BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0711 (PAB0711) DE:Hypothetical protein
         (292 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75084 hypothetical protein PAB0711 - Pyrococcus abyssi (st...   545  e-154
pir||C71059 hypothetical protein PH1169 - Pyrococcus horikoshii ...   155  5e-37

>pir||G75084 hypothetical protein PAB0711 - Pyrococcus abyssi (strain Orsay)
           >gi|5458492|emb|CAB49980.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 292
           
 Score =  545 bits (1388), Expect = e-154
 Identities = 292/292 (100%), Positives = 292/292 (100%)

Query: 1   MVAIKSFGSAINKVIENPKVIIFPLIVVLIFSVPLAFLEKESNIKPLNFEEAGVIIEKHG 60
           MVAIKSFGSAINKVIENPKVIIFPLIVVLIFSVPLAFLEKESNIKPLNFEEAGVIIEKHG
Sbjct: 1   MVAIKSFGSAINKVIENPKVIIFPLIVVLIFSVPLAFLEKESNIKPLNFEEAGVIIEKHG 60

Query: 61  AISDMKLPNLKLLLLVGLLQLLLLSAVQYSIIHYVKTGSTMGEAFLKGLENVIQMFLLNV 120
           AISDMKLPNLKLLLLVGLLQLLLLSAVQYSIIHYVKTGSTMGEAFLKGLENVIQMFLLNV
Sbjct: 61  AISDMKLPNLKLLLLVGLLQLLLLSAVQYSIIHYVKTGSTMGEAFLKGLENVIQMFLLNV 120

Query: 121 ISTLIVLVAFLIAIFPPMIIVGIGGILESTGAVIFGILLVILSGLIIGSFAIGMTSVIVP 180
           ISTLIVLVAFLIAIFPPMIIVGIGGILESTGAVIFGILLVILSGLIIGSFAIGMTSVIVP
Sbjct: 121 ISTLIVLVAFLIAIFPPMIIVGIGGILESTGAVIFGILLVILSGLIIGSFAIGMTSVIVP 180

Query: 181 AYFESNSLSKALGSMGLTFKRKLSTLGFGLLLLFSVFVFLLAIGIVTAIPLLLSRSLAAV 240
           AYFESNSLSKALGSMGLTFKRKLSTLGFGLLLLFSVFVFLLAIGIVTAIPLLLSRSLAAV
Sbjct: 181 AYFESNSLSKALGSMGLTFKRKLSTLGFGLLLLFSVFVFLLAIGIVTAIPLLLSRSLAAV 240

Query: 241 IVARILEAPFLALLHAFTTIASLMFYENLKEEVNLLNLQQSVITDVRADRRL 292
           IVARILEAPFLALLHAFTTIASLMFYENLKEEVNLLNLQQSVITDVRADRRL
Sbjct: 241 IVARILEAPFLALLHAFTTIASLMFYENLKEEVNLLNLQQSVITDVRADRRL 292


>pir||C71059 hypothetical protein PH1169 - Pyrococcus horikoshii
           >gi|3257586|dbj|BAA30269.1| (AP000005) 286aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 286
           
 Score =  155 bits (388), Expect = 5e-37
 Identities = 100/278 (35%), Positives = 161/278 (56%), Gaps = 17/278 (6%)

Query: 1   MVAIKSFGSAINKVIENPKVIIFPLIVVLIFSVPLAFLEKESNIKPLNFEEAGVIIEKHG 60
           M AIKSFG +I+ +I + K+II  +   LI  +   F+E  SNI+ +     G+I E+HG
Sbjct: 1   MGAIKSFGESIDLLIRHKKLIILTIFPALISGIATPFMENFSNIQSVE----GIIFERHG 56

Query: 61  -AISDMKLPNLKLLLLVGLLQLLLLSAVQYSIIHYVKT-------GSTMGEAFLKGLENV 112
            A+ ++   N KL  ++ L++LL+LSAV+Y I  ++           ++ +  L GL NV
Sbjct: 57  YALPEV---NWKLFTIITLVELLILSAVEYGITDFIIKVKRREIESESLKDIALYGLRNV 113

Query: 113 IQMFLLNVISTLIVLVAFLIAIFPPMIIVGIGGILESTGAVIFGILLVILSGLIIGSFAI 172
              FLL +I  L +    L+   P +II+ +   L  T  V   ++L+IL  L+I  F++
Sbjct: 114 GWAFLLMIIEFLYMGAIILVGSLPFIIILILASFL--TPLVPLAMILLILWILMIAPFSL 171

Query: 173 GMTSVIVPAYFESNSLSKALGSMGLTFKRKLSTLGFGLLLLFSVFVFLLAIGIVTAIPLL 232
            ++++I+P + ++ SL +A+  +    + K S  GFGLLL+ + FVFL+ IGI+     L
Sbjct: 172 AVSTLILPRFVDTRSLREAISVIKYGRRYKASMFGFGLLLILAGFVFLITIGIIEMSIYL 231

Query: 233 LSRSLAAVIVARILEAPFLALLHAFTTIASLMFYENLK 270
            S SL   ++A +L  PF+ALL  FTTIA  +FYEN++
Sbjct: 232 FSTSLLGRVLASLLTVPFMALLSLFTTIAGAVFYENIR 269


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.146    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86621241
Number of Sequences: 2977
Number of extensions: 3275585
Number of successful extensions: 16935
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16931
Number of HSP's gapped (non-prelim): 2
length of query: 292
length of database: 189,106,746
effective HSP length: 57
effective length of query: 235
effective length of database: 154,992,987
effective search space: 36423351945
effective search space used: 36423351945
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)