e-21
pir||E82363 conserved hypothetical protein VC0103 [imported] - V... 102 3e-21
gb|AAD54294.1| (AF174390) HI0454 [Haemophilus influenzae] 101 9e-21
pir||B81653 mttC protein, probable TC0883 [imported] - Chlamydia... 101 9e-21
sp|P44718|YCFH_HAEIN PUTATIVE DEOXYRIBONUCLEASE HI0454 >gi|10744... 100 3e-20
sp|P37346|YCFH_ECOLI HYPOTHETICAL 29.8 KDA PROTEIN IN HOLB-PTSG ... 99 5e-20
pir||C75554 conserved hypothetical protein - Deinococcus radiodu... 98 8e-20
pir||A82837 conserved hypothetical protein XF0177 [imported] - X... 98 1e-19
pir||A72736 hypothetical protein APE0423 - Aeropyrum pernix (str... 96 5e-19
pir||A82088 conserved hypothetical protein VC2353 [imported] - V... 96 5e-19
sp|P39408|YJJV_ECOLI HYPOTHETICAL 28.9 KD PROTEIN IN OSMY-DEOC I... 95 9e-19
pir||D83200 conserved hypothetical protein PA3564 [imported] - P... 95 9e-19
sp|P47255|Y009_MYCGE PUTATIVE DEOXYRIBONUCLEASE MG009 >gi|136155... 93 3e-18
pir||C81413 hypothetical protein Cj0644 [imported] - Campylobact... 93 3e-18
pir||B70124 conserved hypothetical protein BB0194 - Lyme disease... 92 8e-18
pir||E82944 hypothetical UU017 [imported] - Ureaplasma urealytic... 91 1e-17
pir||G71494 probable php hydrolase - Chlamydia trachomatis (sero... 91 1e-17
pir||H81159 conserved hypothetical protein NMB0771 [imported] - ... 90 3e-17
pir||E64716 conserved hypothetical protein HP1573 - Helicobacter... 89 5e-17
gi|7662008 KIAA0218 gene product [Homo sapiens] >gi|2501546|sp|Q... 88 1e-16
pir||E81945 hypothetical protein NMA0982 [imported] - Neisseria ... 88 1e-16
gi|11434838 KIAA0218 gene product [Homo sapiens] 88 1e-16
pir||B71803 hypothetical protein jhp1481 - Helicobacter pylori (... 87 2e-16
pir||G82127 conserved hypothetical protein VC2014 [imported] - V... 87 2e-16
pir||S56602 yjjV protein - Escherichia coli >gi|537218|gb|AAA972... 87 3e-16
emb|CAB59647.1| (AL132674) hypothetical protein SCE87.02c [Strep... 84 1e-15
pir||C70603 hypothetical protein Rv1008 - Mycobacterium tubercul... 84 2e-15
pir||G83286 secretion protein MttC PA2866 [imported] - Pseudomon... 83 2e-15
pir||B83275 conserved hypothetical protein PA2959 [imported] - P... 82 5e-15
pir||A82622 type V secretory pathway protein XF1913 [imported] -... 81 1e-14
pir||T25456 hypothetical protein B0432.8 - Caenorhabditis elegan... 81 2e-14
sp|P78005|Y009_MYCPN PUTATIVE DEOXYRIBONUCLEASE MG009 HOMOLOG (D... 80 3e-14
pir||E64174 hypothetical protein HI1664 - Haemophilus influenzae... 79 6e-14
sp|P45305|YG64_HAEIN PUTATIVE DEOXYRIBONUCLEASE HI1664 79 6e-14
pir||T32529 hypothetical protein CD4.2 - Caenorhabditis elegans ... 79 6e-14
gb|AAC19243.1| (AF067848) MttC [Escherichia coli] 78 8e-14
gb|AAF01585.1|AC009895_6 (AC009895) unknown protein [Arabidopsis... 78 8e-14
emb|CAB60325.1| (AL110480) contains similarity to Pfam domain: P... 78 1e-13
pir||T26559 hypothetical protein Y24F12A.b - Caenorhabditis elegans 78 1e-13
sp|P27859|TATD_ECOLI SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN... 77 2e-13
pir||H81822 conserved hypothetical protein NMA1946 [imported] - ... 76 3e-13
gb|AAF33415.1| (AF233324) 82% identity to E. coli hypothetical p... 76 4e-13
pir||A71258 conserved hypothetical protein TP0979 - syphilis spi... 76 5e-13
pir||H81053 conserved hypothetical protein NMB1687 [imported] - ... 75 1e-12
dbj|BAA21418.1| (AB004537) HYPOTHETICAL 47.4KD PROTEIN IN SHP1-S... 71 1e-11
pir||T39700 hypothetical protein SPAC17A3.08 - fission yeast (S... 71 1e-11
gb|AAK41291.1| Conserved hypothetical protein [Sulfolobus solfat... 70 3e-11
>pir||H75083 hypothetical protein PAB0707 - Pyrococcus abyssi (strain Orsay)
>gi|5458485|emb|CAB49973.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 253
Score = 517 bits (1317), Expect = e-146
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG
Sbjct: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
Query: 61 YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLTL 120
YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLTL
Sbjct: 61 YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLTL 120
Query: 121 AEELKLPVVIHAREAEDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTGITF 180
AEELKLPVVIHAREAEDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTGITF
Sbjct: 121 AEELKLPVVIHAREAEDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTGITF 180
Query: 181 IPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVEAIT 240
IPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVEAIT
Sbjct: 181 IPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVEAIT 240
Query: 241 ERNAKVFFGLPLV 253
ERNAKVFFGLPLV
Sbjct: 241 ERNAKVFFGLPLV 253
>pir||B71064 hypothetical protein PH1208 - Pyrococcus horikoshii
>gi|3257625|dbj|BAA30308.1| (AP000005) 250aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 250
Score = 390 bits (992), Expect = e-108
Identities = 178/250 (71%), Positives = 212/250 (84%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
MIDAHAHLEFYK++ E+II +A+ ++ I+DSITEYRK HVWKSWE+LK YFGFL+PTLG
Sbjct: 1 MIDAHAHLEFYKRDYESIIGEAKEKLDGIIDSITEYRKAHVWKSWELLKGYFGFLYPTLG 60
Query: 61 YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLTL 120
YHPNEA+RGNWEKV++VEEFIL+HK EIY IGEIGLDYYHAKT ER NQ IF HFL +
Sbjct: 61 YHPNEAKRGNWEKVKRVEEFILEHKDEIYGIGEIGLDYYHAKTSKERENQRIIFEHFLNI 120
Query: 121 AEELKLPVVIHAREAEDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTGITF 180
A+EL+LPVVIHAR AE A I+Q FDV AYFHSYTGPV++A+EI ENGHF+GIVTGI F
Sbjct: 121 AQELRLPVVIHARMAEREAFNIIQKFDVNAYFHSYTGPVELAKEISENGHFIGIVTGIVF 180
Query: 181 IPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVEAIT 240
IPEVR VA +++E +L ETDSPYMSPYKG+KNKPWFV++V+ EL+KIKE+P EEVE I
Sbjct: 181 IPEVRKVAEKMDIEGLLAETDSPYMSPYKGIKNKPWFVKIVLEELSKIKEIPIEEVEEII 240
Query: 241 ERNAKVFFGL 250
+ N K FF +
Sbjct: 241 DGNIKKFFSI 250
>pir||A69129 conserved hypothetical protein MTH233 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621281|gb|AAB84739.1| (AE000810) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 256
Score = 191 bits (481), Expect = 6e-48
Identities = 98/253 (38%), Positives = 159/253 (62%), Gaps = 5/253 (1%)
Query: 1 MIDAHAHLEF--YKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPT 58
+ID H HL+F + + E +IE+ARS+++A++DS L P GF+ PT
Sbjct: 6 IIDVHCHLDFKDFNRNREEVIERARSKLRAVIDSGVGLGGNRRALELASLNP--GFICPT 63
Query: 59 LGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFL 118
+G+HP +A + + + +V I + I A+GE G+D++H + E RR QEE FR F+
Sbjct: 64 MGFHPVDASKARQDLIGEVVSQIESNIDLIVAVGETGMDFHHTRDEEGRRRQEETFRVFV 123
Query: 119 TLAEELKLPVVIHAREAEDVALRILQNFDV-KAYFHSYTGPVKVAREIVENGHFVGIVTG 177
LA E ++P+V+HAR+AE+ AL + + V + FH Y G ++ AR I++ G+++ I T
Sbjct: 124 ELAAEHEMPLVVHARDAEERALETVLEYRVPEVIFHCYGGSIETARRILDEGYYISISTL 183
Query: 178 ITFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVE 237
+ F ++ RA+ LE +L ETDSPY+SP++G +N+P FVE + +A+IK++ E+V+
Sbjct: 184 VAFSEHHMELVRAIPLEGMLTETDSPYLSPFRGKRNEPAFVEEAVRAIARIKDMDLEDVD 243
Query: 238 AITERNAKVFFGL 250
+IT NA+ FGL
Sbjct: 244 SITTANAERVFGL 256
>sp|Q58977|YF82_METJA PUTATIVE DEOXYRIBONUCLEASE MJ1582 >gi|2128064|pir||E64497
hypothetical protein homolog MJ1582 - Methanococcus
jannaschii >gi|1592198|gb|AAB99602.1| (U67598) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 249
Score = 161 bits (402), Expect = 1e-38
Identities = 101/249 (40%), Positives = 149/249 (59%), Gaps = 12/249 (4%)
Query: 2 IDAHAHLE--FYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTL 59
+DAH H+E + K + +IE+A+ IV S ++ E+ K Y +L TL
Sbjct: 7 VDAHCHIEDKAFNKNRDEVIERAKKEDVIIVTSGASLGG--CLRALELRKKYNIYL--TL 62
Query: 60 GYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLT 119
GYHP+ + + + + KV I +++ EI AIGEIG+D K E +R QEEIF+ FL+
Sbjct: 63 GYHPSRVKADD-KVIEKVYNLIKNNEYEILAIGEIGMDI---KDENYKR-QEEIFKKFLS 117
Query: 120 LAEELKLPVVIHAREAEDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTGIT 179
LAEEL P+V+HAR E I ++ V FH Y+G V++A+EI + GH + I T +
Sbjct: 118 LAEELNKPIVVHARGFERKIFDIAKD-KVDIMFHCYSGDVELAKEIGKEGHLISISTLVC 176
Query: 180 FIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVEAI 239
F + + +L+LE + ETDSPY+SP KG KN+P V++VI E+AKIKE+ EEV+ +
Sbjct: 177 FSEHHKKLVESLDLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDV 236
Query: 240 TERNAKVFF 248
+N FF
Sbjct: 237 IYKNTCKFF 245
>sp|P37545|YABD_BACSU PUTATIVE DEOXYRIBONUCLEASE YABD >gi|2127033|pir||S66068 conserved
hypothetical protein yabD - Bacillus subtilis
>gi|467428|dbj|BAA05274.1| (D26185) unknown [Bacillus
subtilis] >gi|2632306|emb|CAB11815.1| (Z99104) similar
to hypothetical proteins [Bacillus subtilis]
Length = 255
Score = 135 bits (336), Expect = 6e-31
Identities = 81/258 (31%), Positives = 157/258 (60%), Gaps = 17/258 (6%)
Query: 1 MIDAHAHL--EFYKKEAEAIIEKARS-RMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFP 57
+ D HAHL E Y + E +IE+A++ +++ IV + + + + ++ EM++ Y F++
Sbjct: 2 LFDTHAHLNAEQYDTDLEEVIERAKAEKVERIV--VVGFDRPTITRAMEMIEEY-DFIYA 58
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
+G+HP +A E + ++E L +++ AIGE+GLDY+ K+ + Q+E+FR+
Sbjct: 59 AIGWHPVDAIDMTEEDLAWIKE--LSAHEKVVAIGEMGLDYHWDKSPKDI--QKEVFRNQ 114
Query: 118 LTLAEELKLPVVIHAREAEDVALRILQNFDVKAY---FHSYTGPVKVAREIVENGHFVGI 174
+ LA+E+ LP++IH R+A + + IL+ +A H +TG +VARE ++ ++
Sbjct: 115 IALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSF 174
Query: 175 VTGITF--IPEVRDVARALELENILVETDSPYMSP--YKGVKNKPWFVEVVINELAKIKE 230
+TF + ++V + + + +L+ETD P+++P ++G +N+P +V+ V ++A++KE
Sbjct: 175 GGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNEPSYVKYVAEQIAELKE 234
Query: 231 VPREEVEAITERNAKVFF 248
+ EE+ +IT NAK F
Sbjct: 235 MTFEEIASITTENAKRLF 252
>dbj|BAB03773.1| (AP001507) unknown conserved protein [Bacillus halodurans]
Length = 236
Score = 126 bits (313), Expect = 3e-28
Identities = 72/206 (34%), Positives = 128/206 (61%), Gaps = 11/206 (5%)
Query: 52 FGFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQE 111
+ F++ +G+HP +A E + +EE + H K + A+GE+GLDY+ K+ + Q+
Sbjct: 33 YDFIYAAVGWHPVDAIDMKDEHLVWLEE-LAGHPK-VVALGEMGLDYHWDKSPKDV--QK 88
Query: 112 EIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFD---VKAYFHSYTGPVKVAREIVEN 168
E+FR + LA+++KLP+VIH R+A+ + +L+ D V H + G V++ARE +E
Sbjct: 89 EVFRKQIALAKKVKLPIVIHNRDADRDIVDVLREEDAGQVGGIMHCFGGSVEIARECMEM 148
Query: 169 GHFVGIVTGITFIPEVRD--VARALELENILVETDSPYMSP--YKGVKNKPWFVEVVINE 224
++ + +TF R VA+ + L+ +L+ETD PY++P Y+G +N+P +V++V +
Sbjct: 149 NFYISLGGPVTFKNAKRPKLVAKEVPLDRLLIETDCPYLAPHPYRGKRNEPAYVKLVAEQ 208
Query: 225 LAKIKEVPREEVEAITERNAKVFFGL 250
+A++KE+P EEV +T NA+ F +
Sbjct: 209 IAELKEIPYEEVAKVTTANARKLFDI 234
>pir||G70476 conserved hypothetical protein aq_2060 - Aquifex aeolicus
>gi|2984285|gb|AAC07810.1| (AE000770) hypothetical
protein [Aquifex aeolicus]
Length = 454
Score = 125 bits (312), Expect = 4e-28
Identities = 88/264 (33%), Positives = 143/264 (53%), Gaps = 27/264 (10%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYR------KFHVWKSWEMLKPYFGF 54
MID H HL+ KKE R +A D EY + + + E K Y
Sbjct: 1 MIDTHCHLDLLKKE---------DREEAFKDERLEYLINVGFDRKTIKNAIEFAKNY-DK 50
Query: 55 LFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIF 114
++ +G+HP+EA + + + +++ ++ K + AIGEIGLD+Y K +++ QEEIF
Sbjct: 51 VYIAIGFHPHEADKVTDKDLDWLKKLAEENPK-VRAIGEIGLDFY--KNYSDKKKQEEIF 107
Query: 115 RHFLTLAEELKLPVVIHAREAEDVALRILQN---FDVKAYFHSYTGPVKVAREIVENGHF 171
R + +A+EL LPVVIH R+AE+ +RIL+ ++V H +TG + ++ V+ G F
Sbjct: 108 RKQIQIAKELGLPVVIHMRDAEEETIRILREEGAYEVGGVMHCFTGSYETMKKAVDMGFF 167
Query: 172 VGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVINELAK 227
+ +T+ VR+VA+ IL+ETDSP+++ P +G NKP + LA+
Sbjct: 168 ISYSGILTYKNAESVREVAKRTPTSRILLETDSPFLAPEPVRGKPNKPTNIFYTAQVLAE 227
Query: 228 -IKEVPREEVEAITERNAKVFFGL 250
+ E+V+ +T +NAK+ F L
Sbjct: 228 LLPNTSLEDVDRMTTQNAKLAFNL 251
>emb|CAA69984.1| (Y08729) hypothetical protein [Acidianus ambivalens]
Length = 243
Score = 123 bits (307), Expect = 1e-27
Identities = 74/246 (30%), Positives = 133/246 (53%), Gaps = 14/246 (5%)
Query: 1 MIDAHAHL--EFYKKEAEAIIEKARSRM-KAIVDSITEYRKFHVWKSWEMLKPYFGFLFP 57
+ID HAHL + K + + I+ K ++ A VD ++ ++ E+ + Y ++P
Sbjct: 2 LIDIHAHLNSDELKDKIDEILSKCNIKIINAGVDLHSDL------ETLELARIYKDIVYP 55
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
+G+HP EK K + IL + AI E+GLDYY K E R+ + E+ F
Sbjct: 56 AIGFHPEYI-----EKAEKEVDKILPLIDKAMAISEVGLDYYWIKDEKLRKKEIEVLSTF 110
Query: 118 LTLAEELKLPVVIHAREAEDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTG 177
L + E+ + PV++H R L+++ ++ + H++ G +K+AR+I++ G ++
Sbjct: 111 LEIGEKRRKPVILHIRGGMSDFLQLISSYKLTFIIHAFEGSIKIARKILDLGGYLSFPPI 170
Query: 178 ITFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVE 237
I R +A+ + L+ + ETDSP++ P KG N+P V + ++EL+ IK + +EE+E
Sbjct: 171 IVRDNLRRQIAKEVPLDRLFTETDSPFLGPEKGKINEPCNVSITLSELSIIKGLGKEEIE 230
Query: 238 AITERN 243
E+N
Sbjct: 231 KQIEKN 236
>gb|AAK40412.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 247
Score = 118 bits (292), Expect = 8e-26
Identities = 73/246 (29%), Positives = 135/246 (54%), Gaps = 15/246 (6%)
Query: 1 MIDAHAHLEF--YKKEAEAIIEKARSRMKAIVDSITEYRK-FHVWKSWEMLKPYFGFLFP 57
++D+HAH++ + + E +I + + IV++ +++ H + E+ K Y + P
Sbjct: 2 LVDSHAHIDVKEFDMDREFVINECQI---LIVNAGVDFQSNLH---TLELAKKYKNII-P 54
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
+G+HP + +KV ++++ L+ + I E+GLDY+ K E R+ Q E+ F
Sbjct: 55 AIGFHPEFVK----DKVNEIDK-CLELTRYGKIISEVGLDYFWIKDEDLRKKQIEVLEKF 109
Query: 118 LTLAEELKLPVVIHAREAEDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTG 177
L +AE+ PV+IH R L I+ ++ ++ HS+ G VK+A +++E G + I
Sbjct: 110 LQIAEKENKPVIIHIRGGMKDFLEIINSYRIRFVIHSFEGSVKIANKVIEYGGLISIPPI 169
Query: 178 ITFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVE 237
I + VA+ + L+ IL ETDSP+M P K +NKP V++V+ +++ +K + E+E
Sbjct: 170 IVRDKVRQKVAKEIPLDFILTETDSPFMGPEKMSRNKPCNVKIVVKQISLLKRIEEIEIE 229
Query: 238 AITERN 243
+N
Sbjct: 230 EKIYKN 235
>pir||A72035 php homolog (urease/pyrimidinase) hydrolase - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4377097|gb|AAD18925.1| (AE001660) PHP superfamily
(urease/pyrimidinase) hydrolase [Chlamydophila
pneumoniae CWL029] >gi|7190000|gb|AAF38857.1| (AE002265)
mttC protein, putative [Chlamydophila pneumoniae AR39]
>gi|8979160|dbj|BAA98995.1| (AP002547) PHP superfamily
(urease/pyrimidinase) hydrolase [Chlamydophila
pneumoniae J138]
Length = 261
Score = 110 bits (272), Expect = 2e-23
Identities = 77/266 (28%), Positives = 141/266 (52%), Gaps = 29/266 (10%)
Query: 1 MIDAHAHL--EFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPY-FGFLFP 57
+ DAH HL + ++++ +++++A+ ++V ++T K E+ + + + FP
Sbjct: 3 LADAHVHLSDDAFEEDINSVLQRAQDSGVSLVVNVTTTEK-------ELNRSFAYAERFP 55
Query: 58 TL------GYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQE 111
+ G P + + E R H K++ AIGE+GLDY A TE Q+
Sbjct: 56 KIRFCHVGGTPPQDVDQDIEEDYRNFHAAA--HSKKLAAIGEVGLDYCFA-TEEGIARQK 112
Query: 112 EIFRHFLTLAEELKLPVVIHAREAEDVALRILQNF------DVKAYFHSYTGPVKVAREI 165
E+ + +L L+ E +LP+V+H R A + R+L + H +TG ++ A+E+
Sbjct: 113 EVLQRYLALSLECELPLVVHCRGAFNDFFRMLDQYYHNDPRSRPGMLHCFTGTLEEAQEL 172
Query: 166 VENGHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVV 221
+ G F+ I +TF ++RD+ L LE++L+ETD+P+++ PY+G KN+P V
Sbjct: 173 ISRGWFISISGIVTFKNAQDLRDLVVELPLEHLLIETDAPFLAPVPYRGKKNEPAHVLHT 232
Query: 222 INELAKIKEVPREEVEAITERNAKVF 247
IN +A +K + +E+ A+ +N F
Sbjct: 233 INAVANVKGMFPQELAALAYKNVLRF 258
>pir||H72349 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981188|gb|AAD35749.1|AE001739_12 (AE001739)
conserved hypothetical protein [Thermotoga maritima]
Length = 256
Score = 106 bits (263), Expect = 2e-22
Identities = 73/260 (28%), Positives = 140/260 (53%), Gaps = 21/260 (8%)
Query: 1 MIDAHAHLEFYK--KEAEAIIEKARSRMKAIVDSI---TEYRKFHVWKSWEMLKPYFGFL 55
M+D HAHL F++ + A+I V ++ E K KS ++ K +
Sbjct: 1 MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSK----KSLDLSKTS-DRI 55
Query: 56 FPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFR 115
F ++G HP++A+ + + +E+F D K + AIGE GLD++ + E Q+ +F
Sbjct: 56 FCSVGVHPHDAKEVPEDFIEHLEKFAKDEK--VVAIGETGLDFFRNISPAEV--QKRVFV 111
Query: 116 HFLTLAEELKLPVVIHAREAEDVALRILQNFDV---KAYFHSYTGPVKVAREIVENGHFV 172
+ LA +L LP+V+H R+A A IL+ + + H+++ + A++ ++ G +
Sbjct: 112 EQIELAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLL 171
Query: 173 GIVTGITFIPE--VRDVARALELENILVETDSPYM--SPYKGVKNKPWFVEVVINELAKI 228
GI +T+ +R+V + + LE I++ETD P++ P++G +N+P +++ V+ ++++
Sbjct: 172 GIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQV 231
Query: 229 KEVPREEVEAITERNAKVFF 248
VP +V+ T NA+ F
Sbjct: 232 LGVPEAKVDEATTENARRIF 251
>pir||E71674 hypothetical protein RP682 - Rickettsia prowazekii
>gi|3861219|emb|CAA15119.1| (AJ235272) unknown
[Rickettsia prowazekii]
Length = 293
Score = 104 bits (258), Expect = 8e-22
Identities = 59/202 (29%), Positives = 109/202 (53%), Gaps = 11/202 (5%)
Query: 55 LFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIF 114
+F ++G HP E + +E L + ++I IGE GLDYYH ++ Q + F
Sbjct: 85 VFASVGVHPCEVNDKK-RLITDLEIIELTNHQKIIGIGETGLDYYHQP--YNKKLQRDSF 141
Query: 115 RHFLTLAEELKLPVVIHAREAEDVALRIL----QNFDVKAYFHSYTGPVKVAREIVENGH 170
++ A LP+++H REA++ + IL N H + +A ++++ G
Sbjct: 142 IAHISAASATNLPIIVHTREADEDTIDILTSAMHNSKFSGLIHCFASSKNLAAKMLDIGL 201
Query: 171 FVGIVTGITF--IPEVRDVARALELENILVETDSPYMSP--YKGVKNKPWFVEVVINELA 226
++ + ITF ++++ + + L+ +L+ETDSPY++P +G +N+P FV V ++A
Sbjct: 202 YISVSGIITFKNATNLQEIVKYIPLDRLLIETDSPYLAPTPMRGKQNEPAFVRYVAEKVA 261
Query: 227 KIKEVPREEVEAITERNAKVFF 248
++K + +EVE +T N K+ F
Sbjct: 262 ELKNITSQEVENVTTHNFKILF 283
>sp|P57436|Y355_BUCAI PUTATIVE DEOXYRIBONUCLEASE BU355 >gi|10039025|dbj|BAB13059.1|
(AP001119) hypothetical protein [Buchnera sp. APS]
Length = 264
Score = 104 bits (257), Expect = 1e-21
Identities = 74/267 (27%), Positives = 139/267 (51%), Gaps = 22/267 (8%)
Query: 1 MIDAHAHLEFYK-----KEAEAIIEKA-RSRMKAIVDSITEYRKFHVWKSWEMLKPYFGF 54
+ID+H HL+ + E +++K+ ++ +K + T F+ K ++ K Y
Sbjct: 3 LIDSHCHLDRLNYNLPLENIEDVLKKSYQNHVKNFLTVSTCISNFYNIK--KLFKKY-NT 59
Query: 55 LFPTLGYHPNEARR--GNWEKVRKVEEFI--LDHKKEIYAIGEIGLDYYHAKTEVERRNQ 110
+F + G HP ++ + + + I L K++ A+GE GLDYY++ ++ Q
Sbjct: 60 IFYSCGVHPLNCKKELNLFHTIENLSNEIKKLSCIKDVIALGETGLDYYYSSDT--KKIQ 117
Query: 111 EEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDV---KAYFHSYTGPVKVAREIVE 167
++ FR + +A +LK P+++H+R A + ++ILQ + K HS+TG A ++++
Sbjct: 118 QDFFREHIRVAIKLKKPIIVHSRNASEDTIKILQEENAEKCKGVLHSFTGDYNTACKLLD 177
Query: 168 NGHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVIN 223
G ++ ITF E+ R + L +L+ETDSPY+S PY+G N+P ++ +
Sbjct: 178 LGFYISCSGIITFKNSLELCKTIRKIPLNRLLIETDSPYLSPAPYRGKGNQPAYLFYIAE 237
Query: 224 ELAKIKEVPREEVEAITERNAKVFFGL 250
L+ +KE+ + IT N + F +
Sbjct: 238 YLSILKEIDIHALGHITTSNFRTLFNI 264
>sp|P73335|YH86_SYNY3 PUTATIVE DEOXYRIBONUCLEASE SLL1786 >gi|7448423|pir||S77519
hypothetical protein sll1786 - Synechocystis sp. (strain
PCC 6803) >gi|1652444|dbj|BAA17366.1| (D90905)
hypothetical protein [Synechocystis sp.]
Length = 261
Score = 103 bits (254), Expect = 2e-21
Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 19/264 (7%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
++D H H+ F A+ + R R +V + K + + L F LF +G
Sbjct: 3 LVDTHVHINFDVFAADLDQLQHRWRQAGVVQLVHSCVKPQEFDQIQSLADRFPELFFAVG 62
Query: 61 YHPNEARRGNWEKVRKVEEFILDHKK---EIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
HP +A +W+ + IL + K + AIGE+GLD++ A R +Q E+FR
Sbjct: 63 LHPLDAE--DWQDNTAGQ--ILAYAKADDRVVAIGEMGLDFFKADN---RDHQIEVFRAQ 115
Query: 118 LTLAEELKLPVVIHAREAEDVALRILQNFD-----VKAYFHSYTGPVKVAREIVENGHFV 172
L +A EL PV+IH R+A ++L +F V H + G + + ++ G ++
Sbjct: 116 LAIARELNKPVIIHCRDAAQTMRQVLTDFQAESGPVAGVMHCWGGTPEETQWFLDLGFYI 175
Query: 173 GIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVINELAKI 228
+TF ++ A+ + + +LVETD P+++ P +G +N+P FV V +A +
Sbjct: 176 SFSGTVTFKKAEGIQASAQMVPPDRLLVETDCPFLAPVPQRGKRNEPAFVRHVAEAIAAL 235
Query: 229 KEVPREEVEAITERNAKVFFGLPL 252
+ VP E + T NA+ F LP+
Sbjct: 236 RHVPLETLAQQTTTNARNLFKLPV 259
>pir||E82363 conserved hypothetical protein VC0103 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654502|gb|AAF93281.1|
(AE004101) conserved hypothetical protein [Vibrio
cholerae]
Length = 255
Score = 102 bits (253), Expect = 3e-21
Identities = 80/259 (30%), Positives = 126/259 (47%), Gaps = 15/259 (5%)
Query: 1 MIDAHAHL---EFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFP 57
MID HAH+ EF E I + ++ I+ + + E K Y
Sbjct: 1 MIDTHAHVYASEFDHDRDEVIARARQVGIEKILMPNIDLNSIAPMLATE--KAYPDLCHS 58
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
+G HP + + + E+ H A+GEIG+D Y KT + QE F
Sbjct: 59 MMGLHPCYVDANVKQTLATIYEWFSRHT--FIAVGEIGIDLYWDKTF--KAEQEMAFLTQ 114
Query: 118 LTLAEELKLPVVIHAREAEDVALRIL---QNFDVKAYFHSYTGPVKVAREIVENGHFVGI 174
L A+EL LPVVIH R++ + L +L Q+ ++ FH + G V A+ I + G +GI
Sbjct: 115 LNWAKELDLPVVIHTRDSLNETLALLKQAQDGRLRGVFHCFGGSVDEAKAINDLGFHLGI 174
Query: 175 VTGITFIPEVRD-VARALELENILVETDSPYMSP--YKGVKNKPWFVEVVINELAKIKEV 231
TF D V L+L +++ETD PY++P ++G +N+P ++ ++A+++ +
Sbjct: 175 GGVSTFKNSGMDQVIPQLDLNYVILETDCPYLAPVPHRGKRNEPMLTHLISEKVAQLRSL 234
Query: 232 PREEVEAITERNAKVFFGL 250
P EV IT N+K FGL
Sbjct: 235 PLGEVIKITNNNSKALFGL 253
>gb|AAD54294.1| (AF174390) HI0454 [Haemophilus influenzae]
Length = 260
Score = 101 bits (249), Expect = 9e-21
Identities = 73/261 (27%), Positives = 133/261 (49%), Gaps = 21/261 (8%)
Query: 1 MIDAHAHL-----EFYKKEAEAIIEKARSR-MKAIVDSITEYRKFHVWKSWEMLKPYFGF 54
++D+H HL E K ++EKA +R +K ++ +F ++++ L+ F
Sbjct: 3 IVDSHCHLDALDYENLHKNISDVVEKAHARDVKHLLAIGVTLSRFE--QAYDSLRE-FNN 59
Query: 55 LFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIF 114
+ G HP + ++ R + L ++ AIGEIGLDYY++ + Q+ +F
Sbjct: 60 VSLACGVHPLDFEEEPYDAERLLR---LAQDPKVIAIGEIGLDYYYSADN--KAAQQAVF 114
Query: 115 RHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVAREIVENGHF 171
+ +A +L PV+IH R A D + +L+ + H +T ++ A++ ++ G +
Sbjct: 115 GSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHRAEKCGGVIHCFTETMEFAKKALDLGFY 174
Query: 172 VGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVINELAK 227
+ +TF +R+V R + +E +LVETDSPY++ PY+G +N+P + V +A
Sbjct: 175 ISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAT 234
Query: 228 IKEVPREEVEAITERNAKVFF 248
+K V E IT +N + F
Sbjct: 235 LKGVSAEAFAQITTQNFERLF 255
>pir||B81653 mttC protein, probable TC0883 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190912|gb|AAF39679.1| (AE002355) mttC
protein, putative [Chlamydia muridarum]
Length = 263
Score = 101 bits (249), Expect = 9e-21
Identities = 74/257 (28%), Positives = 134/257 (51%), Gaps = 18/257 (7%)
Query: 3 DAHAHL---EFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTL 59
DAH HL EF + E + + + +V+ T K + +S+ + Y +LF +
Sbjct: 5 DAHVHLSSEEFIEDFGEVCLRGKTAGVTRVVNVTTT--KAELLRSFAYAEQYPSWLFYHV 62
Query: 60 GYHPNEARRGNWEKVRKVEEFILDHKK-EIYAIGEIGLDYYHAKTEVERRNQEEIFRHFL 118
P + + + E+ +EF + ++ AIGE+GLDY A E E+ Q+E+ +L
Sbjct: 63 AGTPPQDAQEDIEE--DFQEFCRAAEGGKLAAIGEVGLDYLFAVQESEQERQKEVLHRYL 120
Query: 119 TLAEELKLPVVIHAREAEDVALRILQN---FDVKA---YFHSYTGPVKVAREIVENGHFV 172
LA + +LP+V+H R A + IL + D +A H +TG + A+E++ ++
Sbjct: 121 QLALQHELPLVVHCRGAFEDFFHILDHAYRADKRARPGMLHCFTGTYEEAKELLARDWYI 180
Query: 173 GIVTGITF--IPEVRDVARALELENILVETDSPYM--SPYKGVKNKPWFVEVVINELAKI 228
I +TF +RD+ + + LE +LVETD+PY+ +P +G +N+P + + ++A+I
Sbjct: 181 SISGIVTFKNAQGLRDLVKEIPLERLLVETDAPYLAPTPLRGKRNEPANIIYTLMQIAEI 240
Query: 229 KEVPREEVEAITERNAK 245
K +P E++ N +
Sbjct: 241 KGIPLNELQEAVSANVQ 257
>sp|P44718|YCFH_HAEIN PUTATIVE DEOXYRIBONUCLEASE HI0454 >gi|1074410|pir||I64152 probable
metal-dependent hydrolase (EC 3.-.-.-) HI0454 -
Haemophilus influenzae (strain Rd KW20)
>gi|1573428|gb|AAC22112.1| (U32728) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 260
Score = 99.8 bits (245), Expect = 3e-20
Identities = 72/261 (27%), Positives = 132/261 (49%), Gaps = 21/261 (8%)
Query: 1 MIDAHAHL-----EFYKKEAEAIIEKARSR-MKAIVDSITEYRKFHVWKSWEMLKPYFGF 54
++D+H HL E K ++EKA +R +K ++ +F ++++ L+ F
Sbjct: 3 IVDSHCHLDALDYENLHKNISDVVEKAHARDVKHLLAIGVTLSRFE--QAYDSLRE-FNN 59
Query: 55 LFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIF 114
+ G HP + ++ R + L ++ AIGEIGLDYY++ + Q+ +F
Sbjct: 60 VSLACGVHPLDFEEEPYDAERLLR---LAQDPKVIAIGEIGLDYYYSADN--KAAQQAVF 114
Query: 115 RHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVAREIVENGHF 171
+ +A +L PV+IH R A D + +L+ + H +T ++ ++ ++ G +
Sbjct: 115 GSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHRAEKCGGVIHCFTETMEFXKKALDLGFY 174
Query: 172 VGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVINELAK 227
+ +TF +R+V R + +E +LVETDSPY++ PY+G +N+P + V +A
Sbjct: 175 ISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAT 234
Query: 228 IKEVPREEVEAITERNAKVFF 248
+K V E IT +N + F
Sbjct: 235 LKGVSAEAFAQITTQNFERLF 255
>sp|P37346|YCFH_ECOLI HYPOTHETICAL 29.8 KDA PROTEIN IN HOLB-PTSG INTERGENIC REGION
>gi|7448422|pir||A64854 probable metal-dependent
hydrolase (EC 3.-.-.-) ycfH - Escherichia coli
>gi|1787342|gb|AAC74184.1| (AE000210) orf, hypothetical
protein [Escherichia coli K12]
>gi|4062666|dbj|BAA35907.1| (D90745) Hypothetical
protein in holB 3'region . [Escherichia coli]
Length = 265
Score = 99.1 bits (243), Expect = 5e-20
Identities = 77/265 (29%), Positives = 136/265 (51%), Gaps = 31/265 (11%)
Query: 1 MIDAHAHL-----EFYKKEAEAIIEKARSR----MKAIVDSITEYRKFHVWKSWEMLKPY 51
++D+H HL E K+ + ++ KA +R A+ ++ Y +++
Sbjct: 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPGYLHMR-----DLVGER 57
Query: 52 FGFLFPTLGYHP-NEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQ 110
+F + G HP N+ + E +R+ L ++ + A+GE GLDYY+ T + Q
Sbjct: 58 DNVVF-SCGVHPLNQNDPYDVEDLRR-----LAAEEGVVALGETGLDYYY--TPETKVRQ 109
Query: 111 EEIFRHFLTLAEELKLPVVIHAREAEDVALRILQN---FDVKAYFHSYTGPVKVAREIVE 167
+E F H + + EL PV++H R+A L IL+ D H +T + A ++++
Sbjct: 110 QESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLD 169
Query: 168 NGHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVIN 223
G ++ +TF ++RD AR + L+ +LVETDSPY++ P++G +N+P V V
Sbjct: 170 LGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAE 229
Query: 224 ELAKIKEVPREEVEAITERN-AKVF 247
+A +K V EE+ +T N A++F
Sbjct: 230 YMAVLKGVAVEELAQVTTDNFARLF 254
>pir||C75554 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457812|gb|AAF09734.1|AE001877_1 (AE001877)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 262
Score = 98.3 bits (241), Expect = 8e-20
Identities = 76/261 (29%), Positives = 128/261 (48%), Gaps = 21/261 (8%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
M D+H HL++ A A E + M I S R L FG ++ T+G
Sbjct: 12 MFDSHTHLDYLDDPASARGELGLTGMVCIGASAEHARNAVA------LAEQFGDVWATVG 65
Query: 61 YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLTL 120
HP + + + R E +LDH + + IGE GLD Y T+ R Q F L L
Sbjct: 66 LHPGDVEEDSPD-TRAAIEALLDHPR-VVGIGESGLDDYWNDTQ--RPAQLAAFEWQLEL 121
Query: 121 AEELKLPVVIHARE--AEDVALR-ILQNF----DVKAYFHSYTGPVKVAREIVENGHFVG 173
A P+VIH R+ +D A R +++ DV+ H +TG + +E G + G
Sbjct: 122 ARRSGKPLVIHTRDKPGQDSAHRGVIETLRDWPDVQVILHCFTGHAGLLACGLERGAYFG 181
Query: 174 IVTGITF--IPEVRDVARALELENILVETDSPYMSPY--KGVKNKPWFVEVVINELAKIK 229
+T+ E++ A+ + L+ +LVETD+P+++P +G N+P +V ++ +A ++
Sbjct: 182 FAGNVTYKNAVEIQAAAQQVPLDRLLVETDAPFLAPVPKRGKPNRPGYVRYTLDFVAGLR 241
Query: 230 EVPREEVEAITERNAKVFFGL 250
+ E+E +T+ NA+ +G+
Sbjct: 242 GLNPAELERVTDENARRVYGI 262
>pir||A82837 conserved hypothetical protein XF0177 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9104976|gb|AAF82990.1|AE003872_1 (AE003872)
conserved hypothetical protein [Xylella fastidiosa]
Length = 260
Score = 97.5 bits (239), Expect = 1e-19
Identities = 68/255 (26%), Positives = 125/255 (48%), Gaps = 9/255 (3%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
+ID+H HL+ + + AR++ I+ + W + L+P G
Sbjct: 5 LIDSHCHLDADAFDGDRAEIIARAQAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYG 64
Query: 61 YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLTL 120
HP + + + ++ L+H++ AIGE GLD+Y + R Q F L L
Sbjct: 65 LHPMFLTEHHPTHLHALRDW-LEHERPC-AIGECGLDFY--LEGLNREMQHTYFIRQLML 120
Query: 121 AEELKLPVVIHAREA-EDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTGIT 179
A E LPV++HAR A E+V I ++ HS++G ++ AR++ + G + + +T
Sbjct: 121 AREYALPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSLEQARQLWKLGFMISLGGAMT 180
Query: 180 F--IPEVRDVARALELENILVETDSPYM--SPYKGVKNKPWFVEVVINELAKIKEVPREE 235
+ + +A L+ +L+ETD+PY S +G +N+P + +++ +A +++ R E
Sbjct: 181 YPRAHRLHQLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE 240
Query: 236 VEAITERNAKVFFGL 250
+ +T N + FGL
Sbjct: 241 ISKVTRANTEQLFGL 255
>pir||A72736 hypothetical protein APE0423 - Aeropyrum pernix (strain K1)
>gi|5104065|dbj|BAA79381.1| (AP000059) 252aa long
hypothetical protein [Aeropyrum pernix]
Length = 252
Score = 95.6 bits (234), Expect = 5e-19
Identities = 77/255 (30%), Positives = 127/255 (49%), Gaps = 21/255 (8%)
Query: 3 DAHAHL-EFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLGY 61
D H HL E+ +E E I++ +S + V E W++ ++ + G + P LG+
Sbjct: 11 DMHVHLHEYSDREVEEILDADKSLVVVAVSDDLE----SAWRTLDLWHTFGGRVVPCLGF 66
Query: 62 HPNEARRGN----WEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
HP R G WE +R L ++ + +GE+GLD E R Q E+F F
Sbjct: 67 HPWNVREGRVWEAWEVLR------LAYRYGVPCLGEVGLDRRFVD-EYTWRVQNEVFDAF 119
Query: 118 LTLAEELKLPVVIHAREA-EDVALRILQNFDVKAYFHSYTGPVKVAREIVENGHFVGIVT 176
+ LAE++ + + IHA +A + VA RI + +H YTGP + R + E + I +
Sbjct: 120 VQLAEDMGVMLNIHAPDAWKHVAHRIGWTSRARFMYHWYTGPATLPRALPEGRVWFSINS 179
Query: 177 GITFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIK-EVPREE 235
I + VAR + L +++VE+D PY Y+G++ P V + +A+ + E P
Sbjct: 180 AIRVQEKSVRVAREIPLRSLVVESDGPY--NYRGLRLSPLMVRETVKLVAEARGEDPGRL 237
Query: 236 VEAITERNAKVFFGL 250
+EAI+ N++ GL
Sbjct: 238 MEAIS-LNSERLLGL 251
>pir||A82088 conserved hypothetical protein VC2353 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656921|gb|AAF95496.1|
(AE004305) conserved hypothetical protein [Vibrio
cholerae]
Length = 283
Score = 95.6 bits (234), Expect = 5e-19
Identities = 66/257 (25%), Positives = 132/257 (50%), Gaps = 10/257 (3%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKS-WEMLKPYFGFLFPTL 59
+ D H H +F A +E ++ + + W++ E+ + + ++ L
Sbjct: 22 LFDTHCHFDFPPFTATPELELQKAAQHGVRRLVVPSIGPQDWQAVTELAQRFPSTIYYAL 81
Query: 60 GYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFLT 119
G+HP + + +E+ ++ ++ A+GE GLD +V+ QE++ L+
Sbjct: 82 GFHPLYLDASSPTHLPALEKALMQAEQACVAVGECGLD---GMIDVDVALQEQMLIAQLS 138
Query: 120 LAEELKLPVVIHAREAEDVALRIL--QNFDVKAYFHSYTGPVKVAREIVENGHFVGIVTG 177
+A + KLPV++H+R + L++L Q F H+++G V+ A++ V+ G +G+
Sbjct: 139 MASQAKLPVILHSRRTHNRLLQLLKQQRFQQGGVLHAFSGSVQEAQQFVDLGFKIGVGGV 198
Query: 178 ITF--IPEVRDVARALELENILVETDSPYM--SPYKGVKNKPWFVEVVINELAKIKEVPR 233
IT+ + R AL +E+I++ETD+P M + ++G N P + V+ LA++K V
Sbjct: 199 ITYPRANKTRQAIAALPVEHIVLETDAPDMPLNGFQGQANHPAQLAKVLETLAELKGVSA 258
Query: 234 EEVEAITERNAKVFFGL 250
+ + I +N+++ FGL
Sbjct: 259 QYLAPILWQNSQMLFGL 275
>sp|P39408|YJJV_ECOLI HYPOTHETICAL 28.9 KD PROTEIN IN OSMY-DEOC INTERGENIC REGION
Length = 259
Score = 94.8 bits (232), Expect = 9e-19
Identities = 70/260 (26%), Positives = 127/260 (47%), Gaps = 16/260 (6%)
Query: 2 IDAHAHLEF--YKKEAEAIIEKA-RSRMKAIVDSITEYRKF-HVWKSWEMLKPYFGFLFP 57
ID H H +F + + EA +++A ++ + I+ TE F V E +P L+
Sbjct: 6 IDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP----LYA 61
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
LG HP + + + ++++ + ++ A+GEIGLD + + ER Q+ +
Sbjct: 62 ALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFER--QQWLLDEQ 119
Query: 118 LTLAEELKLPVVIHAREAEDVALRILQNFDV--KAYFHSYTGPVKVAREIVENGHFVGIV 175
L LA+ LPV++H+R D L+ D+ H ++G ++ A V+ G+ +G+
Sbjct: 120 LKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVG 179
Query: 176 TGITF--IPEVRDVARALELENILVETDSPYM--SPYKGVKNKPWFVEVVINELAKIKEV 231
IT+ + RDV L L ++L+ETD+P M + ++G N+P V L +++
Sbjct: 180 GTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRRE 239
Query: 232 PREEVEAITERNAKVFFGLP 251
P +E+ N F +P
Sbjct: 240 PADEIAQALLNNTYTLFNVP 259
>pir||D83200 conserved hypothetical protein PA3564 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949717|gb|AAG06952.1|AE004777_5 (AE004777)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 225
Score = 94.8 bits (232), Expect = 9e-19
Identities = 66/213 (30%), Positives = 112/213 (51%), Gaps = 11/213 (5%)
Query: 45 WEMLKPYFGFLFPTLGYHPNEARRGNWEKVRKVEEFI--LDHKKEIYAIGEIGLDYYHAK 102
W++ + G L+ LG HP R + + + +++ L + ++ A+GEIGLDYY
Sbjct: 14 WDLAQAEDG-LYAALGLHPVYLARHRPQHLDDLRQWLQRLRGETKLCAVGEIGLDYY--L 70
Query: 103 TEVERRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQ--NFDVKAYFHSYTGPVK 160
++R Q+ +F L LA E +LP +IH R A + L+ + + H++ G +
Sbjct: 71 EHLDRDAQQALFEAQLRLAAEFRLPALIHVRRAHAATIATLKRIRLERRGIIHAFAGSRE 130
Query: 161 VAREIVENGHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMSP--YKGVKNKPW 216
ARE ++ G +G+ T+ +R VA L E I++ETD+P M+P + G +N P
Sbjct: 131 EAREYLKLGFRLGLGGAPTWPQANRLRKVAAELPAEAIVLETDAPDMAPSMHPGQRNSPE 190
Query: 217 FVEVVINELAKIKEVPREEVEAITERNAKVFFG 249
+ + LA+++ V EE+ A + RNA FG
Sbjct: 191 HLPDICRALAELRGVDAEELAASSSRNAAELFG 223
>sp|P47255|Y009_MYCGE PUTATIVE DEOXYRIBONUCLEASE MG009 >gi|1361550|pir||I64200
hypothetical protein homolog MG009 - Mycoplasma
genitalium >gi|1045677|gb|AAC71225.1| (U39679) conserved
hypothetical protein [Mycoplasma genitalium]
Length = 262
Score = 93.2 bits (228), Expect = 3e-18
Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 26/264 (9%)
Query: 3 DAHAHLEFYKKEAEAIIEKARSRMKAI------VDSITEYRKFHVWKSWEMLKPYFGFLF 56
DAH HL +E IEK+ + K I V + + K V E+ K Y L
Sbjct: 5 DAHCHLNCEPLLSE--IEKSIANFKLINLKANVVGTDLDNSKIAV----ELAKKYPDLLK 58
Query: 57 PTLGYHPNEARRGNWEKVRK-VEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFR 115
T+G HPN+ +++K +K + E +++++ I IGE G DY++ +E +N+ F
Sbjct: 59 ATIGIHPNDVHLVDFKKTKKQLNELLINNRNFISCIGEYGFDYHYTTEFIELQNK--FFE 116
Query: 116 HFLTLAEELKLPVVIHAREAEDVALRILQNFDVK--AYFHSYTGPVKVAREIVE----NG 169
+AE KL ++H R+A + IL FH ++ + +A++++ N
Sbjct: 117 MQFEIAETNKLVHMLHIRDAHEKIYEILTRLKPTQPVIFHCFSQDINIAKKLLSLKDLNI 176
Query: 170 HFVGIVTGITFIPEVRDVARALEL---ENILVETDSPYM--SPYKGVKNKPWFVEVVINE 224
+ GI + + AL++ E +L ETDSP++ SP++G N P +V ++
Sbjct: 177 DIFFSIPGIVTFKNAQALHEALKIIPSELLLSETDSPWLTPSPFRGKVNWPEYVVHTVST 236
Query: 225 LAKIKEVPREEVEAITERNAKVFF 248
+A+IK++ E++ I +NAK F
Sbjct: 237 VAEIKKIEIAEMKRIIVKNAKKLF 260
>pir||C81413 hypothetical protein Cj0644 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968111|emb|CAB75280.1|
(AL139075) hypothetical protein Cj0644 [Campylobacter
jejuni]
Length = 271
Score = 93.2 bits (228), Expect = 3e-18
Identities = 72/265 (27%), Positives = 137/265 (51%), Gaps = 26/265 (9%)
Query: 1 MIDAHAHL--EFYKKEAEAIIEKA-RSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFP 57
++D H HL E +K + + + +A ++ ++ I+ + + + + + +F
Sbjct: 13 IVDTHCHLDSEAFKDDLDETLNRAFKNGIEKIIIPGADIKDLPYAAT---IAHKYKNIFF 69
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEV------ERRNQE 111
G HP E + EK+ + +++ D K A+GE GLDY+ K+++ E+ NQ+
Sbjct: 70 AAGVHPYEIDNYD-EKI--LRQYLCDEK--CVAVGECGLDYFRFKSDLAEEIQKEKENQK 124
Query: 112 EIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFD---VKAYFHSYTGPVKVAREIVEN 168
+IF L LA E K PV+IH+REA IL + V H + + + E
Sbjct: 125 KIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYSKDLVGGVLHCFNASEHLL-TLFEE 183
Query: 169 GHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVINE 224
G + GI +TF ++ ++ + + +L+ETD+PY++ PY+G +N+P + V+N+
Sbjct: 184 GFYFGIGGVLTFKNAKKLVEILPKIPKDKLLLETDAPYLTPEPYRGKRNEPLLTQFVVNK 243
Query: 225 LAKIKEVPREEVEAITERNA-KVFF 248
+ ++ + R+E+ I N+ K+FF
Sbjct: 244 MCEVLNLSRKELLEICFNNSEKLFF 268
>pir||B70124 conserved hypothetical protein BB0194 - Lyme disease spirochete
>gi|2688073|gb|AAC66570.1| (AE001129) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 269
Score = 91.7 bits (224), Expect = 8e-18
Identities = 70/246 (28%), Positives = 123/246 (49%), Gaps = 18/246 (7%)
Query: 1 MIDAHAHLEFYKKEA----EAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLF 56
+ID H H KK + I E ++ +D F+ K ++L PY +F
Sbjct: 17 LIDTHVHFYELKKRSLDVNYIINECFKNGFSYFLDVGLHPSDFNDRK--DLLSPYSN-VF 73
Query: 57 PTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRH 116
T G HP + ++++E+ ++ + + A+GE+GLDY+ A ++ Q +
Sbjct: 74 LTAGIHPLNLSDHFKDDIKQLEKILIS--ENVVAVGEMGLDYFKADN---KKFQIKALEE 128
Query: 117 FLTLAEELKLPVVIHAREAEDVALRILQ--NFDVKAYFHSYTGPVKVAREIVENGHFVGI 174
L LA++ K PV++H R+A D I++ NF + H Y+G + A++ ++ G V
Sbjct: 129 QLYLADKYKRPVILHIRDAYDDVYNIVRSLNFLNRGILHCYSGTYEHAKKFIDLGFKVSF 188
Query: 175 VTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVINELAKIKE 230
ITF +R + L + ++L+ETDSP+++ P +G N P F+ V E+A+IK
Sbjct: 189 SGNITFKNAQPLRILVGKLNINDLLIETDSPFLAPVPLRGKINSPLFLGYVCLEIARIKN 248
Query: 231 VPREEV 236
+V
Sbjct: 249 CSVNDV 254
>pir||E82944 hypothetical UU017 [imported] - Ureaplasma urealyticum
>gi|6898962|gb|AAF30422.1|AE002101_5 (AE002101)
hypothetical [Ureaplasma urealyticum]
Length = 265
Score = 91.3 bits (223), Expect = 1e-17
Identities = 60/203 (29%), Positives = 106/203 (51%), Gaps = 12/203 (5%)
Query: 52 FGFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQE 111
F FL ++ HPN+ + V +E+ I ++ I IGE GLDYYH + + Q+
Sbjct: 57 FKFLTCSVAIHPNDLHNIENDFVA-LEKLIAENIDYISCIGECGLDYYHEQN-YDHDFQK 114
Query: 112 EIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK-AYFHSYTGPVKVAREIVENGH 170
F+ + LA++ P+++H R A D A+ IL+ V+ H +T + A++ +E G+
Sbjct: 115 HWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKELAVQDVIIHCFTDKKEYAQQYIEMGY 174
Query: 171 FVGIVTGITFIP-------EVRDVARALELENILVETDSPYMSPY--KGVKNKPWFVEVV 221
++ ITF P E+ + + L+ ILVETD+PY++P +G N P++V
Sbjct: 175 YISYPGVITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQTNYPYYVLYT 234
Query: 222 INELAKIKEVPREEVEAITERNA 244
+A + + E+++ I N+
Sbjct: 235 SAFIANLLGITHEKMQKILLENS 257
>pir||G71494 probable php hydrolase - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3329038|gb|AAC68196.1| (AE001330) PHP
superfamily hydrolase [Chlamydia trachomatis]
Length = 263
Score = 90.9 bits (222), Expect = 1e-17
Identities = 69/259 (26%), Positives = 132/259 (50%), Gaps = 18/259 (6%)
Query: 1 MIDAHAHL---EFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFP 57
++DAH HL EF + + ++ + + +V+ T K + +S+ + Y ++F
Sbjct: 3 IVDAHVHLSSEEFIEDFGDVVLRGKTAGVTRVVNVTTT--KAELLRSFAYAEAYPDWMFY 60
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKK-EIYAIGEIGLDYYHAKTEVERRNQEEIFRH 116
+ P + + + E+ +EF + ++ AIGE+GLDY A E+ Q+E+
Sbjct: 61 HVAGTPPQDAQDDIEE--DFQEFCRAAEGGKLAAIGEVGLDYLFAVQASEQERQKEVLCR 118
Query: 117 FLTLAEELKLPVVIHAREAEDVALRILQN---FDVKA---YFHSYTGPVKVAREIVENGH 170
+L LA + +LP+V+H R A + IL + D +A H +TG + A E++
Sbjct: 119 YLQLALQHELPLVVHCRGAFEDFFHILDHVYRVDQQAKPGMLHCFTGTYEEATELLARDW 178
Query: 171 FVGIVTGITF--IPEVRDVARALELENILVETDSPYM--SPYKGVKNKPWFVEVVINELA 226
++ I +TF ++D+ + LE +LVETD+PY+ +P +G +N+P + + +A
Sbjct: 179 YISISGIVTFKNAKSLQDLVEKISLERLLVETDAPYLAPTPLRGKRNEPANIVHTLARIA 238
Query: 227 KIKEVPREEVEAITERNAK 245
+IK + E++ N +
Sbjct: 239 EIKGISVYELQDAVSTNVQ 257
>pir||H81159 conserved hypothetical protein NMB0771 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226002|gb|AAF41184.1| (AE002431) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 259
Score = 89.7 bits (219), Expect = 3e-17
Identities = 70/252 (27%), Positives = 124/252 (48%), Gaps = 18/252 (7%)
Query: 1 MIDAHAHLEF--YKKEAEAIIE--KARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLF 56
+ID+H HL F K+ ++ +A +A+ S++ V+ E + ++
Sbjct: 3 IIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESFSEVFAIAEAHE----HIY 58
Query: 57 PTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRH 116
T+G HP+ + VE H K + IGE GLDYY K ++ +++ F
Sbjct: 59 CTIGVHPDSKEAEEFSIAEMVEAAA--HPK-VVGIGETGLDYYWCKGDLSWQHKR--FAD 113
Query: 117 FLTLAEELKLPVVIHAREAEDVALRILQNFDVKA-YFHSYTGPVKVAREIVENGHFVGIV 175
+ A + LPV++H R+A L IL+ V + H ++ + AR ++ G ++
Sbjct: 114 HIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFARAAMDLGLYISFS 173
Query: 176 TGITF--IPEVRDVARALELENILVETDSPYMSPY--KGVKNKPWFVEVVINELAKIKEV 231
+TF P V++ A+ + + ILVETD+P+++P +G +N+P FV +AK++
Sbjct: 174 GIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPAFVRHTAEHIAKLRNQ 233
Query: 232 PREEVEAITERN 243
E+V A T N
Sbjct: 234 TLEQVAAYTTEN 245
>pir||E64716 conserved hypothetical protein HP1573 - Helicobacter pylori
(strain 26695) >gi|2314758|gb|AAD08613.1| (AE000655)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 254
Score = 88.9 bits (217), Expect = 5e-17
Identities = 66/260 (25%), Positives = 125/260 (47%), Gaps = 18/260 (6%)
Query: 2 IDAHAHLEF--YKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTL 59
ID H HL+ Y+ + E ++++ S K + + + F +F +
Sbjct: 3 IDTHCHLDHKDYENDLEEVLKE--SLEKGVTQCVIPGADMKDLNRAIEISEKFEGVFFAI 60
Query: 60 GYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRN----QEEIFR 115
G HP + + + E + H+K + AIGE GLDYY ER N Q+EIF
Sbjct: 61 GAHPYDVESFD----ESLFEKFVGHQKCV-AIGECGLDYYRLPELNERENYKSKQKEIFT 115
Query: 116 HFLTLAEELKLPVVIHAREAEDVALRILQNFDVKAY--FHSYTGPVKVAREIVENGHFVG 173
+ + + P++IH REA +L +L+N+ KA+ H + + + +G
Sbjct: 116 KQIEFSIQHNKPLIIHIREASFDSLNLLKNYP-KAFGVLHCFNADGMLLELSDRFYYGIG 174
Query: 174 IVTGITFIPEVRDVARALELENILVETDSPYMSP--YKGVKNKPWFVEVVINELAKIKEV 231
V+ + ++ + +L+ETDSPY++P ++G +N P ++ ++ ++A+I +
Sbjct: 175 GVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFRGTRNSPTYIPLIAQKIAEIINI 234
Query: 232 PREEVEAITERNAKVFFGLP 251
EE+ +++ NA++ F P
Sbjct: 235 ETEELASLSTHNAQMLFSFP 254
>gi|7662008 KIAA0218 gene product [Homo sapiens]
>gi|2501546|sp|Q93075|Y218_HUMAN PUTATIVE
DEOXYRIBONUCLEASE KIAA0218 >gi|1504018|dbj|BAA13208.1|
(D86972) similar to E.coli hypothetical 29.6 KD
protein(P1:YIGW_ECOLI) [Homo sapiens]
Length = 761
Score = 87.8 bits (214), Expect = 1e-16
Identities = 70/220 (31%), Positives = 107/220 (47%), Gaps = 23/220 (10%)
Query: 46 EMLKPYFGFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDY-YHAKTE 104
E+LK ++ G HP+ AR + + R + + L H K + A GE+GLDY Y T
Sbjct: 550 ELLKE--DLVWGAFGCHPHFARYYSESQERNLLQ-ALRHPKAV-AFGEMGLDYSYKCTTP 605
Query: 105 VERRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNF---DVKAYFHSYTGPVKV 161
V Q ++F L LA LK P+VIH REA++ L I++ F D K + H +TG V
Sbjct: 606 VPE--QHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKKFVPPDYKIHRHCFTGSYPV 663
Query: 162 AREIVENGHFVGIVTGITFIP------EVRDVARALELENILVETDSPYMSPYKGVKN-- 213
+++ +F + G T + E R+ R + LE I+VETD+PY P + K+
Sbjct: 664 IEPLLK--YFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPYFLPRQVPKSLC 721
Query: 214 ---KPWFVEVVINELAKIKEVPREEVEAITERNAKVFFGL 250
P + E+A++K+ P A N + L
Sbjct: 722 QYAHPGLALHTVREIARVKDQPLSLTLAALRENTSRLYSL 761
>pir||E81945 hypothetical protein NMA0982 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379685|emb|CAB84252.1|
(AL162754) hypothetical protein NMA0982 [Neisseria
meningitidis Z2491]
Length = 259
Score = 87.8 bits (214), Expect = 1e-16
Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 18/252 (7%)
Query: 1 MIDAHAHLEF--YKKEAEAIIE--KARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLF 56
+ID+H HL F K+ ++ +A +A+ S++ V+ E + ++
Sbjct: 3 IIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESFSEVFAVAEAHE----HIY 58
Query: 57 PTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRH 116
T+G HP+ + VE H K + IGE GLDYY K ++ +++ F
Sbjct: 59 CTIGVHPDSREAEEFSIAEMVEAAA--HPK-VVGIGETGLDYYWCKGDLSWQHKR--FAD 113
Query: 117 FLTLAEELKLPVVIHAREAEDVALRILQNFDVKA-YFHSYTGPVKVAREIVENGHFVGIV 175
+ A + LPV++H R+A L IL+ + H ++ AR ++ G ++
Sbjct: 114 HIEAANQTGLPVIVHTRDAAADTLAILKECKTNSGVIHCFSEDTAFARAAMDLGLYISFS 173
Query: 176 TGITF--IPEVRDVARALELENILVETDSPYMSPY--KGVKNKPWFVEVVINELAKIKEV 231
+TF P V++ A+ + + ILVETD+P+++P +G +N+P FV +AK++
Sbjct: 174 GIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPAFVRHTAEHIAKLRNQ 233
Query: 232 PREEVEAITERN 243
E+V A T N
Sbjct: 234 TLEQVAAYTTEN 245
>gi|11434838 KIAA0218 gene product [Homo sapiens]
Length = 761
Score = 87.8 bits (214), Expect = 1e-16
Identities = 70/220 (31%), Positives = 107/220 (47%), Gaps = 23/220 (10%)
Query: 46 EMLKPYFGFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDY-YHAKTE 104
E+LK ++ G HP+ AR + + R + + L H K + A GE+GLDY Y T
Sbjct: 550 ELLKE--DLVWGAFGCHPHFARYYSESQERNLLQ-ALRHPKAV-AFGEMGLDYSYKCTTP 605
Query: 105 VERRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNF---DVKAYFHSYTGPVKV 161
V Q ++F L LA LK P+VIH REA++ L I++ F D K + H +TG V
Sbjct: 606 VPE--QHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKKFVPPDYKIHRHCFTGSYPV 663
Query: 162 AREIVENGHFVGIVTGITFIP------EVRDVARALELENILVETDSPYMSPYKGVKN-- 213
+++ +F + G T + E R+ R + LE I+VETD+PY P + K+
Sbjct: 664 IEPLLK--YFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPYFLPRQVPKSLC 721
Query: 214 ---KPWFVEVVINELAKIKEVPREEVEAITERNAKVFFGL 250
P + E+A++K+ P A N + L
Sbjct: 722 QYAHPGLALHTVREIARVKDQPLSLTLAALRENTSRLYSL 761
>pir||B71803 hypothetical protein jhp1481 - Helicobacter pylori (strain J99)
>gi|4156101|gb|AAD07053.1| (AE001569) putative
[Helicobacter pylori J99]
Length = 254
Score = 87.0 bits (212), Expect = 2e-16
Identities = 67/264 (25%), Positives = 129/264 (48%), Gaps = 26/264 (9%)
Query: 2 IDAHAHLEF--YKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTL 59
ID H HL+ Y+ + + ++++ S K + + + F +F +
Sbjct: 3 IDTHCHLDHKDYENDLDEVLKE--SLEKGVTQCVIPGADMKDLNRAVGISEKFEGVFFAI 60
Query: 60 GYHPNEAR---RGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRN----QEE 112
G HP + G +EK + H+K + AIGE GLDYY ER N Q+E
Sbjct: 61 GAHPYDVESFDEGLFEK-------FVSHQKCV-AIGECGLDYYRLPELSERENYKSKQKE 112
Query: 113 IFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDVKAY--FHSYTGPVKVAREIVENGH 170
IF + + + P++IH REA +L +L+++ KA+ H + + E+ + +
Sbjct: 113 IFTKQIEFSIQHNKPLIIHIREASFDSLNLLKSYP-KAFGVLHCFNAD-SMLLELSDRFY 170
Query: 171 F-VGIVTGITFIPEVRDVARALELENILVETDSPYMSP--YKGVKNKPWFVEVVINELAK 227
+ +G V+ + ++ + +L+ETDSPY++P ++G +N P ++ ++ ++A+
Sbjct: 171 YGIGGVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFRGTRNSPTYIPLIAQKIAE 230
Query: 228 IKEVPREEVEAITERNAKVFFGLP 251
I + EE+ +++ NA+ F P
Sbjct: 231 IIHIETEELASLSTHNAQTLFNFP 254
>pir||G82127 conserved hypothetical protein VC2014 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656558|gb|AAF95162.1|
(AE004276) conserved hypothetical protein [Vibrio
cholerae]
Length = 255
Score = 87.0 bits (212), Expect = 2e-16
Identities = 70/266 (26%), Positives = 131/266 (48%), Gaps = 34/266 (12%)
Query: 2 IDAHAHLEFYK-----KEAEAIIEKA-RSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFL 55
+D+H HL+ + +++KA +++++ ++ F K M++P F +
Sbjct: 3 VDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFP--KMLAMIEP-FSQV 59
Query: 56 FPTLGYHPNEARRGNWEKVRKVEEFILD------HKKEIYAIGEIGLDYYHAKTEVERRN 109
+ + G HP + + +F LD + AIGE GLDY++ +
Sbjct: 60 YASCGVHPLDVQ----------SDFSLDLFHQYAQHPRVVAIGETGLDYHYQPETADL-- 107
Query: 110 QEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVAREIV 166
Q+ FR + A L P++IH R A+ L++L+ + H +T + A+ +
Sbjct: 108 QKLRFRQQIETAVALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDLAFAQAAM 167
Query: 167 ENGHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMS--PYKGVKNKPWFVEVVI 222
E G ++ I +TF ++++V +AL L+ +L+ETDSPY++ P++G +N+P +V V
Sbjct: 168 ELGFYISISGIVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVA 227
Query: 223 NELAKIKEVPREEVEAITERNAKVFF 248
+A +K V EV T +N + F
Sbjct: 228 AYIAALKGVSLTEVAQKTTQNFQNLF 253
>pir||S56602 yjjV protein - Escherichia coli >gi|537218|gb|AAA97274.1| (U14003)
ORF_o211 [Escherichia coli] >gi|1790838|gb|AAC77331.1|
(AE000508) orf, hypothetical protein [Escherichia coli
K12]
Length = 211
Score = 86.6 bits (211), Expect = 3e-16
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 8/203 (3%)
Query: 55 LFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIF 114
L+ LG HP + + + ++++ + ++ A+GEIGLD + + ER Q+ +
Sbjct: 11 LYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFER--QQWLL 68
Query: 115 RHFLTLAEELKLPVVIHAREAEDVALRILQNFDV--KAYFHSYTGPVKVAREIVENGHFV 172
L LA+ LPV++H+R D L+ D+ H ++G ++ A V+ G+ +
Sbjct: 69 DEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKI 128
Query: 173 GIVTGITF--IPEVRDVARALELENILVETDSPYM--SPYKGVKNKPWFVEVVINELAKI 228
G+ IT+ + RDV L L ++L+ETD+P M + ++G N+P V L ++
Sbjct: 129 GVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCEL 188
Query: 229 KEVPREEVEAITERNAKVFFGLP 251
+ P +E+ N F +P
Sbjct: 189 RREPADEIAQALLNNTYTLFNVP 211
>emb|CAB59647.1| (AL132674) hypothetical protein SCE87.02c [Streptomyces coelicolor
A3(2)]
Length = 296
Score = 84.3 bits (205), Expect = 1e-15
Identities = 70/273 (25%), Positives = 115/273 (41%), Gaps = 30/273 (10%)
Query: 3 DAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEM-LKPYFGFLFPTLGY 61
D+H HL+ E + KA S V ++ + W + T+
Sbjct: 27 DSHTHLDMQSGTVEEALAKAAS---VGVTTVVQVGCDLAGSRWAAETAAAHDAVHATVAL 83
Query: 62 HPNEARR------GNWEKVRKVE---EFILDHK----------KEIYAIGEIGLDYYHAK 102
HPNEA R W + E + LD ++ +GE GLDY+
Sbjct: 84 HPNEAPRIVHGDPDGWSRQGAREPGGDAALDDALAEIDRLAALPQVKGVGETGLDYFRTG 143
Query: 103 TEVERRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDV--KAYFHSYTGPVK 160
E + QE FR + +A+ +VIH R+A LR+L+ + FH Y+G +
Sbjct: 144 PE-GKEAQERSFRAHIEIAKRHGKTLVIHDRDAHTDVLRVLKEEGAPERTVFHCYSGDAE 202
Query: 161 VAREIVENGHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMSP--YKGVKNKPW 216
+A G+++ +TF +RD E +LVETD+P+++P Y+G N P+
Sbjct: 203 MAGICARAGYYMSFAGNVTFKNAQNLRDALAVAPPELVLVETDAPFLTPAPYRGRPNAPY 262
Query: 217 FVEVVINELAKIKEVPREEVEAITERNAKVFFG 249
V V + +A+++ V + + N FG
Sbjct: 263 LVPVTVRAMAEVRGVDEDTLATALAANTARAFG 295
>pir||C70603 hypothetical protein Rv1008 - Mycobacterium tuberculosis (strain
H37RV) >gi|2052145|emb|CAB08135.1| (Z94752) hypothetical
protein Rv1008 [Mycobacterium tuberculosis]
Length = 264
Score = 83.9 bits (204), Expect = 2e-15
Identities = 69/267 (25%), Positives = 130/267 (47%), Gaps = 25/267 (9%)
Query: 1 MIDAHAHLEFY-KKEAEAI---IEKARSRMKAIVDSITEYRKFHVWKS----WEMLKPYF 52
M+DAH HL+ ++A+ + +E+A + V ++ + + W + W+
Sbjct: 1 MVDAHTHLDACGARDADTVRSLVERAAAAGVTAVVTVADDLESARWVTRAAEWDRRVYAA 60
Query: 53 GFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLD-YYHAKTE--VERRN 109
L PT +A R E+ ++ H + + A+GE G+D Y+ + + E
Sbjct: 61 VALHPTRADALTDAARAELER-------LVAHPR-VVAVGETGIDMYWPGRLDGCAEPHV 112
Query: 110 QEEIFRHFLTLAEELKLPVVIHAREAEDVALRIL--QNFDVKAYFHSYTGPVKVAREIVE 167
Q E F + LA+ P++IH R+A+ L +L + H ++ +AR V+
Sbjct: 113 QREAFAWHIDLAKRTGKPLMIHNRQADRDVLDVLRAEGAPDTVILHCFSSDAAMARTCVD 172
Query: 168 NGHFVGIVTGITF--IPEVRDVARALELENILVETDSPYMSPY--KGVKNKPWFVEVVIN 223
G + + ++F E+R+ + +E +LVETD+PY++P+ +G+ N+P+ + +
Sbjct: 173 AGWLLSLSGTVSFRTARELREAVPLMPVEQLLVETDAPYLTPHPHRGLANEPYCLPYTVR 232
Query: 224 ELAKIKEVPREEVEAITERNAKVFFGL 250
LA++ EEV IT NA+ +GL
Sbjct: 233 ALAELVNRRPEEVALITTSNARRAYGL 259
>pir||G83286 secretion protein MttC PA2866 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948955|gb|AAG06254.1|AE004713_3
(AE004713) secretion protein MttC [Pseudomonas
aeruginosa]
Length = 267
Score = 83.5 bits (203), Expect = 2e-15
Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 16/213 (7%)
Query: 53 GFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEE 112
G LF T G HP+EA N + R + D + + A+GE GLD+ + R QE+
Sbjct: 58 GRLFTTAGVHPHEASHWNADTARGLRALFDDPR--VRAVGECGLDFNRDFSP--RPAQEK 113
Query: 113 IFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVAREIVENG 169
L LA EL+ PV +H R+A + L IL++F + A H +TG + ++
Sbjct: 114 ALEEQLALAVELQRPVFLHERDASERLLAILRDFRERLPAAVVHCFTGERRALYGYLDLD 173
Query: 170 HFVGIVTGITFI---PEVRDVARALELENILVETDSPYMSPY------KGVKNKPWFVEV 220
+GI I + D+ + + +++E+D+PY+ P K +N+P ++
Sbjct: 174 LHIGITGWINDERRGTHLHDLVGEIPVGRLMLESDAPYLLPRSLRPKPKNGRNEPAYLVE 233
Query: 221 VINELAKIKEVPREEVEAITERNAKVFFGLPLV 253
V++ +A+ + E + A T A+ FFGLP +
Sbjct: 234 VLDCVARHRGESAERLAAHTSAAARAFFGLPTI 266
>pir||B83275 conserved hypothetical protein PA2959 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949057|gb|AAG06347.1|AE004722_3 (AE004722)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 258
Score = 82.3 bits (200), Expect = 5e-15
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 88 IYAIGEIGLDYYHAKTEVERRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFD 147
+ AIGE GLDY++ E Q+E FR L A PV++H REA L +L+
Sbjct: 90 VVAIGETGLDYHYEPEAAEL--QQEAFRLHLEAARITAKPVIVHTREARADTLALLREAA 147
Query: 148 VK--AYFHSYTGPVKVAREIVENGHFVGIVTGITF--IPEVRDVARALELENILVETDSP 203
+ H +T ++AR ++ G ++ + +TF +R+VAR + + +LVETDSP
Sbjct: 148 LPQAGVLHCFTEDWEMARSALDLGFYISLSGIVTFRNADALREVARQVPADRLLVETDSP 207
Query: 204 YMS--PYKGVKNKPWFVEVVINELAKIKEVPREEVEAITERNAKVFFGL 250
Y++ P++G N P +V V LA ++ V E + T N F L
Sbjct: 208 YLAPIPHRGKPNLPEYVRDVAEFLATLRGVSLETLAEQTTANFHRLFPL 256
>pir||A82622 type V secretory pathway protein XF1913 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107011|gb|AAF84719.1|AE004011_4 (AE004011) type V
secretory pathway protein [Xylella fastidiosa]
Length = 268
Score = 81.1 bits (197), Expect = 1e-14
Identities = 69/268 (25%), Positives = 130/268 (47%), Gaps = 25/268 (9%)
Query: 1 MIDAHAHL--EFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPT 58
+ID A+L E + + +A++++A + +T + H + + + + G L+ T
Sbjct: 3 LIDIGANLTHESFDYDRDAVLQRAYEA-GVVQMVVTGSNRTHSSLALLLAQRHPGLLYAT 61
Query: 59 LGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHFL 118
G HP+ A + E +L KE+ A+GE GLDY+ + R Q+ F L
Sbjct: 62 AGVHPHCA--AEYTDECDAELRMLHAHKEVVAVGECGLDYF--RDFCPHRTQQHAFERQL 117
Query: 119 TLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVAREIVENGHFVGIV 175
LA E P+ +H REA + + I++ F + H +TG + + +++ ++GI
Sbjct: 118 QLASENGKPLFLHQREAHNDFMAIMRGFQGRLGPVVVHCFTGTGEELFDYLDHDWYIGIT 177
Query: 176 TGITFI---PEVRDVARALELENILVETDSPYMSPY------KGVKNKPWFVEVVINELA 226
+ +R++ R + + +++ETD+PY+ P K +N+P F+ ++ ELA
Sbjct: 178 GWLCDERRGMHLRELVRHIPEKRLMIETDAPYLLPRTLRPLPKDRRNEPAFLPHIVTELA 237
Query: 227 KIKEVPREEVEAITERN---AKVFFGLP 251
+ + E+V R+ A+ FF LP
Sbjct: 238 RNR---GEDVVTCAARSTVVAREFFSLP 262
>pir||T25456 hypothetical protein B0432.8 - Caenorhabditis elegans
>gi|1707143|gb|AAB37894.1| (U80836) B0432.8 gene product
[Caenorhabditis elegans]
Length = 364
Score = 80.8 bits (196), Expect = 2e-14
Identities = 54/202 (26%), Positives = 100/202 (48%), Gaps = 18/202 (8%)
Query: 65 EARRGNWEKVR---KVEEFILDHKKEIYAIGEIGLDYYHAK---TEVERRNQEEIFRHFL 118
E +RG K++ K+E+F ++H+++I +GE GLD+ ++ T + QE +F+ +
Sbjct: 161 EYKRGKSAKMKHISKMEQFFVEHERDIICVGECGLDHTISQFKLTTEDFEEQETVFKWQI 220
Query: 119 TLAEELKLPVV---------IHAREAEDVALRILQNFDV---KAYFHSYTGPVKVAREIV 166
LA+ + P++ +H+R A + IL V + H++ G + +
Sbjct: 221 DLAKHFEKPLILEIPDISRNVHSRSAARRTIEILLECHVAPDQVVLHAFDGTPGDLKLGL 280
Query: 167 ENGHFVGIVTGITFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELA 226
E G+ I E + ++ L +L+ETDSP + P KG KN P + + +A
Sbjct: 281 EAGYLFSIPPSFGKSEETTQLIESIPLSQLLLETDSPALGPEKGCKNVPANLRISAEIVA 340
Query: 227 KIKEVPREEVEAITERNAKVFF 248
KIK++ +++ + T NA F
Sbjct: 341 KIKKLEIDDIISATSTNANRIF 362
>sp|P78005|Y009_MYCPN PUTATIVE DEOXYRIBONUCLEASE MG009 HOMOLOG (D12_ORF261)
>gi|2146296|pir||S73471 hypothetical protein yabD -
Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1673805|gb|AAB95793.1| (AE000016) hydrolase
[Mycoplasma pneumoniae]
Length = 261
Score = 80.0 bits (194), Expect = 3e-14
Identities = 67/264 (25%), Positives = 123/264 (46%), Gaps = 26/264 (9%)
Query: 3 DAHAHLEFYKKEAEAIIEK-----ARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFP 57
DAH HL E ++E+ A R+ + ++ + + + K + L
Sbjct: 5 DAHCHLN-----CEPLLEQHEKSLANFRLIGLKANVVGTNLTNSQIAVNLAKQHPDLLKA 59
Query: 58 TLGYHPNEARRGNWEKVRK-VEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRH 116
+G HPN+ + + + + +++ + H+ I IGE G DY++ K + + QE+ F
Sbjct: 60 GVGIHPNDVQLFDLKAAQATLKKLVSTHRSFISCIGEYGFDYHYTKDYITQ--QEQFFLM 117
Query: 117 FLTLAEELKLPVVIHAREAEDVALRILQNFDVK--AYFHSYTGPVKVAREIVENGHFVGI 174
LAE+ +L ++H R+ + +L+ K FH ++ A +++ VG+
Sbjct: 118 QFQLAEQYQLVHMLHVRDVHERIYEVLKRLKPKQPVVFHCFSEDTNTALKLLTLRE-VGL 176
Query: 175 -----VTGITFIPEVRDVARALEL---ENILVETDSPYMSP--YKGVKNKPWFVEVVINE 224
+ GI +++ AL + E +L ETDSPY++P ++G N P V +
Sbjct: 177 KVYFSIPGIVTFKNAKNLQAALSVIPTELLLSETDSPYLAPVPFRGKTNWPECVVHTVQT 236
Query: 225 LAKIKEVPREEVEAITERNAKVFF 248
+A IK+VP E++ NAK F
Sbjct: 237 IADIKQVPLAEIKQAIVHNAKKLF 260
>pir||E64174 hypothetical protein HI1664 - Haemophilus influenzae (strain Rd
KW20) >gi|1574514|gb|AAC23310.1| (U32839) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 259
Score = 78.8 bits (191), Expect = 6e-14
Identities = 64/259 (24%), Positives = 127/259 (48%), Gaps = 18/259 (6%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
+ D+H HL+ E I++ + K I K + + Y L+ G
Sbjct: 10 LFDSHLHLDQLSDEN---IQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYPKKLYIAAG 66
Query: 61 YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQE-----EIFR 115
+HP E + + E+ +K+ ++I +H I AIGE+GL +Y + E N + E+
Sbjct: 67 FHP-EQQLPSLEEQKKLFQWIDEHHSSISAIGEVGLPHYSKR---ENPNLDYVPYIELLE 122
Query: 116 HFLTLAEELKLPVVIHAREAE-DVALRILQNFDV-KAYFHSYTGPVKVAREIVENGHFVG 173
F+ +A++ LP+ +H + ++AL +LQ ++ +A+FH + K ++ +F
Sbjct: 123 RFILIAKKWDLPLNLHIVHNDVEIALELLQKHNIQRAHFHWFKTDEKSFQKFFSTPYFAS 182
Query: 174 IVTGITFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEV--VINELAKIKEV 231
+ I + + + VA+ L L +++ETDSP+ ++G + ++ V+ +LA++K +
Sbjct: 183 LTPDILWNSKTQYVAQHLSLNRLMIETDSPWQ--HEGFERAGISEQLLAVLQKLAELKSL 240
Query: 232 PREEVEAITERNAKVFFGL 250
P V+ N + F+ L
Sbjct: 241 PLHSVQKQILLNTQQFYRL 259
>sp|P45305|YG64_HAEIN PUTATIVE DEOXYRIBONUCLEASE HI1664
Length = 251
Score = 78.8 bits (191), Expect = 6e-14
Identities = 64/259 (24%), Positives = 127/259 (48%), Gaps = 18/259 (6%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLG 60
+ D+H HL+ E I++ + K I K + + Y L+ G
Sbjct: 2 LFDSHLHLDQLSDEN---IQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYPKKLYIAAG 58
Query: 61 YHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQE-----EIFR 115
+HP E + + E+ +K+ ++I +H I AIGE+GL +Y + E N + E+
Sbjct: 59 FHP-EQQLPSLEEQKKLFQWIDEHHSSISAIGEVGLPHYSKR---ENPNLDYVPYIELLE 114
Query: 116 HFLTLAEELKLPVVIHAREAE-DVALRILQNFDV-KAYFHSYTGPVKVAREIVENGHFVG 173
F+ +A++ LP+ +H + ++AL +LQ ++ +A+FH + K ++ +F
Sbjct: 115 RFILIAKKWDLPLNLHIVHNDVEIALELLQKHNIQRAHFHWFKTDEKSFQKFFSTPYFAS 174
Query: 174 IVTGITFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEV--VINELAKIKEV 231
+ I + + + VA+ L L +++ETDSP+ ++G + ++ V+ +LA++K +
Sbjct: 175 LTPDILWNSKTQYVAQHLSLNRLMIETDSPWQ--HEGFERAGISEQLLAVLQKLAELKSL 232
Query: 232 PREEVEAITERNAKVFFGL 250
P V+ N + F+ L
Sbjct: 233 PLHSVQKQILLNTQQFYRL 251
>pir||T32529 hypothetical protein CD4.2 - Caenorhabditis elegans
>gi|2662576|gb|AAB88340.1| (AF036694) CD4.2 gene product
[Caenorhabditis elegans]
Length = 286
Score = 78.8 bits (191), Expect = 6e-14
Identities = 64/237 (27%), Positives = 124/237 (52%), Gaps = 25/237 (10%)
Query: 1 MIDAHAHLEF--YKKEAEAIIEKARSR-MKAIVDSITEYRKFHVWKSWEMLKPYFGFLFP 57
++D A+L Y+K+ ++++A+ + I+ + T + H + ++++ Y GFL+
Sbjct: 6 LVDIGANLGHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISH--ECADLVEKYPGFLYF 63
Query: 58 TLGYHPNEARR---GNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIF 114
T G HP++A+ G E ++K++E A+GE GLD+ + + Q+E+F
Sbjct: 64 TAGVHPHDAKDWNDGTLEALKKLQE-----NPSCVAVGECGLDFNRNFSPQDV--QKEVF 116
Query: 115 RHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVAREIVENGHF 171
+ +A +L+ P+ IH REA + ++IL A H +TG V A++ +E G +
Sbjct: 117 AKQVDMAVKLQKPLFIHEREAHEDMVKILTAAGPSLPPAVIHCFTGTVVEAKKYLEMGFY 176
Query: 172 VGIVTGITFIPEVRDVARA------LELENILVETDSPYMSPYKGVKNKPWFVEVVI 222
+G+ TG + + +A + +E +++ETD+PYM P K P ++ +I
Sbjct: 177 IGL-TGFLWKDRSDNGVQAGLRSGEIPIEKLVLETDAPYMYPKINDKKIPKEIKSLI 232
>gb|AAC19243.1| (AF067848) MttC [Escherichia coli]
Length = 264
Score = 78.4 bits (190), Expect = 8e-14
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 16/217 (7%)
Query: 46 EMLKPYFGFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEV 105
+ L + + T G HP+++ + W+ + L + E+ AIGE GLD+ +
Sbjct: 50 QKLARQYSSCWSTAGVHPHDSSQ--WQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTP 107
Query: 106 ERRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVA 162
E QE F L +A +L +PV +H R+A + + +L+ + K A H +TG +
Sbjct: 108 EE--QERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEM 165
Query: 163 REIVENGHFVGIVTGITFIP---EVRDVARALELENILVETDSPYMSPY------KGVKN 213
+ V +G ++GI + E+R++ + E +L+ETD+PY+ P +N
Sbjct: 166 QACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRN 225
Query: 214 KPWFVEVVINELAKIKEVPREEVEAITERNAKVFFGL 250
+P + ++ +A + + A T+ NAK FG+
Sbjct: 226 EPAHLPHILQRIAHWRGEDAAWLAATTDANAKTLFGI 262
>gb|AAF01585.1|AC009895_6 (AC009895) unknown protein [Arabidopsis thaliana]
Length = 272
Score = 78.4 bits (190), Expect = 8e-14
Identities = 71/271 (26%), Positives = 122/271 (44%), Gaps = 29/271 (10%)
Query: 1 MIDAHAHLEFYKKEAEAIIEKARSRMKA-IVDSITEYRKFHVW-KSWEMLKPY---FGFL 55
+ DAH HL+ + +I+KA + A + +T + K W ++K + +
Sbjct: 3 LFDAHCHLQ-----DKRVIDKASQLISAALAVGVTNFAVNGTSEKDWNLVKEMGETYPSV 57
Query: 56 FPTLGYHP--NEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEI 113
P G HP R +W K K +F A+GEIGLD ++ +Q +
Sbjct: 58 VPCFGLHPWFIADRSPHWFKTLK--KFF--ETTPTAAVGEIGLDKGPLAGGIDYSDQLVV 113
Query: 114 FRHFLTLAEELKLPVVIHAREAEDVALRILQN---FDVKAYFHSYTGPVKVAREIVENGH 170
FR L LA+EL PV +H +A D L I+++ F HS+ G +V ++ E G
Sbjct: 114 FRPQLELAKELNKPVAVHCIDAFDDLLEIMRSIGPFPAGVILHSFNGSAEVVPKLAELGA 173
Query: 171 FVGIVTGITFIPE--VRDVARALELENILVETDSP--------YMSPYKGVKNKPWFVEV 220
+ T+I E + +++ + +L+ETDSP S K N+P +
Sbjct: 174 YFSFSGWFTYIDEKIAKKTLKSIPSDRLLLETDSPDGLPKSDESSSDPKPTLNEPANILA 233
Query: 221 VINELAKIKEVPREEVEAITERNAKVFFGLP 251
V++ +A + + +EE+ ++ N+ F P
Sbjct: 234 VLDYVANLSNMKKEELAELSYVNSVRLFSYP 264
>emb|CAB60325.1| (AL110480) contains similarity to Pfam domain: PF01026
(Metalloenzyme of unknown function), Score=111.1,
E-value=7e-30, N=1 [Caenorhabditis elegans]
Length = 435
Score = 78.0 bits (189), Expect = 1e-13
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 29/235 (12%)
Query: 42 WKSWEMLKPYFGFLFPTLGYHPNEARR-GNWEKVRKVEEFILDHKKE--IYAIGEIGLDY 98
W E+ P + L T G HP+ A+ G E+IL +E + A+GE G+D
Sbjct: 205 WIVKELASPLY--LGTTWGCHPHFAQHWGRMGVFWTTMEYILSDAEEWKVLAVGECGIDL 262
Query: 99 YHAKTEVERRNQEEIFRHFLTLAEELKLPVVIHAR-----EAEDVALRIL-QNFDV---- 148
+ ++E+E Q+++F + LA + KLP+VIH R AE+ L+IL + DV
Sbjct: 263 HRCESELEV--QKDVFEKHVALAFKFKLPLVIHCRNGSKGRAEEECLQILKKKMDVNHKF 320
Query: 149 -KAYFHSYTGPVKVAREIVE---NGHFVGIVTGITF-IPEVRDVARALELENILVETDSP 203
K + H +T +VA+ ++ + HF T P+++ + R + L+ IL+ETD P
Sbjct: 321 LKIHRHCFTENWEVAQMWLKQCPDVHFGFTPAVFTMGAPQIQAI-RNIPLDRILLETDGP 379
Query: 204 YMSP--YKGVKNK----PWFVEVVINELAKIKEVPREEVEAITERNAKVFFGLPL 252
Y P Y GV P +++A+IK +P EEV T N + + LP+
Sbjct: 380 YFKPKCYDGVAPPKVCLPGMAIATASKIAEIKNLPIEEVLRATFNNTRRVYQLPV 434
>pir||T26559 hypothetical protein Y24F12A.b - Caenorhabditis elegans
Length = 544
Score = 77.6 bits (188), Expect = 1e-13
Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 29/234 (12%)
Query: 42 WKSWEMLKPYFGFLFPTLGYHPNEARR-GNWEKVRKVEEFILDHKKE--IYAIGEIGLDY 98
W E+ P + L T G HP+ A+ G E+IL +E + A+GE G+D
Sbjct: 205 WIVKELASPLY--LGTTWGCHPHFAQHWGRMGVFWTTMEYILSDAEEWKVLAVGECGIDL 262
Query: 99 YHAKTEVERRNQEEIFRHFLTLAEELKLPVVIHAR-----EAEDVALRIL-QNFDV---- 148
+ ++E+E Q+++F + LA + KLP+VIH R AE+ L+IL + DV
Sbjct: 263 HRCESELEV--QKDVFEKHVALAFKFKLPLVIHCRNGSKGRAEEECLQILKKKMDVNHKF 320
Query: 149 -KAYFHSYTGPVKVAREIVE---NGHFVGIVTGITF-IPEVRDVARALELENILVETDSP 203
K + H +T +VA+ ++ + HF T P+++ + R + L+ IL+ETD P
Sbjct: 321 LKIHRHCFTENWEVAQMWLKQCPDVHFGFTPAVFTMGAPQIQAI-RNIPLDRILLETDGP 379
Query: 204 YMSP--YKGVKNK----PWFVEVVINELAKIKEVPREEVEAITERNAKVFFGLP 251
Y P Y GV P +++A+IK +P EEV T N + + LP
Sbjct: 380 YFKPKCYDGVAPPKVCLPGMAIATASKIAEIKNLPIEEVLRATFNNTRRVYQLP 433
>sp|P27859|TATD_ECOLI SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATD
>gi|3123499|emb|CAA06727.1| (AJ005830) TatD protein
[Escherichia coli]
Length = 264
Score = 76.9 bits (186), Expect = 2e-13
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 46 EMLKPYFGFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEV 105
+ L + + T G HP+++ + W+ + L + E+ AIGE GLD+ +
Sbjct: 50 QKLARQYSSCWSTAGVHPHDSSQ--WQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTP 107
Query: 106 ERRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVA 162
E QE F L +A +L +PV +H R+A + + +L+ + K A H +TG +
Sbjct: 108 EE--QERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEM 165
Query: 163 REIVENGHFVGIVTGITFIP---EVRDVARALELENILVETDSPYMSPY------KGVKN 213
+ V +G ++GI + E+R++ + E +L+ETD+PY+ P +N
Sbjct: 166 QACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRN 225
Query: 214 KPWFVEVVINELAKIKEVPREEVEAITERNAKVFFGL 250
+P + ++ +A + + A T+ N K FG+
Sbjct: 226 EPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGI 262
>pir||H81822 conserved hypothetical protein NMA1946 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380578|emb|CAB85166.1| (AL162757) conserved
hypothetical protein [Neisseria meningitidis Z2491]
Length = 284
Score = 76.5 bits (185), Expect = 3e-13
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 33/216 (15%)
Query: 40 HVWKSWEMLKPYFGFLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYY 99
H W S ++ +P F L TL HP W +GEIGLD+Y
Sbjct: 95 HPWFSDDVSEPDFQLLEQTLKAHPTA-----W-------------------VGEIGLDFY 130
Query: 100 H-AKTEVERRNQEEIFRHFLTLAEELKLPVVIHAREAE-DVALRILQN-FDVKAYFHSYT 156
+T +R Q ++F L +A+ L+ V+IH +A D+A + Q F H+++
Sbjct: 131 DKTQTPPQRERQIQVFVRQLEIAQTLRRRVIIHNLKATADIAAAVKQTGFAQGGIVHAFS 190
Query: 157 GPVKVAREIVENGHFVGIVTGITFIP---EVRDVARALELENILVETDSPYMSPYKGVKN 213
G + AR + + G +GI + + P +VRD +AL + ++ETDSP+M K N
Sbjct: 191 GSAEEARVLTKLGFKIGIGS-LLLNPNARKVRDTLKALNDGDFVLETDSPFM--LKKEIN 247
Query: 214 KPWFVEVVINELAKIKEVPREEVEAITERNAKVFFG 249
P + + A+I+ EE+ +TERNA G
Sbjct: 248 TPANIPGIAKIAAEIRGTCVEEIAKVTERNADALLG 283
>gb|AAF33415.1| (AF233324) 82% identity to E. coli hypothetical protein (YIGW)
(SW:P27859); contains similarity to Pfam PF01026 family
(Uncharacterized protein family UPF0006), score=364.7,
E=9.3e-106, N=1 [Salmonella typhimurium LT2]
Length = 260
Score = 76.1 bits (184), Expect = 4e-13
Identities = 53/203 (26%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 58 TLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEIFRHF 117
T G HP+++ + W + L ++ E+ AIGE GLD+ + + QE F+
Sbjct: 58 TAGVHPHDSSQ--WSPASEDAIIALANQPEVVAIGECGLDFNRNFSTPQE--QERAFQAQ 113
Query: 118 LTLAEELKLPVVIHAREAEDVALRILQNFDVK---AYFHSYTGPVKVAREIVENGHFVGI 174
L +A EL++P+ +H R+A + L +L + A H +TG + + V+ G ++GI
Sbjct: 114 LQIAAELQIPIFMHCRDAHERFLVLLDPWLDSLPGAILHCFTGSRQQMQACVDRGLYIGI 173
Query: 175 VTGITFIP---EVRDVARALELENILVETDSPYMSPY------KGVKNKPWFVEVVINEL 225
+ E+R++ + E +L+ETD+PY+ P +N+P ++ ++ +
Sbjct: 174 TGWVCDERRGLELRELLPFIPAEKLLIETDAPYLLPRDLTPKPTSRRNEPAYLPHILERI 233
Query: 226 AKIKEVPREEVEAITERNAKVFF 248
A + + + A+T+ NA+ F
Sbjct: 234 ALWRGEDPQWLAAMTDANARTLF 256
>pir||A71258 conserved hypothetical protein TP0979 - syphilis spirochete
>gi|3323301|gb|AAC65934.1| (AE001265) conserved
hypothetical protein [Treponema pallidum]
Length = 257
Score = 75.7 bits (183), Expect = 5e-13
Identities = 66/264 (25%), Positives = 127/264 (48%), Gaps = 23/264 (8%)
Query: 1 MIDAHAHLEFYKK---EAEAIIEKAR----SRMKAIVDSITEYRKFHVWKSWEMLKPYFG 53
+ D HAH+ E ++++AR +R+ +I +S+ ++ + E L+ +
Sbjct: 3 IFDTHAHIGLIHPDPVERLRVVQEARRASVTRIMSICNSLHDFAAVY-----ETLQ-FSP 56
Query: 54 FLFPTLGYHPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKTEVERRNQEEI 113
++ +G P+E + + +++ + ++ A+GE GLDY K ++R+Q +
Sbjct: 57 SVYHAVGVSPSEVMAPGKDWIDTIQKSL--QLPQVVALGETGLDY--CKKYGDKRSQIGL 112
Query: 114 FRHFLTLAEELKLPVVIHAREAEDVALRILQNF--DVKAYFHSYTGPVKVAREIVENGHF 171
F L +A + K PV+IH R A L IL D FH Y+ + AR ++ +
Sbjct: 113 FITQLDIASKAKKPVIIHNRGAGQDILDILSERIPDQGGVFHCYSEDAEYARMALDLPVY 172
Query: 172 VGIVTGITF--IPEVRDVARALELENILVETDSPYMSP--YKGVKNKPWFVEVVINELAK 227
+T+ + + AL L+ ILVE++SP+MSP Y+ +N+P + +A+
Sbjct: 173 FSFAGNLTYRNARNLHETVLALPLDRILVESESPFMSPATYRNKRNRPAHTVETVEFMAE 232
Query: 228 IKEVPREEVEAITERNAKVFFGLP 251
+ ++ E+ +N+ F LP
Sbjct: 233 LLDMDMLELADQLWKNSCACFHLP 256
>pir||H81053 conserved hypothetical protein NMB1687 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226941|gb|AAF42035.1| (AE002519) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 256
Score = 74.5 bits (180), Expect = 1e-12
Identities = 57/177 (32%), Positives = 94/177 (52%), Gaps = 10/177 (5%)
Query: 79 EFILDHKKEIYAIGEIGLDYYH-AKTEVERRNQEEIFRHFLTLAEELKLPVVIHAREAE- 136
E +L H + + +GEIGLD+Y +T +R Q ++F L +A+ L+ V+IH +A
Sbjct: 83 ETMLAHYPQAW-VGEIGLDFYDKTQTSQQRERQIQVFVRQLEIAQTLRRRVIIHNLKATA 141
Query: 137 DVALRILQN-FDVKAYFHSYTGPVKVAREIVENGHFVGIVTGITFIP---EVRDVARALE 192
D+A + Q F H+++G + AR + + G +GI + + P +VRD +AL
Sbjct: 142 DIAAAVKQTGFAQGGIVHAFSGSAEEARVLTKLGFKIGIGS-LLLNPNARKVRDTLKALN 200
Query: 193 LENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVEAITERNAKVFFG 249
+ ++ETDSP+M K N P + + A+I+ EE+ +TERNA G
Sbjct: 201 DGDFVLETDSPFM--LKKEINTPANIPGIAKIAAEIRGTCVEEIAKVTERNADALLG 255
>dbj|BAA21418.1| (AB004537) HYPOTHETICAL 47.4KD PROTEIN IN SHP1-SEC17 INTERGENIC
REGION [Schizosaccharomyces pombe]
Length = 258
Score = 71.0 bits (171), Expect = 1e-11
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 19/162 (11%)
Query: 58 TLGYHPNEAR------RGNWEKVRKVEEFILDHKK--EIYAIGEIGLDY---YHAKTEVE 106
T+G HP +A+ G + + K+E K ++ A GE GLDY ++A +V
Sbjct: 27 TVGVHPCQAQCFLRHSEGPEDYLVKLEALANKGKASGKVVAFGEFGLDYDRLHYAPADV- 85
Query: 107 RRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNF----DVKAYFHSYTGPVKVA 162
Q+ F L +A ++LP+ +H+R AE+ IL+ + K HS+TG +
Sbjct: 86 ---QKMYFEEQLKVAVRVQLPLFLHSRNAENDFFAILEKYLPELPKKGVVHSFTGSIDEM 142
Query: 163 REIVENGHFVGIVTGITFIPEVRDVARALELENILVETDSPY 204
R +E+G +VG+ E +V RA+ LE +L+ETD+P+
Sbjct: 143 RRCIEHGLYVGVNGCSLKTEENLEVVRAIPLEKMLLETDAPW 184
>pir||T39700 hypothetical protein SPAC17A3.08 - fission yeast
(Schizosaccharomyces pombe) >gi|5679727|emb|CAB51767.1|
(AL109652) hypothetical protein [Schizosaccharomyces
pombe]
Length = 312
Score = 71.0 bits (171), Expect = 1e-11
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 19/162 (11%)
Query: 58 TLGYHPNEAR------RGNWEKVRKVEEFILDHKK--EIYAIGEIGLDY---YHAKTEVE 106
T+G HP +A+ G + + K+E K ++ A GE GLDY ++A +V
Sbjct: 81 TVGVHPCQAQCFLRHSEGPEDYLVKLEALANKGKASGKVVAFGEFGLDYDRLHYAPADV- 139
Query: 107 RRNQEEIFRHFLTLAEELKLPVVIHAREAEDVALRILQNF----DVKAYFHSYTGPVKVA 162
Q+ F L +A ++LP+ +H+R AE+ IL+ + K HS+TG +
Sbjct: 140 ---QKMYFEEQLKVAVRVQLPLFLHSRNAENDFFAILEKYLPELPKKGVVHSFTGSIDEM 196
Query: 163 REIVENGHFVGIVTGITFIPEVRDVARALELENILVETDSPY 204
R +E+G +VG+ E +V RA+ LE +L+ETD+P+
Sbjct: 197 RRCIEHGLYVGVNGCSLKTEENLEVVRAIPLEKMLLETDAPW 238
>gb|AAK41291.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 232
Score = 69.9 bits (168), Expect = 3e-11
Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 3 DAHAHLEFYKKEAEAIIEKARSR-MKAIVDSITEYRKFHVWKSWEMLKPYFGFLFPTLGY 61
DAH H + KK+ E + A S ++ +D+ + KS +L +G
Sbjct: 6 DAHCHYSYLKKKYEGYLIAAVSMDYQSAMDTFS-------LKSDNVLVG--------VGI 50
Query: 62 HPNEARRGNWEKVRKVEEFILDHKKEIYAIGEIGLDYYHAKT--EVERRNQEEIFRHFLT 119
HP R + E + ++ I+ + +GE+GLDY AK E++ + EE +
Sbjct: 51 HP---WRVHEEDLTRILSLII----KADFVGEVGLDYRFAKAPKELQIKYFEEQIK---- 99
Query: 120 LAEELKLPVVIHAREAEDVALRILQNFDVK-AYFHSYTGPVKVAREIVENGHFVGIVTGI 178
A E KL + +HA +A A IL DVK A FH YTGP+ + ++I G+F+ I +
Sbjct: 100 -AGEGKL-INVHALDAWKDAFNILVKNDVKSAIFHWYTGPINLLKDIESAGYFISINPSV 157
Query: 179 TFIPEVRDVARALELENILVETDSPYMSPYKGVKNKPWFVEVVINELAKIKEVPREEVEA 238
+F + ++V + ++L+N+L E+D Y Y+G +P + I+ ++ + ++
Sbjct: 158 SFQKKHQEVLKNVDLKNVLTESDGGY--EYRGKLLEPSDIPNAISFMSNFLGIEEYKLVR 215
Query: 239 ITERNAKVFFGL 250
I N +G+
Sbjct: 216 IISNNFFKAYGV 227
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.139 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92531565
Number of Sequences: 2977
Number of extensions: 3813735
Number of successful extensions: 10262
Number of sequences better than 1.0e-10: 60
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 10086
Number of HSP's gapped (non-prelim): 61
length of query: 253
length of database: 189,106,746
effective HSP length: 54
effective length of query: 199
effective length of database: 156,788,448
effective search space: 31200901152
effective search space used: 31200901152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)