BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0721 (PAB0721) DE:METHLYTRANSFERASE
(311 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75086 methlytransferase PAB0721 - Pyrococcus abyssi (strai... 622 e-177
pir||H71054 hypothetical protein PH1134 - Pyrococcus horikoshii ... 467 e-131
pir||D72272 conserved hypothetical protein - Thermotoga maritima... 265 7e-70
sp|Q58523|YB23_METJA HYPOTHETICAL PROTEIN MJ1123 >gi|2128680|pir... 214 9e-55
gi|11498396 conserved hypothetical protein [Archaeoglobus fulgid... 126 4e-28
emb|CAC11165.1| (AL445063) hypothetical protein [Thermoplasma ac... 122 4e-27
pir||A72576 hypothetical protein APE1889 - Aeropyrum pernix (str... 120 3e-26
pir||H70409 conserved hypothetical protein aq_1270 - Aquifex aeo... 120 3e-26
sp|Q10853|YK03_MYCTU HYPOTHETICAL 31.1 KDA PROTEIN RV2003C >gi|7... 99 6e-20
gb|AAK42414.1| Methyltransferase, putative [Sulfolobus solfatari... 87 3e-16
>pir||C75086 methlytransferase PAB0721 - Pyrococcus abyssi (strain Orsay)
>gi|5458504|emb|CAB49992.1| (AJ248286) METHLYTRANSFERASE
[Pyrococcus abyssi]
Length = 311
Score = 622 bits (1587), Expect = e-177
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MITMPKIRPFEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGI 60
MITMPKIRPFEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGI
Sbjct: 1 MITMPKIRPFEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGI 60
Query: 61 KLGVEPSKRMAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYR 120
KLGVEPSKRMAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYR
Sbjct: 61 KLGVEPSKRMAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYR 120
Query: 121 VLKPNGHIIIGFIDRESKIGREYEKNKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQ 180
VLKPNGHIIIGFIDRESKIGREYEKNKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQ
Sbjct: 121 VLKPNGHIIIGFIDRESKIGREYEKNKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQ 180
Query: 181 TLFRRLEEVDSVEPVKEGFGEGSFVAIRARKMDAMDFAEKVKGLAERLGEDKLREAIDRF 240
TLFRRLEEVDSVEPVKEGFGEGSFVAIRARKMDAMDFAEKVKGLAERLGEDKLREAIDRF
Sbjct: 181 TLFRRLEEVDSVEPVKEGFGEGSFVAIRARKMDAMDFAEKVKGLAERLGEDKLREAIDRF 240
Query: 241 LTLNEGIEKTRGEHFAKAGIYGFLEGILTTLKLKHEDEEISELLSLIKKAREIEEAFLRK 300
LTLNEGIEKTRGEHFAKAGIYGFLEGILTTLKLKHEDEEISELLSLIKKAREIEEAFLRK
Sbjct: 241 LTLNEGIEKTRGEHFAKAGIYGFLEGILTTLKLKHEDEEISELLSLIKKAREIEEAFLRK 300
Query: 301 GNPPIFEQKPL 311
GNPPIFEQKPL
Sbjct: 301 GNPPIFEQKPL 311
>pir||H71054 hypothetical protein PH1134 - Pyrococcus horikoshii
>gi|3257551|dbj|BAA30234.1| (AP000005) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 467 bits (1189), Expect = e-131
Identities = 219/307 (71%), Positives = 269/307 (87%), Gaps = 1/307 (0%)
Query: 2 ITMPKIRPFEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGIK 61
I MPKI+PFEE+TERY++WFE+H+YAYLSE+NAIK V+P+EEC+EVGVG+GRFA+PLGIK
Sbjct: 4 IIMPKIKPFEEHTERYDSWFERHKYAYLSELNAIKKVLPEEECIEVGVGTGRFAQPLGIK 63
Query: 62 LGVEPSKRMAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRV 121
+GVEPS++MA+IAE RGIKVIEG+AEDLPFPD+SL CILMVTTICFVDD EK+IKEAYRV
Sbjct: 64 IGVEPSRKMAEIAEKRGIKVIEGIAEDLPFPDSSLSCILMVTTICFVDDVEKSIKEAYRV 123
Query: 122 LKPNGHIIIGFIDRESKIGREYEKNKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQT 181
LKP G+I+IGFID+ SKIG+EYE+NKDKSVFYREA FFST+E++++LER+GFKVEKIVQT
Sbjct: 124 LKPGGYIVIGFIDKNSKIGKEYERNKDKSVFYREAKFFSTEEVISILERSGFKVEKIVQT 183
Query: 182 LFRRLEEVDSVEPVKEGFGEGSFVAIRARKMDAMD-FAEKVKGLAERLGEDKLREAIDRF 240
LF +L+E+ +EPVKEG+GEGSFVAIRA+K+D + ++VK LA LGE++ AIDRF
Sbjct: 184 LFHKLDEIKDIEPVKEGYGEGSFVAIRAKKVDITERIIKEVKELARDLGEEETLNAIDRF 243
Query: 241 LTLNEGIEKTRGEHFAKAGIYGFLEGILTTLKLKHEDEEISELLSLIKKAREIEEAFLRK 300
L LN+G+EK RGEHF + GIYGFLEG+LTT K K+ DE I LLS +++ RE EE FLRK
Sbjct: 244 LLLNKGLEKIRGEHFVRVGIYGFLEGLLTTFKSKYNDERIDRLLSAVRELREREEYFLRK 303
Query: 301 GNPPIFE 307
NPPI E
Sbjct: 304 SNPPISE 310
>pir||D72272 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981851|gb|AAD36367.1|AE001784_9 (AE001784)
conserved hypothetical protein [Thermotoga maritima]
Length = 207
Score = 265 bits (669), Expect = 7e-70
Identities = 120/202 (59%), Positives = 160/202 (78%)
Query: 10 FEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGIKLGVEPSKR 69
FE + YE WF HR+AYLSE+ A+K ++P+ VE+GVG+GRFA PL IK+GVEPS+R
Sbjct: 5 FERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIKIGVEPSER 64
Query: 70 MAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRVLKPNGHII 129
MA+IA RG+ V++G AE+LP D S + LMVTTICFVDDPE+A+KEAYR+LK G++I
Sbjct: 65 MAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 124
Query: 130 IGFIDRESKIGREYEKNKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQTLFRRLEEV 189
+G +DRES +GREYEKNK+KSVFY+ A FFST+E+++L+ + GF+ K+VQTLF+ E+
Sbjct: 125 VGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSEL 184
Query: 190 DSVEPVKEGFGEGSFVAIRARK 211
+EPVKEG+GEG+FV IR K
Sbjct: 185 SEIEPVKEGYGEGAFVVIRGTK 206
>sp|Q58523|YB23_METJA HYPOTHETICAL PROTEIN MJ1123 >gi|2128680|pir||B64440 hypothetical
protein MJ1123 - Methanococcus jannaschii
>gi|1499975|gb|AAB99125.1| (U67555) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 205
Score = 214 bits (540), Expect = 9e-55
Identities = 105/203 (51%), Positives = 145/203 (70%), Gaps = 1/203 (0%)
Query: 10 FEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGIKLGVEPSKR 69
F++Y E Y+ WF+++ Y SEI A+K +P+ +E+GVG+GRFA+P IK+GV+ SK
Sbjct: 4 FDKYAEEYDKWFDENEIIYKSEIEALKRHIPKGRGLEIGVGTGRFAKPFNIKIGVDISKE 63
Query: 70 MAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRVLKPNGHII 129
MAKIAE RGIKVI EDLPF D + L+ T + F ++P+K I+EA RVLK G II
Sbjct: 64 MAKIAEKRGIKVIIAKGEDLPFKDEEFDFFLINTVLEFAENPKKMIEEAKRVLKRGGKII 123
Query: 130 IGFIDRESKIGREYEKNKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQTLFRRLEEV 189
IG IDR+S +G+ YE+ K KS FY++ANF S +E++ +L+ GFK K QT+F+ +++V
Sbjct: 124 IGIIDRDSFLGKMYEEKKQKSKFYKDANFLSAKEVIEMLKELGFKNIKATQTIFKEIDKV 183
Query: 190 DSVEPVKEGFGEGSFVAIRARKM 212
D VE VKEG+GEG FVAI A K+
Sbjct: 184 DKVE-VKEGYGEGGFVAISAEKI 205
>gi|11498396 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429712|pir||F69348 conserved hypothetical protein
AF0790 - Archaeoglobus fulgidus
>gi|2649819|gb|AAB90450.1| (AE001050) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 184
Score = 126 bits (313), Expect = 4e-28
Identities = 69/169 (40%), Positives = 105/169 (61%), Gaps = 7/169 (4%)
Query: 10 FEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGIKLGVEPSKR 69
F ERY+ W++++R Y +E+ + P VEVGVG+GRFA +GI LGV+ S +
Sbjct: 4 FNRNAERYDAWYDRNRELYEAELELLPK--PISPSVEVGVGTGRFAV-IGIDLGVDVSLQ 60
Query: 70 MAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRVLKPNGHII 129
M +IA+ RG++ + G A LPF D S ++ T+CF+D+P KA+ E RVL+ G ++
Sbjct: 61 MLRIAKKRGVECVAGDAAHLPFKDKSFRSAYLIFTLCFLDEPIKALMEIKRVLE--GTLV 118
Query: 130 IGFIDRESKIGREYEKNKDKSVFYREANFFSTQEIVNLLERNGFKVEKI 178
+ S +GREY KD S FYR+A F + E++++L GFKV++I
Sbjct: 119 ACVVPANSGLGREY-SGKDSS-FYRKARFLTEDEVLSMLRETGFKVKEI 165
>emb|CAC11165.1| (AL445063) hypothetical protein [Thermoplasma acidophilum]
Length = 188
Score = 122 bits (304), Expect = 4e-27
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 9/173 (5%)
Query: 7 IRPFEEYTERYENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGIKLGVEP 66
I+ F+E + +Y+NW+E HR Y ++ I +P VE+GVG+GRFA LGIK+GV+
Sbjct: 2 IKYFDENSIKYDNWYESHRKEYGDQVEFIGGRLPSGMGVEIGVGTGRFASKLGIKVGVDV 61
Query: 67 SKRMAKIAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRVLKPNG 126
S++M IA RGI I A+ LPF + + + TICF+DDP +++EA RV +
Sbjct: 62 SEKMLSIASKRGIFPIMASADHLPFISGYFDFSIFIVTICFLDDPVSSLREARRVSRTVI 121
Query: 127 HIIIGFIDRESKIGREY--EKNKDKSVFYREANFFSTQEIVNLLERNGFKVEK 177
++I + G EY + ++K FY A F++ E+V + E+ G KV K
Sbjct: 122 SVLI-------EAGTEYSMKLQREKKGFYAFARFYTEDEVVGMYEKAGMKVLK 167
>pir||A72576 hypothetical protein APE1889 - Aeropyrum pernix (strain K1)
>gi|5105581|dbj|BAA80894.1| (AP000062) 224aa long
hypothetical protein [Aeropyrum pernix]
Length = 224
Score = 120 bits (297), Expect = 3e-26
Identities = 71/207 (34%), Positives = 110/207 (52%), Gaps = 5/207 (2%)
Query: 10 FEEYTERYENWFEKHRYAYLSEINAIKSVMP--QEECVEVGVGSGRFAEPLGIKLGVEPS 67
F+ ERY+ W+E++R +E + + +EVGVG+G FA +G G++PS
Sbjct: 14 FDRLYERYDKWYEENRLLAANEAKTVSRALEGSPRPLLEVGVGTGFFASIVGADAGLDPS 73
Query: 68 KRMAKIAESRGIKV-IEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRVLKPNG 126
M + A RGI + + GV E +PF L+V T+CF DDP++ ++E +RVL G
Sbjct: 74 LGMLRRARERGIPLLVAGVGERMPFRSRVFGSALIVVTLCFADDPQELLREVWRVLAWGG 133
Query: 127 HIIIGFIDRESKIGREYE-KNKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQTL-FR 184
++ + R+S G YE K + FY +A F + + +L+ GF +E+ TL F+
Sbjct: 134 VLVSCIVPRDSSWGEYYEAKGRAGHPFYSKARFITNEMHHTMLKNAGFSLERQYATLSFK 193
Query: 185 RLEEVDSVEPVKEGFGEGSFVAIRARK 211
EE EPV+ G+ F RARK
Sbjct: 194 PWEEPREEEPVEAWGGDYGFTCTRARK 220
>pir||H70409 conserved hypothetical protein aq_1270 - Aquifex aeolicus
>gi|2983718|gb|AAC07281.1| (AE000732) hypothetical
protein [Aquifex aeolicus]
Length = 200
Score = 120 bits (297), Expect = 3e-26
Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 11/176 (6%)
Query: 43 ECVEVGVGSGRFAEPLGIKLGVEPSKRMAKIAESRGIKVIEGVAEDLPFPDNSLECILMV 102
E G G+GRFA+ LGI+ GV+ S M K+A+ RGIKV E+LPF + + + +V
Sbjct: 27 EIFRSGRGTGRFAKALGIEYGVDTSFNMLKVAKERGIKVALAKGENLPFKSETFDSVFLV 86
Query: 103 TTICFVDDPEKAIKEAYRVLKPNGHIIIGFIDRESKIGREY-EKNKDKSVFYREANFFST 161
TICFV++P++ +KEA+RVLK +G + +G I +ESK + Y EK K+ FY+ A F+S
Sbjct: 87 VTICFVENPKQVLKEAHRVLKRDGKLYLGLILKESKWAKFYEEKAKNGHPFYKHARFYSF 146
Query: 162 QEIVNLLERNGFKVEKIVQTLFRRLEEVDSVEPVKE-----GFGEGS-FVAIRARK 211
E+ ++ ++ F E++ TL LEE EPVK GF E S F IR K
Sbjct: 147 FELKEMV-KDIFSFEEMKSTL---LEEPQDSEPVKNKEIKPGFYENSGFTCIRLSK 198
>sp|Q10853|YK03_MYCTU HYPOTHETICAL 31.1 KDA PROTEIN RV2003C >gi|7429714|pir||A70759
hypothetical protein Rv2003c - Mycobacterium
tuberculosis (strain H37RV) >gi|1403450|emb|CAA98385.1|
(Z74025) hypothetical protein Rv2003c [Mycobacterium
tuberculosis]
Length = 285
Score = 99.1 bits (243), Expect = 6e-20
Identities = 65/201 (32%), Positives = 105/201 (51%), Gaps = 9/201 (4%)
Query: 17 YENWFEKH--RYAYLSEINAIKSVMP--QEECVEVGVGSGRFAEPLGIKLGVEPSKRMAK 72
Y+ W++ R +E+ A++ ++ + +E+GVG+GRFA+ LG++ G++PS+
Sbjct: 70 YDAWYDSPTGRPILATEVAALRPLIEVFAQPRLEIGVGTGRFADLLGVRFGLDPSRDALM 129
Query: 73 IAESRGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRVLKPNGHIIIGF 132
A RG+ V V E +PF +LM T+CFV DP +E R+L G ++IGF
Sbjct: 130 FARRRGVLVANAVGEAVPFVSRHFGAVLMAFTLCFVTDPAAIFRETRRLLADGGGLVIGF 189
Query: 133 IDRESKIGREYEKNKDK-SVFYREANFFSTQEIVNLLERNGFKVEKIVQTLFR--RLEEV 189
+ R + Y + YR+A F++ E+ LL +GF+V TL + L
Sbjct: 190 LPRGTPWADLYALRAARGQPGYRDARFYTAAELEQLLADSGFRVIARRCTLHQPPGLARY 249
Query: 190 DSVEPVKEGFGEGS-FVAIRA 209
D +E +G G+ FVAI A
Sbjct: 250 D-IEAAHDGIQAGAGFVAISA 269
>gb|AAK42414.1| Methyltransferase, putative [Sulfolobus solfataricus]
Length = 223
Score = 86.6 bits (211), Expect = 3e-16
Identities = 62/198 (31%), Positives = 99/198 (49%), Gaps = 11/198 (5%)
Query: 17 YENWFEKHRYAYLSEINAIKSVMPQEECVEVGVGSGRFAEPLGIKLGVEPSKRMAKIAES 76
Y+ W+E H Y +E N ++S ++C++VG G F E +G ++ V + + ES
Sbjct: 13 YKRWYELHSKLYENERNVVRS-FNLKDCLDVGSGPDIFHEEIGGRI-VALDISLLMLKES 70
Query: 77 RGIKVIEGVAEDLPFPDNSLECILMVTTICFVDDPEKAIKEAYRVLKPNGHIIIGFIDRE 136
+ + + A LPF DNS +C+ T+CF++D + I+E R+ K II FI R+
Sbjct: 71 KSDEKVLADALHLPFRDNSFKCVFSSVTVCFIEDVKGFIREMARITKERA--IICFIARD 128
Query: 137 SKIGREYEK-NKDKSVFYREANFFSTQEIVNLLERNGFKVEKIVQTLFRRLE-EVDSVEP 194
S G YE K +Y A F S +E ++ + K+ +I TL + E E+D V
Sbjct: 129 SPWGEYYENLGKSGHKYYSHARFISRREFYVII-NDFMKISRIRSTLKKMSETEIDGV-- 185
Query: 195 VKEGFGEGSFVAIRARKM 212
GSF+ + A M
Sbjct: 186 --YNDDSGSFICVEAIPM 201
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111991561
Number of Sequences: 2977
Number of extensions: 4650214
Number of successful extensions: 14133
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14112
Number of HSP's gapped (non-prelim): 10
length of query: 311
length of database: 189,106,746
effective HSP length: 57
effective length of query: 254
effective length of database: 154,992,987
effective search space: 39368218698
effective search space used: 39368218698
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)