BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0718 (iorA-2) DE:indolepyruvate ferredoxin oxidoreductase,
subunit alpha (iorA-2)
         (613 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75085 indolepyruvate ferredoxin oxidoreductase, chain alph...  1242  0.0
pir||D71055 probable indolepyruvate ferredoxin oxidoreductase al...  1167  0.0
pir||E75038 indolepyruvate ferredoxin oxidoreductase, chain alph...   535  e-151
sp|O58495|IORA_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA ...   527  e-148
sp|O07835|IORA_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA ...   526  e-148
gi|11499084 indolepyruvate ferredoxin oxidoreductase, subunit al...   497  e-139
gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha su...   477  e-133
sp|O27880|IORA_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA ...   450  e-125
emb|CAC12141.1| (AL445066) indolepyruvate ferredoxin oxidoreduct...   427  e-118
pir||H72214 hypothetical protein TM1759 - Thermotoga maritima (s...    92  1e-17
gi|11498080 2-ketoglutarate ferredoxin oxidoreductase, subunit a...    79  2e-13
pir||B72288 2-oxoacid ferredoxin oxidoreductase, alpha subunit -...    79  2e-13
sp|Q57724|KORA_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KET...    77  5e-13
pir||H69004 2-oxoglutarate--ferredoxin oxidoreductase (EC 1.2.7....    76  1e-12
sp|O27112|KORA_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KET...    76  1e-12
pir||A71047 probable ferredoxin oxidoreductase beta subunit - Py...    76  1e-12
pir||D75168 2-ketoglutarate ferredoxin oxidoreductase, chain bet...    75  2e-12
pir||S22396 pyruvate synthase (EC 1.2.7.1) alpha chain [validate...    74  5e-12
gb|AAG19514.1| (AE005043) putative 2-ketoglutarate ferredoxin ox...    74  5e-12
pir||F71046 probable ferredoxin oxidoreductase alpha subunit - P...    71  4e-11
pir||F75168 2-ketoglutarate ferredoxin oxidoreductase, chain alp...    71  4e-11

>pir||G75085 indolepyruvate ferredoxin oxidoreductase, chain alpha  (iora-2)
           PAB0718 - Pyrococcus abyssi (strain Orsay)
           >gi|5458500|emb|CAB49988.1| (AJ248286) indolepyruvate
           ferredoxin oxidoreductase, subunit alpha (iorA-2)
           [Pyrococcus abyssi]
           Length = 613
           
 Score = 1242 bits (3178), Expect = 0.0
 Identities = 613/613 (100%), Positives = 613/613 (100%)

Query: 1   MKRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEA 60
           MKRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEA
Sbjct: 1   MKRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEA 60

Query: 61  AGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYY 120
           AGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYY
Sbjct: 61  AGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYY 120

Query: 121 GKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVELNR 180
           GKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVELNR
Sbjct: 121 GKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVELNR 180

Query: 181 KPVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGAPY 240
           KPVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGAPY
Sbjct: 181 KPVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGAPY 240

Query: 241 NYVKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVAYE 300
           NYVKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVAYE
Sbjct: 241 NYVKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVAYE 300

Query: 301 EGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEAEEVSIPQEVLEAEKLAPKRPPG 360
           EGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEAEEVSIPQEVLEAEKLAPKRPPG
Sbjct: 301 EGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEAEEVSIPQEVLEAEKLAPKRPPG 360

Query: 361 MCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISL 420
           MCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISL
Sbjct: 361 MCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISL 420

Query: 421 ANGQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPGT 480
           ANGQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPGT
Sbjct: 421 ANGQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPGT 480

Query: 481 GGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGPAVIIAKRECV 540
           GGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGPAVIIAKRECV
Sbjct: 481 GGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGPAVIIAKRECV 540

Query: 541 IPVIRRGETREPPIIIEEKCTGCKACILLSGCQALIYDPETRKVKIDELICTGCGICNQL 600
           IPVIRRGETREPPIIIEEKCTGCKACILLSGCQALIYDPETRKVKIDELICTGCGICNQL
Sbjct: 541 IPVIRRGETREPPIIIEEKCTGCKACILLSGCQALIYDPETRKVKIDELICTGCGICNQL 600

Query: 601 CPFDAIKFREELE 613
           CPFDAIKFREELE
Sbjct: 601 CPFDAIKFREELE 613


>pir||D71055 probable indolepyruvate ferredoxin oxidoreductase alpha subunit -
           Pyrococcus horikoshii >gi|3257555|dbj|BAA30238.1|
           (AP000005) 618aa long hypothetical indolepyruvate
           ferredoxin oxidoreductase alpha subunit [Pyrococcus
           horikoshii]
           Length = 618
           
 Score = 1167 bits (2985), Expect = 0.0
 Identities = 561/613 (91%), Positives = 596/613 (96%)

Query: 1   MKRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEA 60
           +KRLLMGNEAIAYGALE+G++FATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEA
Sbjct: 6   VKRLLMGNEAIAYGALEAGVSFATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEA 65

Query: 61  AGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYY 120
           AG SYAG+RSLVTMKCVGLNVAADPLMSLAYSGVEGGLV+LVADDPGPHTSQTEQDDRYY
Sbjct: 66  AGASYAGIRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVVLVADDPGPHTSQTEQDDRYY 125

Query: 121 GKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVELNR 180
           GKI++LPVLEPYDPQEAHDLIKYAYELSEKYKVP+IFRTTTRVNHTTADVEVGEF +LNR
Sbjct: 126 GKISLLPVLEPYDPQEAHDLIKYAYELSEKYKVPIIFRTTTRVNHTTADVEVGEFKDLNR 185

Query: 181 KPVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGAPY 240
            P FKKDIERYVRASMEGNR+RHKWLNET++KIEEEFN++ +NW+EG+GK+GIIVEGAPY
Sbjct: 186 IPKFKKDIERYVRASMEGNRKRHKWLNETLKKIEEEFNNLDYNWIEGDGKIGIIVEGAPY 245

Query: 241 NYVKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVAYE 300
           NYVKE+LPSI  DFKILKLSTPHPLPRK+V++FLKSVEK +VIEEGAPFLEEEIKVVAYE
Sbjct: 246 NYVKEVLPSIEGDFKILKLSTPHPLPRKIVINFLKSVEKALVIEEGAPFLEEEIKVVAYE 305

Query: 301 EGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEAEEVSIPQEVLEAEKLAPKRPPG 360
           EGL VPIYGKRTG LPLEGELTPRLVKNAILK LGKE EEVS+P+EV EAE+LAPKRPP 
Sbjct: 306 EGLRVPIYGKRTGYLPLEGELTPRLVKNAILKLLGKEGEEVSLPKEVEEAERLAPKRPPV 365

Query: 361 MCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISL 420
           MCPGCPHRGSYRALLDALRELGYG+FDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISL
Sbjct: 366 MCPGCPHRGSYRALLDALRELGYGKFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISL 425

Query: 421 ANGQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPGT 480
           ANGQSVVM KKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPGT
Sbjct: 426 ANGQSVVMGKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPGT 485

Query: 481 GGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGPAVIIAKRECV 540
           GGSETGRKFREIDIEALV+ IGVKYVKTVDPYDLKATKEAIKEAM+VKGPAVIIA+RECV
Sbjct: 486 GGSETGRKFREIDIEALVKGIGVKYVKTVDPYDLKATKEAIKEAMKVKGPAVIIARRECV 545

Query: 541 IPVIRRGETREPPIIIEEKCTGCKACILLSGCQALIYDPETRKVKIDELICTGCGICNQL 600
           IPVIRRGETREPPI+IE+KCTGCKACILLSGC ALIYDPETRKV+IDELICTGCGICNQL
Sbjct: 546 IPVIRRGETREPPIVIEDKCTGCKACILLSGCPALIYDPETRKVRIDELICTGCGICNQL 605

Query: 601 CPFDAIKFREELE 613
           CPFDAIKFREEL+
Sbjct: 606 CPFDAIKFREELQ 618


>pir||E75038 indolepyruvate ferredoxin oxidoreductase, chain alpha  (iora-1)
           PAB0855 - Pyrococcus abyssi (strain Orsay)
           >gi|5458715|emb|CAB50202.1| (AJ248287) indolepyruvate
           ferredoxin oxidoreductase, subunit alpha (iorA-1)
           [Pyrococcus abyssi]
           Length = 648
           
 Score =  535 bits (1363), Expect = e-151
 Identities = 300/640 (46%), Positives = 404/640 (62%), Gaps = 45/640 (7%)

Query: 4   LLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARL--KPEVFAEWAPNEKVALEEAA 61
           LL+GN+AI  GALE  I     YPGTPS+E+ +T+A +  +  V+ E++ NEKVA E A 
Sbjct: 18  LLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAAVASRAGVYMEYSTNEKVAFETAL 77

Query: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYYG 121
             S+AGLR++  MK VGLNVA D  M+++Y GV GGLV++VADDP   +SQ EQD R   
Sbjct: 78  SASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGVNGGLVVVVADDPSMWSSQNEQDTRAIA 137

Query: 122 KIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVG----EFVE 177
           K A +PVLEP   QEA D++KYA+E+SEKY   VI RTTTR +H   DV +G    E  E
Sbjct: 138 KFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGELPQEIKE 197

Query: 178 LNRK-PVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEG--EGKLGII 234
             RK   FKK+ ERYV       R +HKWL ETI K  EEFN+ PFNW+EG  + K+GII
Sbjct: 198 GKRKFGDFKKNPERYVDIP-AFQRPKHKWLLETIEKFREEFNNSPFNWIEGPEDAKVGII 256

Query: 235 VEGAPYNYVKEILPSIGED-FKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEE 293
             G  Y YVKE L  +G D  K+LKL TP P+P  L+  F + +E+V+++EE  P +EE+
Sbjct: 257 APGLSYAYVKEALAWLGVDNVKVLKLGTPFPVPYGLLEKFFQGLERVLIVEELEPVVEEQ 316

Query: 294 IKVVAYEEGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEA--EEVSIPQEVLEAE 351
           +KV A+++G++V I+GK   L+P   E+T R    AI KFLG E       I ++  + +
Sbjct: 317 VKVWAFDKGINVEIHGK--DLVPRVYEMTTRRAVEAIAKFLGLETPINFEEIDEKYKKVQ 374

Query: 352 KLAPKRPPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTE 411
           ++ P RPP +CP CPHR ++     ALR+    R   P   DIGCY L +LPPL+ + T 
Sbjct: 375 EIVPPRPPSLCPACPHRNTF----FALRKAATPRAIYP--SDIGCYTLGVLPPLKTVDTT 428

Query: 412 FVMGASISLANGQSVVMN--------------KKIVATIGDSTFFHNGIQPLIDAVYKDL 457
             MG SI +A+G S+ +N              K I ATIGDSTFFH G+  L +A+Y   
Sbjct: 429 IAMGGSIGVAHGLSIALNGSIAEEQRKTGKGKKIIAATIGDSTFFHTGLPALANAIYNRS 488

Query: 458 DVLVIILDNRTTAMTGHQPHPGTGGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKAT 517
           +VL+++LDN  TAMTG QP+PGTG +  G   + I IE + +A+G  +V  VDPYD+K T
Sbjct: 489 NVLIVVLDNLVTAMTGDQPNPGTGETPHG-PGKRILIEEVAKAMGADFVAVVDPYDIKET 547

Query: 518 KEAIKEAMQVKGPAVIIAKRECVIPVIRRGETREP----PI--IIEEKCTGCKACILLSG 571
            E  K+A++V+G +V++A+R C +   R G+ R      PI  + E+KCTGCK CI   G
Sbjct: 548 YETFKKALEVEGVSVVVARRACAL--YRIGQLRRAGKQWPIYQVNEDKCTGCKICINAYG 605

Query: 572 CQALIYDPETRKVKIDELICTGCGICNQLCPFDAI-KFRE 610
           C A+ +DPE +K K+D L+C GCG C Q+CPFDA  K RE
Sbjct: 606 CPAIYWDPEKKKAKVDPLMCWGCGGCAQVCPFDAFEKVRE 645


>sp|O58495|IORA_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|7450338|pir||F71124 probable indolepyruvate
           ferredoxin oxidoreductase alpha subunit - Pyrococcus
           horikoshii >gi|3257173|dbj|BAA29856.1| (AP000003) 648aa
           long hypothetical indolepyruvate ferredoxin
           oxidoreductase alpha subunit [Pyrococcus horikoshii]
           Length = 648
           
 Score =  527 bits (1343), Expect = e-148
 Identities = 293/640 (45%), Positives = 403/640 (62%), Gaps = 41/640 (6%)

Query: 2   KRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARL--KPEVFAEWAPNEKVALEE 59
           K LL+GN+AI  GALE  I     YPGTPS+E+ +T+A +  K  V+ E++ NEKVA E 
Sbjct: 16  KVLLLGNQAIVRGALEGNIGVYAAYPGTPSSEITDTMAMVAKKAGVYMEYSTNEKVAFET 75

Query: 60  AAGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRY 119
           A   S+AGLR++  MK VGLNVA D  M+++Y G+ GGL+++VADDP   +SQ EQD R 
Sbjct: 76  ALSASWAGLRAMTAMKHVGLNVAMDSFMTVSYMGINGGLIVVVADDPSMWSSQNEQDTRA 135

Query: 120 YGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVG----EF 175
             K A +PVLEP   QEA D++KYA+E+SEKY   VI RTTTR +H   DV +G    E 
Sbjct: 136 IAKFANIPVLEPSSVQEAKDMVKYAFEISEKYGQMVILRTTTRSSHMRGDVVLGELPQEI 195

Query: 176 VELNRK-PVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEG--EGKLG 232
            E  RK   FKK+ E+YV       R +H WL ETI K  EEFN+ PFNW+EG  + K+G
Sbjct: 196 KEGKRKFGNFKKNPEKYVDIP-AFQRPKHPWLLETIEKFREEFNTSPFNWIEGPEDAKVG 254

Query: 233 IIVEGAPYNYVKEILPSIG-EDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLE 291
           II  G  Y YVKE L  +G ++ KILKL TP P+P  L+  F   +E+V+++EE  P +E
Sbjct: 255 IIAPGLSYAYVKEALAWLGIDNVKILKLGTPFPVPYGLLEKFFNGLERVLIVEELEPVVE 314

Query: 292 EEIKVVAYEEGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEA--EEVSIPQEVLE 349
           E++KV A++  +++ I+GK   L+P   E+T R    A+ KFLG E       I ++  +
Sbjct: 315 EQVKVWAFDNNINIEIHGK--DLVPRVYEMTTRRAVEAVAKFLGVETPINFQEIDEKYKK 372

Query: 350 AEKLAPKRPPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIW 409
            +++ P RPP +CP CPHR ++     A+R+    R   P   DIGCY L +LPPL+ + 
Sbjct: 373 VQEMVPPRPPSLCPACPHRNTF----FAIRKAATPRAIFP--SDIGCYTLGVLPPLKTVD 426

Query: 410 TEFVMGASISLANGQSVVMN--------------KKIVATIGDSTFFHNGIQPLIDAVYK 455
           T   MG SI +A+G S+ +N              K IVATIGDSTFFH G+  L +A+Y 
Sbjct: 427 TTIAMGGSIGVAHGLSIALNGALGEEQRKTGKEKKIIVATIGDSTFFHTGLPALANAIYN 486

Query: 456 DLDVLVIILDNRTTAMTGHQPHPGTGGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLK 515
             +VL++++DN  TAMTG QP+PGTG +  G   + I IE + RA+G  +V  VDPYD+K
Sbjct: 487 RSNVLIVVMDNMVTAMTGDQPNPGTGETPHG-PGKRILIEEVARAMGADFVAVVDPYDIK 545

Query: 516 ATKEAIKEAMQVKGPAVIIAKRECVIPVI--RRGETREPPI--IIEEKCTGCKACILLSG 571
            T E IK+A++V+G +V++++R C +  I   R E ++ PI  + EEKCTGCK CI   G
Sbjct: 546 ETYETIKKALEVEGVSVVVSRRACALYRIGQLRREGKQWPIYQVNEEKCTGCKICINAYG 605

Query: 572 CQALIYDPETRKVKIDELICTGCGICNQLCPFDAI-KFRE 610
           C A+ +D E +K ++D L+C GCG C Q+CPF A  K RE
Sbjct: 606 CPAIYWDAEKKKARVDPLMCWGCGGCAQVCPFGAFEKVRE 645


>sp|O07835|IORA_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|2209070|dbj|BAA20528.1| (D86221) indolepyruvate
           ferredoxin oxidoreductase alpha subunit [Pyrococcus sp.]
           Length = 647
           
 Score =  526 bits (1340), Expect = e-148
 Identities = 295/641 (46%), Positives = 398/641 (62%), Gaps = 42/641 (6%)

Query: 4   LLMGNEAIAYGALESGIAFATGYPGTPSTEVI---ETIARLKPEVFAEWAPNEKVALEEA 60
           LL+GN AI  GALE+ IA    YPGTPS+E+    +T+A+ K  V+ E++ NEKVA E A
Sbjct: 18  LLLGNHAIERGALEANIAVFAAYPGTPSSELTIRWQTVAK-KAGVYMEYSTNEKVAFETA 76

Query: 61  AGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYY 120
              +++GLR++  MK VGLNVAAD  +S    GVEGG VI+VADDP   +SQ EQD R Y
Sbjct: 77  LAAAWSGLRAMTAMKHVGLNVAADSFLSSVGMGVEGGFVIMVADDPSMWSSQNEQDTRVY 136

Query: 121 GKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVE--- 177
            K A +PVLEP  P EA ++ KYA+ELSEK+K  VI RTTTR +H   DV +GE  E   
Sbjct: 137 AKFANVPVLEPSSPHEAKEMTKYAFELSEKFKHFVILRTTTRSSHARGDVVLGELPEEIK 196

Query: 178 --LNRKPVFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEG--EGKLGI 233
               +   FKKD  R+V       R+ H  + E I KI EE N+ PFNW+EG  + K+GI
Sbjct: 197 TGKRKFGKFKKDPTRFVDVPAHA-RKFHPLILEKIEKIREELNNCPFNWIEGKEDAKVGI 255

Query: 234 IVEGAPYNYVKEILPSIG-EDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEE 292
           I  G  Y YVKE L  +G ED KILKL TP P+P  L+  F   +EKV+++EE    +EE
Sbjct: 256 IAPGLSYAYVKEALAWLGVEDVKILKLGTPFPVPYGLLGKFFDGLEKVLIVEELERVVEE 315

Query: 293 EIKVVAYEEGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEA--EEVSIPQEVLEA 350
           ++K  AY++GL +PI+GK   L+P   E+T R    AI KFLG E       I ++  + 
Sbjct: 316 QVKTWAYDKGLRIPIHGK--DLVPRVYEMTTRRAVEAIAKFLGLETPINFAEIDEKYEKV 373

Query: 351 EKLAPKRPPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWT 410
            ++ P RPP +CP CPHR S+     A+R+    +   P   DIGCY L +LPPL  + T
Sbjct: 374 SQIVPPRPPSLCPACPHRNSF----FAIRKAAGPKAIYP--SDIGCYTLGVLPPLRTVDT 427

Query: 411 EFVMGASISLANGQSVVMN--------------KKIVATIGDSTFFHNGIQPLIDAVYKD 456
              MGASI + +G S+ MN              + IVATIGDSTF+H G+  L +A+Y  
Sbjct: 428 TVAMGASIGIGHGLSIAMNGSLAEEEHKEGKEKQIIVATIGDSTFYHTGLPALANAIYNR 487

Query: 457 LDVLVIILDNRTTAMTGHQPHPGTGGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKA 516
            +VL+++LDN  TAMTG QP+PGTG +  G   + I IE + +A+G  +V  VDPYD+KA
Sbjct: 488 SNVLIVVLDNLVTAMTGDQPNPGTGQTPHGMG-KRIPIEDVAKAMGADFVAVVDPYDIKA 546

Query: 517 TKEAIKEAMQVKGPAVIIAKRECVIPVI----RRGETREPPIIIEEKCTGCKACILLSGC 572
           T E IK+A++V+G +V+++++ C +  I    RRG       ++E+KCTGCK CI   GC
Sbjct: 547 TYETIKKALEVEGVSVVVSRQVCALYKIGQMRRRGMKWPIYHVVEDKCTGCKICIKTYGC 606

Query: 573 QALIYDPETRKVKIDELICTGCGICNQLCPFDAIKFREELE 613
            A+ +DPET+K K+D  +C GCG C Q+CPFDA +  +E E
Sbjct: 607 PAIYWDPETKKAKVDPTMCWGCGGCAQVCPFDAFEPMKEGE 647


>gi|11499084 indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus]
           >gi|6685558|sp|O28783|IORA_ARCFU INDOLEPYRUVATE
           OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|7450334|pir||H69435 indolepyruvate ferredoxin
           oxidoreductase, subunit alpha  (iorA) homolog -
           Archaeoglobus fulgidus >gi|2649079|gb|AAB89760.1|
           (AE001000) indolepyruvate ferredoxin oxidoreductase,
           subunit alpha (iorA) [Archaeoglobus fulgidus]
           Length = 623
           
 Score =  497 bits (1267), Expect = e-139
 Identities = 274/622 (44%), Positives = 381/622 (61%), Gaps = 32/622 (5%)

Query: 2   KRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIA------RLKPEVFAEWAPNEKV 55
           K  L+GNEAIA GA+E+GI     YPGTPS+E+ +T++      R K + + E++ NEKV
Sbjct: 13  KVFLLGNEAIARGAIEAGIDVFAAYPGTPSSEIADTLSDACRLLRGKMDFYMEYSANEKV 72

Query: 56  ALEEAAGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQ 115
           A E A G S AG R++ TMK VG+NVAADPL S AY G  GG V++ ADDP  H+SQ EQ
Sbjct: 73  AFEVAVGASLAGKRAMATMKHVGVNVAADPLFSFAYVGARGGFVLVTADDPSMHSSQNEQ 132

Query: 116 DDRYYGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEF 175
           D+R+YGK A LPV+EP   QEA D  K  ++LSEK+ +P+I R+ TR++H +  VE+G+ 
Sbjct: 133 DNRWYGKAAKLPVVEPSSVQEAKDYAKLCFDLSEKFGLPMILRSYTRLSHASGVVELGKI 192

Query: 176 VELNRKPVFKKDIERYVRASM---EGNRRRHKWLNETIRKIEEEFNSMPFNWV-EGEGKL 231
            E   K   + + ER+    +      R+    L E + KIE  FNS   NWV EG+G +
Sbjct: 193 PE---KEFSRVEWERHPETDVVLPAHARKLKPILLEKLEKIERYFNSSEMNWVDEGDGDV 249

Query: 232 GIIVEGAPYNYVKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLE 291
           GII  G  Y Y KE L ++  +  +LKLS+ HPLP +L+ +F+  ++KVIV+EE  PF+E
Sbjct: 250 GIIACGLSYAYTKEALENLNLNLPVLKLSSMHPLPERLIENFVSQMKKVIVVEEVDPFVE 309

Query: 292 EEIKVVAYEEGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEAEEVSIPQEVLEAE 351
             ++ +   E     +YGK  G +P+  E     V+  I K LG +         V E++
Sbjct: 310 LHVRAMGLAE-----VYGKMNGYMPMNYEYNVGRVETGIAKALGIKPSR-DYEGIVAESQ 363

Query: 352 KLA---PKRPPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAI 408
           KLA   P RPP +CPGCPH  S+ A+   + ELG    D  +  DIGCY L +  PLE +
Sbjct: 364 KLAAKAPPRPPVLCPGCPHSASFYAIRRVVDELG----DAALPSDIGCYTLGINKPLEGV 419

Query: 409 WTEFVMGASISLANGQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRT 468
                MGAS+ ++NG + V+N KI+ATIGDSTF H GI PLI+AVY   D +++ILDN T
Sbjct: 420 DITICMGASVGVSNGLAHVLNNKIIATIGDSTFIHAGIPPLINAVYNHADFVLVILDNST 479

Query: 469 TAMTGHQPHPGTGGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVK 528
           T MTGHQPHPGTG    G   + + IE +VR  GV++V+ V+PY+++   + ++ A+   
Sbjct: 480 TGMTGHQPHPGTGFRGCGEAGKAVRIEDIVRGCGVEFVEVVNPYNVRKMVDVLRRALNHD 539

Query: 529 GPAVIIAKRECVIPVIRRGETREPPII---IEEKCTGCKACILLSGCQALIYDPETRKVK 585
           G AV+IA++ C I +  R   RE  I+   + E CT C  C+    C ALI+D E  KV 
Sbjct: 540 GVAVVIARQPCAI-LWSRARRREGKIVTYKVTEDCTLCMECVNTFACPALIFDGE--KVS 596

Query: 586 IDELICTGCGICNQLCPFDAIK 607
           ID+ +C GC +C ++CP  AIK
Sbjct: 597 IDQSLCVGCAVCAKICPNRAIK 618


>gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus]
           Length = 612
           
 Score =  477 bits (1215), Expect = e-133
 Identities = 269/617 (43%), Positives = 374/617 (60%), Gaps = 34/617 (5%)

Query: 2   KRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEAA 61
           KRL++GNEAIA+GAL +G++ A GYPGTPSTE+IET+ +   +++AEW+ NEKVA E A 
Sbjct: 8   KRLILGNEAIAFGALSAGVSVAAGYPGTPSTEIIETLMKFG-KIYAEWSTNEKVAFETAY 66

Query: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYYG 121
           G +  G  +L TMK VGLNVAADPL+S +Y+GVEG LVI+ ADDP   +SQ EQD+RYYG
Sbjct: 67  GAAINGAFALTTMKHVGLNVAADPLISSSYTGVEGALVIVSADDPSMWSSQNEQDNRYYG 126

Query: 122 KIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVELNRK 181
             A++PV+EPYDPQ AHDL   A++LS K K PVIFR+TTR+ H    VE    ++   +
Sbjct: 127 LHALIPVVEPYDPQSAHDLTIEAFKLSNKVKHPVIFRSTTRIGHIRGPVE----LKPPSR 182

Query: 182 PVFKKDI---ERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGA 238
           PV  K I   +RYV       R R + L     +IEEE   +    ++ + +  II  G 
Sbjct: 183 PVMGKVIKNPKRYVLVPENARRDRVEQLKRW-ERIEEEVEGLN-ELIDNDSENLIIASGI 240

Query: 239 PYNYVKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVA 298
            + YV + +  +     IL+L+TP P+P++L+L  + + ++V+++EEG P +E ++K + 
Sbjct: 241 SFGYVIDAIKELEIKANILRLTTPVPIPKRLILKAVSNSKRVLIVEEGEPIVEYQVKDLL 300

Query: 299 YEEGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEAEEVSIPQEVLEAEKLAPKRP 358
           Y++G+ V ++GK   L+   GE+T   V  A  KF G     + I  + LE  +  P RP
Sbjct: 301 YDQGVRVELHGK--DLVSRVGEMTLDKVYYAFSKFFG-----LDIVTDYLEVPQDIPPRP 353

Query: 359 PGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASI 418
           P +CPGCPHR S+  L  A+    +   +  I GDIGCY L LLPP +A  +   MG+SI
Sbjct: 354 PALCPGCPHRSSFIDLKKAITMASFKPNETFISGDIGCYTLGLLPPFDAQDSSTDMGSSI 413

Query: 419 SLANGQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHP 478
            +ANG         +A IGDSTFFH+GI  L +AVY    +LV++LDNR+TAMTG QP P
Sbjct: 414 GIANGVYRATGNIPIAVIGDSTFFHSGISALANAVYNQTPMLVLVLDNRSTAMTGQQPSP 473

Query: 479 GTGGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKAT----KEAIKEAMQVKGPAVII 534
                      +EIDI  + + +GVKYV+ VDP+D+ ++      A+K     K PAV+I
Sbjct: 474 S----------KEIDIGEVAKGLGVKYVRYVDPFDVNSSIRELSNALKWVKDNKQPAVVI 523

Query: 535 AKRECVIPVIRRGETREPP--IIIEEKCTGCKACILLSGCQALIYDPETRKVKIDELICT 592
           AKR C + V+   E    P  I+  EKCTGC  C     C A+I     +K +ID   C 
Sbjct: 524 AKRACALLVMDNVEESNLPKAIVDLEKCTGCSICYDYFTCPAII-PRNDKKAEIDNYTCI 582

Query: 593 GCGICNQLCPFDAIKFR 609
           GCG C  +CPF AI  +
Sbjct: 583 GCGACVPICPFKAISLK 599


>sp|O27880|IORA_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA (IOR) (INDOLEPYRUVATE
           FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|7450335|pir||G69114 indolepyruvate oxidoreductase,
           alpha subunit - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622988|gb|AAB86318.1| (AE000938)
           indolepyruvate oxidoreductase, alpha subunit 
           [Methanobacterium thermoautotrophicum]
           Length = 618
           
 Score =  450 bits (1146), Expect = e-125
 Identities = 255/615 (41%), Positives = 363/615 (58%), Gaps = 24/615 (3%)

Query: 2   KRLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARL--KPEVFAEWAPNEKVALEE 59
           K  L+GNEA    A+ESG+  A+ YPGTPS+E+   ++ +  +  ++ E++ NEKVALE 
Sbjct: 14  KLFLLGNEATVRAAIESGVGVASTYPGTPSSEIGNVLSGIAKRAGMYFEFSVNEKVALEV 73

Query: 60  AAGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRY 119
           AA  + +G+RS   MK VGLNVA+D  MS AY+GV  G+V+L ADDP   +SQ EQD+R+
Sbjct: 74  AAAAAASGVRSFTFMKHVGLNVASDSFMSTAYTGVRAGMVVLTADDPSMFSSQNEQDNRH 133

Query: 120 YGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVELN 179
           Y ++A LP+LEP DPQE  + + +A+ELSE Y +PV+ RTTTRV+H    VEVG  +   
Sbjct: 134 YARLACLPLLEPSDPQEVLEFMNHAFELSEDYGLPVLLRTTTRVSHMRGVVEVGSRMREP 193

Query: 180 RKPVFKKDIERYVRASMEGNRRRHKWLNET----IRKIEEEFNSMPFNWVEGEGKLGIIV 235
            +  F+KD ER+V           K +++     IR  E E N + FN    + +LG++ 
Sbjct: 194 SEGFFRKDPERFVPVPATARVMHRKLVDKMKELRIRADESELNRV-FNG-GSDSELGVVA 251

Query: 236 EGAPYNYVKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIK 295
            G  +NYV + L S+G +  +LKL   +P P  LV +FL  +++V+V+EE  P +E E+ 
Sbjct: 252 SGGAFNYVYDALESLGLELPVLKLGFTYPFPAGLVEEFLSGLKRVLVVEEVDPIMEREVL 311

Query: 296 VVAYEEGLSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEA--EEVSIPQEVLEAEKL 353
            VA    L + ++GK  G LP   E    +++ AI    G  +   E  +P         
Sbjct: 312 AVAGSARLDLDVHGKLDGTLPEIYEYNEDILRKAISGLTGAPSVERECDVPD-------- 363

Query: 354 APKRPPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFV 413
            P+RPP +CPGCPHR  Y A+  A  EL     +I    DIGCY L + PP  A      
Sbjct: 364 IPERPPSLCPGCPHRAVYYAVRRAADELELSGDEIIFPTDIGCYTLGIEPPYSAADYLLS 423

Query: 414 MGASISLANGQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTG 473
           MG+SI  + G S    ++IV+ IGDSTFFH GI PLI+AV+     ++++LDNRTTAMTG
Sbjct: 424 MGSSIGTSCGFSAATTQRIVSFIGDSTFFHAGIPPLINAVHNKQRFVLVVLDNRTTAMTG 483

Query: 474 HQPHPGTGGSETGRKFREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGPAVI 533
            QPHPG      G +  EI IE +VRA GV++V+TV+P ++K T E +K A++ +  AV+
Sbjct: 484 GQPHPGLPVDGMGDEAPEISIEEIVRASGVEFVETVNPMNIKRTSETVKRALEHESVAVV 543

Query: 534 IAKRECVIPVIRRGETREPPIIIE-EKCTGCKACILLSGCQALIYDPETRKVKIDELICT 592
           I+K  C   ++  G  R  P+ ++ EKC  C  CI    C A++      +V ID L C 
Sbjct: 544 ISKYPC---MLSSGAVRGRPMAVDGEKCDLCLECIRDLACPAMV--TREGEVFIDPLKCR 598

Query: 593 GCGICNQLCPFDAIK 607
           GC +C Q+CP  AIK
Sbjct: 599 GCSVCLQICPAGAIK 613


>emb|CAC12141.1| (AL445066) indolepyruvate ferredoxin oxidoreductase, alpha subunit
           related protein [Thermoplasma acidophilum]
           Length = 605
           
 Score =  427 bits (1086), Expect = e-118
 Identities = 240/614 (39%), Positives = 358/614 (58%), Gaps = 30/614 (4%)

Query: 3   RLLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEWAPNEKVALEEAAG 62
           + ++GNEAIA  A+ +G++ A GYPGTPSTE+IE + +  P+V+ EW+ NEK+A E A G
Sbjct: 6   KFMIGNEAIAAAAVHAGVSVAAGYPGTPSTEIIENVRKFGPDVYVEWSVNEKIAFETAYG 65

Query: 63  VSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDDRYYGK 122
            + +G   LV +K VGLNVA+DP+ S +Y+G+ G LVI+ ADD    +SQ EQD+R+YG 
Sbjct: 66  AAMSGGTGLVAVKHVGLNVASDPMFSSSYTGITGSLVIVSADDSSMWSSQNEQDNRFYGL 125

Query: 123 IAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVGEFVELNRKP 182
            A++PVLEPYD Q A+DL   A+E+S  +  PVI RTTTR+ H  ++V   +  E  R  
Sbjct: 126 HALIPVLEPYDVQSAYDLTLKAFEVSRLFHHPVILRTTTRIGHVRSNVIYEDHHEPLRGK 185

Query: 183 VFKKDIERYVRASMEGNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGAPYNY 242
           V  KD   YV A       R K L E  R+I +  +S+     +G G   II  G  Y+Y
Sbjct: 186 VI-KDPNTYVLAPENARSDRKKQL-ERWREISDYLSSLCSYEPDG-GDSIIITGGISYSY 242

Query: 243 VKEILPSIGEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVAYEEG 302
           +KE L   G    +L+L    P+P   +L+ +  + +V+V+EE  P +E ++  +    G
Sbjct: 243 LKEALEDAGIHTNVLRLDATVPIPESAILNHINGIRRVLVVEENDPVMEMQVADILLRNG 302

Query: 303 LSVPIYGKRTGLLPLEGELTPRLVKNAILKFLGKEAEEVSIPQEVLEAEKLAPKRPPGMC 362
            +V  +GK   L+P+EGE+T   +K  +  F G     +       + E L P RPP +C
Sbjct: 303 KAVEFHGK--DLIPIEGEMTFEKLKAGLFAFFG-----MKYSGSYFQDEPLTP-RPPALC 354

Query: 363 PGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGASISLAN 422
           PGCPHR S+  +   L  +     +    GDIGCY L  LPP     +   MG+S+ ++N
Sbjct: 355 PGCPHRSSFFDIKKGLSRVSMQ--NSFFSGDIGCYTLGALPPFREQDSATNMGSSLGISN 412

Query: 423 GQSVVMNKKIVATIGDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQPHPGTGG 482
           G     ++  VA IGDSTFFH+GI+ + +AVY +   ++++LDNR+TAMTG QP P T  
Sbjct: 413 GVFRSTDQVPVAVIGDSTFFHSGIEGVANAVYNNTAEIIVVLDNRSTAMTGQQPSPSTA- 471

Query: 483 SETGRKFREIDIEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQ----VKGPAVIIAKRE 538
                    IDI  + RA+G++YV+T DP+D+ A ++A+++A +       PAVIIAKR 
Sbjct: 472 ---------IDIGNVCRAMGIEYVETFDPFDVDAGEKAVQQAAEYVKKTLKPAVIIAKRA 522

Query: 539 CVIPVIRRGETREPPIIIE-EKCTGCKACILLSGCQALIYDPETRKVKIDELICTGCGIC 597
           C + V+ + ++  P   ++  +CTGC  C     C +++     +K  ID+  C GCG C
Sbjct: 523 CALEVLEKVDSETPKAYVDSNRCTGCTICYDFFTCPSIL-PLSNKKATIDD-SCIGCGAC 580

Query: 598 NQLCPFDAIKFREE 611
            ++CPF+AI  + E
Sbjct: 581 VEVCPFNAISVKGE 594


>pir||H72214 hypothetical protein TM1759 - Thermotoga maritima (strain MSB8)
           >gi|4982338|gb|AAD36824.1|AE001814_6 (AE001814)
           2-oxoisovalerate oxidoreductase, beta subunit, putative
           [Thermotoga maritima]
           Length = 356
           
 Score = 92.4 bits (226), Expect = 1e-17
 Identities = 85/345 (24%), Positives = 157/345 (44%), Gaps = 27/345 (7%)

Query: 1   MKRLLM-GNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEWAPNEK--VAL 57
           MK+L+M GNEAIA  A+ +G      YP TP +E+ E +AR  PEV   +   E     +
Sbjct: 4   MKKLMMKGNEAIAESAIRAGCRLYFAYPITPQSEIAEYMARRLPEVGGVFLQTESEIATV 63

Query: 58  EEAAGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQTEQDD 117
               G +  G R + +    G ++  + +  +A + +    V +V   PG    Q  Q D
Sbjct: 64  NMVYGAACTGKRVMTSTSSPGFSLMQEGISYIAGAELPCVFVDVVRGGPGLGNIQPSQGD 123

Query: 118 RY-------YGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADV 170
            +       +G   ++ VL P   QEA DL + A++L+++Y+ PV+      +      V
Sbjct: 124 YFQAVKGGGHGDYRLI-VLAPSTLQEAVDLTQLAFDLADRYRNPVLILADGMIGQMMEPV 182

Query: 171 EVGEFVELNRKP---------VFKKDIERYVRASME--GNRRRHKWLNETIRKIEEEFNS 219
           E+ E  +L+  P            ++  R    +++  G  + +K L E  R IE     
Sbjct: 183 ELPEMRDLSTLPDHSDWALRGARNREPHRIAAFNIDPVGLEKMNKRLQEKYRLIEASEQR 242

Query: 220 MPFNWVEGEGKLGIIVEGAPYNYVKEILPSIGED---FKILKLSTPHPLPRKLVLDFLKS 276
                V+G   L ++  G     +K ++ S+ E+     + +  T  P P++ + +  K 
Sbjct: 243 WEEYRVDGAEYL-MVGYGTMGRILKSVVDSLREEGIPAGLFRPVTLWPFPKRRLKELAKK 301

Query: 277 VEKVIVIEEGAPFLEEEIKVVAYEEGLSVPIYGKRTGLLPLEGEL 321
           V+ + V+E  +  + E+++ ++ E  + V  YG+  G++P   E+
Sbjct: 302 VQLIFVVEMSSGQMVEDVQ-ISVEGKVPVHFYGRMGGVVPTPEEI 345


>gi|11498080 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA)
           [Archaeoglobus fulgidus]
           >gi|6685587|sp|O29781|KORA_ARCFU 2-OXOGLUTARATE SYNTHASE
           SUBUNIT KORA (2-KETOGLUTARATE OXIDOREDUCTASE ALPHA
           CHAIN) (KOR) (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE
           ALPHA SUBUNIT) >gi|7433685|pir||E69308
           2-oxoglutarate--ferredoxin oxidoreductase (EC 1.2.7.-)
           alpha chain korA - Archaeoglobus fulgidus
           >gi|2650159|gb|AAB90768.1| (AE001072) 2-ketoglutarate
           ferredoxin oxidoreductase, subunit alpha (korA)
           [Archaeoglobus fulgidus]
           Length = 346
           
 Score = 78.8 bits (191), Expect = 2e-13
 Identities = 90/355 (25%), Positives = 147/355 (41%), Gaps = 50/355 (14%)

Query: 4   LLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPE---VFAEWAPNEKVALEEA 60
           L+ GNEA   GA+ +G  F  GYP TPS+E+   +A L P+   VF +   +E  ++   
Sbjct: 5   LIQGNEAAVRGAINAGCNFFAGYPITPSSEIAHGMAELLPKFGGVFIQ-MEDEIASISAV 63

Query: 61  AGVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGV-EGGLVILVADDPGPHT------SQT 113
            G S AG  ++      G ++  +    + Y+ + E  +VI      GP T      SQ 
Sbjct: 64  IGASMAGAVAMTATSGPGFSLMQE---GMGYAAITESPVVIFNVMRAGPSTGIPTAPSQG 120

Query: 114 EQDDRYYGKIAILP--VLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVE 171
           +     YG     P  VL P   ++ + L   A++++ ++  PVI  +   V H    V 
Sbjct: 121 DAMQARYGSHGDYPIVVLAPASVKDMYYLTVEAFKIAFRFSTPVIVLSDEIVGHMRESVA 180

Query: 172 VGEFVELNRKPVFKKDIERYVRASMEGNRRRHKWLNETIRKIE----EEFNSM------- 220
           +    E+       +  E+  +  ++G RR    L  T   +     EE+  +       
Sbjct: 181 LPPLGEI-------ESYEKRAKNLIDGRRRHRTGLVHTENGLPTTDLEEYEKLLRLLFAK 233

Query: 221 -----PFNWVEGEGKLGIIVEGAPYNYVK---EILPSIGEDFKILKLSTPHPLPRKLVLD 272
                P    EGE  +  +  G+ Y   K   ++L   G    ILKL +  P P   V  
Sbjct: 234 FDDFRPMVRFEGEEGVLFVAYGSSYRLAKSSAKLLAEKGVSAGILKLESLFPFPEDAVRR 293

Query: 273 FLKSVEKVIVIEEGAPFLEEEIKVVAYEEGLSVPIYGKRTGLLP------LEGEL 321
           + K  + V+V E  A  + +E++ V       V  +G    +LP      +EGEL
Sbjct: 294 YSKKADLVVVPEMNAGQVVKEVERVCCCRVKGVSYFGSL--ILPEKLVEIVEGEL 346


>pir||B72288 2-oxoacid ferredoxin oxidoreductase, alpha subunit - Thermotoga
           maritima (strain MSB8)
           >gi|4981713|gb|AAD36240.1|AE001773_9 (AE001773)
           2-oxoacid ferredoxin oxidoreductase, alpha subunit
           [Thermotoga maritima]
           Length = 558
           
 Score = 78.8 bits (191), Expect = 2e-13
 Identities = 106/381 (27%), Positives = 172/381 (44%), Gaps = 53/381 (13%)

Query: 4   LLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPE--VFAEWAPNEKVALEEAA 61
           LL G EA+  GA+  G  F + YP +PST V+  +A+ K +  +  E A +E  A+    
Sbjct: 194 LLNGAEAVGLGAIAGGCNFVSSYPMSPSTSVLVFLAQHKNDFGIVVEQAEDEIAAMNMII 253

Query: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHT---SQTEQDD- 117
           G  YAG R LVT    G  +  + L SLA   +E   VI +A  PGP T   ++TEQ D 
Sbjct: 254 GAWYAGARGLVTTSGGGFALMEEAL-SLA-GMIESPAVIHLAQRPGPATGLPTRTEQGDL 311

Query: 118 --RYYGKIAILP--VLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVG 173
               Y      P  +  P + +EA  L + A+ +++KY+VPV   T   +  +  ++   
Sbjct: 312 NLALYAGHGDFPRVIYAPGNVEEAFYLTQKAFNVADKYQVPVFVLTDQYLVDSYYNLPGF 371

Query: 174 EFVELNRKPVFKKDIERYVRASM--------------EGNRRRHKWLNETIRKIEEEFNS 219
           +  EL  +  F K    Y+R ++              EG  R     ++    I E+FN+
Sbjct: 372 DLNELKVEKHFIKTTRDYIRYAITEDGISPRGIPGYGEGLVRVDSDEHDEFGHITEDFNT 431

Query: 220 MPFNWVEGEGKLGIIVEGAPYNYVKEIL-PSI--GEDFKILKLSTPHPL-PRKLVLDFLK 275
                V    + G  ++       KEI+ P +   E++++L ++    L P K  ++ L 
Sbjct: 432 R-VRMVNKRLRKGETLK-------KEIVKPKLIGDENYRVLLVAWGSTLEPIKEAIEGLD 483

Query: 276 SV-----EKVIVIEEG-APFLEEEIKVVAYEEGLSVPIYGKRTG-LLPLEGELTPRLVKN 328
            V      +V  I+E  A + E+  KVVA E        G  TG    L  ++T   +K+
Sbjct: 484 GVALLHFSQVWPIDESVATYFEKAEKVVAVE--------GNATGQFANLIRQVTGFHIKD 535

Query: 329 AILKFLGKEAEEVSIPQEVLE 349
            ILK+ G +     + +++ E
Sbjct: 536 RILKYNGLQFSVEELKEKIAE 556


>sp|Q57724|KORA_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KETOGLUTARATE
           OXIDOREDUCTASE ALPHA CHAIN) (KOR)
           (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           >gi|2127893|pir||E64334 2-oxoacid--ferredoxin
           oxidoreductase (EC 1.2.7.-) alpha chain - Methanococcus
           jannaschii >gi|1592279|gb|AAB98264.1| (U67483)
           2-ketoglutarate ferredoxin oxidoreductase, subunit alpha
           (korA) [Methanococcus jannaschii]
           Length = 366
           
 Score = 77.3 bits (187), Expect = 5e-13
 Identities = 89/329 (27%), Positives = 143/329 (43%), Gaps = 59/329 (17%)

Query: 5   LMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEVFAEW--APNEKVALEEAAG 62
           + GN+A A GA+++G  F  GYP TPSTE+ E +AR  P+V   +    +E  ++    G
Sbjct: 6   MQGNQACAKGAIKAGCRFFAGYPITPSTEIAEAMARELPKVGGYYIQMEDEIGSIAAVIG 65

Query: 63  VSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQ---TEQDDRY 119
            S+ GL+++      G ++  + +   AY   E   V++     GP T Q     Q D  
Sbjct: 66  ASWGGLKAMTATSGPGFSLMQENI-GFAYM-TETPCVVVDIQRGGPSTGQPTMASQGDMM 123

Query: 120 ------YGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEVG 173
                 +G   ++  L P   QE +D    A+  +EKY++PV       V H    V + 
Sbjct: 124 QCRWGSHGDYEVI-ALAPSSVQEMYDFTIMAFNYAEKYRIPVFVMADEIVGHMREKVILH 182

Query: 174 EFVE-LNRK--------------------PVFKK-----------DIERYVRASMEGNRR 201
           + +E +NRK                    PVF +           D   Y   S E + +
Sbjct: 183 DNIEIINRKKPEEKPCKKPYPFDKLIPEMPVFGEGYNVHITGLTHDERGYPDVSPETHDK 242

Query: 202 RHKWLNETIRKIEEEFNSMPFNWVEGE---GKLGIIVEGAPYNYVKEILPSI---GEDFK 255
             + +   IRK ++E       W EGE    ++  +  G+P   VK  + ++   G D  
Sbjct: 243 LVRRIVNKIRKNKDEI----IKW-EGENLDAEIVFVCYGSPSRTVKHAVRNLREKGLDVG 297

Query: 256 ILKLSTPHPLPRKLVLDFLKSVEKVIVIE 284
            ++L T +P P  L L  LK+ +KV+V E
Sbjct: 298 YIRLITVYPFPDDL-LKKLKA-KKVVVPE 324


>pir||H69004 2-oxoglutarate--ferredoxin oxidoreductase (EC 1.2.7.-) alpha chain
           - Methanobacterium thermoautotrophicum (strain Delta H)
           >gi|2622136|gb|AAB85529.1| (AE000875) 2-oxoglutarate
           oxidoreductase, alpha subunit  [Methanobacterium
           thermoautotrophicum]
           Length = 378
           
 Score = 76.1 bits (184), Expect = 1e-12
 Identities = 100/380 (26%), Positives = 157/380 (41%), Gaps = 65/380 (17%)

Query: 5   LMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPE---VFAEWAPNEKVALEEAA 61
           + GN+A A GA+++G  F  GYP TPSTE+ E +A L P    VF +   +E  AL    
Sbjct: 9   IQGNDACARGAIKAGCRFFAGYPITPSTEIAEEMALLLPREGGVFVQ-MEDEIGALGAVI 67

Query: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQ---TEQDDR 118
           G  ++G+R +      G ++  + +   A +  E  LVI+      P T Q     Q D 
Sbjct: 68  GAVWSGVRGMTATSGPGFSLMQEHVGYAAMT--ETPLVIVNVQRGSPSTGQPTMASQSDM 125

Query: 119 Y------YGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEV 172
                  +G   I+  L P   QE  D    A+ L+E+Y+VPV+      V H    + +
Sbjct: 126 MQARWGSHGDYEII-ALSPSSVQECFDFTVRAFNLAEEYRVPVMVMGDEIVGHMREKITI 184

Query: 173 GEFVELNRK-----------------------PVF-----------KKDIERYVRAS-ME 197
            + V++ ++                       P F             D   Y  AS  E
Sbjct: 185 PDRVKIRKRRGPSVPPEEFLPFSAPEDGVPEMPAFGDGYRIPVTGLTHDEGGYPDASNPE 244

Query: 198 GNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGAPYNYVKEILPSIGED---F 254
           G+ R  K L + I +  +  + +     E +  + +I  GAP   V   +    ED    
Sbjct: 245 GHHRLVKRLCDKILRHRDRISDVQEELTE-DAYITVISYGAPSRSVATAVKMAREDGVRA 303

Query: 255 KILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVAYEEGLSVPIYGKRTGL 314
             LK++TP P P   V    +   K++V+E     +  E++ VA   G++         L
Sbjct: 304 GYLKINTPWPFPETEVRAAAERSGKLLVVEMNLGQMFYEVQRVA--AGMA------EVEL 355

Query: 315 LP-LEGEL-TPRLVKNAILK 332
           LP + GE+  P  + N ILK
Sbjct: 356 LPKIGGEIHRPEEILNMILK 375


>sp|O27112|KORA_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORA (2-KETOGLUTARATE
           OXIDOREDUCTASE ALPHA CHAIN) (KOR)
           (2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT)
           Length = 376
           
 Score = 76.1 bits (184), Expect = 1e-12
 Identities = 100/380 (26%), Positives = 157/380 (41%), Gaps = 65/380 (17%)

Query: 5   LMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPE---VFAEWAPNEKVALEEAA 61
           + GN+A A GA+++G  F  GYP TPSTE+ E +A L P    VF +   +E  AL    
Sbjct: 7   IQGNDACARGAIKAGCRFFAGYPITPSTEIAEEMALLLPREGGVFVQ-MEDEIGALGAVI 65

Query: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGPHTSQ---TEQDDR 118
           G  ++G+R +      G ++  + +   A +  E  LVI+      P T Q     Q D 
Sbjct: 66  GAVWSGVRGMTATSGPGFSLMQEHVGYAAMT--ETPLVIVNVQRGSPSTGQPTMASQSDM 123

Query: 119 Y------YGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEV 172
                  +G   I+  L P   QE  D    A+ L+E+Y+VPV+      V H    + +
Sbjct: 124 MQARWGSHGDYEII-ALSPSSVQECFDFTVRAFNLAEEYRVPVMVMGDEIVGHMREKITI 182

Query: 173 GEFVELNRK-----------------------PVF-----------KKDIERYVRAS-ME 197
            + V++ ++                       P F             D   Y  AS  E
Sbjct: 183 PDRVKIRKRRGPSVPPEEFLPFSAPEDGVPEMPAFGDGYRIPVTGLTHDEGGYPDASNPE 242

Query: 198 GNRRRHKWLNETIRKIEEEFNSMPFNWVEGEGKLGIIVEGAPYNYVKEILPSIGED---F 254
           G+ R  K L + I +  +  + +     E +  + +I  GAP   V   +    ED    
Sbjct: 243 GHHRLVKRLCDKILRHRDRISDVQEELTE-DAYITVISYGAPSRSVATAVKMAREDGVRA 301

Query: 255 KILKLSTPHPLPRKLVLDFLKSVEKVIVIEEGAPFLEEEIKVVAYEEGLSVPIYGKRTGL 314
             LK++TP P P   V    +   K++V+E     +  E++ VA   G++         L
Sbjct: 302 GYLKINTPWPFPETEVRAAAERSGKLLVVEMNLGQMFYEVQRVA--AGMA------EVEL 353

Query: 315 LP-LEGEL-TPRLVKNAILK 332
           LP + GE+  P  + N ILK
Sbjct: 354 LPKIGGEIHRPEEILNMILK 373


>pir||A71047 probable ferredoxin oxidoreductase beta subunit - Pyrococcus
           horikoshii >gi|3258094|dbj|BAA30777.1| (AP000006) 284aa
           long hypothetical ferredoxin oxidoreductase beta subunit
           [Pyrococcus horikoshii]
           Length = 284
           
 Score = 75.7 bits (183), Expect = 1e-12
 Identities = 59/202 (29%), Positives = 89/202 (43%), Gaps = 7/202 (3%)

Query: 358 PPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGAS 417
           P  +CPGC       A  +A+ +L     D+ +   IGC A    P   A       G +
Sbjct: 21  PTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRA 80

Query: 418 ISLANGQSVVMNKKIVATI-GDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQP 476
           I+ A G  V +  K V  I GD      G   LI A  +++D+ VI+++N    MTG Q 
Sbjct: 81  IAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNVDITVILVNNFIYGMTGGQV 140

Query: 477 HPGT--GGSETGRKFREID----IEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGP 530
            P T  G   T   +R I+    +   V A G  YV       +    E+IK+A+  KG 
Sbjct: 141 APTTPFGAITTTTPYRNIEHPLKVAETVAAAGASYVARWTTAHVYQLIESIKKALMTKGF 200

Query: 531 AVIIAKRECVIPVIRRGETREP 552
           +++    +C +   RR + +EP
Sbjct: 201 SLVEVISQCPVQFGRRNKMKEP 222


>pir||D75168 2-ketoglutarate ferredoxin oxidoreductase, chain beta  (korb-1)
           PAB0344 - Pyrococcus abyssi (strain Orsay)
           >gi|5457937|emb|CAB49427.1| (AJ248284) 2-ketoglutarate
           ferredoxin oxidoreductase, subunit beta (korB-1)
           [Pyrococcus abyssi]
           Length = 284
           
 Score = 74.9 bits (181), Expect = 2e-12
 Identities = 60/202 (29%), Positives = 87/202 (42%), Gaps = 7/202 (3%)

Query: 358 PPGMCPGCPHRGSYRALLDALRELGYGRFDIPIHGDIGCYALSLLPPLEAIWTEFVMGAS 417
           P  +CPGC       A  +A+ +L     D+ +   IGC A    P   A       G +
Sbjct: 21  PTALCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRA 80

Query: 418 ISLANGQSVVMNKKIVATI-GDSTFFHNGIQPLIDAVYKDLDVLVIILDNRTTAMTGHQP 476
           I+ A G  V +  K V  I GD      G   LI A  +++D+ VI+++N    MTG Q 
Sbjct: 81  IAFATGVKVGLPDKYVVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTGGQV 140

Query: 477 HPGT--GGSETGRKFREID----IEALVRAIGVKYVKTVDPYDLKATKEAIKEAMQVKGP 530
            P T  G   T   +R I+    I   V A G  YV       +    E+IK A+  KG 
Sbjct: 141 APTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITTKGF 200

Query: 531 AVIIAKRECVIPVIRRGETREP 552
           +++    +C +   RR   +EP
Sbjct: 201 SLVEVISQCPVQFGRRNRMKEP 222


>pir||S22396 pyruvate synthase (EC 1.2.7.1) alpha chain [validated] -
           Halobacterium salinarum >gi|43498|emb|CAA45825.1|
           (X64521) pyruvate synthase [Halobacterium halobium]
           Length = 628
           
 Score = 73.7 bits (178), Expect = 5e-12
 Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 24/188 (12%)

Query: 4   LLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEV--FAEWAPNEKVALEEAA 61
           L+ G+ AIAYGA+++G  F +GYP TP T+    + +L P++   +E   +E  A   A 
Sbjct: 222 LMSGSHAIAYGAIDAGCRFISGYPMTPWTDAFTIMTQLLPDMGGVSEQVEDEIAAAAMAV 281

Query: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGP------------- 108
           G S+AG +++      G  + ++PL  LA    E  LV+L A   GP             
Sbjct: 282 GASHAGAKAMSGSSGGGFALMSEPL-GLA-EMTETPLVLLEAQRAGPSTGMPTKPEQADL 339

Query: 109 -HTSQTEQDDRYYGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTT 167
            H   T Q D +  ++A      P DP+E ++  + A+E++  Y++PVI     +++   
Sbjct: 340 EHVLYTSQGDSH--RVA----FGPKDPKECYEQTRTAFEIAYDYQIPVILLYDQKLSGEY 393

Query: 168 ADVEVGEF 175
            +V+   F
Sbjct: 394 RNVDASFF 401


>gb|AAG19514.1| (AE005043) putative 2-ketoglutarate ferredoxin oxidoreductase
           (alpha); KorA [Halobacterium sp. NRC-1]
           Length = 640
           
 Score = 73.7 bits (178), Expect = 5e-12
 Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 24/188 (12%)

Query: 4   LLMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEV--FAEWAPNEKVALEEAA 61
           L+ G+ AIAYGA+++G  F +GYP TP T+    + +L P++   +E   +E  A   A 
Sbjct: 234 LMSGSHAIAYGAIDAGCRFISGYPMTPWTDAFTIMTQLLPDMGGVSEQVEDEIAAAAMAV 293

Query: 62  GVSYAGLRSLVTMKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGP------------- 108
           G S+AG +++      G  + ++PL  LA    E  LV+L A   GP             
Sbjct: 294 GASHAGAKAMSGSSGGGFALMSEPL-GLA-EMTETPLVLLEAQRAGPSTGMPTKPEQADL 351

Query: 109 -HTSQTEQDDRYYGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTT 167
            H   T Q D +  ++A      P DP+E ++  + A+E++  Y++PVI     +++   
Sbjct: 352 EHVLYTSQGDSH--RVA----FGPKDPKECYEQTRTAFEIAYDYQIPVILLYDQKLSGEY 405

Query: 168 ADVEVGEF 175
            +V+   F
Sbjct: 406 RNVDASFF 413


>pir||F71046 probable ferredoxin oxidoreductase alpha subunit - Pyrococcus
           horikoshii >gi|3258091|dbj|BAA30774.1| (AP000006) 385aa
           long hypothetical ferredoxin oxidoreductase alpha
           subunit [Pyrococcus horikoshii]
           Length = 385
           
 Score = 71.0 bits (171), Expect = 4e-11
 Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 60/334 (17%)

Query: 5   LMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEV--FAEWAPNEKVALEEAAG 62
           + G+EAIA  A+ +G  F  GYP TP++E+ E +A   P +        +E  ++    G
Sbjct: 13  IQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLIDGVVIQMEDEIGSIAAVIG 72

Query: 63  VSYAGLRSLVTMKCVGLNVAADPLMSLAYSGV-EGGLVILVADDPGPHTSQTEQDDRYYG 121
            S+AG++++      G ++  +   ++ Y+ + E  +V++     GP T Q     +  G
Sbjct: 73  ASWAGVKAMTATSGPGFSLMQE---NIGYAVMTETPIVVVNVQRGGPSTGQPTLPSQ--G 127

Query: 122 KIA----------ILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVE 171
            I            L VL P   QEA D    A+ L+EKY+ PVI  +   V H    V 
Sbjct: 128 DIMQSIWGTHGDHTLIVLSPSTVQEAFDFTIRAFNLAEKYRTPVILLSDAEVGHMRERVY 187

Query: 172 VGEFVEL---NRK-----------------------PVFKKDIERYVRASMEGNRRRHKW 205
           + E  E+   NRK                       P+F K    YV       + R + 
Sbjct: 188 IPEPDEIEIVNRKLPGSEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPRT 247

Query: 206 LNETI--RKIEEEFNSMPFNWVE---------GEGKLGIIVEG----APYNYVKEILPSI 250
           +   +  R I   F  +  N  +          + ++ I+  G    +    +KE L ++
Sbjct: 248 VEREVHERLIRRIFEKIEKNKKDIFDYEARELDDAEIAIVTTGIVARSALRAIKE-LRNL 306

Query: 251 GEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIE 284
           G    +LK++T  P   +L+    + VE++ V E
Sbjct: 307 GIKAGLLKINTIWPFDFELIEKVAEKVERIYVPE 340


>pir||F75168 2-ketoglutarate ferredoxin oxidoreductase, chain alpha  (kora-2)
           PAB0346 - Pyrococcus abyssi (strain Orsay)
           >gi|5457939|emb|CAB49429.1| (AJ248284) 2-ketoglutarate
           ferredoxin oxidoreductase, subunit alpha (korA-2)
           [Pyrococcus abyssi]
           Length = 385
           
 Score = 71.0 bits (171), Expect = 4e-11
 Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 60/334 (17%)

Query: 5   LMGNEAIAYGALESGIAFATGYPGTPSTEVIETIARLKPEV--FAEWAPNEKVALEEAAG 62
           + G+EAIA  A+ +G  F  GYP TP++E+ E +A   P V        +E  ++    G
Sbjct: 13  IQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAIIG 72

Query: 63  VSYAGLRSLVTMKCVGLNVAADPLMSLAYSGV-EGGLVILVADDPGPHTSQ---TEQDD- 117
            S+AG +++      G ++  +   ++ Y+ + E  +V++     GP T Q     Q D 
Sbjct: 73  ASWAGAKAMTATSGPGFSLMQE---NIGYAVMTETPIVVVDVQRGGPSTGQPTLPSQGDI 129

Query: 118 -----RYYGKIAILPVLEPYDPQEAHDLIKYAYELSEKYKVPVIFRTTTRVNHTTADVEV 172
                  +G  +++ VL P   QEA D    A+ L+EKY+ PVI  +   V H    V +
Sbjct: 130 MQSIWGTHGDHSLI-VLSPSTVQEAFDFTIRAFNLAEKYRTPVILLSDAEVGHMRERVYI 188

Query: 173 GEFVEL---NRK-----------------------PVFKKDIERYVRASMEGNRRRHKWL 206
            E  E+   NRK                       P+F +    YV       R R + +
Sbjct: 189 PEPDEIEIVNRKLPQNEEEAKLPFGDPHGDFVPPMPIFGRGYRTYVTGLTHDERGRPRTV 248

Query: 207 -----NETIRKIEEEFNSMPFNWVEGEGK-----------LGIIVEGAPYNYVKEILPSI 250
                   IR+I E+      +  + E +            GI+   A    +KE L  +
Sbjct: 249 EREVHERVIRRIVEKIERNKKDIFDYEARELDDAEVAIVTTGIVARSA-LRAIKE-LREL 306

Query: 251 GEDFKILKLSTPHPLPRKLVLDFLKSVEKVIVIE 284
           G    +LK++T  P   +L+      VE++ V E
Sbjct: 307 GIKAGLLKINTIWPFDFELIEKIAGKVERIYVPE 340


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241668487
Number of Sequences: 2977
Number of extensions: 10793046
Number of successful extensions: 27937
Number of sequences better than 1.0e-10: 21
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 27838
Number of HSP's gapped (non-prelim): 27
length of query: 613
length of database: 189,106,746
effective HSP length: 56
effective length of query: 557
effective length of database: 155,591,474
effective search space: 86664451018
effective search space used: 86664451018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)