BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0713 (PAB0713) DE:Hypothetical protein
(371 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75085 hypothetical protein PAB0713 - Pyrococcus abyssi (st... 767 0.0
pir||F71058 probable radical-forming protein PH1164 - Pyrococcus... 683 0.0
sp|Q60332|Y021_METJA HYPOTHETICAL PROTEIN MJ0021 >gi|2128086|pir... 277 2e-73
gb|AAG20292.1| (AE005103) Vng2155c [Halobacterium sp. NRC-1] 226 3e-58
gb|AAK40444.1| Conserved hypothetical protein [Sulfolobus solfat... 213 3e-54
pir||S75404 probable radical-forming protein c04038 - Sulfolobus... 213 3e-54
pir||G72651 hypothetical protein APE0644 - Aeropyrum pernix (str... 212 4e-54
gi|11498816 conserved hypothetical protein [Archaeoglobus fulgid... 198 9e-50
>pir||A75085 hypothetical protein PAB0713 - Pyrococcus abyssi (strain Orsay)
>gi|5458494|emb|CAB49982.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 371
Score = 767 bits (1958), Expect = 0.0
Identities = 371/371 (100%), Positives = 371/371 (100%)
Query: 1 MIRGWLAEGIIMVQKTPYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWR 60
MIRGWLAEGIIMVQKTPYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWR
Sbjct: 1 MIRGWLAEGIIMVQKTPYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWR 60
Query: 61 RKDVVYANERPVRSEKDIIEEAKIQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFH 120
RKDVVYANERPVRSEKDIIEEAKIQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFH
Sbjct: 61 RKDVVYANERPVRSEKDIIEEAKIQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFH 120
Query: 121 IHLYTTGILASEEALEKLYDAGLDEIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGE 180
IHLYTTGILASEEALEKLYDAGLDEIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGE
Sbjct: 121 IHLYTTGILASEEALEKLYDAGLDEIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGE 180
Query: 181 VPAVPGFEDRIKWFASLLDKLGAKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSL 240
VPAVPGFEDRIKWFASLLDKLGAKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSL
Sbjct: 181 VPAVPGFEDRIKWFASLLDKLGAKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSL 240
Query: 241 EMGLKVLEWGEKNTSLNYHLCTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIA 300
EMGLKVLEWGEKNTSLNYHLCTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIA
Sbjct: 241 EMGLKVLEWGEKNTSLNYHLCTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIA 300
Query: 301 EYDDLEELYEFLVEEAEVPREWLYINWEKKRIEMPVEVAEELADAIEGDVKFYIVEEYPT 360
EYDDLEELYEFLVEEAEVPREWLYINWEKKRIEMPVEVAEELADAIEGDVKFYIVEEYPT
Sbjct: 301 EYDDLEELYEFLVEEAEVPREWLYINWEKKRIEMPVEVAEELADAIEGDVKFYIVEEYPT 360
Query: 361 WDRIEVERIPL 371
WDRIEVERIPL
Sbjct: 361 WDRIEVERIPL 371
>pir||F71058 probable radical-forming protein PH1164 - Pyrococcus horikoshii
>gi|3257581|dbj|BAA30264.1| (AP000005) 371aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 371
Score = 683 bits (1743), Expect = 0.0
Identities = 320/371 (86%), Positives = 350/371 (94%), Gaps = 1/371 (0%)
Query: 1 MIRGWLAEGIIMVQKTPYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWR 60
MI+GWLAEG IM +KTPYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLS WR
Sbjct: 1 MIKGWLAEGEIM-RKTPYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSSWR 59
Query: 61 RKDVVYANERPVRSEKDIIEEAKIQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFH 120
RKDV YANERP+ +DIIEEAKIQ+A+GAG+TGGDPLARL+RTV+YIR LKEEFG KFH
Sbjct: 60 RKDVAYANERPITKIEDIIEEAKIQEAKGAGVTGGDPLARLTRTVDYIRALKEEFGSKFH 119
Query: 121 IHLYTTGILASEEALEKLYDAGLDEIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGE 180
IHLYTTGILA ++AL LYDAGLDEIRFHPDLF+P+SKF REIEN+K AFDF WDVGGE
Sbjct: 120 IHLYTTGILADKKALSMLYDAGLDEIRFHPDLFEPSSKFLNREIENLKNAFDFNWDVGGE 179
Query: 181 VPAVPGFEDRIKWFASLLDKLGAKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSL 240
VPAVPGFEDRIKWFA +LDK G KFLNINELE+SETNLR LL+RGYKPVS+ESSAIKGSL
Sbjct: 180 VPAVPGFEDRIKWFAGILDKWGGKFLNINELEYSETNLRNLLNRGYKPVSNESSAIKGSL 239
Query: 241 EMGLKVLEWGEKNTSLNYHLCTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIA 300
E+GL++LEWGE+NTSLNYHLCTAKLKDAVQLRNRL+RMAKNVA+PYMEITEDGTLRFGIA
Sbjct: 240 ELGLRILEWGERNTSLNYHLCTAKLKDAVQLRNRLRRMAKNVAKPYMEITEDGTLRFGIA 299
Query: 301 EYDDLEELYEFLVEEAEVPREWLYINWEKKRIEMPVEVAEELADAIEGDVKFYIVEEYPT 360
EY+DLEELY+FL+EEAEVPREWLYINWEKKRIEMP+EVAEELA+ +EGDVKFYIVEEYPT
Sbjct: 300 EYEDLEELYKFLIEEAEVPREWLYINWEKKRIEMPIEVAEELAEVVEGDVKFYIVEEYPT 359
Query: 361 WDRIEVERIPL 371
WDRIEVERIPL
Sbjct: 360 WDRIEVERIPL 370
>sp|Q60332|Y021_METJA HYPOTHETICAL PROTEIN MJ0021 >gi|2128086|pir||E64302 probable
radical-forming protein MJ0021 - Methanococcus
jannaschii >gi|1498780|gb|AAB98003.1| (U67461) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 375
Score = 277 bits (700), Expect = 2e-73
Identities = 162/361 (44%), Positives = 228/361 (62%), Gaps = 26/361 (7%)
Query: 25 ELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWRR-KDVVYANERPVRSEKDIIEEAK 83
+LP+GC+ CV+G KLVLF+TG+C NC+YCPLS R+ KDV+YANER + + ++ IEEAK
Sbjct: 16 KLPEGCKQCVKGGKLVLFITGICNNNCYYCPLSEKRKNKDVIYANERLITTVEEAIEEAK 75
Query: 84 IQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFHIHLYTTGILASEEALEKLYDAGL 143
+ ++G GITGG+PL +++RTV++++ LK+EF +FH HLYTT +EE L+ L +A L
Sbjct: 76 LCSSKGVGITGGNPLLKINRTVKFLKALKKEF-DEFHAHLYTTPETVNEENLKLLKEADL 134
Query: 144 DEIRFHPDLF------QPNSKFFEREIENMKKAFDFGWDVGGEVPAVPGFEDRIKWFASL 197
DEIR HP + KF ++ K + DVG E+PA+P E+ I A
Sbjct: 135 DEIRLHPTKIFNEGYDEEYIKFLCNKLNLCNKYIE---DVGVEIPAIPNMENEILKLAEA 191
Query: 198 LDKLGAKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSLEMGLKVLEWGEKNTSLN 257
+D + AKF+NINELEFSE N L RG+ P D S+AI GS E LKV++ + + +N
Sbjct: 192 IDGI-AKFMNINELEFSEENYHELEKRGFMPKDDVSNAIAGSEETALKVIKEFKGDLFIN 250
Query: 258 YHLCTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIAEYDDLEELYEF--LVEE 315
Y C + LKDA+Q+RNRL AKNVA+PY ITEDG L GI +D+ ++L E ++EE
Sbjct: 251 Y--CPSVLKDAIQMRNRLINRAKNVAKPYEVITEDGLLLRGIMIFDNEDDLKEMAEILEE 308
Query: 316 AEVPREWLYINWEKKRIEMPVEVAEELADAIEGD-----VKFYIVEEYPTWDRIEVERIP 370
E+ E + K I + + E++ + ++ YI E YPT D +EVERIP
Sbjct: 309 NEIEFEII-----DKNICLNPFILEDIIEEMKRQRFPITFSAYISELYPTADALEVERIP 363
Query: 371 L 371
L
Sbjct: 364 L 364
>gb|AAG20292.1| (AE005103) Vng2155c [Halobacterium sp. NRC-1]
Length = 335
Score = 226 bits (570), Expect = 3e-58
Identities = 146/350 (41%), Positives = 194/350 (54%), Gaps = 25/350 (7%)
Query: 26 LPKGCQYCVRGEKLVLFVTGVCP-RNCFYCPLSPWRRKDV--VYANERPVRSEKDIIEEA 82
+ KGC+ C G K+VLFV G C R+CFYCPL RK+V VYANERPV ++DII EA
Sbjct: 6 ISKGCEQCAEGGKMVLFVYGYCDQRDCFYCPLGE-NRKNVQQVYANERPVEDDEDIISEA 64
Query: 83 KIQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFHIHLYTTGILASEEALEKLYDAG 142
K+ DA G ITGG+P L RT Y+RLLK+EFG+ H HLY TGI E + +L +AG
Sbjct: 65 KLMDALGTSITGGEPQEVLDRTCRYLRLLKDEFGEDHHTHLY-TGITGGRENMRRLSEAG 123
Query: 143 LDEIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGEVPAVPGFEDRIKWFASLLDKLG 202
LDEIRFHP E + A + G E+P + ++ F LD+
Sbjct: 124 LDEIRFHPPYELWGDMHGTEWEEILYIAREEGLTPAFEIPGIRAEDE----FLEFLDEGA 179
Query: 203 AKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSLEMGLKVLEWGEKNTSLNYHLCT 262
A F NINE E S+ N + + GY+ SA+ GS + L + E+ + CT
Sbjct: 180 ADFCNINEFEMSDGNYERMQEAGYELQEGHMSAVDGSKDAILSEMADHEQ-----VYFCT 234
Query: 263 AKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIAEYDDLEELYEFLVEEAEVPREW 322
+ KDA Q R+RLKRMA+NV R + EIT+DGTL +G + + E VP E
Sbjct: 235 SVFKDAAQHRSRLKRMARNVRREFDEITDDGTLVYG------KTTVGAGRIRELGVPEE- 287
Query: 323 LYINWEKKRIEMPVEVAEELADAIEGDV-KFYIVEEYPTWDRIEVERIPL 371
Y + +E+ + EE+ D +GD+ IVE+YPT+D VER PL
Sbjct: 288 -YYTVKSDHVEVAWWLLEEMID--DGDIDDGEIVEQYPTYDGQVVERTPL 334
>gb|AAK40444.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 350
Score = 213 bits (536), Expect = 3e-54
Identities = 128/351 (36%), Positives = 183/351 (51%), Gaps = 20/351 (5%)
Query: 17 PYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWR-RKDVVYANERPVRSE 75
P G+LPKGC+ C G KLVLF+TG C NC+YCP+S R K+ ++ANE V +
Sbjct: 7 PEIGLYTGKLPKGCELCRLGGKLVLFITGECDDNCYYCPVSDDRFGKNKIFANETEVNNS 66
Query: 76 KDIIEEAKIQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFHIHLYTTGILASEEAL 135
D+I EA A GAGITGGDP+ + R +E I LK EFG FHIHLYTTG +++ +
Sbjct: 67 MDVIYEAYRMKALGAGITGGDPILEIGRVIEIIEELKNEFGYDFHIHLYTTGRYVNDDIM 126
Query: 136 EKLYDAGLDEIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGEVPAVPGFEDRIKWFA 195
+L +AGLDE+RFHP E + +K A + D+G E+PA+P +D+I
Sbjct: 127 RELVNAGLDEMRFHP--------VKELYLNAVKVALKYDIDIGLELPAIPNEKDKIVRLI 178
Query: 196 SLLDKLGAKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSLEMGLKVLEWGEKNTS 255
++ KF+N+NELE + N L +G+ + ++GS E L VL+ E N
Sbjct: 179 KWAEENNVKFVNLNELELNSRNYLNLNSKGFH-AKHGITGVEGSFETALDVLKKFEDNKK 237
Query: 256 LNYHLCTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIAEYDDLEELYEFLVEE 315
+ H C++ KD V+ R R R+ K ++PY E T + T+ I + + E E
Sbjct: 238 ITVHYCSSIYKDLVETRTRFFRIIKYSSKPYEEYTNEATVVRAIVKTKGEIPILENFGES 297
Query: 316 AEVPREWLYINWEKKRIEMPVEVAEELADAIEGDVKFYIVEEYPTWDRIEV 366
+ P V + L D + YIVEE+P R+ V
Sbjct: 298 TGSDEYSI----------SPSIVGDLLNDYTNLINEIYIVEEHPDSRRLRV 338
>pir||S75404 probable radical-forming protein c04038 - Sulfolobus solfataricus
>gi|1707810|emb|CAA69567.1| (Y08257) ribosomal protein
S15 [Sulfolobus solfataricus]
Length = 350
Score = 213 bits (536), Expect = 3e-54
Identities = 128/351 (36%), Positives = 183/351 (51%), Gaps = 20/351 (5%)
Query: 17 PYYSYVVGELPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWR-RKDVVYANERPVRSE 75
P G+LPKGC+ C G KLVLF+TG C NC+YCP+S R K+ ++ANE V +
Sbjct: 7 PEIGLYTGKLPKGCELCRLGGKLVLFITGECDDNCYYCPVSDDRFGKNKIFANETEVNNS 66
Query: 76 KDIIEEAKIQDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFHIHLYTTGILASEEAL 135
D+I EA A GAGITGGDP+ + R +E I LK EFG FHIHLYTTG +++ +
Sbjct: 67 MDVIYEAYRMKALGAGITGGDPILEIGRVIEIIEELKNEFGYDFHIHLYTTGRYVNDDIM 126
Query: 136 EKLYDAGLDEIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGEVPAVPGFEDRIKWFA 195
+L +AGLDE+RFHP E + +K A + D+G E+PA+P +D+I
Sbjct: 127 RELVNAGLDEMRFHP--------VKELYLNAVKVALKYDIDIGLELPAIPNEKDKIVRLI 178
Query: 196 SLLDKLGAKFLNINELEFSETNLRALLDRGYKPVSDESSAIKGSLEMGLKVLEWGEKNTS 255
++ KF+N+NELE + N L +G+ + ++GS E L VL+ E N
Sbjct: 179 KWAEENNVKFVNLNELELNSRNYLNLNSKGFH-AKHGITGVEGSFETALDVLKKFEDNKK 237
Query: 256 LNYHLCTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIAEYDDLEELYEFLVEE 315
+ H C++ KD V+ R R R+ K ++PY E T + T+ I + + E E
Sbjct: 238 ITVHYCSSIYKDLVETRTRFFRIIKYSSKPYEEYTNEATVVRAIVKTKGEIPILENFGES 297
Query: 316 AEVPREWLYINWEKKRIEMPVEVAEELADAIEGDVKFYIVEEYPTWDRIEV 366
+ P V + L D + YIVEE+P R+ V
Sbjct: 298 TGSDEYSI----------SPSIVGDLLNDYTNLINEIYIVEEHPDSRRLRV 338
>pir||G72651 hypothetical protein APE0644 - Aeropyrum pernix (strain K1)
>gi|5104300|dbj|BAA79615.1| (AP000060) 366aa long
hypothetical protein [Aeropyrum pernix]
Length = 366
Score = 212 bits (535), Expect = 4e-54
Identities = 114/274 (41%), Positives = 157/274 (56%), Gaps = 8/274 (2%)
Query: 26 LPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWRR-KDVVYANERPVRSEKDIIEEAKI 84
+ +GC C G K V+FVTG+C +CFYCP+S + +DV Y NE PV S ++ + E
Sbjct: 40 MARGCDLCFPGRKAVVFVTGLCDDSCFYCPVSRAKLGRDVFYVNEVPVASVEEAVAEVLR 99
Query: 85 QDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFHIHLYTTGILASEEALEKLYDAGLD 144
A GA +TGGDPL L RT++ R LK E G+ FHIHLYT+G + E L++AG+D
Sbjct: 100 TGASGASLTGGDPLVALHRTLDVARALKSELGRGFHIHLYTSGRRMTPEVARALWEAGVD 159
Query: 145 EIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGEVPAVPGFEDRIKWFASLLDKLGAK 204
E+R HP S+ M K + G VG E+P PG E+ ++ +G
Sbjct: 160 EVRIHPTERSLLSRV------GMVKRYT-GMSVGVEMPIAPGLEELAIEAVKTVEAVGGD 212
Query: 205 FLNINELEFSETNLRALLDRGYKPVSDESSAIKGSLEMGLKVLEWGEKNTSLNYHLCTAK 264
F+N+NE+E E N RALL RGY + ++G+LE L+VLEW +N+S+ H C A
Sbjct: 213 FVNLNEMEIVEPNARALLARGYTESGERPFTVRGALEAVLRVLEWAAENSSVPVHFCPAS 272
Query: 265 LKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFG 298
KD++Q NRL+ A A Y E T GTL +G
Sbjct: 273 FKDSIQTGNRLRSSAARDAYWYEEPTPHGTLTWG 306
>gi|11498816 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7427864|pir||H69401 probable radical-forming protein
AF1217 - Archaeoglobus fulgidus
>gi|2649366|gb|AAB90028.1| (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 341
Score = 198 bits (498), Expect = 9e-50
Identities = 138/348 (39%), Positives = 201/348 (57%), Gaps = 39/348 (11%)
Query: 26 LPKGCQYCVRGEKLVLFVTGVCPRNCFYCPLSPWR-RKDVVYANERPVRSEKDIIEEAKI 84
LP+GC+ C +G KLVLFVTG+C +CFYCP+S + +DVV+ANERPV+S +D+ EE ++
Sbjct: 23 LPEGCRLCRKGAKLVLFVTGICNNSCFYCPVSKEKIGRDVVFANERPVKSVEDVFEEIEM 82
Query: 85 QDARGAGITGGDPLARLSRTVEYIRLLKEEFGKKFHIHLYTTGILASEEALEKLYDAGLD 144
DA G ITGG+PL ++ + EY++L K+ H+HLYT+ L + E L+KL GLD
Sbjct: 83 MDAEGIAITGGEPLLKIEKVREYLKLAKK---LDLHVHLYTS--LPAGEKLKKL--EGLD 135
Query: 145 EIRFHPDLFQPNSKFFEREIENMKKAFDFGWDVGGEVPAVPGFEDRIKWFASLLDKLGAK 204
EIRFHP P K E+ E+++ A G D G E+PA+ FE++I + D
Sbjct: 136 EIRFHP----PELKSPEKYEESIRLAKKLGMDAGFEIPAI-RFEEKIVEIVNRND----A 186
Query: 205 FLNINELEFSETNLRALLDRGYK----PVSDESSAIKGSLEMGLKVLEWGEKNTSLNYHL 260
FLN+N+LE SE+N + + Y VSDE + E +K E EK +H
Sbjct: 187 FLNVNQLEVSESNWERIAE-SYSITDYYVSDEET------ERIVKEYERAEK-----FHY 234
Query: 261 CTAKLKDAVQLRNRLKRMAKNVARPYMEITEDGTLRFGIAEYDDLEELYEFLVEEAEVPR 320
C+A+ KD Q R RL RMA N Y +T DGTL E D E L + EE
Sbjct: 235 CSARFKDIAQFRRRLIRMAMNHPEFY-AVTRDGTLVCTRVE-GDAERL--SIAEEILRKA 290
Query: 321 EWLYINWEKKRIEMPVEVAEELADAIEGD-VKFYIVEEYPTWDRIEVE 367
++ +E IE E+ +++ +A++ + ++ IVE YPT++R+ +E
Sbjct: 291 GQEFVRFE-DCIETTPELEKKIREALKSEGLRLRIVERYPTYNRLVLE 337
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143441347
Number of Sequences: 2977
Number of extensions: 6194775
Number of successful extensions: 14968
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14931
Number of HSP's gapped (non-prelim): 8
length of query: 371
length of database: 189,106,746
effective HSP length: 53
effective length of query: 318
effective length of database: 157,386,935
effective search space: 50049045330
effective search space used: 50049045330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)