BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0714 (PAB0714) DE:iron-dependent repressor
(163 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75085 iron-dependent repressor PAB0714 - Pyrococcus abyssi... 326 8e-89
pir||E71058 hypothetical protein PH1163 - Pyrococcus horikoshii ... 269 1e-71
gi|11499971 iron-dependent repressor [Archaeoglobus fulgidus] >g... 102 2e-21
sp|P54512|YQHN_BACSU HYPOTHETICAL 16.7 KD PROTEIN IN GCVT-SPOIII... 87 1e-16
sp|Q57988|Y568_METJA HYPOTHETICAL PROTEIN MJ0568 >gi|2128382|pir... 87 1e-16
pir||D72368 hypothetical protein TM0510 - Thermotoga maritima (s... 87 1e-16
dbj|BAB06526.1| (AP001516) transcriptional regulator [Bacillus h... 87 1e-16
gi|11499374 iron-dependent repressor [Archaeoglobus fulgidus] >g... 85 5e-16
pir||D69126 iron repressor - Methanobacterium thermoautotrophicu... 83 1e-15
pir||A64819 hypothetical protein b0817 - Escherichia coli >gi|17... 76 2e-13
pir||D69225 iron repressor - Methanobacterium thermoautotrophicu... 76 3e-13
gb|AAK40972.1| Iron-dependent repressor [Sulfolobus solfataricus] 74 8e-13
emb|CAB57634.1| (Y18930) diphtheria toxin repressor [Sulfolobus ... 74 8e-13
gb|AAF25184.1|AF182402_1 (AF182402) metalloregulator ScaR [Strep... 74 8e-13
gb|AAF81675.1|AF232688_4 (AF232688) SloR [Streptococcus mutans] 73 2e-12
pir||C72358 hypothetical protein TM0602 - Thermotoga maritima (s... 70 2e-11
gb|AAG19060.1| (AE005005) transcription repressor; SirR [Halobac... 69 3e-11
emb|CAA67572.1| (X99128) putative iron dependant repressor [Stap... 68 4e-11
pir||C75261 probable iron dependent repressor - Deinococcus radi... 68 8e-11
>pir||B75085 iron-dependent repressor PAB0714 - Pyrococcus abyssi (strain Orsay)
>gi|5458495|emb|CAB49983.1| (AJ248286) iron-dependent
repressor [Pyrococcus abyssi]
Length = 163
Score = 326 bits (827), Expect = 8e-89
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI
Sbjct: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
Query: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY
Sbjct: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
Query: 121 IQEHCPYVLKQFLKKVQEEDKKRSEDSGKVSEVTNEDQGEDVH 163
IQEHCPYVLKQFLKKVQEEDKKRSEDSGKVSEVTNEDQGEDVH
Sbjct: 121 IQEHCPYVLKQFLKKVQEEDKKRSEDSGKVSEVTNEDQGEDVH 163
>pir||E71058 hypothetical protein PH1163 - Pyrococcus horikoshii
>gi|3257580|dbj|BAA30263.1| (AP000005) 148aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 148
Score = 269 bits (680), Expect = 1e-71
Identities = 130/143 (90%), Positives = 141/143 (97%)
Query: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
MVSKREEEYLEVMYLLQKNKGVIRVKDIA++LKVKPPSVVDALKKLSKKGL+EYEK+DRI
Sbjct: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIAKILKVKPPSVVDALKKLSKKGLVEYEKHDRI 60
Query: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
TLTEEG++IAEETYSKH+LLTEFF NVLGIPPEIAEEDACQFEHYVSEVTV+RIREFI+Y
Sbjct: 61 TLTEEGRKIAEETYSKHILLTEFFTNVLGIPPEIAEEDACQFEHYVSEVTVKRIREFITY 120
Query: 121 IQEHCPYVLKQFLKKVQEEDKKR 143
IQE+CPYVLKQFLKKVQEEDK +
Sbjct: 121 IQENCPYVLKQFLKKVQEEDKNQ 143
>gi|11499971 iron-dependent repressor [Archaeoglobus fulgidus]
>gi|7430129|pir||D69549 iron-dependent repressor homolog
- Archaeoglobus fulgidus >gi|2650706|gb|AAB91276.1|
(AE001111) iron-dependent repressor [Archaeoglobus
fulgidus]
Length = 148
Score = 102 bits (253), Expect = 2e-21
Identities = 51/138 (36%), Positives = 87/138 (62%), Gaps = 2/138 (1%)
Query: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
M+ R E+YLE +Y L K KG +V +++ VL VKP +V + L+KLS+ G +EY+K +
Sbjct: 1 MLGSRAEDYLEAIYSLSKEKGYAKVMELSEVLNVKPATVSEMLEKLSRMGYVEYKKRSHV 60
Query: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
LTE+G R A + K ++ + F+ +G+P ++AE DAC EH + T++++R F+ +
Sbjct: 61 KLTEKGVREAMKLREKRNVVIK-FLKAIGVPEDVAERDACTIEHVLHPETLRQLRNFVRF 119
Query: 121 IQEHCPYVLKQFLKKVQE 138
+ E P V ++L+ +E
Sbjct: 120 V-ESSPAVNPRWLEHFRE 136
>sp|P54512|YQHN_BACSU HYPOTHETICAL 16.7 KD PROTEIN IN GCVT-SPOIIIAA INTERGENIC REGION
>gi|7430131|pir||E69959 transcription regulator homolog
yqhN - Bacillus subtilis >gi|1303895|dbj|BAA12551.1|
(D84432) YqhN [Bacillus subtilis]
>gi|2634886|emb|CAB14383.1| (Z99116) similar to
transcriptional regulator [Bacillus subtilis]
Length = 142
Score = 87.0 bits (212), Expect = 1e-16
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
M + E+Y+E +Y+L + KG RV DIA L V P SV ++KL K + YEKY +
Sbjct: 1 MTTPSMEDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGL 60
Query: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
LT +GK+I + +H LL + F+ ++G+ E D EH++S ++ RI + + Y
Sbjct: 61 VLTSKGKKIGKRLVYRHELLDQ-FLRIIGVDEEKIYNDVEGIEHHLSWNSIDRIGDLVQY 119
Query: 121 IQEHCPYVLKQFLKKVQEEDKKRSE 145
+E K+ LK +Q++ + ++
Sbjct: 120 FEE--DDARKKDLKSIQKKTEHHNQ 142
>sp|Q57988|Y568_METJA HYPOTHETICAL PROTEIN MJ0568 >gi|2128382|pir||H64370 hypothetical
protein MJ0568 - Methanococcus jannaschii
>gi|1592296|gb|AAB98562.1| (U67506) iron dependent
repressor [Methanococcus jannaschii]
Length = 125
Score = 87.0 bits (212), Expect = 1e-16
Identities = 43/123 (34%), Positives = 77/123 (61%), Gaps = 1/123 (0%)
Query: 2 VSKREEEYLEVMYL-LQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
+S+ E+YLE +YL +++N I+ ++A++L +KP +V + KKL + G + YE Y I
Sbjct: 1 MSQSIEDYLERIYLFIKENNRPIKTTELAKLLNIKPSAVTNMAKKLHRLGYVNYEPYIGI 60
Query: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
TLTE+G A++ KH + F V LG+ + A E+AC+ EH +S+ ++R++ F+
Sbjct: 61 TLTEKGIEEAKKILDKHKTIKIFLVEFLGLDEKTASEEACKLEHALSDEILERLKIFMEK 120
Query: 121 IQE 123
++
Sbjct: 121 FKD 123
>pir||D72368 hypothetical protein TM0510 - Thermotoga maritima (strain MSB8)
>gi|4981022|gb|AAD35595.1|AE001727_7 (AE001727)
iron-dependent transcriptional repressor, putative
[Thermotoga maritima]
Length = 172
Score = 87.0 bits (212), Expect = 1e-16
Identities = 56/161 (34%), Positives = 86/161 (52%), Gaps = 11/161 (6%)
Query: 7 EEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRITLTEEG 66
E+YL V+ + + + RV IAR + V PSV +A+K+L++ G +EYEKY ITLTE+G
Sbjct: 14 EDYLAVIQEILQKQPAARVSTIARKMGVSLPSVTNAMKRLAELGYVEYEKYGYITLTEKG 73
Query: 67 KRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYI---QE 123
KR A L FF V+GIP AE+ + F H++ T +R + F + E
Sbjct: 74 KRRARSLRGSQNRLRNFFFYVMGIPSPTAEKLSRHFSHFLDTKTRERFKRFYDIMVNFDE 133
Query: 124 HCPYVLKQFLKKVQEEDKKRSEDSGKVSE---VTNEDQGED 161
LK+FL E+ +R + ++ E + ED+ E+
Sbjct: 134 SKVQELKEFL-----EESRRLVNVREIPEEARIMEEDEEEE 169
>dbj|BAB06526.1| (AP001516) transcriptional regulator [Bacillus halodurans]
Length = 139
Score = 87.0 bits (212), Expect = 1e-16
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 7 EEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRITLTEEG 66
E+YLE +YLL + KG RV DIA L+V P SV ++KL K + YE+Y + LT +G
Sbjct: 7 EDYLERIYLLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSDYLVYERYRGLILTAKG 66
Query: 67 KRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYIQEHCP 126
K+I + +H LL E F+ ++G+ + ED EH++S + RI + + Y QE P
Sbjct: 67 KKIGKRLVYRHDLL-EDFLKMIGVDSDHIYEDVEGIEHHLSWDAIDRIGDLVQYFQED-P 124
Query: 127 YVLKQFLKKVQEEDKK 142
L L++VQ+++++
Sbjct: 125 SRLND-LREVQKKNEE 139
>gi|11499374 iron-dependent repressor [Archaeoglobus fulgidus]
>gi|7430127|pir||H69472 iron-dependent repressor homolog
- Archaeoglobus fulgidus >gi|2648760|gb|AAB89462.1|
(AE000979) iron-dependent repressor [Archaeoglobus
fulgidus]
Length = 191
Score = 84.7 bits (206), Expect = 5e-16
Identities = 45/131 (34%), Positives = 75/131 (56%), Gaps = 1/131 (0%)
Query: 4 KREEEYLEVMYLLQKNKG-VIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRITL 62
+R EEYLE +Y +Q+ V + ++A++L VKP SV + L KL G ++Y+ Y L
Sbjct: 2 ERIEEYLEAIYDIQEETSKVAKTGELAKILNVKPSSVTEMLIKLRDMGYVDYQPYKGAKL 61
Query: 63 TEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYIQ 122
T +G+ +A ++ L FF + LGI E+AE+ +C+ EH+++E R+ IS
Sbjct: 62 TRKGEELARRIKKYYLALYHFFKDYLGIQDELAEKLSCELEHHITEDAFVRVCRIISGNC 121
Query: 123 EHCPYVLKQFL 133
E C +++L
Sbjct: 122 EVCESCTQEYL 132
>pir||D69126 iron repressor - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621260|gb|AAB84720.1| (AE000808) iron
repressor [Methanobacterium thermoautotrophicum]
Length = 241
Score = 83.5 bits (203), Expect = 1e-15
Identities = 43/107 (40%), Positives = 59/107 (54%)
Query: 2 VSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRIT 61
+S+ EEYLE +Y L ++ + DI+R +K+ P SV LKKL G ++Y Y
Sbjct: 7 LSENIEEYLETIYRLSDSRKPVTTTDISREMKIAPASVTQMLKKLDSNGYVKYSPYRGAV 66
Query: 62 LTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSE 108
LT+ G RIA KH LL F +VLGI E AC+ EH +S+
Sbjct: 67 LTDRGYRIARRITRKHRLLERFLHDVLGIKRERIHRQACEMEHSLSD 113
>pir||A64819 hypothetical protein b0817 - Escherichia coli
>gi|1787038|gb|AAC73904.1| (AE000184) putative toxin
[Escherichia coli K12] >gi|4062379|dbj|BAA35488.1|
(D90718) Hypothetical 16.7 kd protein in gcvT-spoIIIAA
intergenic region. [Escherichia coli]
>gi|4062384|dbj|BAA35498.1| (D90719) Hypothetical 16.7
kd protein in gcvT-spoIIIAA intergenic region.
[Escherichia coli]
Length = 155
Score = 76.5 bits (185), Expect = 2e-13
Identities = 44/111 (39%), Positives = 68/111 (60%), Gaps = 1/111 (0%)
Query: 7 EEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRITLTEEG 66
++Y+E++ L + G R D+A L V P+V LK+L+ GLIE + + LT EG
Sbjct: 39 DDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEG 98
Query: 67 KRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREF 117
+++A+E+ +H ++ E F+ VLG+ PEIA DA EH+VSE T+ R F
Sbjct: 99 EKLAQESRERHQIV-ENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLF 148
>pir||D69225 iron repressor - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622034|gb|AAB85434.1| (AE000868) iron
repressor [Methanobacterium thermoautotrophicum]
Length = 140
Score = 75.7 bits (183), Expect = 3e-13
Identities = 40/126 (31%), Positives = 71/126 (55%), Gaps = 2/126 (1%)
Query: 2 VSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRIT 61
+++ E YLE +Y L + G+++ D++ + V+P SV LK+L + GL+ Y Y
Sbjct: 12 LTRSMENYLETLYRLSSH-GIVKTSDLSSRMNVRPASVTQMLKRLHEMGLVIYHPYLGAE 70
Query: 62 LTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYI 121
LT+EG+ IAE +H++L FF NVLG+ + + E+A + +H + T + ++
Sbjct: 71 LTDEGREIAEMVLRRHMILECFFHNVLGMDLDSSYEEASRMKHELFRETELALMRYLRN- 129
Query: 122 QEHCPY 127
CP+
Sbjct: 130 PARCPH 135
>gb|AAK40972.1| Iron-dependent repressor [Sulfolobus solfataricus]
Length = 212
Score = 74.1 bits (179), Expect = 8e-13
Identities = 42/126 (33%), Positives = 67/126 (52%), Gaps = 1/126 (0%)
Query: 2 VSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRIT 61
+S+ E YL+ MY +++ KG +V ++ + + P ++ AL KL K GL+E +I
Sbjct: 4 LSEPLENYLKEMYEIEEIKGSAKVSELISIFNISPGTISKALNKLEKLGLVERTNDRKIK 63
Query: 62 LTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYI 121
LTEEGKRIAE H L +++G+ A E A + EH + ++RI + Y
Sbjct: 64 LTEEGKRIAERLIKSHRLSERLLTDIVGVDWIRAHELAHRLEHIWPDDILERIDRLLGY- 122
Query: 122 QEHCPY 127
CP+
Sbjct: 123 PTTCPH 128
>emb|CAB57634.1| (Y18930) diphtheria toxin repressor [Sulfolobus solfataricus]
Length = 212
Score = 74.1 bits (179), Expect = 8e-13
Identities = 42/126 (33%), Positives = 67/126 (52%), Gaps = 1/126 (0%)
Query: 2 VSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRIT 61
+S+ E YL+ MY +++ KG +V ++ + + P ++ AL KL K GL+E +I
Sbjct: 4 LSEPLENYLKEMYEIEEIKGSAKVSELISIFNISPGTISKALNKLEKLGLVERTNDRKIK 63
Query: 62 LTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYI 121
LTEEGKRIAE H L +++G+ A E A + EH + ++RI + Y
Sbjct: 64 LTEEGKRIAERLIKSHRLSERLLTDIVGVDWIRAHELAHRLEHIWPDDILERIDRLLGY- 122
Query: 122 QEHCPY 127
CP+
Sbjct: 123 PTTCPH 128
>gb|AAF25184.1|AF182402_1 (AF182402) metalloregulator ScaR [Streptococcus gordonii]
Length = 215
Score = 74.1 bits (179), Expect = 8e-13
Identities = 41/126 (32%), Positives = 72/126 (56%), Gaps = 1/126 (0%)
Query: 2 VSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRIT 61
++ +E+YL+ +Y L I K+IA++++V PP+V + +KKL + L+ +K
Sbjct: 1 MTPNKEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYL 60
Query: 62 LTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYI 121
LT+ G ++ + Y KH L+ F V+ LG E E+A EH VS+ V+R+ + + Y
Sbjct: 61 LTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLEHTVSDHFVERLDQLLDY- 119
Query: 122 QEHCPY 127
+ CP+
Sbjct: 120 PKACPH 125
>gb|AAF81675.1|AF232688_4 (AF232688) SloR [Streptococcus mutans]
Length = 217
Score = 73.0 bits (176), Expect = 2e-12
Identities = 41/126 (32%), Positives = 72/126 (56%), Gaps = 1/126 (0%)
Query: 2 VSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRIT 61
++ +E+YL+++Y L + I K IA + V P+V + +KKL + L+ +K
Sbjct: 1 MTPNKEDYLKIIYELSERDEKISNKQIAEKMSVSAPAVSEMVKKLLLEDLVLKDKQAGYL 60
Query: 62 LTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISYI 121
LT++G+ +A Y KH L+ F +N L + E+A EH VS+V V+R+ +F++Y
Sbjct: 61 LTKKGQILASSLYRKHRLIEVFLMNHLNYTADEIHEEAEVLEHTVSDVFVERLDKFLNY- 119
Query: 122 QEHCPY 127
+ CP+
Sbjct: 120 PKVCPH 125
>pir||C72358 hypothetical protein TM0602 - Thermotoga maritima (strain MSB8)
>gi|4981121|gb|AAD35687.1|AE001734_14 (AE001734)
iron-dependent transcriptional repressor, putative
[Thermotoga maritima]
Length = 151
Score = 69.9 bits (168), Expect = 2e-11
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
M+S E+ YL + LL +G R+K ++ LKVK PS L+ L+ K LI Y + I
Sbjct: 1 MLSPTEKRYL-LAVLLTTEEGSTRLKRVSDFLKVKMPSAKQILEDLASKKLINYVRRGPI 59
Query: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
+LT++G +A++ + L EF +L + E AE+ A + + E R+ +F+++
Sbjct: 60 SLTKKGTELAQKELERFNNLKEFLKKILFLDEEEAEKGAWEIFFNLEESIADRVVDFMNF 119
Query: 121 IQEHCPYVLKQFLKKVQE 138
+ HCP++ +K +E
Sbjct: 120 L-THCPHITPICIKGFKE 136
>gb|AAG19060.1| (AE005005) transcription repressor; SirR [Halobacterium sp. NRC-1]
Length = 233
Score = 69.1 bits (166), Expect = 3e-11
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 1 MVSKREEEYLEVMYLLQK-NKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDR 59
M+S E+YL+ +Y L++ ++ I IA L V PP+V +KL +GLIE EKY
Sbjct: 9 MLSDVMEDYLKSIYNLEREHEPPIATSTIAEYLDVTPPTVTSMAEKLESRGLIEREKYAG 68
Query: 60 ITLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIRE 116
+ LT +G+ +A E H LL F L + ++A EH++SE R+ E
Sbjct: 69 VELTPDGETVAVEVIRHHRLLESFLATHLDYDWDEVHDEADALEHHISEEFEDRLAE 125
>emb|CAA67572.1| (X99128) putative iron dependant repressor [Staphylococcus
epidermidis]
Length = 214
Score = 68.3 bits (164), Expect = 4e-11
Identities = 35/127 (27%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 1 MVSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRI 60
M+++ +E+YL+ + + + K +++ L +KPPSV + + +L K+G +E + Y
Sbjct: 1 MLTEEKEDYLKAILTNDGDVSFVSNKKLSQFLNIKPPSVSEMVGRLEKEGYVETKHYKGA 60
Query: 61 TLTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFISY 120
LTEEG + + +H LL F + +L E ++A EH +S++ V+R+ + +++
Sbjct: 61 RLTEEGLKQTLDIIKRHRLLELFLIEILQYNWEEVHQEAEILEHRISDLFVERLDKILNF 120
Query: 121 IQEHCPY 127
+ CP+
Sbjct: 121 -PKTCPH 126
>pir||C75261 probable iron dependent repressor - Deinococcus radiodurans
(strain R1) >gi|6460364|gb|AAF12080.1|AE002083_4
(AE002083) iron dependent repressor, putative
[Deinococcus radiodurans]
Length = 232
Score = 67.5 bits (162), Expect = 8e-11
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 2 VSKREEEYLEVMYLLQKNKGVIRVKDIARVLKVKPPSVVDALKKLSKKGLIEYEKYDRIT 61
+S E+YL+ +Y L ++ G + + +A L V P SV L+KL+++GL+ + Y
Sbjct: 5 LSPSAEDYLKHLYGLGQS-GKVSTQALAAALGVAPASVTGMLRKLTEQGLVSHAPYQGAR 63
Query: 62 LTEEGKRIAEETYSKHVLLTEFFVNVLGIPPEIAEEDACQFEHYVSEVTVQRIREFI 118
LT EG+R+A E H LL F LG+P + ++A EH +SE RI ++
Sbjct: 64 LTAEGERVALEVLRHHRLLELFLHRALGVPLDEVHDEAEALEHALSERLEARIAAWL 120
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.134 0.363
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56693020
Number of Sequences: 2977
Number of extensions: 2145965
Number of successful extensions: 7623
Number of sequences better than 1.0e-10: 19
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7606
Number of HSP's gapped (non-prelim): 19
length of query: 163
length of database: 189,106,746
effective HSP length: 59
effective length of query: 104
effective length of database: 153,796,013
effective search space: 15994785352
effective search space used: 15994785352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 161 (67.1 bits)