BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0710 (PAB0710) DE:Hypothetical protein
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75084 hypothetical protein PAB0710 - Pyrococcus abyssi (st...   213  6e-55
pir||E71063 hypothetical protein PH1203 - Pyrococcus horikoshii ...   171  3e-42

>pir||E75084 hypothetical protein PAB0710 - Pyrococcus abyssi (strain Orsay)
           >gi|5458490|emb|CAB49978.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score =  213 bits (536), Expect = 6e-55
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MITSGTLRSSLMFLAPTKNITFLISSAYPFIILITPSTSPLAAGLNTGSAIPTIEAPMAK 60
           MITSGTLRSSLMFLAPTKNITFLISSAYPFIILITPSTSPLAAGLNTGSAIPTIEAPMAK
Sbjct: 1   MITSGTLRSSLMFLAPTKNITFLISSAYPFIILITPSTSPLAAGLNTGSAIPTIEAPMAK 60

Query: 61  AFAIVIPSLIPPLAIMGKLVAHLTSAKLIAVLIPQSQNFKAKLRFSPSFVL 111
           AFAIVIPSLIPPLAIMGKLVAHLTSAKLIAVLIPQSQNFKAKLRFSPSFVL
Sbjct: 61  AFAIVIPSLIPPLAIMGKLVAHLTSAKLIAVLIPQSQNFKAKLRFSPSFVL 111


>pir||E71063 hypothetical protein PH1203 - Pyrococcus horikoshii
           >gi|3257620|dbj|BAA30303.1| (AP000005) 111aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 111
           
 Score =  171 bits (428), Expect = 3e-42
 Identities = 89/111 (80%), Positives = 96/111 (86%)

Query: 1   MITSGTLRSSLMFLAPTKNITFLISSAYPFIILITPSTSPLAAGLNTGSAIPTIEAPMAK 60
           M+T GTLR+SL+FLAPT+NITF ISSAYP IIL TPSTSPLAAGLNTG AIPT EAP+A 
Sbjct: 1   MMTRGTLRNSLIFLAPTRNITFFISSAYPLIILTTPSTSPLAAGLNTGRAIPTKEAPIAN 60

Query: 61  AFAIVIPSLIPPLAIMGKLVAHLTSAKLIAVLIPQSQNFKAKLRFSPSFVL 111
           A AI+ PSLIPPLAI+GKLVAHLTSAKLIAVLIPQSQNF A   FS SF L
Sbjct: 61  ALAIITPSLIPPLAIIGKLVAHLTSAKLIAVLIPQSQNFNAIFLFSLSFAL 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.136    0.375 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35092802
Number of Sequences: 2977
Number of extensions: 1187042
Number of successful extensions: 4003
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4001
Number of HSP's gapped (non-prelim): 2
length of query: 111
length of database: 189,106,746
effective HSP length: 55
effective length of query: 56
effective length of database: 156,189,961
effective search space: 8746637816
effective search space used: 8746637816
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 159 (66.3 bits)