BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0720 (PAB0720) DE:Hypothetical protein
         (136 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75086 hypothetical protein PAB0720 - Pyrococcus abyssi (st...   263  7e-70
pir||A71055 hypothetical protein PH1135 - Pyrococcus horikoshii ...   182  1e-45

>pir||B75086 hypothetical protein PAB0720 - Pyrococcus abyssi (strain Orsay)
           >gi|5458503|emb|CAB49991.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 136
           
 Score =  263 bits (664), Expect = 7e-70
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MSEYKVLLEAVKVKGDSIFSTKSELIGILAFKLGILSVGEAKDLVNKAISEGIIEETEEG 60
           MSEYKVLLEAVKVKGDSIFSTKSELIGILAFKLGILSVGEAKDLVNKAISEGIIEETEEG
Sbjct: 1   MSEYKVLLEAVKVKGDSIFSTKSELIGILAFKLGILSVGEAKDLVNKAISEGIIEETEEG 60

Query: 61  LKVNVELIEEEEESKDIFGEMVEYIARQLGMSEIEVLEEIEKMKDRYGNLDKKVLAYLYG 120
           LKVNVELIEEEEESKDIFGEMVEYIARQLGMSEIEVLEEIEKMKDRYGNLDKKVLAYLYG
Sbjct: 61  LKVNVELIEEEEESKDIFGEMVEYIARQLGMSEIEVLEEIEKMKDRYGNLDKKVLAYLYG 120

Query: 121 MEKGLDMEKFREDLGE 136
           MEKGLDMEKFREDLGE
Sbjct: 121 MEKGLDMEKFREDLGE 136


>pir||A71055 hypothetical protein PH1135 - Pyrococcus horikoshii
           >gi|3257552|dbj|BAA30235.1| (AP000005) 134aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 134
           
 Score =  182 bits (457), Expect = 1e-45
 Identities = 84/124 (67%), Positives = 113/124 (90%)

Query: 11  VKVKGDSIFSTKSELIGILAFKLGILSVGEAKDLVNKAISEGIIEETEEGLKVNVELIEE 70
           +KVKGD+IFS++SE+IGILAFKLG +SV EAK+L+ + I EGIIEE+EEGL V V LIEE
Sbjct: 1   MKVKGDNIFSSRSEIIGILAFKLGAMSVSEAKELIKEGIEEGIIEESEEGLIVKVNLIEE 60

Query: 71  EEESKDIFGEMVEYIARQLGMSEIEVLEEIEKMKDRYGNLDKKVLAYLYGMEKGLDMEKF 130
           EE+ +DIFGE+VEY+A++L ++E+EV+EEI+++++RYGNLDKK+LAYLYG+EKGLDM KF
Sbjct: 61  EEKKRDIFGEIVEYLAKELNLTELEVMEEIKRLEERYGNLDKKLLAYLYGLEKGLDMSKF 120

Query: 131 REDL 134
           +E+L
Sbjct: 121 KEEL 124


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.311    0.136    0.347 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43864296
Number of Sequences: 2977
Number of extensions: 1738459
Number of successful extensions: 7648
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7646
Number of HSP's gapped (non-prelim): 2
length of query: 136
length of database: 189,106,746
effective HSP length: 61
effective length of query: 75
effective length of database: 152,599,039
effective search space: 11444927925
effective search space used: 11444927925
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 160 (66.7 bits)