BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0719 (PAB0719) DE:HYPOTHETICAL RNA METHYLTRANSFERASE
(405 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75085 probable RNA methyltransferase PAB0719 - Pyrococcus ... 831 0.0
pir||C71055 probable RNA methyltransferase - Pyrococcus horikosh... 696 0.0
pir||C75094 probable RNA methyltransferase PAB0760 - Pyrococcus ... 353 3e-96
pir||G71070 hypothetical protein PH1259 - Pyrococcus horikoshii ... 350 1e-95
dbj|BAB04406.1| (AP001509) RNA methyltransferase [Bacillus halod... 213 4e-54
pir||E69793 RNA methyltransferase homolog yefA - Bacillus subtil... 208 7e-53
pir||F69806 RNA methyltransferase homolog yfjO - Bacillus subtil... 208 9e-53
dbj|BAB04616.1| (AP001510) RNA methyltransferase [Bacillus halod... 206 5e-52
pir||E72298 hypothetical protein TM1094 - Thermotoga maritima (s... 190 2e-47
pir||S77558 hypothetical protein sll1967 - Synechocystis sp. (st... 190 3e-47
dbj|BAA20428.1| (AB004554) orf1; putative [Synechocystis sp.] 189 4e-47
pir||E70323 RNA methyltransferase (TrmA-family) - Aquifex aeolic... 165 1e-39
dbj|BAB12711.1| (AP002746) putative RNA methyltransferase [Oryza... 165 1e-39
dbj|BAB01724.1| (AB023045) RNA methyltransferase-like protein [A... 164 1e-39
pir||H71476 probable rRNA methyltransferse - Chlamydia trachomat... 132 9e-30
sp|P55137|Y742_CHLTR HYPOTHETICAL RNA METHYLTRANSFERASE CT742 (P... 132 9e-30
sp|Q9Z721|Y885_CHLPN HYPOTHETICAL RNA METHYLTRANSFERASE CPN0885 ... 125 9e-28
gb|AAF73721.1| (AE002256) RNA methyltransferase, TrmA family [Ch... 125 9e-28
pir||A82075 probable TrmA family RNA methyltransferase VC2452 [i... 125 1e-27
pir||E82569 RNA methyltransferase XF2358 [imported] - Xylella fa... 122 6e-27
sp|P55135|YGCA_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA-... 122 1e-26
pir||B83530 probable RNA methyltransferase PA0933 [imported] - P... 118 1e-25
sp|Q09833|YAD7_SCHPO HYPOTHETICAL 59.6 KD PROTEIN C4G8.07C IN CH... 117 2e-25
sp|P75817|YBJF_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN POTI-... 117 3e-25
pir||A82399 probable TrmA family RNA methyltransferase VCA0929 [... 113 3e-24
emb|CAC01942.1| (AJ250970) tRNA(m5U54)methyltransferase [Sacchar... 111 2e-23
gb|AAA91052.1| (M94254) pCTHom1 gene product [Chlamydia trachoma... 110 3e-23
pir||T34574 hypothetical protein SC10A5.06 SC10A5.06 - Streptomy... 108 1e-22
sp|P44083|YBJF_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0958 >... 107 3e-22
pir||T50920 hypothetical protein ygcA [imported] - Rubrivivax ge... 106 4e-22
gb|AAF49200.2| (AE003518) CG3808 gene product [Drosophila melano... 106 5e-22
sp|P44643|YGCA_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0333 >... 106 6e-22
gb|AAD21539.1| (AF088896) RNA methyltransferase [Zymomonas mobilis] 92 8e-18
sp|P55136|YGCA_VIBSS HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA ... 91 2e-17
emb|CAB95525.1| (AL359782) possible protein htf9c [Trypanosoma b... 87 3e-16
dbj|BAB15067.1| (AK025106) unnamed protein product [Homo sapiens] 86 6e-16
gi|6680315 HpaII tiny fragments locus 9c [Mus musculus] >gi|3183... 85 2e-15
pir||G81355 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) Cj0... 81 3e-14
gi|6322909 Endo-exonuclease; Rnc1p [Saccharomyces cerevisiae] >g... 80 6e-14
dbj|BAB14223.1| (AK022749) unnamed protein product [Homo sapiens] 79 1e-13
sp|P23003|TRMA_ECOLI TRNA (URACIL-5-)-METHYLTRANSFERASE (TRNA(M-... 75 2e-12
pir||B83057 tRNA (uracil-5-)-methyltransferase PA4720 [imported]... 70 5e-11
>pir||H75085 probable RNA methyltransferase PAB0719 - Pyrococcus abyssi (strain
Orsay) >gi|5458501|emb|CAB49989.1| (AJ248286)
hypothetical RNA METHYLTRANSFERASE [Pyrococcus abyssi]
Length = 405
Score = 831 bits (2123), Expect = 0.0
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MRGVIRKLNDDGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
MRGVIRKLNDDGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR
Sbjct: 1 MRGVIRKLNDDGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDGI 120
CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDGI
Sbjct: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDGI 120
Query: 121 GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG 180
GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG
Sbjct: 121 GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG 180
Query: 181 KFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEFIRERLDD 240
KFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEFIRERLDD
Sbjct: 181 KFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEFIRERLDD 240
Query: 241 VDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDS 300
VDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDS
Sbjct: 241 VDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDS 300
Query: 301 NEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPG 360
NEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPG
Sbjct: 301 NEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPG 360
Query: 361 VIVYVSCNPETFARDVKMLDYRIDEIVALDMFPHTPHVELVAKLV 405
VIVYVSCNPETFARDVKMLDYRIDEIVALDMFPHTPHVELVAKLV
Sbjct: 361 VIVYVSCNPETFARDVKMLDYRIDEIVALDMFPHTPHVELVAKLV 405
>pir||C71055 probable RNA methyltransferase - Pyrococcus horikoshii
>gi|3257554|dbj|BAA30237.1| (AP000005) 407aa long
hypothetical RNA methyltransferase [Pyrococcus
horikoshii]
Length = 407
Score = 696 bits (1777), Expect = 0.0
Identities = 321/406 (79%), Positives = 375/406 (92%), Gaps = 1/406 (0%)
Query: 1 MRGVIRKLNDDGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
MRGV+++LNDDGFGVL +LVPFSAPGDE+ + ++E+VKK ++AS+WKL++SSPLRVG R
Sbjct: 1 MRGVVKELNDDGFGVLGNVLVPFSAPGDEVEILKIEKVKKAKIASKWKLIKSSPLRVGAR 60
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDGI 120
CK FG+CGGC+LQHL+YDYQLEFK ++++R+LG +VEV+PSP+IFGHRNRIDLA+T +GI
Sbjct: 61 CKVFGRCGGCSLQHLSYDYQLEFKGERIRRLLGVDVEVIPSPRIFGHRNRIDLAVTVEGI 120
Query: 121 GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG 180
GFRERGKWWKIVDI ECPVFGKTSR+AIERL+EFIEEE+ISVWN+KKDEGFLRYMVLREG
Sbjct: 121 GFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVWNVKKDEGFLRYMVLREG 180
Query: 181 KFTEEVMVNFVTKEGNLPDPTNYFDF-DSIYWSVNRSKSDVSYGDIERFWGKEFIRERLD 239
KFT EVMVN VTKEG LPDP+ YFDF SIYWSVNR+KSDVSYG++E WG+EFI E+LD
Sbjct: 181 KFTGEVMVNLVTKEGKLPDPSKYFDFATSIYWSVNRTKSDVSYGEVESVWGREFITEKLD 240
Query: 240 DVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFD 299
DV YLIHPNSFFQTNSYQAVNLV+KVSELVEGE++LDMYSGVGTFGIYLAKRGF V GFD
Sbjct: 241 DVIYLIHPNSFFQTNSYQAVNLVKKVSELVEGERVLDMYSGVGTFGIYLAKRGFKVVGFD 300
Query: 300 SNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKP 359
SNEFAIEMAR+N +IN VDA F+VA+DREV V GFDTVIVDPPR GLHP+L+K+LNREKP
Sbjct: 301 SNEFAIEMARKNAKINKVDAVFDVATDREVEVNGFDTVIVDPPRVGLHPKLIKKLNREKP 360
Query: 360 GVIVYVSCNPETFARDVKMLDYRIDEIVALDMFPHTPHVELVAKLV 405
VIVYVSCNP+TFARD++ L+Y+IDEIVALDMFPHTPH+ELVAKL+
Sbjct: 361 EVIVYVSCNPKTFARDIEKLEYKIDEIVALDMFPHTPHLELVAKLI 406
>pir||C75094 probable RNA methyltransferase PAB0760 - Pyrococcus abyssi (strain
Orsay) >gi|5458568|emb|CAB50056.1| (AJ248286)
hypothetical RNA METHYLTRANSFERASE [Pyrococcus abyssi]
Length = 410
Score = 353 bits (895), Expect = 3e-96
Identities = 181/410 (44%), Positives = 258/410 (62%), Gaps = 9/410 (2%)
Query: 1 MRGVIRKLNDDGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
MRG+I+ +++DG GVL +LVPF+ PGD + V R +A +KLV+SSP+RV +
Sbjct: 1 MRGIIKGVSNDGLGVLGEVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPIRVPGK 60
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDGI 120
C+ FG+CGGC Q L Y QL+ K + KR+ G E E+ SP+I+ RN + +T +GI
Sbjct: 61 CRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGI 120
Query: 121 GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG 180
GF+E G +V +DECPVF + ++ I +K F+ E ++ WN K G + Y+ +REG
Sbjct: 121 GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKN--GDVHYLQVREG 178
Query: 181 KFTEEVMVNFVTK--EGNLPDPTNYFDF-DSIYWSVNRSKSDVSYGDIERFWGKEFIRER 237
KFT EVM+N + + T F F DS+YWS+ R K D G G EFIRE
Sbjct: 179 KFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRES 238
Query: 238 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKG 297
++ + YLIHP++FFQTNSY L++ V EG K+LD+YSGVGTF +YLAK+GF V G
Sbjct: 239 IEGLVYLIHPSTFFQTNSYALPILLKAVESFAEGSKVLDLYSGVGTFSLYLAKKGFEVTG 298
Query: 298 FDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNRE 357
+ NE ++ +A+++ E+N++D F + +KG++T+IVDPPR GL KR+ +E
Sbjct: 299 VEVNEESVRVAKKSAEVNSLDVSFIPGRAEDAKLKGYETLIVDPPRKGLKD-FSKRIAKE 357
Query: 358 KPGVIVYVSCNPETFARDVK---MLDYRIDEIVALDMFPHTPHVELVAKL 404
P ++YVSCNP F D + Y+I++ V +DMFPHTPHVE V KL
Sbjct: 358 GPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKL 407
>pir||G71070 hypothetical protein PH1259 - Pyrococcus horikoshii
>gi|3257678|dbj|BAA30361.1| (AP000005) 412aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 412
Score = 350 bits (889), Expect = 1e-95
Identities = 183/416 (43%), Positives = 259/416 (61%), Gaps = 19/416 (4%)
Query: 1 MRGVIRKLNDDGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
MRG I K+N++G GVL ILVPF+ PGDE+ V + +A +KL+ SPLR+ +
Sbjct: 3 MRGKITKINENGLGVLGNILVPFAYPGDEVEVTETRERFGKIIARDFKLMTPSPLRIPGK 62
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDGI 120
C FGKCGGC Q L Y QL+ K + KRI G E E+ SP+I+ RN + IT +GI
Sbjct: 63 CSHFGKCGGCLWQGLRYREQLKLKEEIFKRITGIEAEIKGSPRIWYFRNISNFIITVNGI 122
Query: 121 GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG 180
GF+E G +V+I ECP+F + + + ++ LK+F+ E + WN + EG + Y+ +REG
Sbjct: 123 GFKEFGMPKTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWNWR--EGDVHYLQVREG 180
Query: 181 KFTEEVMVNFVTKEGNLPDPTNY-------FDF-DSIYWSVNRSKSDVSYGDIERFWGKE 232
KFT EVMVN + P NY F+F DSIYWS+ K D G G E
Sbjct: 181 KFTGEVMVNIIAHV-----PLNYREALMEAFNFADSIYWSLKADKKDDPRGFPTLVLGNE 235
Query: 233 FIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRG 292
IRE+++ + YLIHP+ FFQTNSY L++ V + EG K+LD+YSG+GT +YLAKRG
Sbjct: 236 VIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCEGSKVLDLYSGIGTLSLYLAKRG 295
Query: 293 FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVK 352
F V G + N ++EMA+R+ EIN+++A F + ++G++T+IVDPPR GL +
Sbjct: 296 FEVTGVEVNGTSVEMAKRSAEINSINATFIQGKAEDAELEGYETLIVDPPRKGL-KEFSR 354
Query: 353 RLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDMFPHTPHVELVAKLV 405
R+ ++ P ++YVSCNP F D + Y++D+ + +DMFPHTPH+E V KLV
Sbjct: 355 RIVKKGPNTLIYVSCNPLRFILDYRNYLSEAYKVDDALLIDMFPHTPHIEAVIKLV 410
>dbj|BAB04406.1| (AP001509) RNA methyltransferase [Bacillus halodurans]
Length = 458
Score = 213 bits (536), Expect = 4e-54
Identities = 140/439 (31%), Positives = 227/439 (50%), Gaps = 41/439 (9%)
Query: 5 IRKLNDDGFGVLK----GILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
I L DG GV K + +P + PG+ + + V+ K ++ +SP RV
Sbjct: 18 IEDLTHDGAGVAKVDGYALFIPKALPGERLKAKVVKVKKGYGFGRVLNMIEASPDRVEAP 77
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRIL---GFEVEVVPSPKI-----FGHRNRID 112
C F +CGGC LQH++YD QL +K+K+++ +L G V P I + +RN+
Sbjct: 78 CPVFNQCGGCQLQHMSYDAQLRYKQKQVQDVLERIGKITAVTVRPTIGMNEPWRYRNKAQ 137
Query: 113 LAITKDGIG-----FRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKK 167
+ + + G ++ER +I+D+DEC + + + + I ++KE E I ++ +K
Sbjct: 138 VPVGEREGGLIAGFYQERSH--RIIDMDECMIQHEENDKVIRQVKELARELGIRGYDEEK 195
Query: 168 DEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFD--------FDSIYWSVNRSKSD 219
G LR++V R GK T E+MV +T+ LP + SI +VN +++
Sbjct: 196 HRGTLRHVVARYGKNTGEIMVVLITRGEELPHKKTLIERIHKAIPHVKSIVQNVNPKRTN 255
Query: 220 VSYGDIER-FWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE---LVEGEKIL 275
V +GD + WG+E+I + + D+ + I SF+Q N Q L + E L E ++
Sbjct: 256 VIFGDKTKVLWGEEYIYDTIGDIKFAISARSFYQVNPEQTKVLYDQALEFANLTGSETVI 315
Query: 276 DMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINN-VDAEFEVASDREVSVKGF 334
D Y G+GT ++LA++ +V G + AI A+RN +N + +F V +V +
Sbjct: 316 DAYCGIGTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFAVGDAEKVMPWWY 375
Query: 335 ------DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD---YRIDE 385
D ++VDPPR G L+K + KP +VYVSCNP T ARD+++L+ Y +
Sbjct: 376 AQGVRADVIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNPATLARDLRVLEDGGYETKD 435
Query: 386 IVALDMFPHTPHVELVAKL 404
+ +DMFP T H+E VA L
Sbjct: 436 VQPVDMFPWTTHIESVAVL 454
>pir||E69793 RNA methyltransferase homolog yefA - Bacillus subtilis
>gi|2632987|emb|CAB12493.1| (Z99107) alternate gene
name: yerS~similar to RNA methyltransferase [Bacillus
subtilis]
Length = 459
Score = 208 bits (525), Expect = 7e-53
Identities = 142/433 (32%), Positives = 231/433 (52%), Gaps = 43/433 (9%)
Query: 8 LNDDGFGVLK----GILVPFSAPGDEIIVERVERVKKRRVASQW-KLVRSSPLRVGPRCK 62
L +G GV K I VP + P ++ + +V RVKK + +L SP R C
Sbjct: 20 LTHEGAGVAKVQGFPIFVPNALPEEKAQI-KVTRVKKGFAFGRLIELKEESPHRTDAPCP 78
Query: 63 AFGKCGGCTLQHLNYDYQLEFKRKKLKRILG-------FEVEVVPSPKI---FGHRNRID 112
+ +CGGC LQH+ Y+ QL FK+K++K +L +V V P+ + + +RN+
Sbjct: 79 IYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNKAQ 138
Query: 113 LAI-TKDG---IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKD 168
+ + ++G GF ++ + I+D+ C + + EA++ +K+ + +N ++
Sbjct: 139 VPVGEREGGLVAGFYQQ-RSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERH 197
Query: 169 EGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFD--------FDSIYWSVNRSKSDV 220
+G+LR++++R G T E+M+ F+T+ + P + SI ++N +K++V
Sbjct: 198 KGWLRHIMVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNV 257
Query: 221 SYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILD 276
+G + WG+E+I + + DV + I SF+Q N Q L K E E E ++D
Sbjct: 258 IFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVID 317
Query: 277 MYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEIN-NVDAEFEVASDREVSVKGF- 334
Y G+GT ++LAK+ V G + AIE A+RN E+N N +AEF V V K +
Sbjct: 318 AYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPKWYE 377
Query: 335 -----DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD---YRIDEI 386
DT++VDPPR G L++ + KP +VYVSCNP T ARD+++L+ Y E+
Sbjct: 378 EGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDGGYVTREV 437
Query: 387 VALDMFPHTPHVE 399
+DMFPHT HVE
Sbjct: 438 QPVDMFPHTNHVE 450
>pir||F69806 RNA methyltransferase homolog yfjO - Bacillus subtilis
>gi|2633126|emb|CAB12631.1| (Z99108) similar to RNA
methyltransferase [Bacillus subtilis]
>gi|2780399|dbj|BAA24300.1| (D78509) YfjO [Bacillus
subtilis]
Length = 466
Score = 208 bits (524), Expect = 9e-53
Identities = 147/435 (33%), Positives = 224/435 (50%), Gaps = 37/435 (8%)
Query: 8 LNDDGFGVLKG--ILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPRCKAFG 65
+N +G G K + VP + PG+E++V+ + K K+ ++S RV P C +
Sbjct: 27 INGEGVGYFKKKVVFVPGALPGEEVVVQATKVQPKFSEGRIKKIRKASEHRVAPPCPVYE 86
Query: 66 KCGGCTLQHLNYDYQLEFKR----KKLKRILGFEVEVVPSPKIFG------HRNRIDLAI 115
+CGGC LQHL Y QL KR + L+R F+VE + + G +RN+ I
Sbjct: 87 QCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQI 146
Query: 116 TKDGIGFRERGKW----WKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGF 171
+ G G + IV I +C V + + ++ +E+ +SV+N +K +G
Sbjct: 147 GRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGD 206
Query: 172 LRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYF--------DFDSIYWSVNRSKSDVSYG 223
+R +V R G T EV V VT + LP + SI +VN +K+ V +G
Sbjct: 207 VRTIVTRVGFETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFG 266
Query: 224 D-IERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNL---VRKVSELVEGEKILDMYS 279
+ ++ GK I+E L DV + + +FFQ N Q V L V+K ++L EK++D Y
Sbjct: 267 EKTKQLAGKTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAYC 326
Query: 280 GVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDRE-----VSVKGF 334
GVGT G+++A V+G D + +I+ A++N + + + V E + +GF
Sbjct: 327 GVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWTKEGF 386
Query: 335 --DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML--DYRIDEIVALD 390
D VIVDPPR G + + + KP VYVSCNP T A+D++ L DYR+D I +D
Sbjct: 387 RPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQTLSKDYRVDYIQPVD 446
Query: 391 MFPHTPHVELVAKLV 405
MFP T HVE VA+LV
Sbjct: 447 MFPQTAHVEAVARLV 461
>dbj|BAB04616.1| (AP001510) RNA methyltransferase [Bacillus halodurans]
Length = 463
Score = 206 bits (518), Expect = 5e-52
Identities = 140/436 (32%), Positives = 227/436 (51%), Gaps = 39/436 (8%)
Query: 8 LNDDGFGVLKG--ILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPRCKAFG 65
+N +G G K + VP + PG+E++VE + + AS K+ +SSP R+ P C +
Sbjct: 25 INGEGVGYFKRHVVFVPGALPGEEVVVEVTDVKPRFAEASIRKIRKSSPDRISPPCPVYD 84
Query: 66 KCGGCTLQHLNYDYQLEFKRKKLKR-------ILGFEVEVVPSPKI---FGHRNRIDLAI 115
+CGGC LQHL+Y+ L+ KR+ +K+ + + ++P+ + + +RN+ L +
Sbjct: 85 QCGGCQLQHLSYEATLKEKREIVKQAFERHTTLRADTLTILPTIGMEDPWAYRNKSQLQL 144
Query: 116 TKDGIGFRERGKW----WKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGF 171
K G + G + K+VD+ C V + EA E +K+ +++ +I +N +K G
Sbjct: 145 -KTEKGQVKAGLYVMNTHKLVDLSSCLVQHDATNEASEVVKQIVQDLQIPTYNERKRTGI 203
Query: 172 LRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFD--------FDSIYWSVNRSKSDVSYG 223
LR +V R G T E+ V VT + + P + S+ ++N K+ + G
Sbjct: 204 LRSVVSRVGFETGELQVILVTTKKDFPKKDLLVEEIKSRLPHVKSLQQNINPKKTSLIMG 263
Query: 224 D-IERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNL---VRKVSELVEGEKILDMYS 279
D +G+E I E L D+ + + +FFQ N Q V L V++ + L EK++D Y
Sbjct: 264 DETISLFGEETIEETLGDISFSLSARAFFQLNPKQTVKLYNEVKRAAALTGKEKVIDAYC 323
Query: 280 GVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEFEVASDREVSVKGF---- 334
GVGT G++LA + V+G D AIE A+ N + + + ++EV ++
Sbjct: 324 GVGTIGLWLADQAREVRGMDVIAEAIEDAKENAKRQGITNVQYEVGKAEKIIPSWVRSSW 383
Query: 335 --DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD---YRIDEIVAL 389
D ++VDPPR G +L+K + + KP IVYVSCNP T A+DV+ L Y++ I +
Sbjct: 384 IPDVIVVDPPRTGCDDQLLKTIKQTKPKRIVYVSCNPSTLAKDVEQLQRSGYKVKNIQPV 443
Query: 390 DMFPHTPHVELVAKLV 405
DMFP T VE LV
Sbjct: 444 DMFPWTAQVESCTLLV 459
>pir||E72298 hypothetical protein TM1094 - Thermotoga maritima (strain MSB8)
>gi|4981638|gb|AAD36170.1|AE001768_19 (AE001768) RNA
methyltransferase, putative [Thermotoga maritima]
Length = 439
Score = 190 bits (479), Expect = 2e-47
Identities = 128/430 (29%), Positives = 219/430 (50%), Gaps = 30/430 (6%)
Query: 5 IRKLNDDGFGVL-----KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGP 59
I+K+ + G+G+ K +LV + PG+E++++ + L++ S R+ P
Sbjct: 7 IQKMVNGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGKVVSLLKESEDRIKP 66
Query: 60 RCKAFGKCGGCTLQHLNYDYQLEFKRKKL-----KRILGFEVE-VVPSPKIFGHRNRIDL 113
C+ FG+CGGC + Y+ QL +K++ L + L EVE V PS +F +R +++
Sbjct: 67 PCRYFGRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKMEF 126
Query: 114 AITKDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLR 173
+G ++R + ++DI +C V + + E + +KE ++ + V+N + +G L+
Sbjct: 127 HFQGRKLGLKKRNSDF-VIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLK 185
Query: 174 YMVLREGKFTEEVMVNFVTKEGNLPDPTN--------YFDFDSIYWSVNRSKSDVSYGDI 225
++V+R T++ MV FVTK + P + + SI +N S V G
Sbjct: 186 HLVIRYAFSTDQFMVIFVTKTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPY 245
Query: 226 ERFWGKEFIRERLDDVDYLIHPNSFFQTN---SYQAVNLVRKVSELVEGEKILDMYSGVG 282
+ +G+ I E D + I P +FFQ+N + + ++ V + L E +LD+Y+G+G
Sbjct: 246 KTLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLDLYAGIG 305
Query: 283 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGF----DTVI 338
TF + + V +S+ A++ + N IN+ V D +K + D +I
Sbjct: 306 TFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNYSGRADRII 365
Query: 339 VDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDMFPHT 395
+DPPR+G P ++K + R P IVYVSC+P T RD+K+L Y I + DMFP T
Sbjct: 366 LDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIVRVKPFDMFPQT 425
Query: 396 PHVELVAKLV 405
HVE LV
Sbjct: 426 YHVETAVTLV 435
>pir||S77558 hypothetical protein sll1967 - Synechocystis sp. (strain PCC 6803)
>gi|1652483|dbj|BAA17405.1| (D90905) hypothetical
protein [Synechocystis sp.]
Length = 463
Score = 190 bits (477), Expect = 3e-47
Identities = 130/431 (30%), Positives = 217/431 (50%), Gaps = 36/431 (8%)
Query: 5 IRKLNDDGFGV----LKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
I LN G G+ + + VP +APGD + V V+ + +A K++ S R P
Sbjct: 23 ITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPSVQRTRPS 82
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKK----LKRILGFEV----EVVPSPKIFGHRNRID 112
C KCGGC QHL+Y +Q+E K+++ L+RI GF ++ SP G+RN+
Sbjct: 83 CIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKAT 142
Query: 113 LAITKDGIGFRERGKWWK----IVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKD 168
+++ G + G + K +V+I++CPV + +K+ IE S+++ +K
Sbjct: 143 YPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKK 202
Query: 169 EGFLRYMVLREGKFTEEVMVNFVTKEGNLPD--------PTNYFDFDSIYWSVNRSKSDV 220
+G LR++ LR G+ T E+++ ++ LPD Y D I ++ ++
Sbjct: 203 QGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNR 262
Query: 221 SYGD-IERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE---LVEGEKILD 276
+GD G+ RE+ D+ + + N+FFQ NS A L+ ++ + L E ++D
Sbjct: 263 IFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVD 322
Query: 277 MYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGF-- 334
Y+GVGTF + LA++ + N+ ++ +RN EIN + +A E +
Sbjct: 323 AYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSE 382
Query: 335 --DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML----DYRIDEIVA 388
D +++DPPR G P +++ + R++P I Y+SC P T ARD+K L Y I +
Sbjct: 383 IPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYGITWVQG 442
Query: 389 LDMFPHTPHVE 399
D FP T HVE
Sbjct: 443 CDFFPQTAHVE 453
>dbj|BAA20428.1| (AB004554) orf1; putative [Synechocystis sp.]
Length = 463
Score = 189 bits (476), Expect = 4e-47
Identities = 130/431 (30%), Positives = 217/431 (50%), Gaps = 36/431 (8%)
Query: 5 IRKLNDDGFGV----LKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
I LN G G+ + + VP +APGD + V V+ + +A K++ S R P
Sbjct: 23 ITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPSVQRTRPS 82
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKK----LKRILGFEV----EVVPSPKIFGHRNRID 112
C KCGGC QHL+Y +Q+E K+++ L+RI GF ++ SP G+RN+
Sbjct: 83 CIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTXLPLEPLLQSPASLGYRNKAT 142
Query: 113 LAITKDGIGFRERGKWWK----IVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKD 168
+++ G + G + K +V+I++CPV + +K+ IE S+++ +K
Sbjct: 143 YPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKK 202
Query: 169 EGFLRYMVLREGKFTEEVMVNFVTKEGNLPD--------PTNYFDFDSIYWSVNRSKSDV 220
+G LR++ LR G+ T E+++ ++ LPD Y D I ++ ++
Sbjct: 203 QGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNR 262
Query: 221 SYGD-IERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE---LVEGEKILD 276
+GD G+ RE+ D+ + + N+FFQ NS A L+ ++ + L E ++D
Sbjct: 263 IFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVD 322
Query: 277 MYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGF-- 334
Y+GVGTF + LA++ + N+ ++ +RN EIN + +A E +
Sbjct: 323 AYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSE 382
Query: 335 --DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML----DYRIDEIVA 388
D +++DPPR G P +++ + R++P I Y+SC P T ARD+K L Y I +
Sbjct: 383 IPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYGITWVQG 442
Query: 389 LDMFPHTPHVE 399
D FP T HVE
Sbjct: 443 CDFFPQTAHVE 453
>pir||E70323 RNA methyltransferase (TrmA-family) - Aquifex aeolicus
>gi|2982968|gb|AAC06582.1| (AE000681) RNA
methyltransferase (TrmA-family) [Aquifex aeolicus]
Length = 425
Score = 165 bits (413), Expect = 1e-39
Identities = 135/430 (31%), Positives = 222/430 (51%), Gaps = 48/430 (11%)
Query: 5 IRKLNDDGFGVL----KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
+ KL G+G K + V F++P + + + V+ K A K++ SSP R
Sbjct: 10 VEKLVYGGYGFSRLNGKAVFVRFASPKELVEAKVVKEKKDYTEAVVTKVLISSPARRKAP 69
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKR----KKLKRI-----LGFEVEVVPSPKIFGHRNRI 111
C +G+CGGC +QHLNY+ QL K+ + L+RI + +E E+ PS K F +R R+
Sbjct: 70 CPYYGECGGCQIQHLNYEEQLRSKKDILLESLERIGKIKEVPYEGEI-PSKKEFNYRVRV 128
Query: 112 DLAITKDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIE-----EEKISVWNIK 166
I ++ +GF R ++VD++EC + + E I ++E ++ +E ++
Sbjct: 129 QFKIQENRVGFY-RWDVKEVVDVEECLLAHERINELIPHIREVLKVIKDLQEVHVNYSPT 187
Query: 167 KDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSK-SDVSYGDI 225
+DE L+++ + T+E ++ + E LP+ W V V +
Sbjct: 188 RDEATLKFVTITH---TDEKLLQNIL-ENVLPE-----------WVVGIGDYGKVGNSLV 232
Query: 226 ERFW-GKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEG-EKILDMYSGVGT 283
+R+ G+E I + Y + +SFFQ N + +++V + E +K LD++ GVG
Sbjct: 233 KRYKVGREHIFMDVGKWQYRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKGLDLHCGVGF 292
Query: 284 FGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVAS-----DREVSVKGFDTV 337
F I L+++G ++G D+N AI+ A N +INN D FE A+ R + + + V
Sbjct: 293 FTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRIG-EVINLV 351
Query: 338 IVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDMFPH 394
+VDPPR+GL L + KP IVY+SCNP TFARD+K+L Y + + +D FP
Sbjct: 352 VVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQ 411
Query: 395 TPHVELVAKL 404
T H+E +A L
Sbjct: 412 TYHIESIALL 421
>dbj|BAB12711.1| (AP002746) putative RNA methyltransferase [Oryza sativa]
>gi|10934074|dbj|BAB16852.1| (AP002537) putative RNA
methyltransferase [Oryza sativa]
Length = 557
Score = 165 bits (413), Expect = 1e-39
Identities = 136/468 (29%), Positives = 220/468 (46%), Gaps = 83/468 (17%)
Query: 19 ILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLR--VGPRCKAFGKCGGCTLQHLN 76
+L + PG+ ++ RV R+++ A KL P R V C CGGC Q L
Sbjct: 88 LLCDGALPGERLLA-RVRRIRRGAFAEAAKLRTLEPHRDAVDAPCPLAADCGGCKAQSLA 146
Query: 77 YDYQLEFKRKKLKRIL-----------------GFEVEVVPSPKIFGHRNRIDLA----- 114
Y Q+ K +++ +L +VP +IF +RN+++ +
Sbjct: 147 YAAQIRHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEIFRYRNKMEFSFGTKR 206
Query: 115 -------------------ITKDG--IGFRERGKWWKIVDIDECPVFGKTSREAIERLKE 153
+ DG +G G + K++ +++C + + + + + ++E
Sbjct: 207 WMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEPADKVLAIVQE 266
Query: 154 FIEEEKISV--WNIKKDEGFLRYMVLREGKF----TEEVMVNFVTK--EGNLPDP----- 200
+ + + +++ K GFL+++++R G+ EVMVNFVT + L +P
Sbjct: 267 TWLDPALGLTPYDVHKHVGFLKHLMIRTGRNITTGAPEVMVNFVTSCYKPELLEPLVNNI 326
Query: 201 TNYFDFDSIYWSVNRSKSDVSYGDIE-RFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAV 259
T + SI +VN S + S G+ E +GK I E L + + I NSFFQTN+ QA
Sbjct: 327 TKIPEVVSIMNNVNTSVGNTSVGEEEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQAD 386
Query: 260 NLVRKVSELVE-----GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEI 314
L + + E E ILD++ G GT G+ LA+R +V G++ AI A++N ++
Sbjct: 387 VLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKL 446
Query: 315 NNVDAEFEVASD----REVSVKGF---DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSC 367
N + V D E K F D +I DP R G+H +L+K L K IVYVSC
Sbjct: 447 NGISNATFVQGDLNKINETFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSC 506
Query: 368 NPETFARDVKMLDYRIDE-----------IVALDMFPHTPHVELVAKL 404
NP T ARD+ L + ++E ++ +DMFPHTPH+E + L
Sbjct: 507 NPATCARDLDYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVL 554
>dbj|BAB01724.1| (AB023045) RNA methyltransferase-like protein [Arabidopsis
thaliana]
Length = 554
Score = 164 bits (412), Expect = 1e-39
Identities = 136/465 (29%), Positives = 229/465 (49%), Gaps = 75/465 (16%)
Query: 11 DGFGVLKGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLR--VGPRCKAFGKCG 68
DG G + ++ + PG+ + RV R +K A K+ SP + V C+ CG
Sbjct: 91 DGTGYV--VMCDRALPGERFL-GRVTR-RKGSYAEVTKMKTISPHKDLVEAPCEYASYCG 146
Query: 69 GCTLQHLNYDYQLEFKRKKLKRILGFE---------VEVVPSPKI-----FGHRNRIDLA 114
GC Q+L+Y+ QL K +++ ++ +E+V P + F +RN+++ +
Sbjct: 147 GCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFS 206
Query: 115 I-------------TKDG-----IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIE 156
+DG +G G + K++++D+C + + + +++
Sbjct: 207 FGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWR 266
Query: 157 EEKISV--WNIKKDEGFLRYMVLREGKFTE----EVMVNFVTK--EGNLPDP-----TNY 203
+ ++S+ ++ + GFL++++LR G+ E E+MVNFVT + L P ++
Sbjct: 267 DPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSI 326
Query: 204 FDFDSIYWSVNRSKSDVSYGDIE-RFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLV 262
SI +VN S + S G+ E +GK+ I E L + + I NSFFQTN++QA L
Sbjct: 327 PQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLY 386
Query: 263 RKVSELVE-----GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV 317
+ + E E +LD++ G GT G+ LA+R +V G++ AI A +N +IN +
Sbjct: 387 KLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGI 446
Query: 318 DAEFEVASDREVSVKGF-------DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPE 370
+ + D + F D VI DP R G+H +L+K L + K I+YVSCNP
Sbjct: 447 ENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPA 506
Query: 371 TFARDVKMLDYRIDE-----------IVALDMFPHTPHVELVAKL 404
T ARD+ L + ++E + +DMFPHTPH+E V L
Sbjct: 507 TCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 551
>pir||H71476 probable rRNA methyltransferse - Chlamydia trachomatis (serotype
D, strain UW3/Cx)
Length = 430
Score = 132 bits (328), Expect = 9e-30
Identities = 104/385 (27%), Positives = 174/385 (45%), Gaps = 41/385 (10%)
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVE------VVPSPKIFGHRNRIDLA 114
CK FG CGGC+ + Y L+ K L + + V+P + RN+++ +
Sbjct: 42 CKHFGVCGGCSSPQMEYASSLKTKELALHNLFAPLIPSQNILPVIPCSPLLRGRNKMEFS 101
Query: 115 I--TKDG---IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEF-IEEEKISVWNIKKD 168
T DG +GF K K + I EC + + + + + + + +S + +
Sbjct: 102 FYQTVDGEKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLN 161
Query: 169 EGFLRYMVLREGKFTEEVMVNFVTK-EGNLPDPTNYFD------------FDSIYWSVNR 215
+G L + +R G + + M+ T P N SI+W
Sbjct: 162 KGSLCTITVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKL 221
Query: 216 S-KSDVSYGDIERFWGKEFIRERL--DDVDYLIH--PNSFFQTNSYQAVNLVRKVSELVE 270
S ++ + +G F++++L D L H P SFFQ S QA +++ + E ++
Sbjct: 222 SARNSPTTFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFID 281
Query: 271 G---EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVAS-- 325
E +LD+Y G G GI LA + G + A+ A+ N+++N+VD E +
Sbjct: 282 PCGEETLLDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVDMEVFLEDAK 341
Query: 326 ---DREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML--- 379
R ++ D V++DPPR G+ R +K L R P IVYVSCNP T ++ +L
Sbjct: 342 QFCKRNENLPSPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQ 401
Query: 380 DYRIDEIVALDMFPHTPHVELVAKL 404
Y++ + +D FPHT H+E + L
Sbjct: 402 GYQLRRMQPIDQFPHTNHLENIVLL 426
>sp|P55137|Y742_CHLTR HYPOTHETICAL RNA METHYLTRANSFERASE CT742 (PROTEIN HOM1)
>gi|6578112|gb|AAC68337.2| (AE001345) rRNA
Methyltransferse [Chlamydia trachomatis]
Length = 396
Score = 132 bits (328), Expect = 9e-30
Identities = 104/385 (27%), Positives = 174/385 (45%), Gaps = 41/385 (10%)
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVE------VVPSPKIFGHRNRIDLA 114
CK FG CGGC+ + Y L+ K L + + V+P + RN+++ +
Sbjct: 8 CKHFGVCGGCSSPQMEYASSLKTKELALHNLFAPLIPSQNILPVIPCSPLLRGRNKMEFS 67
Query: 115 I--TKDG---IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEF-IEEEKISVWNIKKD 168
T DG +GF K K + I EC + + + + + + + +S + +
Sbjct: 68 FYQTVDGEKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLN 127
Query: 169 EGFLRYMVLREGKFTEEVMVNFVTK-EGNLPDPTNYFD------------FDSIYWSVNR 215
+G L + +R G + + M+ T P N SI+W
Sbjct: 128 KGSLCTITVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKL 187
Query: 216 S-KSDVSYGDIERFWGKEFIRERL--DDVDYLIH--PNSFFQTNSYQAVNLVRKVSELVE 270
S ++ + +G F++++L D L H P SFFQ S QA +++ + E ++
Sbjct: 188 SARNSPTTFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFID 247
Query: 271 G---EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVAS-- 325
E +LD+Y G G GI LA + G + A+ A+ N+++N+VD E +
Sbjct: 248 PCGEETLLDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVDMEVFLEDAK 307
Query: 326 ---DREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML--- 379
R ++ D V++DPPR G+ R +K L R P IVYVSCNP T ++ +L
Sbjct: 308 QFCKRNENLPSPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQ 367
Query: 380 DYRIDEIVALDMFPHTPHVELVAKL 404
Y++ + +D FPHT H+E + L
Sbjct: 368 GYQLRRMQPIDQFPHTNHLENIVLL 392
>sp|Q9Z721|Y885_CHLPN HYPOTHETICAL RNA METHYLTRANSFERASE CPN0885 >gi|7468543|pir||A72023
rRNA methyltransferse - Chlamydophila pneumoniae (strain
CWL029) >gi|4377204|gb|AAD19023.1| (AE001669) rRNA
Methyltransferse [Chlamydophila pneumoniae CWL029]
Length = 401
Score = 125 bits (311), Expect = 9e-28
Identities = 104/391 (26%), Positives = 182/391 (45%), Gaps = 49/391 (12%)
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVE------VVP-SPKIFGHRNRIDL 113
C FG CGGC+ NY L+ K + L ++ V ++P SP + G RN+++
Sbjct: 7 CPHFGVCGGCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRG-RNKMEF 65
Query: 114 AI--TKDG---IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEE-KISVWNIKK 167
+ T +G +GF K K + + C + + + + ++ +E+ ++ ++ + K
Sbjct: 66 SFFQTYEGEKSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPK 125
Query: 168 DEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFD--------------SIYWSV 213
++G L + +R G + MV +T G N D SIYW
Sbjct: 126 NKGSLCTLTVRTGSPQQNFMV-ILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEE 184
Query: 214 NRSKSDVS-YGDIERFWGKEFIRERL------DDVDYLIHPNSFFQTNSYQAVNLVRKVS 266
+ +S Y + + +G I+++L + + + P SFFQ QA ++
Sbjct: 185 KVAARGISTYYETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKIIETAK 244
Query: 267 ELVE---GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEV 323
E + E +LD+Y G GT GI L+ NV G + A+ A+ N++ NN + EV
Sbjct: 245 EFINPEGSETLLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEV 304
Query: 324 ASD-------REVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDV 376
+ R + K D +I+DPPR G+ +++K + R IVY+SCNP+T ++
Sbjct: 305 YLEDAKAFCKRNENCKAPDVIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQEC 364
Query: 377 KML---DYRIDEIVALDMFPHTPHVELVAKL 404
L YRI ++ +D FP++ H+E + L
Sbjct: 365 ADLISGGYRIKKMQPIDQFPYSTHLENIILL 395
>gb|AAF73721.1| (AE002256) RNA methyltransferase, TrmA family [Chlamydophila
pneumoniae AR39] >gi|8979259|dbj|BAA99093.1| (AP002548)
rRNA methyltransferse [Chlamydophila pneumoniae J138]
Length = 401
Score = 125 bits (311), Expect = 9e-28
Identities = 104/391 (26%), Positives = 182/391 (45%), Gaps = 49/391 (12%)
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVE------VVP-SPKIFGHRNRIDL 113
C FG CGGC+ NY L+ K + L ++ V ++P SP + G RN+++
Sbjct: 7 CPHFGVCGGCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRG-RNKMEF 65
Query: 114 AI--TKDG---IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEE-KISVWNIKK 167
+ T +G +GF K K + + C + + + + ++ +E+ ++ ++ + K
Sbjct: 66 SFFQTYEGEKSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPK 125
Query: 168 DEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFD--------------SIYWSV 213
++G L + +R G + MV +T G N D SIYW
Sbjct: 126 NKGSLCTLTVRTGSPQQNFMV-ILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEE 184
Query: 214 NRSKSDVS-YGDIERFWGKEFIRERL------DDVDYLIHPNSFFQTNSYQAVNLVRKVS 266
+ +S Y + + +G I+++L + + + P SFFQ QA ++
Sbjct: 185 KVAARGISTYYETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKIIETAK 244
Query: 267 ELVE---GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEV 323
E + E +LD+Y G GT GI L+ NV G + A+ A+ N++ NN + EV
Sbjct: 245 EFINPEGSETLLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEV 304
Query: 324 ASD-------REVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDV 376
+ R + K D +I+DPPR G+ +++K + R IVY+SCNP+T ++
Sbjct: 305 YLEDAKAFCKRNENCKAPDVIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQEC 364
Query: 377 KML---DYRIDEIVALDMFPHTPHVELVAKL 404
L YRI ++ +D FP++ H+E + L
Sbjct: 365 ADLISGGYRIKKMQPIDQFPYSTHLENIILL 395
>pir||A82075 probable TrmA family RNA methyltransferase VC2452 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9657029|gb|AAF95594.1| (AE004315) TrmA family RNA
methyltransferase, putative [Vibrio cholerae]
Length = 440
Score = 125 bits (310), Expect = 1e-27
Identities = 116/437 (26%), Positives = 203/437 (45%), Gaps = 57/437 (13%)
Query: 5 IRKLNDDGFGVL----KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
I +L+ G G+ K + V + PG+E++++ E K K+++ S RV P
Sbjct: 22 IERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPF 81
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRI--------LGFEVEVVPSPKIFGHRNRID 112
C + +CGGC LQHL+ Q+ K++ L ++ L V + + R R+
Sbjct: 82 CAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLS 141
Query: 113 LAITKDG----IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEE----EKISVWN 164
L K +GFR R + IV++ CPV + + L + E E++
Sbjct: 142 LMWDKKTQQLQLGFR-RKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVE 200
Query: 165 IKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGD 224
+ K + R +VLR E +T + T Y ++ G+
Sbjct: 201 LVKGDN-TRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEA--------------GE 245
Query: 225 IERFWGKE-FIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVS-----ELVEGEKILDMY 278
++ G+ + E + +L P+ F Q N +AVN V E+ E++LD++
Sbjct: 246 LQHVQGEAPYCEETGSRLSFL--PSHFIQVN--RAVNQHMVVQALNWLEVSPQERVLDLF 301
Query: 279 SGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREV-----SV 331
G+G F + LAK+ V G + + ++ A N ++N ++ A ++ ++++ +
Sbjct: 302 CGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQ 361
Query: 332 KGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVA 388
+ F V++DP RAG +V +L+ +VYVSCNP T ARD + L +R++++
Sbjct: 362 QKFAKVLLDPARAGAE-GIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGM 420
Query: 389 LDMFPHTPHVELVAKLV 405
LDMFPHT H+E +A V
Sbjct: 421 LDMFPHTSHLESMALFV 437
>pir||E82569 RNA methyltransferase XF2358 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107532|gb|AAF85157.1|AE004045_15
(AE004045) RNA methyltransferase [Xylella fastidiosa]
Length = 443
Score = 122 bits (304), Expect = 6e-27
Identities = 123/447 (27%), Positives = 196/447 (43%), Gaps = 79/447 (17%)
Query: 8 LNDDGFGVLK----GILVPF---SAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
L+ DG GV + G V F + PG+ +IVE V R + A +++++SP RV PR
Sbjct: 19 LSHDGRGVARPHGEGDKVTFVTGALPGEVVIVEPVARNRHFDEARVVEVLQASPQRVIPR 78
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVP-------SPKIFGHRNRIDL 113
C FG C GC LQHL D Q+ K++ L L V P + + +G+R +
Sbjct: 79 CSHFGVCSGCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLPALAAESWGYRRKGRF 138
Query: 114 AIT---KDG---IGFRERGKWWKIVDIDECPVFGKTSREAIERLK--------------- 152
++ K G +GFRE + + D+ C E I L
Sbjct: 139 SVRWVEKKGRTLVGFREHDPRF-VADVSVCHTVVPQVGEKIALLATLLNSLDGRRDVPQI 197
Query: 153 EFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWS 212
EFI + + ++ + L +F +E + + G +
Sbjct: 198 EFIAGDAVVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVES------------- 244
Query: 213 VNRSKSDVSYGDIERFWGKEFI---RERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV 269
+ W E + R + DV+++ P F Q N ++ +L+
Sbjct: 245 ------------VRLLWPDEVLLAFRLKPWDVEFVFRPLDFIQINGGLNEKMIAHALDLL 292
Query: 270 E---GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEFEVAS 325
GE++LD++ G+G F + LA+ V G + + +E AR N N + +AEF VA
Sbjct: 293 GAGFGERVLDLFCGLGNFTLPLARTVDEVVGVEGDIGLVERARENARRNGLGNAEFFVAD 352
Query: 326 ------DREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML 379
D +GFD +++DPPR+G ++K+L + IVYVSC+P + ARD L
Sbjct: 353 LTRDQRDAPWMRQGFDKLLLDPPRSGA-IEVLKQLPLKMFERIVYVSCHPGSLARDADFL 411
Query: 380 ----DYRIDEIVALDMFPHTPHVELVA 402
+ + + A+DMFPHT HVE +A
Sbjct: 412 VNEQGFVLRAVGAMDMFPHTAHVESIA 438
>sp|P55135|YGCA_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA-BARA INTERGENIC REGION
>gi|7449341|pir||E65060 ygcA protein - Escherichia coli
(strain K-12) >gi|882679|gb|AAA69295.1| (U29580)
alternate gene name ygcA; ORF_f433 [Escherichia coli]
>gi|1789148|gb|AAC75827.1| (AE000362) putative enzyme
[Escherichia coli K12]
Length = 433
Score = 122 bits (302), Expect = 1e-26
Identities = 111/427 (25%), Positives = 186/427 (42%), Gaps = 55/427 (12%)
Query: 5 IRKLNDDGFGVL----KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60
+ L+ G GV K + +P P + V E K+ A + + SP R PR
Sbjct: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80
Query: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAIT---- 116
C FG CGGC QH + D Q K L R++ +V V + +G+R R L++
Sbjct: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPK 140
Query: 117 --KDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKIS-----VWNIKKDE 169
+ +GFR+ G IVD+ +CP+ + +++ + + V ++
Sbjct: 141 TQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATS 199
Query: 170 GFLRYMVLRE----GKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDI 225
G L M+LR E + F EG +Y + + + G++
Sbjct: 200 GTL--MILRHTAPLSSADREKLERFSHSEGL-----------DLYLAPDSEILETVSGEM 246
Query: 226 ERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILDMYSGVG 282
+ + + P F Q N+ +V + E ++ +++LD++ G+G
Sbjct: 247 PWYDS--------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298
Query: 283 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-------KGFD 335
F + LA + +V G + +E ++N +N + + E V GFD
Sbjct: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358
Query: 336 TVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDMF 392
V++DP RAG +++++ + +P IVYVSCNP T ARD + L Y I + LDMF
Sbjct: 359 KVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417
Query: 393 PHTPHVE 399
PHT H+E
Sbjct: 418 PHTGHLE 424
>pir||B83530 probable RNA methyltransferase PA0933 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946837|gb|AAG04322.1|AE004527_9 (AE004527) probable
RNA methyltransferase [Pseudomonas aeruginosa]
Length = 450
Score = 118 bits (293), Expect = 1e-25
Identities = 121/447 (27%), Positives = 186/447 (41%), Gaps = 75/447 (16%)
Query: 2 RGVIRKLNDDGFGVLKGI----LVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRV 57
R I +L DG G+ V PG+E+ + K A +L SS LR
Sbjct: 28 RLTIERLAHDGRGIAHEAGMTWFVSGGLPGEELEARVLGARSKVVDARSERLFSSSDLRR 87
Query: 58 GPRCKAFGKCGGCTLQHLNYDYQLEFKRK----KLKRILGFEVEVVPSPKI---FGHRNR 110
C G+CGGCTLQHL + QL K++ +L+R G E E +P + FG+R R
Sbjct: 88 REPCTVAGRCGGCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRR 147
Query: 111 IDLAITKDG------IGFRERGKWWKIVDIDEC----PVFGKTSREAIERLKEFIEEEKI 160
+A+ D +GFR +IV DEC P +R L++F + E
Sbjct: 148 ARIAVRWDARARRLDVGFRASASQ-EIVAFDECLVLVPPLQTIARALPALLQDFRKPE-- 204
Query: 161 SVWNIKKDEGFLRYMVLRE------------GKFTEEVMVNFVTKEGNLPDPTNYFDFDS 208
S+ +++ G ++LR F + P P
Sbjct: 205 SIGHVELFHGTASALLLRHTTALVDEDRQRLAAFCSAHQAQLWLQGAEQPLPVE------ 258
Query: 209 IYWSVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSEL 268
++ S GD W + P F Q N+ +++R+ +
Sbjct: 259 -----PAAELGYSLGD----W----------QLTLAYRPGDFVQVNAPVNESMIRQALDW 299
Query: 269 VE---GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEF--- 321
+ E++LD++ G+G F + LA+R V G + +E A N N + +A F
Sbjct: 300 LAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANALANGLGNAHFFQA 359
Query: 322 ---EVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKM 378
+ ++ + +GF V++DPPR G V+ ++ +VYVSCNP T ARD
Sbjct: 360 DLSKALAEAPWAEQGFTAVLLDPPRDGAF-EAVREMSSLGARRVVYVSCNPATLARDAGE 418
Query: 379 L---DYRIDEIVALDMFPHTPHVELVA 402
+ YR+ LDMFP T HVE +A
Sbjct: 419 MARQGYRLKRAGILDMFPQTAHVEAMA 445
>sp|Q09833|YAD7_SCHPO HYPOTHETICAL 59.6 KD PROTEIN C4G8.07C IN CHROMOSOME I
>gi|2130434|pir||S62484 hypothetical protein SPAC4G8.07c
- fission yeast (Schizosaccharomyces pombe)
>gi|7491148|pir||T38852 hypothetical protein SPAC4G8.07c
- fission yeast (Schizosaccharomyces pombe)
>gi|1022352|emb|CAA91208.1| (Z56276) hypothetical
protein [Schizosaccharomyces pombe]
Length = 527
Score = 117 bits (291), Expect = 2e-25
Identities = 112/442 (25%), Positives = 183/442 (41%), Gaps = 93/442 (21%)
Query: 11 DGFGVL----KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGP--RCKAF 64
DG G++ ++VPF+ PGD + + +A +++ S R +C F
Sbjct: 126 DGIGLVCNDQYAVVVPFTLPGDIVKAKLHFLADTYALADFLEVISPSEDRDDTLIKCPYF 185
Query: 65 GKCGGCTLQHLNYDYQLEFKRKKLKR-----------ILGFEVEVVPSPKIFGHRNRID- 112
KCGGC Q L+YD QL K++ +++ +L + V SP + +R +I
Sbjct: 186 AKCGGCQYQMLSYDKQLLQKKRVVEKAFQYYSKLDSSLLPAIKDTVGSPLQYNYRTKITP 245
Query: 113 -LAITKDG------IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNI 165
+ K G IGF+E+G+ +++DI+ECP+ KT E ++ E ++
Sbjct: 246 HFDVPKGGTKGPLIIGFQEKGRR-RVMDIEECPIATKTINEEYPKIIEDVQS-------- 296
Query: 166 KKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDI 225
R + G +M + T++G T++
Sbjct: 297 -------RANTFKRGATI--LMRDSATEDGKHCVITDH---------------------- 325
Query: 226 ERFWGKEFIRERLDDVDYLIHPNSFFQTN--------SYQAVNLVRKVS--ELVEGEKIL 275
K +RE+ D+ + +FFQ N SY L+ E + +
Sbjct: 326 -----KMIVREQFGDLSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRKEHQRPKYFV 380
Query: 276 DMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFD 335
D Y G G F + +K +V G + + ++ A N + NNV + E +
Sbjct: 381 DAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSSIE 440
Query: 336 T------VIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-------DYR 382
T +++DPPR G + +L P IVY+SCN T ARDV L Y+
Sbjct: 441 TPPNETAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGFLLSQEKGRSYK 500
Query: 383 IDEIVALDMFPHTPHVELVAKL 404
IDEI D+FP + HVE + L
Sbjct: 501 IDEIRGFDLFPQSHHVESILTL 522
>sp|P75817|YBJF_ECOLI HYPOTHETICAL RNA METHYLTRANSFERASE IN POTI-ARTJ INTERGENIC REGION
>gi|7466849|pir||C64824 probable RNA methyltransferase
ybjF - Escherichia coli >gi|1787083|gb|AAC73946.1|
(AE000187) putative enzyme [Escherichia coli K12]
>gi|4062444|dbj|BAA35573.1| (D90724) Hypothetical RNA
methyltransferase HI0958 (EC 2.1.1.-). [Escherichia
coli]
Length = 375
Score = 117 bits (290), Expect = 3e-25
Identities = 100/367 (27%), Positives = 166/367 (44%), Gaps = 28/367 (7%)
Query: 65 GKCGGCTLQHLNYDYQLEFKRKKLKRILG-FEVEVVPSPKIF---GHRNRIDLAIT---- 116
G+C C QL K LK +L F VE +P G RN+ + ++
Sbjct: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE 68
Query: 117 KDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMV 176
K +G R + D+ +CP++ + LK FI ++ +N+ + G L+Y++
Sbjct: 69 KPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYIL 126
Query: 177 LREGKFTEEVMVNFV----TKEGNLPDPTNYF-----DFDSIYWSVNRSKSDVSYGDIER 227
L E + +M+ FV TK L + I ++ + G+ E
Sbjct: 127 LTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEI 186
Query: 228 FWGKE-FIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEG---EKILDMYSGVGT 283
+ ++ + ER +DV I P SFFQTN A L + V + + D++ GVG
Sbjct: 187 YLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGG 246
Query: 284 FGIYLAKRGFNVKGFDSNEFAIEMARRNV-EINNVDAEFEVASDREVSVKGFDT---VIV 339
FG++ A + G + AI A+++ E+ +F+ + + D V+V
Sbjct: 247 FGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLV 306
Query: 340 DPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-DYRIDEIVALDMFPHTPHV 398
+PPR G+ L L+ P I+Y SCN +T A+D++ L +RI+ + DMFPHT H
Sbjct: 307 NPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHY 366
Query: 399 ELVAKLV 405
E++ LV
Sbjct: 367 EVLTLLV 373
>pir||A82399 probable TrmA family RNA methyltransferase VCA0929 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658366|gb|AAF96826.1| (AE004420) TrmA family RNA
methyltransferase, putative [Vibrio cholerae]
Length = 375
Score = 113 bits (281), Expect = 3e-24
Identities = 97/368 (26%), Positives = 172/368 (46%), Gaps = 32/368 (8%)
Query: 66 KCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFG----HRNRIDLAITKDG-- 119
+C C L Y Q+ K ++L+ ++ +V P + RN+ + +
Sbjct: 10 RCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHA 69
Query: 120 --IGFRE-RGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMV 176
+G + +G+ +V CP++ + +E + L+ +I I +N K +G L++++
Sbjct: 70 PILGIEDAQGQPLSLVT---CPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFIL 126
Query: 177 LREGKFTEEVMVNFVTK--------EGNLPDPTNYFDFDSIYWSVNRSKSDVSY--GDIE 226
L + + + M+ FV + E NLP F + SVN ++ G+ E
Sbjct: 127 LTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVI-SVNIQPVHMARLEGEEE 185
Query: 227 RFWGK-EFIRERLDDVDYLIHPNSFFQTNSYQAVNL---VRKVSELVEGEKILDMYSGVG 282
F + + + E +DV +I P SFFQTN A L R + ++ D++ GVG
Sbjct: 186 IFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVG 245
Query: 283 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD----AEFEVASDREVSVKGFDTVI 338
F ++ A V G + AI A+R+ ++ +D A + A + + + V+
Sbjct: 246 GFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPELVL 305
Query: 339 VDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDV-KMLDYRIDEIVALDMFPHTPH 397
V+PPR GL L +L P I+Y SCNP+T +D+ ++ Y++ + DMFPHT H
Sbjct: 306 VNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFDMFPHTDH 365
Query: 398 VELVAKLV 405
E++ LV
Sbjct: 366 AEVLTLLV 373
>emb|CAC01942.1| (AJ250970) tRNA(m5U54)methyltransferase [Saccharomyces cerevisiae]
Length = 569
Score = 111 bits (274), Expect = 2e-23
Identities = 114/447 (25%), Positives = 178/447 (39%), Gaps = 76/447 (17%)
Query: 19 ILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGP--RCKAFGKCGGCTLQHLN 76
+++PF PGD + ++ + + +V SP+R R K FGK G L+ L
Sbjct: 129 VIIPFGLPGDVVNIKVFKTHPYYVESDLLDVVEKSPMRRDDLIRDKYFGKSSGSQLEFLT 188
Query: 77 YDYQLEFKRKKLKRILGFEVE-------------VVPSPKIFGHRNRI----DLAITKD- 118
YD QLE KRK + F V SP FG+R +I D+ K
Sbjct: 189 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQK 248
Query: 119 --------GIGFRERGKWWK----------IVDIDECPVFGKTSREAIERLKEFIEEEKI 160
G G + R +W K I+DIDEC + + + + + E+E
Sbjct: 249 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQE-- 306
Query: 161 SVWNIKKDEGFL---RYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSK 217
N KK L +L K T E + +++ N D Y V K
Sbjct: 307 -FKNYKKGATILLRENTTILDPSKPTLEQLTEEASRDEN---------GDISYVEVEDKK 356
Query: 218 SDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK---- 273
++V ++ + E +D + FFQ N+ + + V + ++
Sbjct: 357 NNVRLAKTCVTNPRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDD 416
Query: 274 -----ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDRE 328
++D Y G G F I +K V G + + ++ A +N + N V+ + E
Sbjct: 417 NKTKFLVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAE 476
Query: 329 VSVKGFDT------VIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML--- 379
+ DT VI+DPPR G +K+L P I+Y+SCN + ARDV+
Sbjct: 477 KLFESIDTPSENTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLKE 536
Query: 380 -----DYRIDEIVALDMFPHTPHVELV 401
++I+ I D FP T HVE V
Sbjct: 537 TENGSAHQIESIRGFDFFPQTHHVESV 563
>gb|AAA91052.1| (M94254) pCTHom1 gene product [Chlamydia trachomatis]
Length = 333
Score = 110 bits (272), Expect = 3e-23
Identities = 88/322 (27%), Positives = 148/322 (45%), Gaps = 33/322 (10%)
Query: 116 TKDG---IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEF-IEEEKISVWNIKKDEGF 171
T DG +GF K K + I EC + + + + + + + +S + ++G
Sbjct: 8 TVDGEKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLNKGS 67
Query: 172 LRYMVLREGKFTEEVMVNFVTK-EGNLPDPTNYFD------------FDSIYWSVNRS-K 217
L + +R G + + M+ T P N SI+W S +
Sbjct: 68 LCTITVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKLSAR 127
Query: 218 SDVSYGDIERFWGKEFIRERL--DDVDYLIH--PNSFFQTNSYQAVNLVRKVSELVEG-- 271
+ + +G F++++L D L H P SFFQ S QA +++ + E ++
Sbjct: 128 NSPTTFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFIDPCG 187
Query: 272 -EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVAS----- 325
E +LD+Y G GT GI LA + G + A+ A+ N+++N+VD E +
Sbjct: 188 EETLLDLYCGRGTIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVDMEVFLEDAKQFC 247
Query: 326 DREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYR 382
R ++ D V++DPPR G+ + +K L R P IVYVSCNP T ++ +L Y+
Sbjct: 248 KRNENLPSPDIVVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQ 307
Query: 383 IDEIVALDMFPHTPHVELVAKL 404
+ + +D FPHT H+E + L
Sbjct: 308 LRHMQPIDQFPHTNHLENIVLL 329
>pir||T34574 hypothetical protein SC10A5.06 SC10A5.06 - Streptomyces coelicolor
>gi|2815315|emb|CAA16438.1| (AL021529) SC10A5.06,
unknown, len: 458; similar to M. tubercul osis
hypothetical protein TR:O07191 (EMBL:Z96072) MTCY05A6.
10C (405 aa), fasta scores; opt: 455 z-score: 878.5 E():
0, 38.4% identity in 417 aa overlap, and weakly simialar
to s everal pu>
Length = 458
Score = 108 bits (267), Expect = 1e-22
Identities = 109/424 (25%), Positives = 176/424 (40%), Gaps = 63/424 (14%)
Query: 19 ILVPFSAPGDEIIVERVERVKKRRV--ASQWKLVRSSPLRVGPRCKAFG--KCGGCTLQH 74
+ V + PG+ ++ E + R A +++ S R+ C G +CGGC QH
Sbjct: 53 LFVRHTLPGERVVARVTEGEEGARFLRADAVEILDPSKDRIEAPCPFAGPGRCGGCDWQH 112
Query: 75 LNYDYQLEFK----RKKLKRILGF--------------EVEVVPSPKIFGHRNRIDLAIT 116
Q K ++L+R+ G E + +P+ ++ R R+ A+
Sbjct: 113 AKPGAQRRLKGEVVAEQLQRLAGLTPEEAGWDGTVMPAEGDKLPAGQVPSWRTRVQFAVD 172
Query: 117 KDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMV 176
DG R + +I ID C I E +S I++ +
Sbjct: 173 ADGRAGLRRHRSHEIEPIDHC----------------MIAAEGVSELGIERRDW------ 210
Query: 177 LREGKFTEEVMVNFVTKEGNL---PDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEF 233
G T E + +++ + P P + V+ + G + R G+ F
Sbjct: 211 --PGMATVEAIAATGSQDRQVILTPRPGARLPIVELDRPVSVMRVGEKDGGVHRVHGRPF 268
Query: 234 IRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV---EGEKILDMYSGVGTFGIYLAK 290
+RER DD Y + F+Q + A LV V + + +G+ LD+Y GVG F LA
Sbjct: 269 VRERADDRTYRVGSGGFWQVHPKAADTLVTAVMQGLLPRKGDMALDLYCGVGLFAGALAD 328
Query: 291 RGFN---VKGFDSNEFAIEMARRNV----EINNVDAEFEVASDREVSVKGFDTVIVDPPR 343
R + V G +S + A+E AR N+ + + E R + D +++DPPR
Sbjct: 329 RVGDQGAVLGIESGKRAVEDARHNLAAFDRVRIEQGKVESVLPR-TGIDEVDLIVLDPPR 387
Query: 344 AGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD---YRIDEIVALDMFPHTPHVEL 400
AG + V+ L+ I YV+C+P ARD+ YR+ + D+FP T HVE
Sbjct: 388 AGAGRKTVQHLSTLGARRIAYVACDPAALARDLGYFQDGGYRVRTLRVFDLFPMTAHVEC 447
Query: 401 VAKL 404
VA L
Sbjct: 448 VAIL 451
>sp|P44083|YBJF_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0958 >gi|1074579|pir||B64017
probable RNA methyltransferase HI0958 - Haemophilus
influenzae (strain Rd KW20) >gi|1573984|gb|AAC22619.1|
(U32777) RNA methyltransferase, putative [Haemophilus
influenzae Rd]
Length = 392
Score = 107 bits (264), Expect = 3e-22
Identities = 87/304 (28%), Positives = 144/304 (46%), Gaps = 36/304 (11%)
Query: 132 VDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFV 191
+D+ +CP++ LK+FI + +NI K +G L+Y++L E TE++M+ FV
Sbjct: 88 IDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILLTESIATEKLMLRFV 147
Query: 192 TK-EGNLP----------DPTNYFDFDSIYWSVNRSKSDVSYGDIERF-WGKEFIRERLD 239
+ E LP + + + SI ++ + + G+ E F ++F+ E +
Sbjct: 148 LRTENKLPLIRRELPKLLEKLPHLEVISI--NLQPQHAAILEGEQEIFLTEQQFLPENFN 205
Query: 240 DVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKIL---DMYSGVGTFGIYLAK------ 290
+ I P FFQTN A L + V I D++ GVG FG++ AK
Sbjct: 206 GIPLFIRPRGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGVGGFGLHCAKALQEKW 265
Query: 291 -RGFNVKGFDSNEFAIEMARRNVEI--------NNVDAEFEVASDREVSVKGFDTVIVDP 341
+ + G + + AI A + +I ++DA + + E D VIV+P
Sbjct: 266 GKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIENKNENKP---DLVIVNP 322
Query: 342 PRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD-YRIDEIVALDMFPHTPHVEL 400
PR G+ L + LN+ +P I+Y SCN T +D++ L Y+ +I DMFP T H E+
Sbjct: 323 PRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLTCYKPLKIQLFDMFPQTSHYEV 382
Query: 401 VAKL 404
+ L
Sbjct: 383 LVLL 386
>pir||T50920 hypothetical protein ygcA [imported] - Rubrivivax gelatinosus
>gi|7416824|dbj|BAA94073.1| (AB034704) similar to YgcA
of Escherichia coli [Rubrivivax gelatinosus]
Length = 473
Score = 106 bits (263), Expect = 4e-22
Identities = 122/452 (26%), Positives = 181/452 (39%), Gaps = 102/452 (22%)
Query: 17 KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPRCKAFG----KCGGCTL 72
K + + + PG+ + V+ R + L R S RV P C FG CGGC +
Sbjct: 27 KVVFIEGALPGETVQVQVSRRKNQWEQGVLSALARESSQRVRPGCPHFGLHAGACGGCKM 86
Query: 73 QHLNYDYQLEFKRKKLKRILGFEVEVVPSPKI-------FGHRNRIDLAIT---KDGI-- 120
QHL+ Q+ K++ L+ L +V P + +G+R R L++ K G+
Sbjct: 87 QHLHPAAQVAVKQRVLEDNLWHLGKVKPERLLRPIHGPAWGYRWRARLSVRYVPKKGVVL 146
Query: 121 -GFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLRE 179
GF ER + + D+ ECPV + L+E
Sbjct: 147 VGFHERKSRY-VADMLECPVLPAKVSAMLPALRE-------------------------- 179
Query: 180 GKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDIER-----------F 228
++ + + LP D + V R +S GD R +
Sbjct: 180 -------LIGAMEQRDRLPQ-IELAAGDEVIALVLRHLEPLSAGDAARLRAFGAEHGVQW 231
Query: 229 W----GKEFIRERLDD-------------VDYLIHPNSFFQTNSYQAVNLVRKVSELVEG 271
W G E + RLD+ V P F Q N LV + L+
Sbjct: 232 WLQPKGPETVH-RLDEGGPQLAYSLPEYGVTMPFKPTDFTQVNPQINRVLVDRAVRLLAP 290
Query: 272 ---EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAE-------- 320
E+I+D + G+G F + LA+R V G + +E ++ AR N N + A
Sbjct: 291 QPHERIVDWFCGLGNFTLPLARRAAAVHGIEGSETLVQRARENAAANGLAANTSFAARNL 350
Query: 321 FEVASDREVSVKGFDTVIVDPPRAG---LHPRLVKRLNRE---KPGVIVYVSCNPETFAR 374
FE+++D ++ D +VDPPR G L L + RE P IVYVSCNP T AR
Sbjct: 351 FEMSADELMTSGAADAWLVDPPREGAFALAKSLAELRGREGWTPPRRIVYVSCNPATLAR 410
Query: 375 D----VKMLDYRIDEIVALDMFPHTPHVELVA 402
D V + +R ++MFPHT HVE +A
Sbjct: 411 DAGLIVHLAGFRCVAAGVVNMFPHTAHVESIA 442
>gb|AAF49200.2| (AE003518) CG3808 gene product [Drosophila melanogaster]
Length = 642
Score = 106 bits (262), Expect = 5e-22
Identities = 105/411 (25%), Positives = 176/411 (42%), Gaps = 81/411 (19%)
Query: 70 CTLQHLNYDYQLEFKRKKLKRILG-------------------FEV-EVVPSPKIFGHRN 109
C L H+ YD Q++ K +++ +L F+ EV+PSP + G+RN
Sbjct: 165 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 224
Query: 110 RIDLAITKDGIG-----FR----ERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKI 160
+ + + K+ +G FR G ++ ++ + P + ++ A ++ + + K
Sbjct: 225 KNEFTVGKNSVGEVVVGFRLGCYSDGSV-EVAEVADLPHLPEQAKWAARSFQDLVRKSKF 283
Query: 161 SVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNY----------------- 203
+N + G R +++R T E+M+ NL +
Sbjct: 284 LPFNPDGNIGHFRQLMVRCSSATGELMLVAGIYSSNLSEDEQVELKQELKSFYEDLANDA 343
Query: 204 -FDFDSIYWS-VNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNL 261
+ S+Y+ V ++ + +E G I + + + + I P +FFQ N+ A L
Sbjct: 344 PYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANVL 403
Query: 262 VRKVSELVEGEK---ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV- 317
+K +LV K +LD+ G GT + AK V G + AI+ A N E N +
Sbjct: 404 YQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIK 463
Query: 318 DAEF--------------EVASDREVSVKGFDTV-IVDPPRAGLHPRLVKRL-NREKPGV 361
+A+F E D+E K D + +VDPPRAGLH R + + + +
Sbjct: 464 NAKFFTGNADDFIKSMVREALYDQEPG-KPLDLIAVVDPPRAGLHHRSIAAIRSADAINR 522
Query: 362 IVYVSCNPETFARDVKML-----------DYRIDEIVALDMFPHTPHVELV 401
+VYVSCNP + R+ L + VA+DMFPHT H ELV
Sbjct: 523 LVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELV 573
>sp|P44643|YGCA_HAEIN HYPOTHETICAL RNA METHYLTRANSFERASE HI0333 >gi|1074356|pir||C64148
hypothetical protein HI0333 - Haemophilus influenzae
(strain Rd KW20) >gi|1573302|gb|AAC21995.1| (U32718) RNA
methyltransferase, putative [Haemophilus influenzae Rd]
Length = 438
Score = 106 bits (261), Expect = 6e-22
Identities = 104/384 (27%), Positives = 174/384 (45%), Gaps = 41/384 (10%)
Query: 43 VASQWKLVRSSPLRVGPRCKAFGKCGGCTLQHLNYDYQLEFKRKKL-KRILGFEVEVVP- 100
+ +W++ SP R+ P+C F +CGGC QH+ + Q + K L KR+ + E +
Sbjct: 65 IVKKWRV--KSPERLEPKCAHFMRCGGCQGQHIPIEMQRKAKESALFKRLSKLQSEPISF 122
Query: 101 SPKIFG----HRNRIDLAI-----TKD-GIGFRERGKWWKIVDIDECPVFGKTSREAIER 150
P I G +R R+ L++ TK +GFR++ ++ + C V + +
Sbjct: 123 QPMICGDAWAYRRRVRLSLWFNPSTKQIEMGFRQKNT-NDLIPVQSCEVAEPAINYLLPK 181
Query: 151 LKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIY 210
L +E+ ++ K G + + G M+ TK D T F
Sbjct: 182 LTALLEK-----FSAPKQLGHIELVAADNG----VAMLLRYTKNLAEIDRTLLLKFAEQE 232
Query: 211 WSVNRSKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNS---YQAVNLVRKVSE 267
+ +SD IE+ +G + D + F Q NS VN E
Sbjct: 233 KLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDIRDFIQVNSALNEPMVNTALDWLE 289
Query: 268 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEFEVAS- 325
L + + +LD++ G+G F + LAKR + G + ++ A +N E N + + EF A
Sbjct: 290 LSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAERNQIKNIEFFQADL 349
Query: 326 -----DREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML- 379
++ + + F+ +++DPPR+G L L K I+YVSCNP T RD ++L
Sbjct: 350 DQSFVEQPWANQSFNKILLDPPRSGAAFAL-NALCELKAEKILYVSCNPATLVRDAEILC 408
Query: 380 --DYRIDEIVALDMFPHTPHVELV 401
Y+I++ +DMFPHT H+E +
Sbjct: 409 NFGYKIEKSAVIDMFPHTGHLESI 432
>gb|AAD21539.1| (AF088896) RNA methyltransferase [Zymomonas mobilis]
Length = 397
Score = 92.4 bits (226), Expect = 8e-18
Identities = 113/430 (26%), Positives = 178/430 (41%), Gaps = 68/430 (15%)
Query: 1 MRGVIRKLNDDGFGVLK-GILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGP 59
M+ +IR L G GV + G VP S P D I S + + P
Sbjct: 1 MKKIIR-LASKGDGVTEDGQFVPNSVPDDYI--------------SDDGKLEFGAHHIEP 45
Query: 60 RCKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKI-FGH------RNRID 112
C+ F CGGC LQ+ + + F ++ F + + +P + H R R+
Sbjct: 46 VCRHFSVCGGCRLQYADEEVYKNFLTDRIAE--AFHQQALSAPVLKTAHLSPPYSRRRVA 103
Query: 113 LAITKDG----IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEE-----EKISVW 163
L K G +G+ + ++VDI ECP+ +A L+ F+++ +
Sbjct: 104 LRAFKAGKKLTLGYNKTSSH-QLVDIVECPLLDINLFKAAMDLRSFLQKWLAPRSLAQIE 162
Query: 164 NIKKDEGF--LRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVS 221
D+G L M E E + F ++G R D
Sbjct: 163 MTLADQGIDCLLVMPFPETLEATEAITAFAAEKG-----------------FARLSIDQG 205
Query: 222 YGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV-EGEKILDMYSG 280
YG +E W E + L V + ++F Q LV V E V + + D++SG
Sbjct: 206 YG-VETRWESERVTVTLGAVPVTLPAHAFLQATKDGEQTLVHMVKEAVGDAHFVADLFSG 264
Query: 281 VGTFGIYLAK--RGFNVKGFDSNEFAIE----MARRNVEINNVDAEFEVASDREVSVKGF 334
+GTF + K R + +G A++ +A + V + + D F ++ V+ F
Sbjct: 265 LGTFALSFEKDKRVYAAEGMRDAVLALKQAAALAGKAVFVEHRDL-FRRPLQKDELVR-F 322
Query: 335 DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDM 391
+ +I+DPPRAG ++ L G IVYVSCNP TFARD K L + + + +
Sbjct: 323 ECIILDPPRAGAKEQIAN-LAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVGQ 381
Query: 392 FPHTPHVELV 401
FP + HVE+V
Sbjct: 382 FPWSLHVEMV 391
>sp|P55136|YGCA_VIBSS HYPOTHETICAL RNA METHYLTRANSFERASE IN RELA 5'REGION (ORFA)
>gi|537618|gb|AAA62209.1| (U13769) unknown [Vibrio sp.]
Length = 220
Score = 90.9 bits (222), Expect = 2e-17
Identities = 59/181 (32%), Positives = 95/181 (51%), Gaps = 14/181 (7%)
Query: 238 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILDMYSGVGTFGIYLAKRGFN 294
+DDV P F Q N V +V + ++ +++LD++ G+G F + LA+R
Sbjct: 29 IDDVRLTFSPKDFIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKA 88
Query: 295 VKGFDSNEFAIEMARRNVEINNVD-AEFEVAS-DREVSV-----KGFDTVIVDPPRAGLH 347
V G + + + A N N +D A F A+ D +V+ + FD +++DP RAG
Sbjct: 89 VVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQEQFDKILLDPARAGA- 147
Query: 348 PRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDMFPHTPHVELVAKL 404
+++ + P +VYVSCNP T ARD +ML Y++ + +DMFPHT H+E +
Sbjct: 148 AGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLF 207
Query: 405 V 405
V
Sbjct: 208 V 208
>emb|CAB95525.1| (AL359782) possible protein htf9c [Trypanosoma brucei]
Length = 559
Score = 87.4 bits (213), Expect = 3e-16
Identities = 68/202 (33%), Positives = 95/202 (46%), Gaps = 26/202 (12%)
Query: 229 WGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRK---VSELVEGEKILDMYSGVGTFG 285
+G + E L + + + P SFFQ N+ L+R+ V+EL +LD+ G GT G
Sbjct: 352 FGSATLTEHLLGLQFELSPTSFFQVNTAGMELLLRETVAVAELTPETTLLDLCCGTGTIG 411
Query: 286 IYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEF----------EVASDREVSVKGF 334
I LAK V G + E A+ AR N E N V +A F V S +
Sbjct: 412 IALAKHVKRVIGIELVESAVRDARLNAERNGVRNATFNCGRVEHLLPSVISQLSPEDRKD 471
Query: 335 DTVIVDPPRAGLHPRLVKRLNREKP-GVIVYVSCNPETFARDVKML-----------DYR 382
I+DPPRAG+ P ++K + +VY+SC + RD L +
Sbjct: 472 IVAILDPPRAGVTPTVLKWIRGTATIRRLVYISCEQKALQRDCPPLTKPATKAYRESPFN 531
Query: 383 IDEIVALDMFPHTPHVELVAKL 404
+ A+DMFPHTPHVE+VA L
Sbjct: 532 VVAGFAIDMFPHTPHVEMVAVL 553
>dbj|BAB15067.1| (AK025106) unnamed protein product [Homo sapiens]
Length = 475
Score = 86.2 bits (210), Expect = 6e-16
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 23/200 (11%)
Query: 225 IERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQA---VNLVRKVSELVEGEKILDMYSGV 281
+E G I E L + + I P++FFQ N+ A +++ ++L G +LD+ G
Sbjct: 234 LEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQLDAGSMVLDVCCGT 293
Query: 282 GTFGIYLAKRGFNVKGFDSNEFAIEMARRNV---EINNVDAEFEVASDREVSV-----KG 333
GT G+ LA++ V G + A+E AR N E++NV+ A D ++
Sbjct: 294 GTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQ 353
Query: 334 FDTVIVDPPRAGLHPRLVKRLNREKP-GVIVYVSCNPETF-----------ARDVKMLDY 381
I+DPPRAGLH +++ + R K ++YVSCNP + VK + +
Sbjct: 354 HLVAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPF 413
Query: 382 RIDEIVALDMFPHTPHVELV 401
R + VA+D+FP TPH E++
Sbjct: 414 RPVKAVAVDLFPQTPHCEML 433
>gi|6680315 HpaII tiny fragments locus 9c [Mus musculus]
>gi|3183977|emb|CAA39515.1| (X56044) protein Htf9C [Mus
musculus]
Length = 677
Score = 84.7 bits (206), Expect = 2e-15
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 29/203 (14%)
Query: 225 IERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQA---VNLVRKVSELVEGEKILDMYSGV 281
+E G + I+E L + + I P++FFQ N+ A ++++ ++L G +LD+ G
Sbjct: 438 LEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQLDGGSTVLDVCCGT 497
Query: 282 GTFGIYLAKRGFNVKGFDSNEFAIEMARRNV---EINNVDAEFEVASDREVSVKGFDT-- 336
GT G+ LA + V G + + A+E AR N E++NV+ A D V G +
Sbjct: 498 GTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAED---LVPGLVSRL 554
Query: 337 ------VIVDPPRAGLHPRLVKRLNR-EKPGVIVYVSCNPETF-----------ARDVKM 378
++DPPRAGLH +++ + + E ++YVSCNP + VK
Sbjct: 555 SSHQLVAVLDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKG 614
Query: 379 LDYRIDEIVALDMFPHTPHVELV 401
+ + VA+D+FP TPH E++
Sbjct: 615 TPFHPVKAVAVDLFPQTPHCEML 637
>pir||G81355 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) Cj0831c [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968277|emb|CAB73096.1| (AL139076) tRNA
(uracil-5-)-methyltransferase [Campylobacter jejuni]
Length = 357
Score = 80.8 bits (196), Expect = 3e-14
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 30/196 (15%)
Query: 232 EFIRERLDDVD----YLIHPNSFFQTNSYQAVNLVRKVSELVEGEK---ILDMYSGVGTF 284
E +R+ L+ D Y + + F Q N+ ++ V E++ +K +L++Y G G F
Sbjct: 156 ENLRQTLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNF 215
Query: 285 GIYLAKRGFNVKGFDSNEFAIEMARRNVEINN-VDAEFEVASDREVSVK----------- 332
+ LA F + + ++ I A +N E+NN + F S E+S+
Sbjct: 216 TLALAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLK 275
Query: 333 -------GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVK--MLDYRI 383
F V+VDPPRAGL ++ + +K G I+Y+SCNP T ++K L +R+
Sbjct: 276 DIRLDDFNFSHVLVDPPRAGLDKSVIDLI--KKYGNIIYISCNPMTLKENLKELSLTHRV 333
Query: 384 DEIVALDMFPHTPHVE 399
+E D F +TPH+E
Sbjct: 334 EEFALFDQFVNTPHLE 349
>gi|6322909 Endo-exonuclease; Rnc1p [Saccharomyces cerevisiae]
>gi|464650|sp|P33753|RNC1_YEAST ENDO-EXONUCLEASE NUCR
>gi|481102|pir||S37744 endo-exonuclease yNucR - yeast
(Saccharomyces cerevisiae) >gi|397360|emb|CAA81021.1|
(Z25734) yNucR endo-exonuclease [Saccharomyces
cerevisiae] >gi|486515|emb|CAA82134.1| (Z28281) ORF
YKR056w [Saccharomyces cerevisiae]
Length = 617
Score = 79.6 bits (193), Expect = 6e-14
Identities = 94/392 (23%), Positives = 152/392 (37%), Gaps = 68/392 (17%)
Query: 19 ILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGP--RCKAFGKCGGCTLQHLN 76
+++PF PGD + ++ + + +V SP+R R K FGK G L+ L
Sbjct: 199 VIIPFGLPGDVVNIKVFKTHPYYVESDLLDVVEKSPMRRDDLIRDKYFGKSSGSQLEFLT 258
Query: 77 YDYQLEFKRKKLKRILGFEV-------------EVVPSPKIFGHRNRI----DLAITKD- 118
YD QLE KRK + F V SP FG+R +I D+ K
Sbjct: 259 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQK 318
Query: 119 --------GIGFRERGKWWK----------IVDIDECPVFGKTSREAIERLKEFIEEEKI 160
G G + R +W K I+DIDEC + + + + + E+E
Sbjct: 319 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQE-- 376
Query: 161 SVWNIKKDEGFL---RYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSK 217
N KK L +L K T E + +++ N D Y V K
Sbjct: 377 -FKNYKKGATILLRENTTILDPSKPTLEQLTEEASRDEN---------GDISYVEVEDKK 426
Query: 218 SDVSYGDIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEG------ 271
++V ++ + E +D + FFQ N+ + + V + ++
Sbjct: 427 NNVRLAKTCVTNPRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDD 486
Query: 272 ---EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDRE 328
+ ++D Y G G F I +K V G + + ++ A +N + N V+ + E
Sbjct: 487 NKTKFLVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAE 546
Query: 329 VSVKGFDT------VIVDPPRAGLHPRLVKRL 354
+ DT VI+DPPR G +K+L
Sbjct: 547 KLFESIDTPSENTSVILDPPRKGCDELFLKQL 578
>dbj|BAB14223.1| (AK022749) unnamed protein product [Homo sapiens]
Length = 504
Score = 78.8 bits (191), Expect = 1e-13
Identities = 86/358 (24%), Positives = 154/358 (42%), Gaps = 55/358 (15%)
Query: 98 VVPSPKIFGHRNRIDLAITK--DG----IGFRERGKWWK----IVDIDECPVFGKTSREA 147
++PSP I G+RN+ ++ + DG +GF G W V + + +
Sbjct: 143 IIPSPVINGYRNKSTFSVNRGPDGNPKTVGFY-LGTWRDGNVVCVQSNHLKNIPEKHSQV 201
Query: 148 IERLKEFIEEEKISVWNIKKDEGFLRYMVLREG--------------KFTEEVM--VNFV 191
+ + F+ + + + + G+ R + +R K ++E + +
Sbjct: 202 AQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGRTMAIITFHPQKLSQEELHVQKEI 261
Query: 192 TKEGNLPDPTNYFDFDSIYWSVNR-SKSDVSYGDIERFWGKEFIRERLDDVDYLIHPNSF 250
KE + P S+Y+ + ++ + +G+ +I E L + I P++F
Sbjct: 262 VKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELLSLKIRISPDAF 321
Query: 251 FQTNSYQAVNLVRKVSEL--VEGEKIL-DMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEM 307
FQ N+ A L R V EL V + IL D+ G G G+ LA+ V G + E A+E
Sbjct: 322 FQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVED 381
Query: 308 ARRNVEINNV-DAEFEVASDREVS---VKGFD-----TVIVDPPRAGLHPRLVKRL-NRE 357
AR N + ++EF ++ +K + +V+P RAGLH ++++ + N
Sbjct: 382 ARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQAIRNFR 441
Query: 358 KPGVIVYVSCN--------------PETFARDVKMLDYRIDEIVALDMFPHTPHVELV 401
+V+VSC P A+ + + + + V +D+FPHTPH ELV
Sbjct: 442 AIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELV 499
>sp|P23003|TRMA_ECOLI TRNA (URACIL-5-)-METHYLTRANSFERASE
(TRNA(M-5-U54)-METHYLTRANSFERASE) (RUMT)
>gi|96525|pir||A37321 tRNA (uracil-5-)-methyltransferase
(EC 2.1.1.35) - Escherichia coli
>gi|148051|gb|AAA24691.1| (M57568) m-5-U54 transfer RNA
methyltransferase [Escherichia coli]
>gi|396312|gb|AAC43071.1| (U00006) tRNA
(uracil-5)-methyltransferase [Escherichia coli]
>gi|1790403|gb|AAC76947.1| (AE000470) tRNA
(uracil-5-)-methyltransferase [Escherichia coli K12]
Length = 366
Score = 74.9 bits (181), Expect = 2e-12
Identities = 52/196 (26%), Positives = 99/196 (49%), Gaps = 29/196 (14%)
Query: 231 KEFIRERLD----DVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTF 284
+++I ERL ++ Y NSF Q N+ + ++ ++ +G K +L++Y G G F
Sbjct: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNF 224
Query: 285 GIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD---------AEFEVASD--------R 327
+ LA+ V + + ++ A+ N+ N++D EF A + +
Sbjct: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284
Query: 328 EVSVKGF--DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRI 383
+ +K + +T+ VDPPR+GL K + I+Y+SCNPET ++++ L +++
Sbjct: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR--ILYISCNPETLCKNLETLSQTHKV 342
Query: 384 DEIVALDMFPHTPHVE 399
+ + D FP+T H+E
Sbjct: 343 ERLALFDQFPYTHHME 358
>pir||B83057 tRNA (uracil-5-)-methyltransferase PA4720 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950979|gb|AAG08106.1|AE004885_11 (AE004885) tRNA
(uracil-5-)-methyltransferase [Pseudomonas aeruginosa]
Length = 363
Score = 69.9 bits (168), Expect = 5e-11
Identities = 47/152 (30%), Positives = 72/152 (46%), Gaps = 29/152 (19%)
Query: 272 EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD------------- 318
+ +L++Y G G F + LA R V + ++ ++ A N+ N VD
Sbjct: 209 DDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNAALANLADNAVDNVSLVRLSAEELT 268
Query: 319 ------AEFEVASDREVSVKGFDTVIVDPPRAGLHP---RLVKRLNREKPGVIVYVSCNP 369
F +D ++ F +V VDPPRAG+ P L +R R I+Y+SCNP
Sbjct: 269 QALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDPDTCELARRFER-----ILYISCNP 323
Query: 370 ETFARDVKML--DYRIDEIVALDMFPHTPHVE 399
ET A+++ L +RI D FP+T H+E
Sbjct: 324 ETLAQNIAQLHDTHRISRCALFDQFPYTHHME 355
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157312057
Number of Sequences: 2977
Number of extensions: 6881160
Number of successful extensions: 16203
Number of sequences better than 1.0e-10: 42
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 16041
Number of HSP's gapped (non-prelim): 52
length of query: 405
length of database: 189,106,746
effective HSP length: 53
effective length of query: 352
effective length of database: 157,386,935
effective search space: 55400201120
effective search space used: 55400201120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)